BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018574
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/321 (77%), Positives = 289/321 (90%)
Query: 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQS 79
K+ FET+E V+ +FD MG+++DLLRGIY YGFEKPSAIQQRA+ IIKGRDVIAQ+QS
Sbjct: 25 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS 84
Query: 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK 139
GTGKT+ +++V Q +D RE QALIL+PTRELA Q +K +LA+GD++N+Q HAC+GG
Sbjct: 85 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 144
Query: 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199
+VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK+QIYDV
Sbjct: 145 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 204
Query: 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259
YRYLPP QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWK
Sbjct: 205 YRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 264
Query: 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFR 319
FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR NFTVSSMHGDMPQKER++IM EFR
Sbjct: 265 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324
Query: 320 SGTTRVLITTDVWARGLDVQQ 340
SG +RVLI+TDVWARGLDV Q
Sbjct: 325 SGASRVLISTDVWARGLDVPQ 345
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/321 (77%), Positives = 289/321 (90%)
Query: 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQS 79
K+ FET+E V+ +FD MG+++DLLRGIY YGFEKPSAIQQRA+ IIKGRDVIAQ+QS
Sbjct: 25 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS 84
Query: 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK 139
GTGKT+ +++V Q +D RE QALIL+PTRELA Q +K +LA+GD++N+Q HAC+GG
Sbjct: 85 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 144
Query: 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199
+VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK+QIYDV
Sbjct: 145 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 204
Query: 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259
YRYLPP QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWK
Sbjct: 205 YRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 264
Query: 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFR 319
FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR NFTVSSMHGDMPQKER++IM EFR
Sbjct: 265 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324
Query: 320 SGTTRVLITTDVWARGLDVQQ 340
SG +RVLI+TDVWARGLDV Q
Sbjct: 325 SGASRVLISTDVWARGLDVPQ 345
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/321 (77%), Positives = 289/321 (90%)
Query: 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQS 79
K+ FET+E V+ +FD MG+++DLLRGIY YGFEKPSAIQQRA+ IIKGRDVIAQ+QS
Sbjct: 24 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS 83
Query: 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK 139
GTGKT+ +++V Q +D RE QALIL+PTRELA Q +K +LA+GD++N+Q HAC+GG
Sbjct: 84 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 143
Query: 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199
+VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK+QIYDV
Sbjct: 144 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 203
Query: 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259
YRYLPP QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWK
Sbjct: 204 YRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 263
Query: 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFR 319
FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR NFTVSSMHGDMPQKER++IM EFR
Sbjct: 264 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323
Query: 320 SGTTRVLITTDVWARGLDVQQ 340
SG +RVLI+TDVWARGLDV Q
Sbjct: 324 SGASRVLISTDVWARGLDVPQ 344
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 534 bits (1375), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/321 (77%), Positives = 289/321 (90%)
Query: 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQS 79
K+ FET+E V+ +FD MG+++DLLRGIY YGFEKPSAIQQRA+ IIKGRDVIAQ+QS
Sbjct: 3 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQS 62
Query: 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK 139
GTGKT+ +++V Q +D RE QALIL+PTRELA Q +K +LA+GD++N+Q HAC+GG
Sbjct: 63 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGT 122
Query: 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199
+VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK+QIYDV
Sbjct: 123 NVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 182
Query: 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259
YRYLPP QVVLISATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWK
Sbjct: 183 YRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 242
Query: 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFR 319
FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMR NFTVSSMHGDMPQKER++IM EFR
Sbjct: 243 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 302
Query: 320 SGTTRVLITTDVWARGLDVQQ 340
SG +RVLI+TDVWARGLDV Q
Sbjct: 303 SGASRVLISTDVWARGLDVPQ 323
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 524 bits (1350), Expect = e-149, Method: Compositional matrix adjust.
Identities = 242/307 (78%), Positives = 281/307 (91%)
Query: 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93
+FD MG+++DLLRGIY YGFEKPSAIQQRA+ IIKGRDVIAQ+QSGTGKT+ +++V Q
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 94 TVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVH 153
+D RE QALIL+PTRELA Q +K +LA+GD++N+Q+HAC+GG +VGEDIRKL++G H
Sbjct: 62 CLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQH 121
Query: 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213
VV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK+QIYDVYRYLPP QVVLIS
Sbjct: 122 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 181
Query: 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 273
ATLPHE+LEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT
Sbjct: 182 ATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 241
Query: 274 QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 333
QAVIFCNTKRKVDWLTEKMR NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWA
Sbjct: 242 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 301
Query: 334 RGLDVQQ 340
RGLDV Q
Sbjct: 302 RGLDVPQ 308
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 523 bits (1347), Expect = e-149, Method: Compositional matrix adjust.
Identities = 243/307 (79%), Positives = 280/307 (91%)
Query: 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93
+FD MG+++DLLRGIY YGFEKPSAIQQRA+ IIKGRDVIAQ+QSGTGKT+ +++V Q
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 94 TVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVH 153
+D RE QALIL+PTRELA Q +K +LA+GD++N+Q HAC+GG +VGEDIRKL++G H
Sbjct: 62 CLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH 121
Query: 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213
VV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK+QIYDVYRYLPP QVVLIS
Sbjct: 122 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 181
Query: 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 273
ATLPHEILEMT KFMTDP++ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT
Sbjct: 182 ATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 241
Query: 274 QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 333
QAVIFCNTKRKVDWLTEKMR NFTVSSMHGDMPQKER++IM EFRSG +RVLI+TDVWA
Sbjct: 242 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWA 301
Query: 334 RGLDVQQ 340
RGLDV Q
Sbjct: 302 RGLDVPQ 308
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 256/312 (82%), Gaps = 1/312 (0%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
E + SFD M + + LLRGIY YGFEKPSAIQQRA++P IKG DVIAQAQSGTGKT+ A+
Sbjct: 11 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 70
Query: 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
++ Q ++ + QAL+L+PTRELA Q +KV++A+GD++ HAC+GG +V +++KL+
Sbjct: 71 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 130
Query: 150 -HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208
H++ GTPGRV DM+ R+ L + IK+ VLDE+DEMLSRGFKDQIYD+++ L + Q
Sbjct: 131 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 190
Query: 209 VVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268
VVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGI+QF++ VEREEWK DTLCDLY+
Sbjct: 191 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYE 250
Query: 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328
TLTITQAVIF NT+RKVDWLTEKM +FTVS+MHGDM QKERD IM EFRSG++RVLIT
Sbjct: 251 TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 310
Query: 329 TDVWARGLDVQQ 340
TD+ ARG+DVQQ
Sbjct: 311 TDLLARGIDVQQ 322
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust.
Identities = 199/312 (63%), Positives = 256/312 (82%), Gaps = 1/312 (0%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
E + SFD M + + LLRGIY YGFEKPSAIQQRA++P IKG DVIAQAQSGTGKT+ A+
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
++ Q ++ + QAL+L+PTRELA Q +KV++A+GD++ HAC+GG +V +++KL+
Sbjct: 97 SILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 156
Query: 150 -HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208
H++ GTPGRV DM+ R+ L + IK+ VLDE+DEMLSRGFKDQIYD+++ L + Q
Sbjct: 157 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 216
Query: 209 VVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268
VVL+SAT+P ++LE+T KFM DP++ILVK++ELTLEGI+QF++ VEREEWK DTLCDLY+
Sbjct: 217 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYE 276
Query: 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328
TLTITQAVIF NT+RKVDWLTEKM +FTVS+MHGDM QKERD IM EFRSG++RVLIT
Sbjct: 277 TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLIT 336
Query: 329 TDVWARGLDVQQ 340
TD+ ARG+DVQQ
Sbjct: 337 TDLLARGIDVQQ 348
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/309 (59%), Positives = 247/309 (79%), Gaps = 1/309 (0%)
Query: 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV 91
+ FD M + ++LLRG++ YGFE+PSAIQQRA+MPII+G DV+AQAQSGTGKT ++
Sbjct: 21 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 80
Query: 92 CQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151
Q +DTS + QAL+L+PTRELA Q +KV++A+ ++I+ HAC+GG S ED L
Sbjct: 81 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA 140
Query: 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211
+V GTPGRV D I+R+ RT IK+ +LDE+DEMLS GFK+QIY ++ LPP QVVL
Sbjct: 141 -QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199
Query: 212 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271
+SAT+P+++LE+TTKFM +PV+ILVK+DELTLEGIKQF+V VE EE+K++ L DLYD+++
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331
+TQAVIFCNT+RKV+ LT K+R FTVS+++ D+PQ+ERD IM EFRSG++R+LI+TD+
Sbjct: 260 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 319
Query: 332 WARGLDVQQ 340
ARG+DVQQ
Sbjct: 320 LARGIDVQQ 328
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/309 (57%), Positives = 237/309 (76%), Gaps = 1/309 (0%)
Query: 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV 91
+ FD + ++LLRG++ YGFE+PSAIQQRA+ PII+G DV+AQAQSGTGKT ++
Sbjct: 20 VYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAA 79
Query: 92 CQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151
Q +DTS + QAL L+PTRELA Q +KV+ A+ +I+ HAC+GG S ED L
Sbjct: 80 LQRIDTSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA 139
Query: 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211
+V GTPGRV D I+R+ RT IK +LDE+DE LS GFK+QIY ++ LPP QVVL
Sbjct: 140 -QIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVL 198
Query: 212 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271
+SAT P+++LE+TTKF +PV+ILVK+DELTLEGIKQF+V VE EE+K++ L DLYD+++
Sbjct: 199 LSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 258
Query: 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331
+TQAVIFCNT+RKV+ LT K+R FTVS+++ D+PQ+ERD I EFRSG++R+LI+TD+
Sbjct: 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDL 318
Query: 332 WARGLDVQQ 340
ARG+DVQQ
Sbjct: 319 LARGIDVQQ 327
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 122/211 (57%), Positives = 167/211 (79%), Gaps = 1/211 (0%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
E + +FD M +K+ LLRGIY YGFEKPSAIQQRA++P IKG DVIAQAQSGTGKT+ A+
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
++ Q ++ +E QAL+L+PTRELA Q +KVILA+GD++ HAC+GG +V +++KL+
Sbjct: 87 SILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146
Query: 150 -HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208
H+V GTPGRV DM+ R+ L + IK+ VLDE+DEMLSRGFKDQIY++++ L +Q
Sbjct: 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 206
Query: 209 VVLISATLPHEILEMTTKFMTDPVKILVKRD 239
VVL+SAT+P ++LE+T KFM DP++ILVK++
Sbjct: 207 VVLLSATMPTDVLEVTKKFMRDPIRILVKKE 237
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 260 bits (664), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 122/215 (56%), Positives = 165/215 (76%), Gaps = 1/215 (0%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
+ + FD M + ++LLRG++ YGFE+PSAIQQRA+MPII+G DV+AQAQSGTGKT ++
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
Q +DTS + QAL+L+PTRELA Q +KV++A+ ++I+ HAC+GG S ED L
Sbjct: 71 AALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 130
Query: 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209
+V GTPGRV D I+R+ RT IK+ +LDE+DEMLS GFK+QIY ++ LPP QV
Sbjct: 131 DA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 189
Query: 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLE 244
VL+SAT+P+++LE+TTKFM +PV+ILVK+DELTLE
Sbjct: 190 VLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLE 224
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 115/207 (55%), Positives = 156/207 (75%), Gaps = 1/207 (0%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
+ + FD M + + LLRG++ YGFE+PSAIQQRA+MPII+G DV+AQAQSGTGKT ++
Sbjct: 18 KVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
Q +DTS + QAL+L+PTRELA Q +KV++A+ ++I+ HAC+GG S ED L
Sbjct: 78 AALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 137
Query: 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209
+V GTPGRV D I+R+ RT IK+ +LDE+DEMLS GFK+QIY ++ LPP QV
Sbjct: 138 DA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQV 196
Query: 210 VLISATLPHEILEMTTKFMTDPVKILV 236
VL+SAT+P+++LE+TTKFM +PV+ILV
Sbjct: 197 VLLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 183/307 (59%), Gaps = 2/307 (0%)
Query: 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC 92
+F+ +K +LL GI++ GFEKPS IQ+ A+ I GRD++A+A++GTGKT+ +
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80
Query: 93 QTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152
+ V ++QALI+ PTRELA QT +V+ +G I GG ++ +DI +L V
Sbjct: 81 EKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 140
Query: 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212
H++ GTPGRV D+ RK L ++DE+D+MLSR FK I + +LPP Q +L
Sbjct: 141 HILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLF 200
Query: 213 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 272
SAT P + E K + P +I + +ELTL+GI Q++ VE E K L L+ L I
Sbjct: 201 SATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKLQI 258
Query: 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW 332
QA+IFCN+ +V+ L +K+ ++ H M Q+ER+ + EFR G R L+ +D+
Sbjct: 259 NQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLL 318
Query: 333 ARGLDVQ 339
RG+D+Q
Sbjct: 319 TRGIDIQ 325
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 110/208 (52%), Positives = 152/208 (73%), Gaps = 1/208 (0%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
E + SFD M + + LLRGIY YGFE PSAIQQRA++P I G DVIAQAQSGTG T+ A+
Sbjct: 12 EIVDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAI 71
Query: 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
++ Q ++ QAL+L+PTRELA Q + V++A+GD++ HAC+GG +V +++ L+
Sbjct: 72 SILQQIELDLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQ 131
Query: 150 -HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208
H++ GTPGRV DM+ R+ L I + VLDE+DEMLSRGF DQIYD+++ L + Q
Sbjct: 132 MEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQ 191
Query: 209 VVLISATLPHEILEMTTKFMTDPVKILV 236
VVL+SAT+P ++LE+T FM DP++ILV
Sbjct: 192 VVLLSATMPSDVLEVTXXFMRDPIRILV 219
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 190/309 (61%), Gaps = 9/309 (2%)
Query: 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALT 90
SFD +G+ +LL+GIY F+KPS IQ+RA +P++ R++IAQ+QSGTGKT+ +LT
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERA-LPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150
+ V+ QA+ L+P+RELA QT +V+ +G F I + V + +
Sbjct: 65 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE----KNKQI 120
Query: 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQV 209
V+ GTPG V D+++RK ++ + IK+ VLDE+D ML +G DQ V R+LP D Q+
Sbjct: 121 NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQL 180
Query: 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269
VL SAT + + K + + + ++ +E+ ++ IKQ ++ + E KFD L +LY
Sbjct: 181 VLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGV 240
Query: 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329
+TI ++IF TK+ + L K++ VS +HGD+ +ERD ++ +FR G ++VLITT
Sbjct: 241 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 300
Query: 330 DVWARGLDV 338
+V ARG+D+
Sbjct: 301 NVLARGIDI 309
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 190/309 (61%), Gaps = 9/309 (2%)
Query: 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALT 90
SFD +G+ +LL+GIY F+KPS IQ+RA +P++ R++IAQ+QSGTGKT+ +LT
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERA-LPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150
+ V+ QA+ L+P+RELA QT +V+ +G F I + V + +
Sbjct: 65 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFE----KNKQI 120
Query: 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQV 209
V+ GTPG V D+++RK ++ + IK+ VLDE+D ML +G DQ V R+LP D Q+
Sbjct: 121 NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQL 180
Query: 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269
VL SAT + + K + + + ++ +E+ ++ IKQ ++ + E KFD L +LY
Sbjct: 181 VLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGL 240
Query: 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329
+TI ++IF TK+ + L K++ VS +HGD+ +ERD ++ +FR G ++VLITT
Sbjct: 241 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 300
Query: 330 DVWARGLDV 338
+V ARG+D+
Sbjct: 301 NVLARGIDI 309
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 193/318 (60%), Gaps = 14/318 (4%)
Query: 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87
++ SF+ + +K LL+G+Y GF +PS IQ+ A +P++ +++IAQ+QSGTGKT+
Sbjct: 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAF 148
Query: 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQAHACVGGK-SVGED 144
L + V+ +++ Q L LSPT ELA QT KVI +G F A+A G K G+
Sbjct: 149 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 208
Query: 145 IRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRY 202
I + +V GTPG V D K K + + IK+ VLDE+D M++ +G +DQ + R
Sbjct: 209 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262
LP + Q++L SAT + + K + DP I +KR+E TL+ IKQ++V + KF
Sbjct: 264 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQA 323
Query: 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 322
LC+LY +TI QA+IFC+T++ WL ++ V+ + G+M ++R A++ FR G
Sbjct: 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 383
Query: 323 TRVLITTDVWARGLDVQQ 340
+VL+TT+V ARG+DV+Q
Sbjct: 384 EKVLVTTNVCARGIDVEQ 401
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 193/318 (60%), Gaps = 14/318 (4%)
Query: 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87
++ SF+ + +K LL+G+Y GF +PS IQ+ A +P++ +++IAQ+QSGTGKT+
Sbjct: 39 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAF 97
Query: 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQAHACVGGK-SVGED 144
L + V+ +++ Q L LSPT ELA QT KVI +G F A+A G K G+
Sbjct: 98 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 157
Query: 145 IRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRY 202
I + +V GTPG V D K K + + IK+ VLDE+D M++ +G +DQ + R
Sbjct: 158 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 212
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262
LP + Q++L SAT + + K + DP I +KR+E TL+ IKQ++V + KF
Sbjct: 213 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQA 272
Query: 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 322
LC+LY +TI QA+IFC+T++ WL ++ V+ + G+M ++R A++ FR G
Sbjct: 273 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 332
Query: 323 TRVLITTDVWARGLDVQQ 340
+VL+TT+V ARG+DV+Q
Sbjct: 333 EKVLVTTNVCARGIDVEQ 350
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 193/318 (60%), Gaps = 14/318 (4%)
Query: 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87
++ SF+ + +K LL+G+Y GF +PS IQ+ A +P++ +++IAQ+QSGTGKT+
Sbjct: 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAF 81
Query: 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQAHACVGGK-SVGED 144
L + V+ +++ Q L LSPT ELA QT KVI +G F A+A G K G+
Sbjct: 82 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 141
Query: 145 IRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRY 202
I + +V GTPG V D K K + + IK+ VLDE+D M++ +G +DQ + R
Sbjct: 142 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 196
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262
LP + Q++L SAT + + K + DP I +KR+E TL+ IKQ++V + KF
Sbjct: 197 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQA 256
Query: 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 322
LC+LY +TI QA+IFC+T++ WL ++ V+ + G+M ++R A++ FR G
Sbjct: 257 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 316
Query: 323 TRVLITTDVWARGLDVQQ 340
+VL+TT+V ARG+DV+Q
Sbjct: 317 EKVLVTTNVCARGIDVEQ 334
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 193/318 (60%), Gaps = 14/318 (4%)
Query: 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87
++ SF+ + +K LL+G+Y GF +PS IQ+ A +P++ +++IAQ+QSGTGKT+
Sbjct: 60 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAF 118
Query: 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQAHACVGGK-SVGED 144
L + V+ +++ Q L LSPT ELA QT KVI +G F A+A G K G+
Sbjct: 119 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 178
Query: 145 IRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRY 202
I + +V GTPG V D K K + + IK+ VLDE+D M++ +G +DQ + R
Sbjct: 179 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 233
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262
LP + Q++L SAT + + K + DP I +KR+E TL+ IKQ++V + KF
Sbjct: 234 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQA 293
Query: 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 322
LC+LY +TI QA+IFC+T++ WL ++ V+ + G+M ++R A++ FR G
Sbjct: 294 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 353
Query: 323 TRVLITTDVWARGLDVQQ 340
+VL+TT+V ARG+DV+Q
Sbjct: 354 EKVLVTTNVCARGIDVEQ 371
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 173/285 (60%), Gaps = 7/285 (2%)
Query: 59 IQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116
IQ++A+ ++ R++I Q+QSGTGKT+ ALT+ VD S + QA+ L+P+RELA Q
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ 204
Query: 117 TEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176
V+ +G + ++ G K K++ +V GTPG V D++KR+ L R I
Sbjct: 205 IMDVVTEMGKYTEVKT--AFGIKDSVPKGAKID--AQIVIGTPGTVMDLMKRRQLDARDI 260
Query: 177 KLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235
K+ VLDE+D ML +G DQ + LP + Q+VL SAT + + +F + +I
Sbjct: 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIR 320
Query: 236 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY 295
+K +EL++EGIKQ ++ + EE K++ L +LY LTI Q++IFC K + + +M
Sbjct: 321 LKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD 380
Query: 296 NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TV+ + G++ +RDAIM FR GT++VL+TT+V ARG+DV Q
Sbjct: 381 GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 425
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 175/308 (56%), Gaps = 11/308 (3%)
Query: 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTV 91
+F+ + + D++L I GFEKP+ IQ + V+P+ +++AQA++G+GKT+ A+ +
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXK-VIPLFLNDEYNIVAQARTGSGKTASFAIPL 65
Query: 92 CQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151
+ V+ ++ ++A+IL+PTRELA Q I ++ N++ GGK++ I+ L++
Sbjct: 66 IELVNENN-GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA 124
Query: 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211
++V GTPGR+ D I R TL + +K +LDE+DE L+ GF + + D +++L
Sbjct: 125 -NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILL 183
Query: 212 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271
SAT P EIL + K+ D I K + I+Q +V V E +F+ LC L
Sbjct: 184 FSATXPREILNLAKKYXGDYSFIKAKIN----ANIEQSYVEVNENE-RFEALCRLLKNKE 238
Query: 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331
++FC TKR L +R F ++HGD+ Q +R+ ++ F+ R+LI TDV
Sbjct: 239 FY-GLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV 297
Query: 332 WARGLDVQ 339
+RG+DV
Sbjct: 298 XSRGIDVN 305
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 179/313 (57%), Gaps = 5/313 (1%)
Query: 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV 91
++ F +K +LLR I GFE PS +Q + I G DV+ QA+SG GKT++ L
Sbjct: 6 MSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 65
Query: 92 CQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH 150
Q ++ + +V L++ TRELA Q K ++ N++ GG S+ +D L+
Sbjct: 66 LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 125
Query: 151 GV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQ 208
H+V GTPGR+ + + K+L + IK +LDE+D+ML + + + +++R P + Q
Sbjct: 126 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQ 185
Query: 209 VVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLY 267
V++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL
Sbjct: 186 VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLL 244
Query: 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLI 327
D L Q VIF + ++ L + + NF ++H MPQ+ER + +F+ R+L+
Sbjct: 245 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 304
Query: 328 TTDVWARGLDVQQ 340
T+++ RG+D+++
Sbjct: 305 ATNLFGRGMDIER 317
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 177/312 (56%), Gaps = 5/312 (1%)
Query: 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC 92
+ F +K +LLR I GFE PS +Q + I G DV+ QA+SG GKT++ L
Sbjct: 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67
Query: 93 QTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHG 151
Q ++ + +V L++ TRELA Q K ++ N++ GG S+ +D L+
Sbjct: 68 QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127
Query: 152 V-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQV 209
H+V GTPGR+ + + K+L + IK +LDE D+ML + + + +++R P + QV
Sbjct: 128 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQV 187
Query: 210 VLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYD 268
++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D
Sbjct: 188 MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLD 246
Query: 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328
L Q VIF + ++ L + + NF ++H MPQ+ER + +F+ R+L+
Sbjct: 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 306
Query: 329 TDVWARGLDVQQ 340
T+++ RG+D+++
Sbjct: 307 TNLFGRGMDIER 318
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/312 (34%), Positives = 177/312 (56%), Gaps = 5/312 (1%)
Query: 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC 92
+ F +K +LLR I GFE PS +Q + I G DV+ QA+SG GKT++ L
Sbjct: 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67
Query: 93 QTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHG 151
Q ++ + +V L++ TRELA Q K ++ N++ GG S+ +D L+
Sbjct: 68 QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 127
Query: 152 V-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQV 209
H+V GTPGR+ + + K+L + IK +LDE D+ML + + + +++R P + QV
Sbjct: 128 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQV 187
Query: 210 VLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYD 268
++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D
Sbjct: 188 MMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLD 246
Query: 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328
L Q VIF + ++ L + + NF ++H MPQ+ER + +F+ R+L+
Sbjct: 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 306
Query: 329 TDVWARGLDVQQ 340
T+++ RG+D+++
Sbjct: 307 TNLFGRGMDIER 318
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 172/337 (51%), Gaps = 34/337 (10%)
Query: 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALT 90
I SF + + + ++ I + +P+ +Q+ A+ PIIK RD++A AQ+G+GKT+ L
Sbjct: 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLP 72
Query: 91 VCQTV--DTSSREVQA----------------LILSPTRELATQTEKVILAIGDFINIQA 132
+ + D ++A L+L+PTRELA Q + ++
Sbjct: 73 ILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRP 132
Query: 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192
GG +G+ IR LE G H++ TPGR+ DM++R + K LVLDE+D ML GF
Sbjct: 133 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGF 192
Query: 193 KDQIYDVYRY--LPPD--LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ 248
+ QI + +PP ++ SAT P EI + F+ + + + V R T E I Q
Sbjct: 193 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 252
Query: 249 FFVAVEREEWKFDTLCDLY-----DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMH 303
V VE E K L DL D+LT+ +F TK+ D L + + + +S+H
Sbjct: 253 KVVWVE-ESDKRSFLLDLLNATGKDSLTL----VFVETKKGADSLEDFLYHEGYACTSIH 307
Query: 304 GDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
GD Q++R+ + +FRSG + +L+ T V ARGLD+
Sbjct: 308 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 165/323 (51%), Gaps = 19/323 (5%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
+ I F + ++D ++ + + G++ P+ IQ+ ++ I GRD++A AQ+G+GKT+ L
Sbjct: 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLL 112
Query: 90 TVCQTVDTSSREV-----QALILSPTRELATQ--TEKVILAIGDFINIQAHACVGGKSVG 142
+ + E+ Q +I+SPTRELA Q E A ++ I GG S
Sbjct: 113 PILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGI--VYGGTSFR 170
Query: 143 EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202
+ G HVV TPGR+ D + R + + +VLDE+D ML GF + + + +
Sbjct: 171 HQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230
Query: 203 --LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260
+ P+ Q ++ SAT P EI M +F+ + V + + +KQ V K+
Sbjct: 231 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN----KY 286
Query: 261 DTLCDLYDTLTITQA---VIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGE 317
L + L+ QA ++F TKR D+L + F +S+HGD Q +R+ + +
Sbjct: 287 AKRSKLIEILS-EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRD 345
Query: 318 FRSGTTRVLITTDVWARGLDVQQ 340
F++G+ +VLI T V +RGLD++
Sbjct: 346 FKNGSMKVLIATSVASRGLDIKN 368
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 85/98 (86%)
Query: 243 LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSM 302
LEGIKQF+V VE EE+K++ L DLYD++++TQAVIFCNT+RKV+ LT K+R FTVS++
Sbjct: 1 LEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI 60
Query: 303 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
+ D+PQ+ERD IM EFRSG++R+LI+TD+ ARG+DVQQ
Sbjct: 61 YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 98
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 122/202 (60%), Gaps = 11/202 (5%)
Query: 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALT 90
SFD +G+ +LL+GIY F+KPS IQ+RA +P++ R++IAQ+QSGTGKT+ +LT
Sbjct: 23 SFDELGLAPELLKGIYAMKFQKPSKIQERA-LPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150
+ V+ QA+ L+P+RELA QT +V+ +G F I + V + K +
Sbjct: 82 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLI-----VPDSFEKNKQ 136
Query: 151 -GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQ 208
V+ GTPG V D+++RK ++ + IK+ VLDE+D ML +G DQ V R+LP D Q
Sbjct: 137 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 196
Query: 209 VVLISATLPHEILEMTTKFMTD 230
+VL SAT + + K + +
Sbjct: 197 LVLFSATFADAVRQYAKKIVPN 218
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 124/203 (61%), Gaps = 1/203 (0%)
Query: 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC 92
F+ +K +LL GI++ G+EKPS IQ+ ++ + GRD++A+A++GTGK+ + +
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 93 QTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHG 151
+ +D +QA+++ PTRELA Q ++ + + + + A GG ++ +DI +L+
Sbjct: 63 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122
Query: 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211
VHVV TPGR+ D+IK+ + ++++VLDE+D++LS+ F + D+ LP + Q++L
Sbjct: 123 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 182
Query: 212 ISATLPHEILEMTTKFMTDPVKI 234
SAT P + + + P +I
Sbjct: 183 YSATFPLSVQKFMNSHLEKPYEI 205
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 120/200 (60%), Gaps = 5/200 (2%)
Query: 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQ 93
F+++ + +L G+ GFE+PS +Q +A+ P+ + G D+I QA+SGTGKT + +
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAI-PLGRCGLDLIVQAKSGTGKTCVFSTIALD 84
Query: 94 TVDTSSREVQALILSPTRELATQTEKVILAIG-DFINIQAHACVGGKSVGEDIRKLEHGV 152
++ + Q LIL+PTRE+A Q VI AIG ++ H +GG + +D +L+
Sbjct: 85 SLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-C 143
Query: 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVL 211
H+ G+PGR+ +I+ L +I+L +LDE+D++L G F++QI +Y LP Q++
Sbjct: 144 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLA 203
Query: 212 ISATLPHEILEMTTKFMTDP 231
+SAT P + TK+M DP
Sbjct: 204 VSATYPEFLANALTKYMRDP 223
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 116/207 (56%), Gaps = 3/207 (1%)
Query: 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC 92
+ F +K +LLR I GFE PS +Q + I G DV+ QA+SG GKT++ L
Sbjct: 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73
Query: 93 QTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHG 151
Q ++ + +V L++ TRELA Q K ++ N++ GG S+ +D L+
Sbjct: 74 QQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN 133
Query: 152 V-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQV 209
H+V GTPGR+ + + K+L + IK +LDE D+ML + + + +++R P + QV
Sbjct: 134 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQV 193
Query: 210 VLISATLPHEILEMTTKFMTDPVKILV 236
++ SATL EI + KFM DP++I V
Sbjct: 194 MMFSATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 14/218 (6%)
Query: 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87
++ SF+ + +K LL+G+Y GF +PS IQ+ A +P++ +++IAQ+QSGTGKT+
Sbjct: 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAF 81
Query: 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQAHACVGGK-SVGED 144
L + V+ +++ Q L LSPT ELA QT KVI +G F A+A G K G+
Sbjct: 82 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 141
Query: 145 IRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRY 202
I + +V GTPG V D K K + + IK+ VLDE+D M++ +G +DQ + R
Sbjct: 142 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 196
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE 240
LP + Q++L SAT + + K + DP I +KR+E
Sbjct: 197 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREE 234
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 127/217 (58%), Gaps = 14/217 (6%)
Query: 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87
++ SF+ + +K LL+G+Y GF +PS IQ+ A +P++ +++IAQ+QSGTGKT+
Sbjct: 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAF 148
Query: 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQAHACVGGK-SVGED 144
L + V+ +++ Q L LSPT ELA QT KVI +G F A+A G K G+
Sbjct: 149 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 208
Query: 145 IRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRY 202
I + +V GTPG V D K K + + IK+ VLDE+D M++ +G +DQ + R
Sbjct: 209 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239
LP + Q++L SAT + + K + DP I +KR+
Sbjct: 264 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 300
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 5/205 (2%)
Query: 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQT 94
F +K ++L ++ G P+ IQ A+ ++G+D+I QA++GTGKT AL + +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 95 VDTS---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151
+ S R+ +AL+L+PTRELA Q + A+ + + A GG G+ L G
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA--VYGGTGYGKQKEALLRG 120
Query: 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211
V TPGR D +++ L +++ VLDE+DEMLS GF++++ + PP Q +L
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 212 ISATLPHEILEMTTKFMTDPVKILV 236
SATLP + ++M +PV I V
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 113/205 (55%), Gaps = 5/205 (2%)
Query: 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQT 94
F +K ++L ++ G P+ I+ A+ ++G+D+I QA++GTGKT AL + +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 95 VDTS---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151
+ S R+ +AL+L+PTRELA Q + A+ + + A GG G+ L G
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA--VYGGTGYGKQKEALLRG 120
Query: 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211
V TPGR D +++ L +++ VLDE+DEMLS GF++++ + PP Q +L
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 212 ISATLPHEILEMTTKFMTDPVKILV 236
SATLP + ++M +PV I V
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 115/208 (55%), Gaps = 1/208 (0%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
E +F +G+ D L Q G+ KP+ IQ A+ ++GRD+I A++G+GKT AL
Sbjct: 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99
Query: 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
+ + + + + AL+L+PTRELA Q + A+G I +Q+ VGG L
Sbjct: 100 PILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 159
Query: 150 HGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208
H++ TPGR+ D ++ K RA+K LV+DE+D +L+ F+ ++ + + +P D +
Sbjct: 160 KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK 219
Query: 209 VVLISATLPHEILEMTTKFMTDPVKILV 236
L SAT+ ++ ++ + +PVK V
Sbjct: 220 TFLFSATMTKKVQKLQRAALKNPVKCAV 247
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 106/210 (50%), Gaps = 4/210 (1%)
Query: 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT 90
A T F + ++ I F KP+ IQ+R + ++G + Q+Q+GTGKT L
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP 61
Query: 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN----IQAHACVGGKSVGEDIR 146
+ + + EVQA+I +PTRELATQ L I F I A +GG + +
Sbjct: 62 IXEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALE 121
Query: 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206
KL H+V GTPGR+ D I+ + L +LV+DE+D L GF + + P D
Sbjct: 122 KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKD 181
Query: 207 LQVVLISATLPHEILEMTTKFMTDPVKILV 236
LQ ++ SAT+P ++ K+ +P + V
Sbjct: 182 LQXLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 19/237 (8%)
Query: 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTS-- 85
I +FD + + + I +++P+ IQ+ A+ I++ RD++A AQ+G+GKT+
Sbjct: 18 ATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAF 77
Query: 86 ---MIALTVCQTVD----TSSREVQALILSPTRELATQTEKVILAIGDF-INIQAHACV- 136
+I VCQ ++ + + + LIL+PTRELA Q ++ F +N +CV
Sbjct: 78 LIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ---ILSESQKFSLNTPLRSCVV 134
Query: 137 -GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQ 195
GG IR+++ G H++ TPGR+ D I++ + K +VLDE+D ML GF+ Q
Sbjct: 135 YGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQ 194
Query: 196 IYDVYR--YLPPDL--QVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ 248
I + +P + Q ++ SAT P EI ++ F+ + + + V R T + IKQ
Sbjct: 195 IRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 155/295 (52%), Gaps = 21/295 (7%)
Query: 46 RGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105
+ I + GF+ + +Q + + +++G++V+ +A++G+GKT+ A+ + + +++L
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSL 60
Query: 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM 165
+++PTREL Q I IG +++ + GG I ++ + +V TPGR+ D+
Sbjct: 61 VVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNA-DIVVATPGRLLDL 119
Query: 166 IKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225
+ + + +++++DE+D M GF D I + L SAT+P EI ++
Sbjct: 120 WSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVK 179
Query: 226 KFMTDPVKILVKRDELTLEGIKQFFVAVEREEW--KFDTLCDLYDTLTITQAVIFCNTKR 283
F+T+ +I + L ++ FV V +++W K L + D ++F T+
Sbjct: 180 DFITNYEEIEAC---IGLANVEHKFVHV-KDDWRSKVQALRENKDK----GVIVFVRTRN 231
Query: 284 KVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338
+V L +R ++ + + GD+PQ R+ + FR G +LITTDV +RGLD+
Sbjct: 232 RVAKL---VRLFDNAIE-LRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDI 282
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 5/217 (2%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
+ + +F +++ I + F +P+AIQ + + G D++ AQ+G+GKT L
Sbjct: 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85
Query: 90 TVCQTVDTSSREVQA-----LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144
++ + L+L+PTRELA Q ++V +++ GG G
Sbjct: 86 PAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 145
Query: 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204
IR LE GV + TPGR+ D ++ R LVLDE+D ML GF+ QI + +
Sbjct: 146 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 205
Query: 205 PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL 241
PD Q ++ SAT P E+ ++ F+ D + I + EL
Sbjct: 206 PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALEL 242
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 111/207 (53%), Gaps = 7/207 (3%)
Query: 36 DAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95
DA DLL+ I + G KP+ IQ +A I++G D+I AQ+GTGKT + +
Sbjct: 23 DAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL 82
Query: 96 DTS--SREVQA----LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149
D+ SRE + L+L+PTRELA E + +++ GG++ I +
Sbjct: 83 DSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDIS 141
Query: 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209
GV ++ TPGR+ D+ ++ R+I LV+DE+D+ML F+ QI + + PD Q
Sbjct: 142 KGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQT 201
Query: 210 VLISATLPHEILEMTTKFMTDPVKILV 236
V+ SAT P + ++ ++ DP+ + V
Sbjct: 202 VMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 5/210 (2%)
Query: 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89
+ + +F +++ I + F +P+AIQ + + G D++ AQ+G+GKT L
Sbjct: 40 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 99
Query: 90 TVCQTVDTSSREVQA-----LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144
++ + L+L+PTRELA Q ++V +++ GG G
Sbjct: 100 PAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQ 159
Query: 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204
IR LE GV + TPGR+ D ++ R LVLDE+D ML GF+ QI + +
Sbjct: 160 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 219
Query: 205 PDLQVVLISATLPHEILEMTTKFMTDPVKI 234
PD Q ++ SAT P E+ ++ F+ D + I
Sbjct: 220 PDRQTLMWSATWPKEVRQLAEDFLKDYIHI 249
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 119/219 (54%), Gaps = 21/219 (9%)
Query: 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT 90
TSF ++ + ++ L+ I + GF + IQ +++ P+++GRD++A A++G+GKT +
Sbjct: 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 111
Query: 91 VCQTVDT----SSREVQALILSPTRELATQTEKVILAIGDFINIQAHA---CVGGKSVGE 143
+ + LILSPTRELA QT V + + + H +GG +
Sbjct: 112 AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGV---LKELMTHHVHTYGLIMGGSNRSA 168
Query: 144 DIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202
+ +KL +G++++ TPGR+ D ++ + ++ LV+DE+D +L GF++++ + +
Sbjct: 169 EAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL 241
LP Q +L SAT T+ + D +I +K++ L
Sbjct: 229 LPTRRQTMLFSAT--------QTRKVEDLARISLKKEPL 259
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 43/332 (12%)
Query: 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQ----TVD 96
++ + I + F + +QQ+ + PI+ DVIA+A++GTGKT + + Q T
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 90
Query: 97 TSSREVQALILSPTRELATQTEKVILAIGDF-INIQAHACV---GGKSVGEDIRKLEH-G 151
S V+A+I++PTR+LA Q E + I D ++ +ACV GG + K+
Sbjct: 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 152 VHVVSGTPGRVCDMIKRKTLRT-RAIKLLVLDESDEMLSRGFKDQIYDVYRYL------- 203
++V TPGR+ D++++ + + R + VLDE+D +L GF+D + + L
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 210
Query: 204 PPDLQVVLISATLPHEILEMTTKFMTDPVKILV----KRDELTLEGIKQ----------- 248
+++ +L SATL ++ ++ M + + K + E I Q
Sbjct: 211 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 270
Query: 249 FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGD 305
F AVE + + Y +A+IF T + +L ++ + + HG
Sbjct: 271 IFAAVEHIKKQIKERDSNY------KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324
Query: 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337
+ Q +R +++ F+ + +L+ TDV ARG+D
Sbjct: 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMD 356
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 43/332 (12%)
Query: 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQ----TVD 96
++ + I + F + +QQ+ + PI+ DVIA+A++GTGKT + + Q T
Sbjct: 82 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 141
Query: 97 TSSREVQALILSPTRELATQTEKVILAIGDF-INIQAHACV---GGKSVGEDIRKLEH-G 151
S V+A+I++PTR+LA Q E + I D ++ +ACV GG + K+
Sbjct: 142 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 201
Query: 152 VHVVSGTPGRVCDMIKRKTLRT-RAIKLLVLDESDEMLSRGFKDQIYDVYRYL------- 203
++V TPGR+ D++++ + + R + VLDE+D +L GF+D + + L
Sbjct: 202 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 261
Query: 204 PPDLQVVLISATLPHEILEMTTKFMTDPVKILV----KRDELTLEGIKQ----------- 248
+++ +L SATL ++ ++ M + + K + E I Q
Sbjct: 262 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 321
Query: 249 FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGD 305
F AVE + + Y +A+IF T + +L ++ + + HG
Sbjct: 322 IFAAVEHIKKQIKERDSNY------KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 375
Query: 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337
+ Q +R +++ F+ + +L+ TDV ARG+D
Sbjct: 376 ITQNKRTSLVKRFKKDESGILVCTDVGARGMD 407
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 43/332 (12%)
Query: 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQ----TVD 96
++ + I + F + +QQ+ + PI+ DVIA+A++GTGKT + + Q T
Sbjct: 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF 90
Query: 97 TSSREVQALILSPTRELATQTEKVILAIGDF-INIQAHACV---GGKSVGEDIRKLEH-G 151
S V+A+I++PTR+LA Q E + I D ++ +ACV GG + K+
Sbjct: 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 152 VHVVSGTPGRVCDMIKRKTLRT-RAIKLLVLDESDEMLSRGFKDQIYDVYRYL------- 203
++V TPGR+ D++++ + + R + VLDE+D +L GF+D + + L
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 210
Query: 204 PPDLQVVLISATLPHEILEMTTKFMTDPVKILV----KRDELTLEGIKQ----------- 248
+++ +L SATL ++ ++ M + + K + E I Q
Sbjct: 211 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 270
Query: 249 FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGD 305
F AVE + + Y +A+IF T + +L ++ + + HG
Sbjct: 271 IFAAVEHIKKQIKERDSNY------KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324
Query: 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337
+ Q +R +++ F+ + +L+ TDV ARG+D
Sbjct: 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMD 356
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 67/100 (67%)
Query: 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS 300
LTL I+Q++V E + K+ LC++Y ++TI QA+IFC T+R WLT +M VS
Sbjct: 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 62
Query: 301 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
+ G++ ++R +I+ FR G +VLITT+V ARG+DV+Q
Sbjct: 63 LLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQ 102
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 113/214 (52%), Gaps = 6/214 (2%)
Query: 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87
V IT F + L+G+ + + + IQ++ + ++G+DV+ A++G+GKT
Sbjct: 20 NVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79
Query: 88 ALTVCQTVD----TSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE 143
+ V + + TS+ + LI+SPTRELA QT +V+ +G + A +GGK +
Sbjct: 80 LVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH 139
Query: 144 DIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202
+ ++ + ++++ TPGR+ M + + +++LVLDE+D +L GF D + V
Sbjct: 140 EAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198
Query: 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236
LP Q +L SAT + ++ + +P + V
Sbjct: 199 LPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 66/100 (66%)
Query: 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT 298
+E+ ++ IKQ ++ + E KFD L +LY +TI ++IF TK+ + L K++
Sbjct: 2 NEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHE 61
Query: 299 VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338
VS +HGD+ +ERD ++ +FR G ++VLITT+V ARG+D+
Sbjct: 62 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 101
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%)
Query: 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT 298
+E+ ++ IKQ + + E KFD L +LY TI ++IF TK+ + L K++
Sbjct: 3 NEVNVDAIKQLYXDCKNEADKFDVLTELYGVXTIGSSIIFVATKKTANVLYGKLKSEGHE 62
Query: 299 VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338
VS +HGD+ +ERD ++ +FR G ++VLITT+V ARG+D+
Sbjct: 63 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 102
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%)
Query: 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT 298
+E+ ++ IKQ + + E KFD L +LY TI ++IF TK+ + L K++
Sbjct: 4 NEVNVDAIKQLYXDCKNEADKFDVLTELYGLXTIGSSIIFVATKKTANVLYGKLKSEGHE 63
Query: 299 VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338
VS +HGD+ +ERD ++ +FR G ++VLITT+V ARG+D+
Sbjct: 64 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 103
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 230 DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT 289
DP +I + +ELTL+G+ Q++ V E K L L+ L I Q++IFCN+ ++V+ L
Sbjct: 4 DPYEINLM-EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLA 61
Query: 290 EKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339
+K+ ++ +H M Q+ R+ + +FR+G R L+ TD++ RG+D+Q
Sbjct: 62 KKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQ 111
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 94/171 (54%), Gaps = 13/171 (7%)
Query: 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-QTVDTS 98
I LL+ I GF+ P+ IQ +A+ ++ GR+++A A +G+GKT ++ + Q +
Sbjct: 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA 95
Query: 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAH----ACVGGKSVGEDIRKLEHGVHV 154
++ +ALI+SPTRELA+Q + ++ I + + H A V K G K +
Sbjct: 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGP---KSSKKFDI 152
Query: 155 VSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEML---SRGFKDQIYDVY 200
+ TP R+ ++K+ + +++ LV+DESD++ GF+DQ+ ++
Sbjct: 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIF 203
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS 300
LT I+ + V REE KF L D+ T +IFC TK V+ LT+++ +
Sbjct: 5 LTTRNIEHAVIQV-REENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCD 63
Query: 301 SMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
+HG M Q++R +M EF+ G R L+ TDV ARG+D++
Sbjct: 64 KIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIEN 103
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 318
+ + L DL + +A++F TK + + + + + ++HGDM Q ER+ +MG F
Sbjct: 15 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAF 74
Query: 319 RSGTTRVLITTDVWARGLDVQQ 340
R G RVL+ TDV ARGLD+ Q
Sbjct: 75 RQGEVRVLVATDVAARGLDIPQ 96
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 318
+ + L DL + +A++F TK + + + + + ++HGD+ Q ER+ ++G F
Sbjct: 18 RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAF 77
Query: 319 RSGTTRVLITTDVWARGLDVQQ 340
R G RVL+ TDV ARGLD+ Q
Sbjct: 78 RQGEVRVLVATDVAARGLDIPQ 99
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 242 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSS 301
+L G++Q++V ++ E K L DL D L Q VIF + ++ L + + NF +
Sbjct: 2 SLHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 60
Query: 302 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
+H MPQ+ER + +F+ R+L+ T+++ RG+D+++
Sbjct: 61 IHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 99
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 242 TLEGIKQFFVAVEREEWKFDTLCDLY-----DTLTITQAVIFCNTKRKVDWLTEKMRGYN 296
T E I Q V VE + K L DL D+LT+ +F TK+ D L + +
Sbjct: 16 TSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTL----VFVETKKGADSLEDFLYHEG 70
Query: 297 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
+ +S+HGD Q++R+ + +FRSG + +L+ T V ARGLD+
Sbjct: 71 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 114
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 246 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 305
I Q++ + E K L L T++++F + +V L +R + G+
Sbjct: 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGE 63
Query: 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338
M Q +R+ + G VL+ TDV ARG+D+
Sbjct: 64 MVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI 96
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 276 VIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335
+IF K VD + E + ++HG Q+ER + FR G VL+ TDV ++G
Sbjct: 58 LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 117
Query: 336 LD 337
LD
Sbjct: 118 LD 119
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 297 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341
F + MHG + Q+E+D +M EF G +L++T V G+DV +A
Sbjct: 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRA 658
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 274 QAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330
+A+IF T + +L ++ + + HG + Q +R +++ F+ + +L+ TD
Sbjct: 35 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 94
Query: 331 VWARGLD 337
V ARG+D
Sbjct: 95 VGARGMD 101
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 274 QAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330
+A+IF T + +L ++ + + HG + Q +R +++ F+ + +L+ TD
Sbjct: 35 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 94
Query: 331 VWARGLD 337
V ARG+D
Sbjct: 95 VGARGMD 101
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 274 QAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330
+A+IF T + +L ++ + + HG + Q +R +++ F+ + +L+ TD
Sbjct: 35 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 94
Query: 331 VWARGLD 337
V ARG+D
Sbjct: 95 VGARGMD 101
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL--------TITQAVIFCNTKRKV----DWL 288
L E K E E++ + L L +T+ + +IF T++ W+
Sbjct: 361 LFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWI 420
Query: 289 TEKMRGYNFTVSSMH----------GDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338
TE + V + H M Q E+ ++ +FR+G +LI T V GLD+
Sbjct: 421 TENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 480
Query: 339 QQA 341
++
Sbjct: 481 KEC 483
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93
Y KP Q +P +KG++ I A +G GKT ++L +C+
Sbjct: 9 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT-FVSLLICE 50
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93
Y KP Q +P +KG++ I A +G GKT ++L +C+
Sbjct: 8 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT-FVSLLICE 49
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93
KP Q +P +KG++ I A +G GKT ++L +C+
Sbjct: 4 KPRNYQLELALPAMKGKNTIICAPTGCGKT-FVSLLICE 41
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/92 (18%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 202 YLPPDLQVVLISATL-PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260
Y D+ + ++ TL E+++ + FM+ + I++K+ + + G+ F + E W
Sbjct: 460 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIW-- 517
Query: 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 292
+C ++ + ++ + + +W TE+
Sbjct: 518 --MCIVFAYIGVSVVLFLVSRFSPYEWHTEEF 547
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 281 TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TK+ + LT+ ++ V+ +H ++ ER I+ + R G VL+ ++ GLD+ +
Sbjct: 454 TKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 281 TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TK+ + LT+ ++ V+ +H ++ ER I+ + R G VL+ ++ GLD+ +
Sbjct: 454 TKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 281 TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TK+ + LT+ ++ V+ +H ++ ER I+ + R G VL+ ++ GLD+ +
Sbjct: 454 TKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 281 TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TK+ + LT+ ++ V+ +H ++ ER I+ + R G VL+ ++ GLD+ +
Sbjct: 453 TKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 512
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 281 TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TK+ + LT+ ++ V+ +H ++ ER I+ + R G VL+ ++ GLD+ +
Sbjct: 479 TKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 538
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/63 (15%), Positives = 32/63 (50%)
Query: 275 AVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334
+I+CN++ KV+ +++ + ++ H + R + +F+ ++++ T +
Sbjct: 239 GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGX 298
Query: 335 GLD 337
G++
Sbjct: 299 GIN 301
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 22/110 (20%)
Query: 253 VEREEWKFDTLCDLYDTLT--------ITQAVIFCNTKRKV----DWLTEKMRGYNFTVS 300
E E++ + L L +T+ + +IF T++ W+T+ + V
Sbjct: 123 AENPEYENEKLTKLRNTIXEHFTRTEESARGIIFTKTRQSAYALSQWITDNKKFAEVGVK 182
Query: 301 SMH----------GDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
+ H Q E+ ++ +FR+G +LI T V GLD+++
Sbjct: 183 AHHLIGAGHSSEFKPXTQNEQREVISKFRTGKINLLIATTVAEEGLDIKE 232
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 281 TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TK+ + LT+ ++ V+ +H ++ ER I+ + R G VL+ ++ GLD+ +
Sbjct: 460 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 519
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 281 TKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
TK+ + LT+ ++ V+ +H ++ ER I+ + R G VL+ ++ GLD+ +
Sbjct: 454 TKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPE 513
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/63 (15%), Positives = 32/63 (50%)
Query: 275 AVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334
+I+CN++ KV+ +++ + ++ H + R + +F+ ++++ T +
Sbjct: 239 GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298
Query: 335 GLD 337
G++
Sbjct: 299 GIN 301
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93
KP Q +P KG++ I A +G GKT ++L +C+
Sbjct: 4 KPRNYQLELALPAKKGKNTIICAPTGCGKT-FVSLLICE 41
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340
+ Q+E+ I+ EF G VL+ T V GLDV +
Sbjct: 403 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPE 437
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 297 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341
F + ++ ++ER+ I+ FR+G R ++++ V G+DV A
Sbjct: 369 FLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDA 413
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 297 FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341
F + ++ ++ER+ I+ FR+G R ++++ V G+DV A
Sbjct: 134 FLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDA 178
>pdb|1HEI|A Chain A, Structure Of The Hepatitis C Virus Rna Helicase Domain
pdb|1HEI|B Chain B, Structure Of The Hepatitis C Virus Rna Helicase Domain
Length = 451
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 276 VIFCNTKRKVDWLTEKM-----------RGYNFTVSSMHGDMPQKERDAIMGEF 318
+IFC++K+K D L K+ RG + +V +GD+ DA+M F
Sbjct: 186 LIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVSTDALMTGF 239
>pdb|2JLU|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLU|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLV|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLV|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLW|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLW|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLX|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Vanadate
pdb|2JLX|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Vanadate
pdb|2JLZ|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp
pdb|2JLZ|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp
Length = 451
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
K R I G GKT I ++ + + R ++ LIL+PTR +A + E+ + +
Sbjct: 18 KKRLTIMDLHPGAGKTKRILPSIVR--EALKRRLRTLILAPTRVVAAEMEEALRGL 71
>pdb|2JLS|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Adp
Length = 451
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
K R I G GKT I ++ + + R ++ LIL+PTR +A + E+ + +
Sbjct: 18 KKRLTIMDLHPGAGKTKRILPSIVR--EALKRRLRTLILAPTRVVAAEMEEALRGL 71
>pdb|2JLR|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Amppnp
Length = 451
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
K R I G GKT I ++ + + R ++ LIL+PTR +A + E+ + +
Sbjct: 18 KKRLTIMDLHPGAGKTKRILPSIVR--EALKRRLRTLILAPTRVVAAEMEEALRGL 71
>pdb|3K7X|A Chain A, Crystal Structure Of The Lin0763 Protein From Listeria
Innocua. Northeast Structural Genomics Consortium Target
Lkr23
Length = 349
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 200 YRYLPPDLQVVLISATLPHEI-----LEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254
Y+ P + +++S L +E+ LE K K+LV+ D +GI +
Sbjct: 146 YKNTPVNAPFIILSCWLYNELNETKYLEWAXKTYEWQTKVLVREDGFVEDGINRLEDGTI 205
Query: 255 REEWKFDTLCDLY-----DTLTITQAVIFCNTKRK 284
EWKF +Y + IT+ I+ +T K
Sbjct: 206 DYEWKFTYNQGVYIGANLELYRITKEAIYLDTANK 240
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
K R I G GKT I ++ + + R ++ LIL+PTR +A + E+ + +
Sbjct: 186 KKRLTIMDLHPGAGKTKRILPSIVR--EALKRRLRTLILAPTRVVAAEMEEALRGL 239
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
K R I G GKT I ++ + + R ++ LIL+PTR +A + E+ + +
Sbjct: 185 KKRLTIMDLHPGAGKTKRILPSIVR--EALKRRLRTLILAPTRVVAAEMEEALRGL 238
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 22/197 (11%)
Query: 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86
E E+I+S+ A+GI + + G E+ Q AV + G++++ + GKT +
Sbjct: 5 ELAESISSY-AVGI-------LKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLL 56
Query: 87 IALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146
+ + + + +L + P R LA + + F + G S G+
Sbjct: 57 AEMAMVREAIKGGK---SLYVVPLRALAGEKYE------SFKKWEKIGLRIGISTGDYES 107
Query: 147 KLEH--GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS--RGFKDQIY-DVYR 201
+ EH ++ T + +I+ + +A+ LV+DE + S RG +I R
Sbjct: 108 RDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR 167
Query: 202 YLPPDLQVVLISATLPH 218
+ L+V+ +SAT P+
Sbjct: 168 RMNKALRVIGLSATAPN 184
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
K R I G GKT I ++ + + R ++ LIL+PTR +A + E+ + +
Sbjct: 185 KKRLTIMDLHPGAGKTKRILPSIVR--EALKRRLRTLILAPTRVVAAEMEEALRGL 238
>pdb|3KQ4|A Chain A, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|C Chain C, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|E Chain E, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 393
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQ----------------SGTGKTS 85
D +L I Q F P +I Q ++P +KG+ + Q G G TS
Sbjct: 227 DMILNEIKQGKFHNPMSIAQ--ILPSLKGKTYLDVPQVTCSPDHEVQPTLPSNPGPGPTS 284
Query: 86 MIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
+TV T++ R V+ L+ + T ++ ++ V+L +
Sbjct: 285 ASNITVIYTINNQLRGVE-LLFNETINVSVKSGSVLLVV 322
>pdb|2PMV|A Chain A, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|B Chain B, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|C Chain C, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|D Chain D, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
Length = 399
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQ----------------SGTGKTS 85
D +L I Q F P +I Q ++P +KG+ + Q G G TS
Sbjct: 233 DMILNEIKQGKFHNPMSIAQ--ILPSLKGKTYLDVPQVTCSPDHEVQPTLPSNPGPGPTS 290
Query: 86 MIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124
+TV T++ R V+ L+ + T ++ ++ V+L +
Sbjct: 291 ASNITVIYTINNQLRGVE-LLFNETINVSVKSGSVLLVV 328
>pdb|1PDZ|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase
pdb|1PDY|A Chain A, X-Ray Structure And Catalytic Mechanism Of Lobster Enolase
Length = 434
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 194 DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV 253
DQ+ D+Y D +V I + E +K MT I + D+LT+ K+ AV
Sbjct: 276 DQLRDMYMEFCKDFPIVSIEDPFDQDDWETWSK-MTSGTTIQIVGDDLTVTNPKRITTAV 334
Query: 254 EREEWK 259
E++ K
Sbjct: 335 EKKACK 340
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 303 HGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341
HG M ++E + +M +F VL+ T + G+D+ A
Sbjct: 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 883
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQ 195
+GG+ +I LE+ + SGT G+V M RKT A+K +M G K++
Sbjct: 15 IGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVK--------QMRRSGNKEE 66
Query: 196 IYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD 230
+ DL VVL S P+ I++ F+T+
Sbjct: 67 NKRILM----DLDVVLKSHDCPY-IVQCFGTFITN 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,959,022
Number of Sequences: 62578
Number of extensions: 348434
Number of successful extensions: 1123
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 110
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)