Query 018574
Match_columns 354
No_of_seqs 168 out of 1685
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 10:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 2.6E-63 5.6E-68 389.4 27.3 342 12-353 6-347 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 3.1E-61 6.8E-66 393.5 27.3 326 27-353 55-381 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 2.4E-59 5.2E-64 406.3 29.9 321 33-354 91-423 (519)
4 COG0513 SrmB Superfamily II DN 100.0 9.1E-57 2E-61 406.4 36.0 322 33-354 29-355 (513)
5 PRK04837 ATP-dependent RNA hel 100.0 2.9E-55 6.2E-60 392.8 37.3 324 29-353 4-336 (423)
6 PRK11776 ATP-dependent RNA hel 100.0 3.5E-55 7.7E-60 396.4 37.2 320 32-353 3-323 (460)
7 PRK10590 ATP-dependent RNA hel 100.0 7.2E-55 1.6E-59 392.5 36.7 319 34-353 2-326 (456)
8 PTZ00110 helicase; Provisional 100.0 7.8E-55 1.7E-59 397.6 36.7 327 26-353 123-458 (545)
9 PRK11634 ATP-dependent RNA hel 100.0 6.2E-55 1.3E-59 401.5 36.2 322 31-353 4-326 (629)
10 PRK04537 ATP-dependent RNA hel 100.0 3.4E-54 7.3E-59 394.6 36.3 321 32-353 8-338 (572)
11 PRK11192 ATP-dependent RNA hel 100.0 1.4E-53 3E-58 383.8 38.2 320 34-353 2-326 (434)
12 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-53 3.1E-58 388.5 37.7 327 25-353 113-449 (518)
13 PTZ00424 helicase 45; Provisio 100.0 1.9E-52 4E-57 374.2 38.4 323 31-353 26-348 (401)
14 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-53 2.5E-58 361.5 28.6 330 24-354 236-599 (673)
15 KOG0326 ATP-dependent RNA heli 100.0 3.5E-55 7.6E-60 349.4 17.2 324 29-354 81-404 (459)
16 PRK01297 ATP-dependent RNA hel 100.0 6.7E-52 1.4E-56 375.8 38.3 323 30-353 84-416 (475)
17 KOG0338 ATP-dependent RNA heli 100.0 5.9E-54 1.3E-58 362.0 21.9 322 32-353 180-507 (691)
18 KOG0343 RNA Helicase [RNA proc 100.0 8.4E-53 1.8E-57 358.2 26.7 322 30-353 66-396 (758)
19 KOG0340 ATP-dependent RNA heli 100.0 3.6E-52 7.8E-57 336.6 26.1 323 30-353 4-335 (442)
20 KOG0345 ATP-dependent RNA heli 100.0 1.5E-51 3.2E-56 344.5 29.2 320 33-353 4-338 (567)
21 KOG0342 ATP-dependent RNA heli 100.0 6.4E-51 1.4E-55 342.7 27.2 322 31-353 80-411 (543)
22 KOG0335 ATP-dependent RNA heli 100.0 5E-51 1.1E-55 348.5 25.4 327 26-353 67-418 (482)
23 KOG0336 ATP-dependent RNA heli 100.0 3E-50 6.5E-55 331.4 23.2 326 27-354 213-547 (629)
24 KOG0346 RNA helicase [RNA proc 100.0 1.5E-49 3.3E-54 329.7 23.3 320 33-353 19-384 (569)
25 KOG0339 ATP-dependent RNA heli 100.0 4.7E-48 1E-52 326.2 27.5 330 24-353 214-549 (731)
26 KOG0332 ATP-dependent RNA heli 100.0 1.3E-48 2.8E-53 318.0 22.5 322 28-352 85-410 (477)
27 KOG0348 ATP-dependent RNA heli 100.0 5.2E-48 1.1E-52 327.9 25.3 329 24-353 127-528 (708)
28 KOG0341 DEAD-box protein abstr 100.0 1.8E-49 3.9E-54 324.8 14.4 329 23-353 160-502 (610)
29 KOG0327 Translation initiation 100.0 2.1E-47 4.5E-52 313.0 23.4 324 27-353 20-344 (397)
30 KOG0347 RNA helicase [RNA proc 100.0 6.7E-48 1.4E-52 328.3 17.8 323 30-354 178-545 (731)
31 TIGR03817 DECH_helic helicase/ 100.0 6.7E-45 1.4E-49 341.5 33.4 305 40-353 21-360 (742)
32 KOG0334 RNA helicase [RNA proc 100.0 4E-45 8.7E-50 333.9 24.9 334 19-352 351-693 (997)
33 KOG0337 ATP-dependent RNA heli 100.0 1.7E-44 3.6E-49 298.3 20.5 320 32-352 20-341 (529)
34 PLN03137 ATP-dependent DNA hel 100.0 7.3E-43 1.6E-47 326.9 32.9 309 33-354 435-762 (1195)
35 KOG4284 DEAD box protein [Tran 100.0 1.4E-43 2.9E-48 307.3 22.2 322 30-352 22-352 (980)
36 TIGR00614 recQ_fam ATP-depende 100.0 2E-42 4.4E-47 312.6 29.8 288 50-353 6-307 (470)
37 KOG0350 DEAD-box ATP-dependent 100.0 1.3E-42 2.9E-47 292.8 22.3 321 32-353 126-514 (620)
38 PRK11057 ATP-dependent DNA hel 100.0 2E-41 4.3E-46 313.8 31.9 297 40-353 9-317 (607)
39 PRK13767 ATP-dependent helicas 100.0 8.3E-41 1.8E-45 320.0 30.7 309 40-353 18-371 (876)
40 TIGR01389 recQ ATP-dependent D 100.0 1.4E-40 3E-45 309.2 30.9 292 47-353 4-305 (591)
41 PRK02362 ski2-like helicase; P 100.0 2.1E-40 4.6E-45 314.5 28.4 302 34-346 2-353 (737)
42 KOG0344 ATP-dependent RNA heli 100.0 7.7E-41 1.7E-45 288.3 21.4 328 26-353 125-469 (593)
43 COG1201 Lhr Lhr-like helicases 100.0 5.3E-40 1.1E-44 301.5 27.7 308 40-353 8-335 (814)
44 PRK00254 ski2-like helicase; P 100.0 9.4E-40 2E-44 309.3 28.8 302 34-346 2-345 (720)
45 PRK09401 reverse gyrase; Revie 100.0 3.2E-39 6.8E-44 313.0 31.5 289 45-351 70-410 (1176)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.3E-39 1.1E-43 296.6 30.6 296 44-352 4-365 (844)
47 TIGR00580 mfd transcription-re 100.0 2.7E-38 5.8E-43 299.8 32.1 294 39-351 435-741 (926)
48 PRK10689 transcription-repair 100.0 6.1E-38 1.3E-42 303.5 31.0 291 41-350 587-894 (1147)
49 PRK01172 ski2-like helicase; P 100.0 5.3E-38 1.2E-42 296.2 28.2 302 34-350 2-338 (674)
50 PRK10917 ATP-dependent DNA hel 100.0 4.3E-37 9.4E-42 287.8 32.2 293 42-352 248-561 (681)
51 PRK14701 reverse gyrase; Provi 100.0 2.4E-37 5.2E-42 306.0 31.0 294 42-351 66-412 (1638)
52 COG0514 RecQ Superfamily II DN 100.0 1.4E-37 3E-42 275.8 24.9 297 46-354 7-312 (590)
53 TIGR01054 rgy reverse gyrase. 100.0 9.1E-37 2E-41 296.4 30.8 293 43-352 66-410 (1171)
54 TIGR00643 recG ATP-dependent D 100.0 7.8E-36 1.7E-40 277.8 31.6 291 42-351 223-537 (630)
55 KOG0329 ATP-dependent RNA heli 100.0 1.6E-37 3.4E-42 241.2 14.5 285 33-353 42-329 (387)
56 PRK09751 putative ATP-dependen 100.0 5.4E-36 1.2E-40 291.8 28.4 276 75-353 1-358 (1490)
57 PHA02558 uvsW UvsW helicase; P 100.0 6.3E-36 1.4E-40 271.7 25.6 283 54-353 113-426 (501)
58 COG1111 MPH1 ERCC4-like helica 100.0 1.5E-34 3.4E-39 245.8 28.4 294 54-352 14-455 (542)
59 COG1202 Superfamily II helicas 100.0 1.8E-34 4E-39 247.9 22.6 303 31-342 192-510 (830)
60 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-33 3.3E-38 264.9 30.9 279 57-352 4-292 (819)
61 PRK11664 ATP-dependent RNA hel 100.0 2.3E-33 4.9E-38 264.4 29.6 279 57-352 7-295 (812)
62 COG1205 Distinct helicase fami 100.0 1.4E-33 3.1E-38 266.1 26.3 309 40-351 55-393 (851)
63 PRK13766 Hef nuclease; Provisi 100.0 1E-32 2.2E-37 265.2 31.6 296 54-353 14-454 (773)
64 PHA02653 RNA helicase NPH-II; 100.0 3.5E-33 7.6E-38 256.5 26.5 277 57-348 166-472 (675)
65 TIGR01587 cas3_core CRISPR-ass 100.0 6.2E-33 1.3E-37 244.3 23.7 273 72-351 1-306 (358)
66 COG1204 Superfamily II helicas 100.0 4.3E-33 9.3E-38 259.3 23.2 301 38-345 14-363 (766)
67 cd00268 DEADc DEAD-box helicas 100.0 2.1E-32 4.6E-37 221.8 23.4 200 35-234 1-202 (203)
68 TIGR00603 rad25 DNA repair hel 100.0 2.3E-32 5E-37 250.2 24.4 275 55-351 255-571 (732)
69 TIGR03158 cas3_cyano CRISPR-as 100.0 1.8E-31 3.8E-36 232.4 28.8 278 59-353 1-346 (357)
70 KOG0354 DEAD-box like helicase 100.0 5.5E-32 1.2E-36 243.3 25.2 297 53-353 60-505 (746)
71 PRK12898 secA preprotein trans 100.0 2.5E-31 5.4E-36 240.7 27.5 290 51-353 100-560 (656)
72 TIGR03714 secA2 accessory Sec 100.0 7.6E-31 1.7E-35 240.4 27.8 290 55-352 68-511 (762)
73 COG1061 SSL2 DNA or RNA helica 100.0 8.4E-31 1.8E-35 233.6 23.4 279 55-353 36-363 (442)
74 PRK09200 preprotein translocas 100.0 2.4E-30 5.3E-35 239.2 26.6 291 51-353 75-515 (790)
75 COG1200 RecG RecG-like helicas 100.0 2.6E-30 5.7E-35 229.2 25.2 294 38-349 245-560 (677)
76 TIGR00963 secA preprotein tran 100.0 5.4E-30 1.2E-34 233.4 27.8 290 51-353 53-491 (745)
77 KOG0353 ATP-dependent DNA heli 100.0 6.2E-31 1.4E-35 216.0 17.6 311 33-354 69-399 (695)
78 KOG0351 ATP-dependent DNA heli 100.0 3.1E-30 6.7E-35 242.1 24.7 297 47-354 256-567 (941)
79 KOG0349 Putative DEAD-box RNA 100.0 1.3E-29 2.8E-34 211.4 18.2 250 103-352 288-588 (725)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 8.4E-29 1.8E-33 226.2 21.6 290 51-348 106-447 (1230)
81 KOG0352 ATP-dependent DNA heli 100.0 1.7E-29 3.7E-34 210.2 15.2 295 43-353 6-336 (641)
82 COG1197 Mfd Transcription-repa 100.0 1E-27 2.3E-32 224.3 27.8 292 38-348 577-881 (1139)
83 PRK04914 ATP-dependent helicas 100.0 8.2E-28 1.8E-32 227.9 26.8 294 55-353 152-577 (956)
84 PRK05580 primosome assembly pr 100.0 3.8E-27 8.2E-32 220.2 28.3 277 55-349 144-507 (679)
85 PRK11131 ATP-dependent RNA hel 100.0 5.6E-27 1.2E-31 225.4 27.0 272 56-349 75-364 (1294)
86 PRK09694 helicase Cas3; Provis 100.0 1.6E-26 3.4E-31 217.8 28.5 296 54-352 285-650 (878)
87 PF00270 DEAD: DEAD/DEAH box h 100.0 2.4E-27 5.3E-32 186.6 17.9 164 57-221 1-167 (169)
88 PRK11448 hsdR type I restricti 100.0 3.8E-26 8.3E-31 221.2 25.6 292 55-353 413-787 (1123)
89 KOG0951 RNA helicase BRR2, DEA 99.9 2.1E-26 4.5E-31 213.6 21.5 302 38-346 294-657 (1674)
90 TIGR00595 priA primosomal prot 99.9 4.4E-26 9.6E-31 205.8 22.7 260 74-349 1-339 (505)
91 PRK12904 preprotein translocas 99.9 1.1E-25 2.4E-30 208.0 25.4 277 51-340 78-496 (830)
92 PRK13104 secA preprotein trans 99.9 6.3E-26 1.4E-30 209.9 23.3 273 57-339 82-509 (896)
93 COG4098 comFA Superfamily II D 99.9 2.8E-25 6.2E-30 180.3 22.6 269 55-346 97-379 (441)
94 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2E-24 4.3E-29 208.7 28.3 276 57-351 69-359 (1283)
95 COG1110 Reverse gyrase [DNA re 99.9 6.7E-25 1.5E-29 200.9 23.5 288 44-351 71-417 (1187)
96 PLN03142 Probable chromatin-re 99.9 7.1E-24 1.5E-28 202.0 23.6 291 55-353 169-571 (1033)
97 PRK12906 secA preprotein trans 99.9 9.8E-24 2.1E-28 194.4 22.4 290 51-353 77-527 (796)
98 PRK12899 secA preprotein trans 99.9 4.6E-23 1E-27 190.8 24.9 148 36-188 65-228 (970)
99 PRK13107 preprotein translocas 99.9 4.8E-23 1E-27 190.4 20.6 273 55-339 82-514 (908)
100 KOG0947 Cytoplasmic exosomal R 99.9 9.8E-23 2.1E-27 185.1 21.1 281 50-349 293-682 (1248)
101 COG4581 Superfamily II RNA hel 99.9 2.8E-22 6E-27 188.0 23.7 289 45-347 110-494 (1041)
102 TIGR01407 dinG_rel DnaQ family 99.9 3.3E-21 7.2E-26 185.9 29.7 307 40-352 231-757 (850)
103 TIGR00348 hsdR type I site-spe 99.9 6.6E-22 1.4E-26 185.1 23.3 282 55-348 238-617 (667)
104 smart00487 DEXDc DEAD-like hel 99.9 2.6E-21 5.6E-26 156.6 20.6 187 50-237 3-191 (201)
105 COG1203 CRISPR-associated heli 99.9 2.1E-21 4.5E-26 183.6 20.0 290 55-346 195-517 (733)
106 KOG0385 Chromatin remodeling c 99.9 1.7E-20 3.6E-25 167.3 22.7 291 55-353 167-571 (971)
107 COG4096 HsdR Type I site-speci 99.9 6.2E-21 1.3E-25 172.4 20.2 275 55-348 165-507 (875)
108 KOG0948 Nuclear exosomal RNA h 99.9 1.9E-21 4.1E-26 172.7 15.4 277 55-345 129-495 (1041)
109 COG1643 HrpA HrpA-like helicas 99.9 7E-20 1.5E-24 170.8 25.1 282 55-351 50-342 (845)
110 COG1198 PriA Primosomal protei 99.9 2.9E-20 6.4E-25 170.8 21.3 280 55-350 198-562 (730)
111 KOG1123 RNA polymerase II tran 99.9 1.1E-20 2.3E-25 161.1 15.1 271 55-348 302-615 (776)
112 KOG0387 Transcription-coupled 99.8 2.6E-19 5.7E-24 160.4 21.3 291 55-353 205-630 (923)
113 KOG0922 DEAH-box RNA helicase 99.8 7E-19 1.5E-23 155.6 21.9 275 55-349 51-343 (674)
114 PRK07246 bifunctional ATP-depe 99.8 4.3E-18 9.4E-23 162.3 26.7 287 51-351 242-725 (820)
115 KOG0950 DNA polymerase theta/e 99.8 3.2E-19 7E-24 163.1 17.5 288 47-347 215-573 (1008)
116 COG0556 UvrB Helicase subunit 99.8 2.4E-18 5.1E-23 148.3 20.3 138 207-352 387-526 (663)
117 COG4889 Predicted helicase [Ge 99.8 9.3E-20 2E-24 164.7 9.8 317 29-353 136-559 (1518)
118 PRK12326 preprotein translocas 99.8 2.7E-17 5.8E-22 149.2 24.9 275 51-339 75-492 (764)
119 cd00046 DEXDc DEAD-like helica 99.8 3.6E-18 7.8E-23 130.2 16.4 144 71-216 1-144 (144)
120 PF04851 ResIII: Type III rest 99.8 1.1E-18 2.3E-23 139.4 12.8 152 55-217 3-183 (184)
121 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.2E-16 2.7E-21 146.0 27.2 89 261-352 460-562 (636)
122 KOG1000 Chromatin remodeling p 99.8 7.7E-17 1.7E-21 137.6 23.5 288 54-353 197-575 (689)
123 KOG0390 DNA repair protein, SN 99.8 9.2E-17 2E-21 147.2 25.4 293 55-353 238-679 (776)
124 KOG0920 ATP-dependent RNA heli 99.8 5.1E-17 1.1E-21 151.4 23.7 306 34-349 152-497 (924)
125 KOG0389 SNF2 family DNA-depend 99.8 7.3E-18 1.6E-22 151.1 16.7 293 55-354 399-861 (941)
126 PRK12900 secA preprotein trans 99.8 9.7E-18 2.1E-22 156.3 18.0 94 258-353 582-685 (1025)
127 PRK08074 bifunctional ATP-depe 99.8 2.7E-16 5.8E-21 152.8 27.5 81 271-351 751-835 (928)
128 PRK13103 secA preprotein trans 99.8 4.6E-17 1E-21 151.3 18.8 272 55-339 82-514 (913)
129 KOG0384 Chromodomain-helicase 99.8 1.2E-17 2.6E-22 156.2 14.5 290 54-353 369-783 (1373)
130 KOG0923 mRNA splicing factor A 99.7 4.3E-16 9.3E-21 137.5 22.0 281 52-351 262-561 (902)
131 KOG0392 SNF2 family DNA-depend 99.7 1.4E-16 3E-21 148.9 19.2 292 55-354 975-1427(1549)
132 CHL00122 secA preprotein trans 99.7 2.6E-16 5.7E-21 145.6 20.2 276 51-339 73-491 (870)
133 TIGR00631 uvrb excinuclease AB 99.7 6.8E-15 1.5E-19 136.7 27.4 94 259-352 427-527 (655)
134 PRK12902 secA preprotein trans 99.7 1.4E-15 3E-20 140.8 21.4 273 55-339 85-506 (939)
135 KOG0925 mRNA splicing factor A 99.7 6E-16 1.3E-20 132.0 16.1 298 28-350 20-341 (699)
136 PRK12903 secA preprotein trans 99.7 3.1E-15 6.8E-20 138.0 21.5 288 51-352 75-512 (925)
137 KOG0926 DEAH-box RNA helicase 99.7 2.7E-15 5.9E-20 135.0 20.1 281 58-349 259-657 (1172)
138 KOG0949 Predicted helicase, DE 99.7 2E-15 4.4E-20 138.5 18.1 159 55-218 511-673 (1330)
139 KOG0924 mRNA splicing factor A 99.7 9.4E-15 2E-19 129.5 20.7 277 52-349 353-650 (1042)
140 PRK11747 dinG ATP-dependent DN 99.7 9.6E-14 2.1E-18 131.0 26.7 84 263-352 527-617 (697)
141 TIGR00604 rad3 DNA repair heli 99.7 5.7E-14 1.2E-18 133.6 24.8 75 51-125 6-84 (705)
142 COG1199 DinG Rad3-related DNA 99.6 2.8E-14 6.1E-19 135.5 21.5 87 261-351 469-559 (654)
143 KOG4439 RNA polymerase II tran 99.6 2.8E-14 6E-19 127.0 16.1 84 270-353 744-830 (901)
144 KOG0388 SNF2 family DNA-depend 99.6 2.5E-13 5.3E-18 121.2 17.9 83 271-353 1043-1126(1185)
145 KOG0953 Mitochondrial RNA heli 99.5 6.6E-14 1.4E-18 121.6 12.4 241 70-350 191-436 (700)
146 KOG1002 Nucleotide excision re 99.5 1.5E-12 3.3E-17 111.8 19.6 81 273-353 639-721 (791)
147 KOG0386 Chromatin remodeling c 99.5 5.3E-14 1.2E-18 129.7 10.3 292 55-353 394-810 (1157)
148 KOG4150 Predicted ATP-dependen 99.5 1.8E-13 3.8E-18 119.4 12.9 300 50-353 281-614 (1034)
149 KOG0391 SNF2 family DNA-depend 99.5 1.1E-12 2.4E-17 122.7 18.7 95 259-353 1261-1359(1958)
150 cd00079 HELICc Helicase superf 99.5 3.8E-13 8.2E-18 100.8 12.6 96 258-353 12-109 (131)
151 PF07652 Flavi_DEAD: Flaviviru 99.5 1.1E-13 2.4E-18 100.7 8.5 136 69-220 3-140 (148)
152 PF06862 DUF1253: Protein of u 99.5 1.4E-11 3E-16 107.7 22.8 258 96-353 32-383 (442)
153 PF02399 Herpes_ori_bp: Origin 99.5 3.4E-12 7.3E-17 117.5 19.7 251 71-341 50-345 (824)
154 PF00176 SNF2_N: SNF2 family N 99.5 1.2E-13 2.5E-18 119.1 9.2 155 59-217 1-173 (299)
155 COG0610 Type I site-specific r 99.5 7.3E-12 1.6E-16 121.6 20.9 140 71-219 274-416 (962)
156 PRK14873 primosome assembly pr 99.5 1E-11 2.2E-16 115.6 20.5 139 74-225 164-312 (665)
157 PF00271 Helicase_C: Helicase 99.4 3.4E-13 7.4E-18 91.0 6.4 64 290-353 1-64 (78)
158 PRK05298 excinuclease ABC subu 99.4 7.6E-12 1.6E-16 117.4 14.3 91 259-349 431-523 (652)
159 smart00489 DEXDc3 DEAD-like he 99.4 9.7E-12 2.1E-16 105.2 11.8 73 51-124 5-84 (289)
160 smart00488 DEXDc2 DEAD-like he 99.4 9.7E-12 2.1E-16 105.2 11.8 73 51-124 5-84 (289)
161 TIGR02562 cas3_yersinia CRISPR 99.3 1.6E-10 3.4E-15 109.6 19.4 181 41-223 394-641 (1110)
162 PRK12901 secA preprotein trans 99.3 7.8E-11 1.7E-15 111.1 17.3 128 56-188 168-303 (1112)
163 KOG0951 RNA helicase BRR2, DEA 99.3 3.8E-11 8.2E-16 113.7 15.0 267 55-339 1143-1447(1674)
164 KOG1015 Transcription regulato 99.3 7.9E-11 1.7E-15 108.6 15.0 94 260-353 1128-1249(1567)
165 COG0553 HepA Superfamily II DN 99.2 3.8E-10 8.2E-15 111.6 17.6 295 54-353 337-794 (866)
166 smart00490 HELICc helicase sup 99.2 6.6E-11 1.4E-15 80.6 7.3 67 287-353 2-68 (82)
167 COG0653 SecA Preprotein transl 99.2 1E-09 2.2E-14 102.1 16.0 274 56-339 79-494 (822)
168 PF07517 SecA_DEAD: SecA DEAD- 99.2 8.8E-10 1.9E-14 90.8 13.6 130 51-188 74-210 (266)
169 KOG2340 Uncharacterized conser 99.1 1.9E-09 4.1E-14 93.8 13.0 300 53-353 214-635 (698)
170 PF13086 AAA_11: AAA domain; P 98.9 2.3E-08 4.9E-13 82.9 13.6 69 55-123 1-75 (236)
171 PF02562 PhoH: PhoH-like prote 98.8 3.4E-08 7.5E-13 78.1 9.3 147 53-215 2-155 (205)
172 PRK15483 type III restriction- 98.8 9E-08 1.9E-12 91.4 12.4 143 71-218 60-240 (986)
173 KOG1802 RNA helicase nonsense 98.8 4.4E-08 9.4E-13 87.9 9.4 85 47-137 402-486 (935)
174 PF13604 AAA_30: AAA domain; P 98.7 7.7E-08 1.7E-12 76.9 9.5 123 55-215 1-130 (196)
175 KOG1133 Helicase of the DEAD s 98.7 1.4E-05 3.1E-10 72.6 24.0 80 268-351 626-720 (821)
176 PF13872 AAA_34: P-loop contai 98.6 5.5E-07 1.2E-11 74.7 11.9 157 55-219 37-223 (303)
177 PRK10536 hypothetical protein; 98.5 4.7E-07 1E-11 73.8 7.9 145 50-212 54-209 (262)
178 TIGR01448 recD_rel helicase, p 98.5 1.5E-06 3.3E-11 82.9 12.6 128 51-215 320-452 (720)
179 PF13245 AAA_19: Part of AAA d 98.5 6.4E-07 1.4E-11 59.1 6.4 52 70-121 10-62 (76)
180 KOG0921 Dosage compensation co 98.5 1.2E-06 2.6E-11 81.4 10.3 282 59-348 382-726 (1282)
181 PF09848 DUF2075: Uncharacteri 98.4 1.5E-06 3.2E-11 76.4 9.8 108 72-202 3-117 (352)
182 KOG0952 DNA/RNA helicase MER3/ 98.4 1.6E-07 3.5E-12 88.4 3.6 131 56-190 928-1061(1230)
183 PRK10875 recD exonuclease V su 98.4 5.3E-06 1.2E-10 77.2 13.3 141 57-215 154-301 (615)
184 TIGR00376 DNA helicase, putati 98.4 3E-06 6.4E-11 79.8 11.6 68 54-124 156-224 (637)
185 PF12340 DUF3638: Protein of u 98.4 5.9E-06 1.3E-10 66.1 11.4 128 33-165 3-144 (229)
186 KOG1803 DNA helicase [Replicat 98.4 2.3E-06 5.1E-11 76.5 9.4 65 55-122 185-250 (649)
187 TIGR01447 recD exodeoxyribonuc 98.4 5.2E-06 1.1E-10 77.1 12.1 141 57-215 147-295 (586)
188 KOG1132 Helicase of the DEAD s 98.3 3.5E-06 7.5E-11 78.5 10.0 72 55-126 21-135 (945)
189 KOG1016 Predicted DNA helicase 98.3 8.6E-05 1.9E-09 68.6 18.1 81 273-353 720-821 (1387)
190 PF13307 Helicase_C_2: Helicas 98.2 2.1E-06 4.6E-11 66.7 5.8 84 265-351 3-92 (167)
191 KOG0989 Replication factor C, 98.2 4.8E-06 1E-10 68.6 7.0 60 170-230 124-186 (346)
192 COG3587 Restriction endonuclea 98.1 1.3E-05 2.8E-10 74.5 8.7 145 71-220 75-246 (985)
193 PF00580 UvrD-helicase: UvrD/R 98.1 8.8E-06 1.9E-10 70.6 7.2 68 56-125 1-69 (315)
194 COG1419 FlhF Flagellar GTP-bin 98.1 9.9E-05 2.1E-09 64.0 12.9 135 70-231 203-339 (407)
195 TIGR02768 TraA_Ti Ti-type conj 98.1 8.4E-05 1.8E-09 71.5 13.6 121 55-213 352-474 (744)
196 PRK13889 conjugal transfer rel 98.0 7.1E-05 1.5E-09 73.2 12.7 126 51-215 343-470 (988)
197 COG1875 NYN ribonuclease and A 98.0 3.6E-05 7.9E-10 65.1 9.2 145 50-213 223-385 (436)
198 KOG1805 DNA replication helica 98.0 3E-05 6.6E-10 73.2 9.1 138 37-189 655-810 (1100)
199 PRK13826 Dtr system oriT relax 97.9 0.0002 4.4E-09 70.6 13.7 138 39-215 366-505 (1102)
200 KOG1131 RNA polymerase II tran 97.9 0.00011 2.4E-09 64.9 9.7 74 51-124 12-90 (755)
201 PF13401 AAA_22: AAA domain; P 97.9 4.3E-05 9.4E-10 56.9 6.2 25 69-93 3-27 (131)
202 PRK08181 transposase; Validate 97.8 0.00046 1E-08 57.8 12.3 117 57-218 89-210 (269)
203 PRK04296 thymidine kinase; Pro 97.8 3E-05 6.5E-10 61.7 5.0 36 71-109 3-38 (190)
204 KOG1001 Helicase-like transcri 97.8 0.00015 3.3E-09 68.1 9.9 137 71-219 153-295 (674)
205 PRK06526 transposase; Provisio 97.8 0.00015 3.4E-09 60.2 8.6 110 66-219 94-204 (254)
206 PRK12723 flagellar biosynthesi 97.8 0.00082 1.8E-08 59.2 13.3 129 71-227 175-309 (388)
207 PF00448 SRP54: SRP54-type pro 97.7 0.00012 2.6E-09 58.3 7.4 133 72-227 3-136 (196)
208 cd00009 AAA The AAA+ (ATPases 97.7 0.0007 1.5E-08 51.2 10.6 21 70-90 19-39 (151)
209 PRK11054 helD DNA helicase IV; 97.6 0.00027 5.9E-09 67.1 9.0 85 50-136 191-276 (684)
210 smart00382 AAA ATPases associa 97.6 0.00024 5.2E-09 53.4 7.2 42 70-114 2-43 (148)
211 PRK14974 cell division protein 97.6 0.0012 2.7E-08 57.0 11.4 131 71-228 141-276 (336)
212 PRK10919 ATP-dependent DNA hel 97.5 0.00019 4.1E-09 68.5 6.6 69 55-125 2-71 (672)
213 TIGR02760 TraI_TIGR conjugativ 97.4 0.015 3.3E-07 62.0 19.3 209 55-294 429-648 (1960)
214 PHA02533 17 large terminase pr 97.4 0.0017 3.6E-08 60.0 10.6 123 55-189 59-183 (534)
215 PRK11889 flhF flagellar biosyn 97.4 0.0037 8.1E-08 54.7 11.9 129 71-228 242-375 (436)
216 COG3421 Uncharacterized protei 97.4 0.00044 9.5E-09 62.3 6.4 141 75-218 2-167 (812)
217 PRK07952 DNA replication prote 97.4 0.0021 4.6E-08 53.0 10.1 34 71-107 100-133 (244)
218 KOG0383 Predicted helicase [Ge 97.3 3.5E-05 7.5E-10 71.6 -0.8 63 272-335 631-696 (696)
219 PRK00149 dnaA chromosomal repl 97.3 0.0017 3.7E-08 59.3 10.1 105 71-218 149-255 (450)
220 PRK14722 flhF flagellar biosyn 97.3 0.0022 4.8E-08 56.1 10.3 168 33-227 81-269 (374)
221 KOG0298 DEAD box-containing he 97.3 0.00096 2.1E-08 65.2 8.4 148 70-222 374-556 (1394)
222 PRK05642 DNA replication initi 97.3 0.0017 3.7E-08 53.6 8.9 44 175-218 97-141 (234)
223 TIGR01075 uvrD DNA helicase II 97.3 0.0005 1.1E-08 66.5 6.5 70 54-125 3-73 (715)
224 PRK06835 DNA replication prote 97.3 0.0075 1.6E-07 52.2 13.0 45 70-118 183-227 (329)
225 PRK06893 DNA replication initi 97.3 0.0012 2.7E-08 54.2 7.9 45 175-219 91-137 (229)
226 PRK14956 DNA polymerase III su 97.3 0.0029 6.2E-08 57.0 10.6 22 73-94 43-64 (484)
227 cd01124 KaiC KaiC is a circadi 97.3 0.0038 8.3E-08 49.5 10.4 49 73-125 2-50 (187)
228 PRK11773 uvrD DNA-dependent he 97.3 0.00056 1.2E-08 66.2 6.5 70 54-125 8-78 (721)
229 COG2256 MGS1 ATPase related to 97.3 0.00057 1.2E-08 58.9 5.6 36 176-216 105-140 (436)
230 PRK08727 hypothetical protein; 97.3 0.0017 3.7E-08 53.5 8.4 35 71-108 42-76 (233)
231 PRK06921 hypothetical protein; 97.3 0.0084 1.8E-07 50.4 12.5 44 70-116 117-160 (266)
232 TIGR00362 DnaA chromosomal rep 97.2 0.002 4.3E-08 58.1 9.3 37 71-108 137-173 (405)
233 TIGR01074 rep ATP-dependent DN 97.2 0.00077 1.7E-08 64.9 7.1 68 56-125 2-70 (664)
234 PRK14087 dnaA chromosomal repl 97.2 0.0019 4.2E-08 58.5 8.9 108 71-218 142-250 (450)
235 cd01120 RecA-like_NTPases RecA 97.2 0.0055 1.2E-07 47.3 10.3 39 73-114 2-40 (165)
236 PRK08084 DNA replication initi 97.2 0.0027 5.9E-08 52.4 8.8 43 176-218 98-142 (235)
237 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.0033 7.2E-08 51.6 9.3 25 69-93 37-61 (226)
238 PRK12377 putative replication 97.2 0.0049 1.1E-07 51.0 10.1 45 71-119 102-146 (248)
239 PF00308 Bac_DnaA: Bacterial d 97.2 0.0018 3.9E-08 52.7 7.4 107 71-219 35-143 (219)
240 smart00492 HELICc3 helicase su 97.2 0.0019 4.2E-08 48.4 7.0 68 284-351 3-79 (141)
241 TIGR02785 addA_Gpos recombinat 97.1 0.0018 3.8E-08 66.3 8.8 122 56-186 2-126 (1232)
242 PF05127 Helicase_RecD: Helica 97.1 0.0012 2.7E-08 51.1 6.0 123 74-216 1-123 (177)
243 PRK05703 flhF flagellar biosyn 97.1 0.0073 1.6E-07 54.3 11.7 128 70-227 221-354 (424)
244 COG1484 DnaC DNA replication p 97.1 0.0026 5.7E-08 53.0 8.2 49 69-121 104-152 (254)
245 TIGR01547 phage_term_2 phage t 97.1 0.0023 5E-08 57.5 8.5 144 72-227 3-151 (396)
246 PF13173 AAA_14: AAA domain 97.1 0.0091 2E-07 44.1 10.2 41 175-219 61-101 (128)
247 PRK14712 conjugal transfer nic 97.1 0.0032 7E-08 64.6 10.0 63 55-118 835-901 (1623)
248 PRK14721 flhF flagellar biosyn 97.1 0.0059 1.3E-07 54.4 10.6 132 70-228 191-324 (420)
249 smart00491 HELICc2 helicase su 97.1 0.0016 3.5E-08 48.9 6.1 68 284-351 3-80 (142)
250 PLN03025 replication factor C 97.1 0.0063 1.4E-07 52.9 10.7 40 175-216 99-138 (319)
251 PRK13709 conjugal transfer nic 97.0 0.0056 1.2E-07 63.7 11.1 63 55-118 967-1033(1747)
252 PF00004 AAA: ATPase family as 97.0 0.0058 1.2E-07 45.3 8.6 16 176-191 59-74 (132)
253 PHA03368 DNA packaging termina 97.0 0.0055 1.2E-07 56.8 9.7 132 70-215 254-389 (738)
254 PHA03333 putative ATPase subun 97.0 0.019 4E-07 53.7 12.7 68 57-126 171-241 (752)
255 CHL00181 cbbX CbbX; Provisiona 97.0 0.0053 1.1E-07 52.2 8.8 21 70-90 59-79 (287)
256 PF03354 Terminase_1: Phage Te 97.0 0.0051 1.1E-07 56.6 9.3 148 58-213 1-160 (477)
257 TIGR02881 spore_V_K stage V sp 96.9 0.004 8.7E-08 52.4 7.8 20 71-90 43-62 (261)
258 PF13177 DNA_pol3_delta2: DNA 96.9 0.0032 7E-08 48.6 6.5 42 174-216 101-142 (162)
259 PRK00411 cdc6 cell division co 96.9 0.0054 1.2E-07 55.1 8.9 36 71-107 56-91 (394)
260 PRK14088 dnaA chromosomal repl 96.9 0.0096 2.1E-07 54.0 10.4 38 71-109 131-168 (440)
261 PRK05707 DNA polymerase III su 96.9 0.0099 2.2E-07 51.5 10.0 41 55-95 3-47 (328)
262 TIGR01073 pcrA ATP-dependent D 96.9 0.0022 4.7E-08 62.3 6.6 70 54-125 3-73 (726)
263 PRK11331 5-methylcytosine-spec 96.9 0.0062 1.3E-07 54.4 8.6 34 56-89 180-213 (459)
264 PRK08116 hypothetical protein; 96.9 0.023 5E-07 47.8 11.8 45 71-119 115-159 (268)
265 KOG0991 Replication factor C, 96.9 0.0026 5.6E-08 50.8 5.5 25 71-95 49-73 (333)
266 PRK07003 DNA polymerase III su 96.9 0.011 2.4E-07 56.1 10.4 40 174-215 118-157 (830)
267 PRK09183 transposase/IS protei 96.8 0.0088 1.9E-07 50.1 9.0 46 67-116 99-144 (259)
268 PRK10917 ATP-dependent DNA hel 96.8 0.0081 1.8E-07 57.8 9.9 76 271-346 309-389 (681)
269 PRK14964 DNA polymerase III su 96.8 0.012 2.6E-07 53.6 10.4 22 71-92 36-57 (491)
270 PRK14086 dnaA chromosomal repl 96.8 0.0075 1.6E-07 56.1 9.0 104 71-217 315-420 (617)
271 PRK08533 flagellar accessory p 96.8 0.022 4.8E-07 46.8 10.9 55 67-125 21-75 (230)
272 PRK07764 DNA polymerase III su 96.8 0.015 3.3E-07 56.6 11.3 39 174-213 119-157 (824)
273 PRK14949 DNA polymerase III su 96.8 0.0093 2E-07 57.7 9.6 21 73-93 41-61 (944)
274 PRK12422 chromosomal replicati 96.8 0.012 2.6E-07 53.3 9.9 46 175-220 202-249 (445)
275 PF14617 CMS1: U3-containing 9 96.8 0.0042 9.1E-08 51.1 6.3 86 100-186 125-212 (252)
276 PF05496 RuvB_N: Holliday junc 96.8 0.0011 2.4E-08 53.1 2.8 18 71-88 51-68 (233)
277 PRK08903 DnaA regulatory inact 96.8 0.011 2.5E-07 48.5 9.0 42 175-217 90-132 (227)
278 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.013 2.9E-07 48.5 9.4 53 69-125 20-72 (237)
279 PRK12323 DNA polymerase III su 96.7 0.017 3.7E-07 54.0 10.6 24 72-95 40-63 (700)
280 PRK12402 replication factor C 96.7 0.021 4.5E-07 50.1 10.8 40 174-215 124-163 (337)
281 PRK14958 DNA polymerase III su 96.7 0.011 2.5E-07 54.4 9.3 39 174-213 118-156 (509)
282 PRK14960 DNA polymerase III su 96.7 0.015 3.3E-07 54.4 9.9 40 174-215 117-156 (702)
283 COG0470 HolB ATPase involved i 96.7 0.017 3.7E-07 50.4 10.0 40 174-215 108-147 (325)
284 PRK06995 flhF flagellar biosyn 96.7 0.027 5.9E-07 51.2 11.3 26 70-95 256-281 (484)
285 PRK14962 DNA polymerase III su 96.7 0.029 6.2E-07 51.3 11.5 20 73-92 39-58 (472)
286 PRK06731 flhF flagellar biosyn 96.7 0.043 9.3E-07 46.1 11.7 129 71-228 76-209 (270)
287 COG4626 Phage terminase-like p 96.6 0.018 3.8E-07 52.3 9.8 149 55-215 61-224 (546)
288 TIGR02880 cbbX_cfxQ probable R 96.6 0.013 2.7E-07 49.9 8.5 19 70-88 58-76 (284)
289 PRK08769 DNA polymerase III su 96.6 0.024 5.3E-07 48.8 10.1 42 54-95 3-51 (319)
290 PRK00771 signal recognition pa 96.6 0.014 3.1E-07 52.4 9.0 52 177-228 177-229 (437)
291 TIGR00643 recG ATP-dependent D 96.6 0.015 3.2E-07 55.5 9.5 76 271-346 283-363 (630)
292 PF06745 KaiC: KaiC; InterPro 96.6 0.0098 2.1E-07 48.9 7.4 53 69-125 18-71 (226)
293 KOG0738 AAA+-type ATPase [Post 96.6 0.0082 1.8E-07 51.7 6.8 41 71-118 246-286 (491)
294 COG1222 RPT1 ATP-dependent 26S 96.6 0.039 8.4E-07 47.3 10.7 73 32-115 147-223 (406)
295 KOG2028 ATPase related to the 96.6 0.0045 9.7E-08 52.9 5.1 41 174-219 221-261 (554)
296 COG1435 Tdk Thymidine kinase [ 96.5 0.047 1E-06 42.7 10.2 105 70-202 4-108 (201)
297 PTZ00112 origin recognition co 96.5 0.035 7.6E-07 53.6 11.3 26 175-201 869-894 (1164)
298 TIGR02760 TraI_TIGR conjugativ 96.5 0.015 3.3E-07 62.1 10.0 62 55-118 1019-1085(1960)
299 PHA02544 44 clamp loader, smal 96.5 0.0095 2.1E-07 51.7 7.1 40 175-215 100-139 (316)
300 PRK13833 conjugal transfer pro 96.5 0.01 2.2E-07 51.1 7.0 64 47-113 122-186 (323)
301 KOG1513 Nuclear helicase MOP-3 96.5 0.0077 1.7E-07 56.5 6.5 156 55-216 264-454 (1300)
302 COG3973 Superfamily I DNA and 96.5 0.0078 1.7E-07 54.8 6.4 89 37-126 186-285 (747)
303 PRK14723 flhF flagellar biosyn 96.5 0.016 3.4E-07 55.4 8.7 130 70-227 185-317 (767)
304 PRK05580 primosome assembly pr 96.4 0.031 6.8E-07 53.7 10.8 76 272-348 190-266 (679)
305 cd01122 GP4d_helicase GP4d_hel 96.4 0.019 4.2E-07 48.6 8.6 45 63-109 23-67 (271)
306 TIGR00596 rad1 DNA repair prot 96.4 0.011 2.4E-07 57.3 7.6 68 151-218 7-74 (814)
307 cd03115 SRP The signal recogni 96.4 0.12 2.7E-06 40.3 12.5 53 175-227 82-135 (173)
308 PRK13342 recombination factor 96.4 0.012 2.6E-07 53.1 7.5 19 71-89 37-55 (413)
309 PTZ00293 thymidine kinase; Pro 96.4 0.027 5.9E-07 45.0 8.5 39 70-111 4-42 (211)
310 COG2805 PilT Tfp pilus assembl 96.4 0.036 7.7E-07 46.4 9.2 52 29-99 102-153 (353)
311 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.033 7.1E-07 42.5 8.5 134 72-225 4-147 (159)
312 PF05621 TniB: Bacterial TniB 96.4 0.02 4.4E-07 48.2 8.0 116 71-212 62-186 (302)
313 PRK12727 flagellar biosynthesi 96.4 0.033 7.1E-07 50.9 9.8 26 69-94 349-374 (559)
314 PRK14951 DNA polymerase III su 96.4 0.038 8.2E-07 52.0 10.5 22 73-94 41-62 (618)
315 PRK05298 excinuclease ABC subu 96.3 0.012 2.6E-07 56.2 7.4 67 55-127 12-83 (652)
316 PRK14961 DNA polymerase III su 96.3 0.025 5.4E-07 50.1 8.8 20 73-92 41-60 (363)
317 PRK07994 DNA polymerase III su 96.3 0.034 7.3E-07 52.5 9.9 21 73-93 41-61 (647)
318 PRK13894 conjugal transfer ATP 96.3 0.013 2.8E-07 50.5 6.7 66 45-113 124-190 (319)
319 TIGR02782 TrbB_P P-type conjug 96.3 0.021 4.5E-07 48.9 7.9 66 45-113 108-174 (299)
320 TIGR00580 mfd transcription-re 96.3 0.027 5.8E-07 55.8 9.5 75 272-346 500-579 (926)
321 PRK09111 DNA polymerase III su 96.3 0.054 1.2E-06 51.0 11.1 39 174-213 131-169 (598)
322 TIGR02928 orc1/cdc6 family rep 96.3 0.026 5.7E-07 50.1 8.8 18 71-88 41-58 (365)
323 TIGR00595 priA primosomal prot 96.3 0.042 9.2E-07 50.8 10.3 77 272-349 25-102 (505)
324 PRK06645 DNA polymerase III su 96.3 0.056 1.2E-06 49.7 10.9 24 71-94 44-67 (507)
325 TIGR00064 ftsY signal recognit 96.3 0.061 1.3E-06 45.4 10.4 132 71-228 73-214 (272)
326 PRK05973 replicative DNA helic 96.2 0.016 3.5E-07 47.5 6.7 85 36-125 21-115 (237)
327 COG1200 RecG RecG-like helicas 96.2 0.035 7.6E-07 51.6 9.4 85 262-346 300-390 (677)
328 PF05876 Terminase_GpA: Phage 96.2 0.025 5.5E-07 52.9 8.7 156 55-219 16-182 (557)
329 PRK08939 primosomal protein Dn 96.2 0.052 1.1E-06 46.6 10.0 26 70-95 156-181 (306)
330 PRK14952 DNA polymerase III su 96.2 0.063 1.4E-06 50.3 11.1 39 174-213 117-155 (584)
331 PRK04195 replication factor C 96.2 0.021 4.6E-07 52.7 8.0 21 70-90 39-59 (482)
332 KOG0739 AAA+-type ATPase [Post 96.2 0.078 1.7E-06 44.3 10.2 106 71-222 167-283 (439)
333 PRK14873 primosome assembly pr 96.2 0.045 9.9E-07 52.1 10.2 93 258-351 172-268 (665)
334 PRK12724 flagellar biosynthesi 96.2 0.088 1.9E-06 46.9 11.2 125 72-227 225-356 (432)
335 PRK12726 flagellar biosynthesi 96.2 0.091 2E-06 46.1 11.1 128 70-226 206-338 (407)
336 COG2909 MalT ATP-dependent tra 96.2 0.079 1.7E-06 50.6 11.4 42 176-217 130-171 (894)
337 PRK11823 DNA repair protein Ra 96.1 0.038 8.3E-07 50.2 9.2 52 70-125 80-131 (446)
338 PRK00440 rfc replication facto 96.1 0.1 2.2E-06 45.4 11.6 38 175-213 102-139 (319)
339 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.057 1.2E-06 44.4 9.5 54 68-125 18-71 (229)
340 PRK13341 recombination factor 96.1 0.021 4.4E-07 54.9 7.6 40 175-219 109-148 (725)
341 PRK14963 DNA polymerase III su 96.1 0.061 1.3E-06 49.6 10.4 21 73-93 39-59 (504)
342 TIGR03499 FlhF flagellar biosy 96.1 0.014 3.1E-07 49.6 5.9 26 71-96 195-220 (282)
343 PF01695 IstB_IS21: IstB-like 96.1 0.0085 1.8E-07 47.0 4.2 46 67-116 44-89 (178)
344 TIGR00678 holB DNA polymerase 96.1 0.088 1.9E-06 41.8 10.2 25 71-95 15-39 (188)
345 PRK08699 DNA polymerase III su 96.1 0.071 1.5E-06 46.2 10.1 39 57-95 3-46 (325)
346 COG0593 DnaA ATPase involved i 96.0 0.038 8.3E-07 48.9 8.4 45 175-219 175-221 (408)
347 PF05729 NACHT: NACHT domain 96.0 0.057 1.2E-06 41.6 8.8 26 72-97 2-27 (166)
348 PRK08451 DNA polymerase III su 96.0 0.044 9.5E-07 50.6 9.1 39 174-213 116-154 (535)
349 PRK14969 DNA polymerase III su 96.0 0.049 1.1E-06 50.6 9.5 39 174-213 118-156 (527)
350 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.073 1.6E-06 44.7 9.7 38 69-109 35-72 (259)
351 PRK08691 DNA polymerase III su 96.0 0.063 1.4E-06 50.8 10.1 39 174-213 118-156 (709)
352 PRK14965 DNA polymerase III su 96.0 0.078 1.7E-06 50.0 10.8 39 174-213 118-156 (576)
353 TIGR01425 SRP54_euk signal rec 96.0 0.16 3.5E-06 45.6 12.1 131 72-227 102-235 (429)
354 PRK14957 DNA polymerase III su 96.0 0.066 1.4E-06 49.7 10.0 39 174-213 118-156 (546)
355 PRK05986 cob(I)alamin adenolsy 96.0 0.036 7.8E-07 43.6 7.1 146 68-225 20-167 (191)
356 cd01121 Sms Sms (bacterial rad 96.0 0.075 1.6E-06 47.0 9.9 52 70-125 82-133 (372)
357 PRK10867 signal recognition pa 96.0 0.062 1.3E-06 48.4 9.5 26 72-97 102-127 (433)
358 PF01443 Viral_helicase1: Vira 96.0 0.011 2.4E-07 48.8 4.6 17 73-89 1-17 (234)
359 PRK14959 DNA polymerase III su 95.9 0.13 2.7E-06 48.4 11.6 23 72-94 40-62 (624)
360 COG1474 CDC6 Cdc6-related prot 95.9 0.16 3.5E-06 44.8 11.7 29 174-203 122-150 (366)
361 PRK06964 DNA polymerase III su 95.9 0.16 3.5E-06 44.3 11.5 39 57-95 3-46 (342)
362 PF02572 CobA_CobO_BtuR: ATP:c 95.9 0.19 4.1E-06 39.0 10.6 142 72-225 5-148 (172)
363 PRK05896 DNA polymerase III su 95.9 0.051 1.1E-06 50.7 8.8 23 72-94 40-62 (605)
364 PRK04328 hypothetical protein; 95.9 0.11 2.4E-06 43.3 10.1 53 69-125 22-74 (249)
365 PF03237 Terminase_6: Terminas 95.9 0.18 3.9E-06 44.8 12.3 143 74-229 1-152 (384)
366 PRK10689 transcription-repair 95.8 0.058 1.3E-06 54.8 9.8 76 271-346 648-728 (1147)
367 PRK06067 flagellar accessory p 95.8 0.11 2.4E-06 42.9 10.0 52 70-125 25-76 (234)
368 PRK07471 DNA polymerase III su 95.8 0.042 9.1E-07 48.5 7.7 25 72-96 43-67 (365)
369 KOG0737 AAA+-type ATPase [Post 95.8 0.022 4.8E-07 48.8 5.7 59 28-86 84-143 (386)
370 PRK14955 DNA polymerase III su 95.8 0.13 2.8E-06 46.2 11.0 23 72-94 40-62 (397)
371 cd00984 DnaB_C DnaB helicase C 95.8 0.068 1.5E-06 44.4 8.7 41 67-109 10-50 (242)
372 COG1110 Reverse gyrase [DNA re 95.8 0.035 7.6E-07 53.9 7.4 77 259-335 112-195 (1187)
373 PRK09112 DNA polymerase III su 95.8 0.11 2.4E-06 45.6 10.1 41 174-215 140-180 (351)
374 TIGR03689 pup_AAA proteasome A 95.8 0.065 1.4E-06 49.2 8.9 18 70-87 216-233 (512)
375 TIGR03015 pepcterm_ATPase puta 95.8 0.12 2.7E-06 43.6 10.3 34 56-89 24-62 (269)
376 COG1444 Predicted P-loop ATPas 95.7 0.15 3.2E-06 48.7 11.2 149 46-216 205-356 (758)
377 KOG0733 Nuclear AAA ATPase (VC 95.7 0.11 2.3E-06 47.9 9.7 141 32-220 507-659 (802)
378 COG2804 PulE Type II secretory 95.6 0.026 5.5E-07 50.8 5.7 41 57-98 243-285 (500)
379 TIGR02868 CydC thiol reductant 95.6 0.021 4.6E-07 53.5 5.6 39 174-212 487-525 (529)
380 PRK11034 clpA ATP-dependent Cl 95.6 0.15 3.1E-06 49.6 11.1 19 70-88 207-225 (758)
381 TIGR00708 cobA cob(I)alamin ad 95.6 0.14 3E-06 39.7 9.0 142 71-225 6-149 (173)
382 PRK06620 hypothetical protein; 95.6 0.038 8.2E-07 44.9 6.2 18 71-88 45-62 (214)
383 TIGR02525 plasmid_TraJ plasmid 95.6 0.033 7.2E-07 49.1 6.3 40 69-109 148-187 (372)
384 COG0552 FtsY Signal recognitio 95.6 0.22 4.8E-06 42.5 10.8 132 72-227 141-280 (340)
385 KOG0744 AAA+-type ATPase [Post 95.6 0.038 8.3E-07 46.6 6.2 51 70-121 177-230 (423)
386 TIGR01241 FtsH_fam ATP-depende 95.6 0.043 9.3E-07 50.9 7.3 58 27-87 46-105 (495)
387 PRK05563 DNA polymerase III su 95.6 0.09 1.9E-06 49.3 9.4 22 72-93 40-61 (559)
388 COG4962 CpaF Flp pilus assembl 95.6 0.045 9.7E-07 46.8 6.7 62 51-116 153-215 (355)
389 PRK14950 DNA polymerase III su 95.6 0.13 2.8E-06 48.7 10.4 21 72-92 40-60 (585)
390 TIGR02639 ClpA ATP-dependent C 95.6 0.25 5.5E-06 48.2 12.7 19 70-88 203-221 (731)
391 PRK07993 DNA polymerase III su 95.5 0.1 2.2E-06 45.5 8.9 40 56-95 3-49 (334)
392 TIGR00959 ffh signal recogniti 95.4 0.12 2.6E-06 46.5 9.3 23 72-94 101-123 (428)
393 PHA03372 DNA packaging termina 95.4 0.096 2.1E-06 48.4 8.6 126 71-215 203-336 (668)
394 PRK04841 transcriptional regul 95.4 0.19 4.2E-06 50.6 11.9 43 175-217 121-163 (903)
395 KOG0741 AAA+-type ATPase [Post 95.4 0.23 5E-06 45.1 10.7 52 32-85 215-271 (744)
396 PRK06871 DNA polymerase III su 95.4 0.17 3.6E-06 43.8 9.8 40 56-95 3-49 (325)
397 PRK07940 DNA polymerase III su 95.4 0.27 5.8E-06 43.9 11.3 47 174-222 116-162 (394)
398 TIGR02012 tigrfam_recA protein 95.4 0.032 6.9E-07 48.0 5.3 45 69-116 54-98 (321)
399 PF05970 PIF1: PIF1-like helic 95.4 0.04 8.6E-07 48.8 6.1 59 55-116 1-65 (364)
400 PRK14948 DNA polymerase III su 95.4 0.12 2.7E-06 48.9 9.6 24 71-94 39-62 (620)
401 PRK13851 type IV secretion sys 95.3 0.037 8.1E-07 48.2 5.7 44 67-114 159-202 (344)
402 KOG2228 Origin recognition com 95.3 0.43 9.3E-06 40.9 11.5 56 161-216 123-181 (408)
403 COG0513 SrmB Superfamily II DN 95.3 0.11 2.4E-06 48.3 9.0 68 275-346 102-180 (513)
404 COG3972 Superfamily I DNA and 95.3 0.19 4.2E-06 45.1 9.8 69 55-125 162-230 (660)
405 PRK14954 DNA polymerase III su 95.3 0.11 2.5E-06 49.0 9.1 23 72-94 40-62 (620)
406 PRK06090 DNA polymerase III su 95.3 0.18 3.9E-06 43.5 9.5 41 55-95 3-50 (319)
407 PRK09376 rho transcription ter 95.3 0.12 2.6E-06 45.5 8.3 27 69-96 168-194 (416)
408 COG1197 Mfd Transcription-repa 95.2 0.12 2.6E-06 51.3 9.1 76 271-346 642-722 (1139)
409 KOG0730 AAA+-type ATPase [Post 95.2 0.22 4.8E-06 46.3 10.2 142 30-220 428-582 (693)
410 TIGR02655 circ_KaiC circadian 95.2 0.16 3.5E-06 46.9 9.6 52 70-125 263-314 (484)
411 cd00983 recA RecA is a bacter 95.2 0.03 6.6E-07 48.1 4.5 46 70-118 55-100 (325)
412 COG1132 MdlB ABC-type multidru 95.2 0.062 1.3E-06 50.8 7.0 34 174-207 482-515 (567)
413 TIGR01243 CDC48 AAA family ATP 95.1 0.12 2.5E-06 50.6 8.9 53 33-87 450-504 (733)
414 PHA00729 NTP-binding motif con 95.1 0.23 5E-06 40.3 9.1 19 72-90 19-37 (226)
415 TIGR00635 ruvB Holliday juncti 95.1 0.05 1.1E-06 47.0 5.9 18 71-88 31-48 (305)
416 PTZ00454 26S protease regulato 95.1 0.11 2.5E-06 46.4 8.1 55 30-87 139-196 (398)
417 cd00544 CobU Adenosylcobinamid 95.1 0.14 3E-06 39.8 7.7 47 73-125 2-48 (169)
418 TIGR00767 rho transcription te 95.1 0.2 4.4E-06 44.3 9.3 28 67-95 165-192 (415)
419 PRK06647 DNA polymerase III su 95.1 0.18 3.8E-06 47.3 9.6 23 72-94 40-62 (563)
420 TIGR02688 conserved hypothetic 95.1 0.13 2.8E-06 45.8 8.0 26 65-90 204-229 (449)
421 PRK06904 replicative DNA helic 95.1 0.44 9.5E-06 43.8 11.9 122 63-189 214-348 (472)
422 KOG0741 AAA+-type ATPase [Post 95.1 0.39 8.4E-06 43.7 10.9 51 38-88 494-556 (744)
423 TIGR03345 VI_ClpV1 type VI sec 95.1 0.21 4.6E-06 49.4 10.4 33 55-87 187-225 (852)
424 TIGR02397 dnaX_nterm DNA polym 95.0 0.14 3.1E-06 45.2 8.7 19 72-90 38-56 (355)
425 PHA00012 I assembly protein 95.0 0.5 1.1E-05 40.5 11.1 26 73-98 4-29 (361)
426 KOG0740 AAA+-type ATPase [Post 95.0 0.031 6.8E-07 49.5 4.3 33 71-109 187-219 (428)
427 COG0210 UvrD Superfamily I DNA 95.0 0.058 1.3E-06 52.0 6.5 70 55-126 2-72 (655)
428 COG1198 PriA Primosomal protei 95.0 0.16 3.5E-06 48.6 9.1 92 259-351 230-324 (730)
429 PLN03187 meiotic recombination 95.0 0.13 2.9E-06 44.8 7.9 46 9-54 8-53 (344)
430 TIGR01243 CDC48 AAA family ATP 95.0 0.11 2.5E-06 50.6 8.3 19 68-86 210-228 (733)
431 PRK10416 signal recognition pa 94.9 0.61 1.3E-05 40.4 11.8 55 174-228 195-256 (318)
432 PF03266 NTPase_1: NTPase; In 94.9 0.033 7.1E-07 43.2 3.7 34 174-210 94-129 (168)
433 PRK09354 recA recombinase A; P 94.9 0.054 1.2E-06 47.1 5.3 44 70-116 60-103 (349)
434 PRK03992 proteasome-activating 94.8 0.14 3E-06 45.8 8.0 18 70-87 165-182 (389)
435 KOG0058 Peptide exporter, ABC 94.8 0.11 2.5E-06 48.7 7.3 35 174-208 621-655 (716)
436 TIGR03600 phage_DnaB phage rep 94.7 0.62 1.3E-05 42.3 11.9 58 61-121 185-242 (421)
437 PF03796 DnaB_C: DnaB-like hel 94.6 0.29 6.2E-06 41.2 9.0 140 67-216 16-180 (259)
438 COG1618 Predicted nucleotide k 94.6 0.083 1.8E-06 39.9 5.0 117 71-202 6-129 (179)
439 cd01129 PulE-GspE PulE/GspE Th 94.6 0.099 2.1E-06 44.0 6.1 45 47-95 58-104 (264)
440 cd01128 rho_factor Transcripti 94.6 0.32 6.9E-06 40.4 9.0 28 67-95 13-40 (249)
441 PF01637 Arch_ATPase: Archaeal 94.6 0.054 1.2E-06 44.5 4.6 40 177-216 120-165 (234)
442 COG2109 BtuR ATP:corrinoid ade 94.6 0.36 7.9E-06 37.6 8.4 143 72-226 30-175 (198)
443 PRK06305 DNA polymerase III su 94.5 0.49 1.1E-05 43.2 10.7 24 72-95 41-64 (451)
444 PRK10436 hypothetical protein; 94.5 0.087 1.9E-06 47.9 5.9 45 48-96 197-243 (462)
445 KOG0333 U5 snRNP-like RNA heli 94.5 0.39 8.5E-06 43.4 9.5 70 101-180 517-590 (673)
446 PRK08506 replicative DNA helic 94.4 0.55 1.2E-05 43.2 10.9 54 65-122 187-240 (472)
447 cd01130 VirB11-like_ATPase Typ 94.4 0.11 2.3E-06 41.2 5.7 32 56-87 10-42 (186)
448 PRK05800 cobU adenosylcobinami 94.4 0.082 1.8E-06 41.1 4.8 48 72-125 3-50 (170)
449 PRK13764 ATPase; Provisional 94.4 0.085 1.8E-06 49.4 5.7 27 69-96 256-282 (602)
450 PHA00350 putative assembly pro 94.4 0.33 7.2E-06 43.1 9.0 26 73-98 4-30 (399)
451 TIGR03346 chaperone_ClpB ATP-d 94.4 0.76 1.6E-05 45.8 12.5 19 70-88 194-212 (852)
452 KOG0732 AAA+-type ATPase conta 94.4 0.09 1.9E-06 51.8 5.9 154 27-221 256-419 (1080)
453 TIGR00416 sms DNA repair prote 94.3 0.32 7E-06 44.4 9.2 52 70-125 94-145 (454)
454 TIGR02533 type_II_gspE general 94.3 0.12 2.5E-06 47.6 6.3 46 47-96 220-267 (486)
455 PRK14953 DNA polymerase III su 94.3 0.52 1.1E-05 43.4 10.5 19 73-91 41-59 (486)
456 PRK13900 type IV secretion sys 94.3 0.069 1.5E-06 46.5 4.6 43 67-113 157-199 (332)
457 PRK08840 replicative DNA helic 94.3 0.76 1.7E-05 42.1 11.5 60 60-122 207-266 (464)
458 PRK00080 ruvB Holliday junctio 94.3 0.12 2.6E-06 45.2 6.1 19 71-89 52-70 (328)
459 PF06733 DEAD_2: DEAD_2; Inte 94.1 0.033 7.1E-07 43.7 2.2 43 148-190 116-160 (174)
460 PRK07414 cob(I)yrinic acid a,c 94.1 0.7 1.5E-05 35.9 9.2 142 71-224 22-166 (178)
461 PHA02535 P terminase ATPase su 94.1 0.45 9.7E-06 44.2 9.4 86 39-126 122-207 (581)
462 COG2255 RuvB Holliday junction 94.0 0.057 1.2E-06 44.8 3.2 19 71-89 53-71 (332)
463 TIGR02203 MsbA_lipidA lipid A 94.0 0.087 1.9E-06 50.0 5.0 40 174-213 486-525 (571)
464 PRK10865 protein disaggregatio 93.9 0.49 1.1E-05 47.0 10.1 20 70-89 199-218 (857)
465 PRK07399 DNA polymerase III su 93.9 0.52 1.1E-05 40.8 9.1 51 161-214 111-161 (314)
466 PRK14971 DNA polymerase III su 93.9 0.45 9.7E-06 45.3 9.4 40 174-215 120-159 (614)
467 KOG0736 Peroxisome assembly fa 93.9 0.49 1.1E-05 45.0 9.3 52 32-86 668-721 (953)
468 KOG0734 AAA+-type ATPase conta 93.9 0.24 5.1E-06 45.0 7.0 45 175-219 396-450 (752)
469 cd01126 TraG_VirD4 The TraG/Tr 93.9 0.09 1.9E-06 47.1 4.6 49 72-125 1-49 (384)
470 PRK08058 DNA polymerase III su 93.8 0.85 1.8E-05 39.8 10.5 39 174-213 109-147 (329)
471 CHL00176 ftsH cell division pr 93.8 0.22 4.7E-06 47.4 7.3 18 70-87 216-233 (638)
472 COG2812 DnaX DNA polymerase II 93.8 0.14 3.1E-06 46.9 5.8 38 174-215 118-156 (515)
473 CHL00095 clpC Clp protease ATP 93.8 0.63 1.4E-05 46.2 10.7 21 70-90 200-220 (821)
474 COG3267 ExeA Type II secretory 93.8 0.43 9.3E-06 39.2 7.8 44 68-115 48-92 (269)
475 PRK07004 replicative DNA helic 93.8 0.43 9.2E-06 43.7 8.8 57 62-121 205-261 (460)
476 cd01125 repA Hexameric Replica 93.7 0.47 1E-05 39.3 8.4 37 72-108 3-48 (239)
477 PRK14701 reverse gyrase; Provi 93.7 0.33 7.1E-06 51.2 8.8 60 271-330 121-186 (1638)
478 TIGR02538 type_IV_pilB type IV 93.7 0.15 3.3E-06 48.0 6.0 45 47-95 294-340 (564)
479 KOG0338 ATP-dependent RNA heli 93.7 0.61 1.3E-05 42.1 9.2 84 259-346 236-333 (691)
480 PF00437 T2SE: Type II/IV secr 93.7 0.1 2.2E-06 44.2 4.5 43 68-113 125-167 (270)
481 PRK07133 DNA polymerase III su 93.7 0.35 7.6E-06 46.4 8.2 20 73-92 43-62 (725)
482 PRK09087 hypothetical protein; 93.6 0.26 5.7E-06 40.4 6.6 40 177-218 89-128 (226)
483 PF02534 T4SS-DNA_transf: Type 93.6 0.11 2.3E-06 48.0 4.9 50 71-125 45-94 (469)
484 PRK14970 DNA polymerase III su 93.6 0.72 1.6E-05 41.0 9.9 19 72-90 41-59 (367)
485 cd00268 DEADc DEAD-box helicas 93.6 0.8 1.7E-05 36.7 9.4 72 271-346 68-149 (203)
486 PRK05748 replicative DNA helic 93.5 0.87 1.9E-05 41.7 10.5 56 63-121 196-251 (448)
487 COG1219 ClpX ATP-dependent pro 93.5 0.059 1.3E-06 45.5 2.6 55 33-87 44-114 (408)
488 PRK08006 replicative DNA helic 93.5 1.1 2.3E-05 41.3 10.9 120 64-188 218-349 (471)
489 COG0467 RAD55 RecA-superfamily 93.5 0.14 3E-06 43.1 4.9 54 68-125 21-74 (260)
490 TIGR02204 MsbA_rel ABC transpo 93.4 0.11 2.3E-06 49.4 4.6 42 174-215 493-534 (576)
491 PF12846 AAA_10: AAA-like doma 93.4 0.1 2.2E-06 44.9 4.1 41 70-113 1-41 (304)
492 PF03969 AFG1_ATPase: AFG1-lik 93.4 1.9 4.2E-05 38.1 11.9 50 70-125 62-111 (362)
493 PRK13695 putative NTPase; Prov 93.4 1.5 3.4E-05 34.1 10.4 18 72-89 2-19 (174)
494 PRK11174 cysteine/glutathione 93.3 0.071 1.5E-06 50.7 3.3 42 174-215 502-543 (588)
495 TIGR02784 addA_alphas double-s 93.3 0.19 4.2E-06 51.7 6.5 56 70-125 10-65 (1141)
496 PF13481 AAA_25: AAA domain; P 93.3 0.21 4.5E-06 39.8 5.4 63 63-126 24-94 (193)
497 cd03239 ABC_SMC_head The struc 93.2 0.18 4E-06 39.6 4.8 41 174-214 115-156 (178)
498 COG1074 RecB ATP-dependent exo 93.2 0.15 3.1E-06 52.3 5.3 56 69-124 15-72 (1139)
499 PRK11176 lipid transporter ATP 93.2 0.15 3.3E-06 48.4 5.3 42 174-215 497-538 (582)
500 TIGR02640 gas_vesic_GvpN gas v 93.2 0.11 2.4E-06 43.7 3.8 29 62-90 13-41 (262)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-63 Score=389.39 Aligned_cols=342 Identities=75% Similarity=1.133 Sum_probs=331.2
Q ss_pred CCCCCCCCcceeecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHH
Q 018574 12 GGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~ 91 (354)
.....+.+...++++++.+...+|+++|+.+++++.+...||..|...|+.++..+++|++++.++..|+|||.+|...+
T Consensus 6 ~~~~~~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~v 85 (400)
T KOG0328|consen 6 LFTMEDMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISV 85 (400)
T ss_pred hcccccccceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeee
Confidence 34456778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc
Q 018574 92 CQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL 171 (354)
Q Consensus 92 ~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~ 171 (354)
++.+.-+.+..++|++.||++|+.|+.+.+..++...++.+..+.||.+..++..++..+.+++.+||+++.+++++..+
T Consensus 86 lq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L 165 (400)
T KOG0328|consen 86 LQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSL 165 (400)
T ss_pred eeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccc
Confidence 99988888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEE
Q 018574 172 RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV 251 (354)
Q Consensus 172 ~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (354)
..+.+.++|+||++.+++.+|..++..+++.+|++.|++++|||+|.++.++.+.|..+|..+...+++...+++.++|.
T Consensus 166 ~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v 245 (400)
T KOG0328|consen 166 RTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFV 245 (400)
T ss_pred cccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccc
Q 018574 252 AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV 331 (354)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 331 (354)
.+..++||.+.|..+.....-.+++|||+++..++.+.+.+++.++.+...||+++.++|+.++++|++|+.+||++|++
T Consensus 246 ~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 246 AVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV 325 (400)
T ss_pred eechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEech
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCcEEEecCCCCCC
Q 018574 332 WARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 332 ~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+++|+|+|.+++|||||+|.+.
T Consensus 326 waRGiDv~qVslviNYDLP~nr 347 (400)
T KOG0328|consen 326 WARGIDVQQVSLVINYDLPNNR 347 (400)
T ss_pred hhccCCcceeEEEEecCCCccH
Confidence 9999999999999999999875
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-61 Score=393.48 Aligned_cols=326 Identities=30% Similarity=0.504 Sum_probs=312.9
Q ss_pred cCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEE
Q 018574 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (354)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (354)
...++..+|.++++.|+++++++..|+..|+++|+++++.++.|+++|..|.||||||.+|++|+++.+......+.++|
T Consensus 55 ~~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lV 134 (476)
T KOG0330|consen 55 QTDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALV 134 (476)
T ss_pred hhhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEE
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecch
Q 018574 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESD 185 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~h 185 (354)
++|+++|+.|+.+.++.++...++.+..+.||.+...+...+.+.++|+|+||++|.+++++ ..+.+..++++|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999985 67888999999999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHH
Q 018574 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (354)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (354)
++++.+|...+..|++.+|..+|.+++|||++..+..+....+..|..+.........+.+.+.|..++... +...|..
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~yLV~ 293 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYLVY 293 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchhHHH
Confidence 999999999999999999999999999999999999999899999999999988888999999999998877 9999999
Q ss_pred HHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE
Q 018574 266 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF 345 (354)
Q Consensus 266 ~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi 345 (354)
+++...+..+||||++...++.++-.|+..|+.+..+||.|+...|...++.|++|..+||+||+++++|+|+|.+++||
T Consensus 294 ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV 373 (476)
T KOG0330|consen 294 LLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV 373 (476)
T ss_pred HHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 018574 346 FLFLFCNV 353 (354)
Q Consensus 346 ~~~~p~s~ 353 (354)
|||+|.+.
T Consensus 374 NyDiP~~s 381 (476)
T KOG0330|consen 374 NYDIPTHS 381 (476)
T ss_pred ecCCCCcH
Confidence 99999863
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-59 Score=406.28 Aligned_cols=321 Identities=33% Similarity=0.567 Sum_probs=298.3
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc------CCCceeEEE
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALI 106 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~li 106 (354)
..|..+++++.....++..||..|+|+|.+.|+.++.|++++..+.||||||++|++|++.++.. ...++.+||
T Consensus 91 ~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 91 AAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 37889999999999999999999999999999999999999999999999999999999998875 445788999
Q ss_pred EcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
++||++|+.|+.+.+..++....+...++.||.....+...+.++.+|+|+||+++.++++...+.++++.++|+||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHhhC-CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCc--ccccCceeEEEEeccccchHHHH
Q 018574 187 MLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE--LTLEGIKQFFVAVEREEWKFDTL 263 (354)
Q Consensus 187 ~~~~~~~~~~~~i~~~~-~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 263 (354)
|++.+|...+..|+..+ +++.|.++.|||+|..+..+...++.++..+.+.... ....++.+....++.. .+...+
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~-~K~~~l 329 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET-AKLRKL 329 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH-HHHHHH
Confidence 99999999999999999 5566899999999999999999999999888877543 4567788888888744 477777
Q ss_pred HHHHhhC---CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 264 CDLYDTL---TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 264 ~~~l~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
..++... ..+|+||||++++.+++++..|++.++.+..+||+.++.+|..+++.|++|+..|||||+++++|+|+|+
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 7777765 3569999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCCC
Q 018574 341 AILFFFLFLFCNVF 354 (354)
Q Consensus 341 ~~~Vi~~~~p~s~~ 354 (354)
+++|||||+|.|++
T Consensus 410 V~lVInydfP~~vE 423 (519)
T KOG0331|consen 410 VDLVINYDFPNNVE 423 (519)
T ss_pred ccEEEeCCCCCCHH
Confidence 99999999999874
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-57 Score=406.44 Aligned_cols=322 Identities=41% Similarity=0.655 Sum_probs=303.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCcee-EEEEcCC
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQ-ALILSPT 110 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~-~lil~p~ 110 (354)
.+|.++++++.+.+++.+.||..|+++|..+++.++.|+++++.++||+|||.+|++|+++.+.. ...... +||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999774 222222 9999999
Q ss_pred HHHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
++|+.|+++.+..+.... ++.+..+.||.+...+...+..+++|+|+||+++.++++...+.+..+.++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999988 7999999999999999988888899999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcc--cccCceeEEEEeccccchHHHHHHHH
Q 018574 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWKFDTLCDLY 267 (354)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l 267 (354)
.+|.+.+..++..++.+.|.+++|||++..+..+...++.+|..+....... ....+.+++..+.....+...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888775555 78899999999987666999999999
Q ss_pred hhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEec
Q 018574 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFL 347 (354)
Q Consensus 268 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~ 347 (354)
......++||||+++..+++++..|+..|+.+..+||++++.+|.++++.|++|+.+|||||+++++|||+|++++||||
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 018574 348 FLFCNVF 354 (354)
Q Consensus 348 ~~p~s~~ 354 (354)
|+|.+++
T Consensus 349 D~p~~~e 355 (513)
T COG0513 349 DLPLDPE 355 (513)
T ss_pred cCCCCHH
Confidence 9998763
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.9e-55 Score=392.82 Aligned_cols=324 Identities=30% Similarity=0.417 Sum_probs=289.6
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-------CCc
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SRE 101 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-------~~~ 101 (354)
..+..+|+++++++++.+++...||..|+++|.++++.+++|+++++.||||+|||++|++|++..+... ..+
T Consensus 4 ~~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 4 HLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred cCCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 3455789999999999999999999999999999999999999999999999999999999999877532 234
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEE
Q 018574 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVL 181 (354)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvv 181 (354)
+++||++|+++|+.|+.+.+..+....++.+..+.||.+...+...+..+++|+|+||+++.+++....+.+.+++++|+
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 68999999999999999999999988899999999998888877778888999999999999999888888999999999
Q ss_pred ecchhhhccCcHHHHHHHHhhCCC--CCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch
Q 018574 182 DESDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259 (354)
Q Consensus 182 DE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
||||++.+.+|...+..++..++. ..+.+++|||++..........+.++..+...........+.+.+.... ...+
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~-~~~k 242 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS-NEEK 242 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCC-HHHH
Confidence 999999999999999999998874 4567899999999988888888888887777665555555555544433 3347
Q ss_pred HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC
Q 018574 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 260 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
...+..++.....+++||||++++.++.++..|...++.+..+||+++..+|..++++|++|+.+|||||+++++|+|+|
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 88888888877778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCC
Q 018574 340 QAILFFFLFLFCNV 353 (354)
Q Consensus 340 ~~~~Vi~~~~p~s~ 353 (354)
++++||+||+|.|+
T Consensus 323 ~v~~VI~~d~P~s~ 336 (423)
T PRK04837 323 AVTHVFNYDLPDDC 336 (423)
T ss_pred ccCEEEEeCCCCch
Confidence 99999999999986
No 6
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.5e-55 Score=396.37 Aligned_cols=320 Identities=37% Similarity=0.602 Sum_probs=294.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
..+|+++++++.+.+++.+.||..|+++|.++++.+++|+++++.+|||+|||.+|++|+++.+.......++||++|++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 36799999999999999999999999999999999999999999999999999999999999987665566899999999
Q ss_pred HHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
+|+.|+.+.++.+.... ++++..+.|+.+...+...+..+++|+|+||+++.+++.+..+.+.++++||+||||++.+.
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~ 162 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM 162 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc
Confidence 99999999999887654 68899999999988888888888999999999999999888888899999999999999999
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 270 (354)
+|...+..++..++...|.+++|||+++....+...++.++..+...... ....+.+.+..+.... +...+..++...
T Consensus 163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~ 240 (460)
T PRK11776 163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHH 240 (460)
T ss_pred CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988877765543 3455777777777666 888999999888
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
..+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p 320 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELA 320 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018574 351 CNV 353 (354)
Q Consensus 351 ~s~ 353 (354)
.|+
T Consensus 321 ~~~ 323 (460)
T PRK11776 321 RDP 323 (460)
T ss_pred CCH
Confidence 885
No 7
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.2e-55 Score=392.52 Aligned_cols=319 Identities=34% Similarity=0.557 Sum_probs=290.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC------CceeEEEE
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALIL 107 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil 107 (354)
+|+++++++++.+.+.+.||..|+++|.++++.+++++++++.+|||+|||++|++|+++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999998875432 23479999
Q ss_pred cCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh
Q 018574 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~ 187 (354)
+|+++|+.|+.+.+..+....++....+.++.+...+...+...++|+|+||++|.++.....+.++++++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888899999999999888888888888999999999999998888888899999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHH
Q 018574 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (354)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 267 (354)
.+.++...+..++..++...|.+++|||++.....+...++.++..+...........+.+.+..+.... +...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR-KRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999988888888888887776665555566666666555443 777788888
Q ss_pred hhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEec
Q 018574 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFL 347 (354)
Q Consensus 268 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~ 347 (354)
......++||||++++.++.+++.|+..++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+|
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 87777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018574 348 FLFCNV 353 (354)
Q Consensus 348 ~~p~s~ 353 (354)
|+|.++
T Consensus 321 ~~P~~~ 326 (456)
T PRK10590 321 ELPNVP 326 (456)
T ss_pred CCCCCH
Confidence 999985
No 8
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.8e-55 Score=397.63 Aligned_cols=327 Identities=30% Similarity=0.473 Sum_probs=289.7
Q ss_pred ccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-----CC
Q 018574 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SR 100 (354)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-----~~ 100 (354)
...+.+..+|+++++++.+.+.+++.||..|+++|.++|+.+++|+++++.+|||||||++|++|++..+... ..
T Consensus 123 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~ 202 (545)
T PTZ00110 123 ENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGD 202 (545)
T ss_pred CCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCC
Confidence 4456778899999999999999999999999999999999999999999999999999999999998776432 23
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEE
Q 018574 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (354)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vv 180 (354)
++.+|||+||++|+.|+.+.+.+++...++.+..+.++.....+...+..+++|+|+||++|.+++......+.++++||
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lV 282 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLV 282 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEE
Confidence 57899999999999999999999998888999999999888888888888899999999999999998888889999999
Q ss_pred EecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccC-CCeEEEecCCc-ccccCceeEEEEeccccc
Q 018574 181 LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDE-LTLEGIKQFFVAVEREEW 258 (354)
Q Consensus 181 vDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 258 (354)
+||||++++.+|...+..++..++++.|++++|||++.+...+...++. .+..+...... .....+.+.+..+....
T Consensus 283 iDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~- 361 (545)
T PTZ00110 283 LDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE- 361 (545)
T ss_pred eehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh-
Confidence 9999999999999999999999999999999999999998888888775 46665554433 22345566665555443
Q ss_pred hHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Q 018574 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (354)
Q Consensus 259 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 336 (354)
+...+..++... ...++||||++++.++.++..|+..++.+..+||++++.+|..++++|++|+.+|||||+++++|+
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 777777777654 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcEEEecCCCCCC
Q 018574 337 DVQQAILFFFLFLFCNV 353 (354)
Q Consensus 337 di~~~~~Vi~~~~p~s~ 353 (354)
|+|++++||+||+|.|+
T Consensus 442 Di~~v~~VI~~d~P~s~ 458 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQI 458 (545)
T ss_pred CcccCCEEEEeCCCCCH
Confidence 99999999999999985
No 9
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.2e-55 Score=401.48 Aligned_cols=322 Identities=32% Similarity=0.523 Sum_probs=296.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
...+|.++++++.+++++.++||.+|+++|.++++.+++++++++.||||+|||.+|++|++..+.....++++||++|+
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PT 83 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPT 83 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCc
Confidence 34579999999999999999999999999999999999999999999999999999999999888766566789999999
Q ss_pred HHHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
++|+.|+++.+..+.... ++.+..++++.+...+...+..+++|+|+||+++.+++....+.+.++++||+||||+++.
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh
Confidence 999999999999887654 7888999999988888888888899999999999999988888889999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh
Q 018574 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (354)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (354)
.+|...+..++..++...|.+++|||++.....+...++.++..+.+.......+.+.+.+..+.... +...+..++..
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~-k~~~L~~~L~~ 242 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEA 242 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhh-HHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988877776666777777777666544 88888888888
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
....++||||+++..++.+++.|...++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCC
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 018574 350 FCNV 353 (354)
Q Consensus 350 p~s~ 353 (354)
|.++
T Consensus 323 P~~~ 326 (629)
T PRK11634 323 PMDS 326 (629)
T ss_pred CCCH
Confidence 9875
No 10
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.4e-54 Score=394.62 Aligned_cols=321 Identities=31% Similarity=0.479 Sum_probs=287.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-------CCceeE
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQA 104 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~ 104 (354)
..+|+++++++.+.+.|.+.||..|+++|.++++.+++|+++++.+|||+|||++|++|++..+... ...+++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3579999999999999999999999999999999999999999999999999999999999877432 124689
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-CccCCCccEEEEec
Q 018574 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (354)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vvvDE 183 (354)
||++|+++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|.+++... .+.+..+++||+||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999988899999999999888777777778999999999999988764 46678899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCC--CCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHH
Q 018574 184 SDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 261 (354)
Q Consensus 184 ~h~~~~~~~~~~~~~i~~~~~~--~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (354)
+|++.+.+|...+..++..++. ..|++++|||++..+..+...++..+..+...........+.+.+...... .+..
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~k~~ 246 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADE-EKQT 246 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHH-HHHH
Confidence 9999999999999999998876 689999999999999888888888887776665555555666665554443 4788
Q ss_pred HHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCC
Q 018574 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341 (354)
Q Consensus 262 ~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 341 (354)
.+..++......++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 247 ~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 247 LLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 88888888777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCC
Q 018574 342 ILFFFLFLFCNV 353 (354)
Q Consensus 342 ~~Vi~~~~p~s~ 353 (354)
++||+||+|.|+
T Consensus 327 ~~VInyd~P~s~ 338 (572)
T PRK04537 327 KYVYNYDLPFDA 338 (572)
T ss_pred CEEEEcCCCCCH
Confidence 999999999885
No 11
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.4e-53 Score=383.77 Aligned_cols=320 Identities=28% Similarity=0.462 Sum_probs=291.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC----CCceeEEEEcC
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALILSP 109 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil~p 109 (354)
+|+++++++.+.+.+++.||..|+++|.++++.+++|+++++.+|||+|||.+|++|+++.+... ....++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999877532 22357999999
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
+++|+.|+.+.+..+....++.+..+.|+.........+..+++|+|+||++|.+++....+...++++||+||||++.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999998889999999999988887777777899999999999999988888889999999999999999
Q ss_pred cCcHHHHHHHHhhCCCCCcEEEEEeeCch-hHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh
Q 018574 190 RGFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (354)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~~~i~lSaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 268 (354)
.+|...+..+....+...|.+++|||++. ....+...++.++..+...........+.+++........+...+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999888999999999975 46777777788888877776666667788887777766668888999888
Q ss_pred hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
.....++||||++++.++.++..|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 018574 349 LFCNV 353 (354)
Q Consensus 349 ~p~s~ 353 (354)
+|.|.
T Consensus 322 ~p~s~ 326 (434)
T PRK11192 322 MPRSA 326 (434)
T ss_pred CCCCH
Confidence 99885
No 12
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-53 Score=388.45 Aligned_cols=327 Identities=28% Similarity=0.486 Sum_probs=288.3
Q ss_pred cccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-------
Q 018574 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------- 97 (354)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------- 97 (354)
....+.++.+|+++++++.+.+.+.+.||..|+++|.++++.+++|+++++.+|||+|||++|++|++..+..
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~ 192 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPS 192 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccc
Confidence 3445678899999999999999999999999999999999999999999999999999999999999977642
Q ss_pred CCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCcc
Q 018574 98 SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (354)
Q Consensus 98 ~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 177 (354)
...++++||++|+++|+.|+.+.++.+....++....+.+|.....+...+..+++|+|+||++|.+++......+.+++
T Consensus 193 ~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchhee
Confidence 22467899999999999999999999988888888889999888888778888899999999999999988888889999
Q ss_pred EEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEecccc
Q 018574 178 LLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE 257 (354)
Q Consensus 178 ~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (354)
+||+||||++.+.+|...+..++..++ ..|++++|||+++....+...+..++..+...........+.+.+..+....
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh
Confidence 999999999999999999999988884 6799999999999999888888888877776655544455566655555444
Q ss_pred chHHHHHHHHhhCC--CCcEEEEcCchhhHHHHHHHHhc-CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Q 018574 258 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334 (354)
Q Consensus 258 ~~~~~l~~~l~~~~--~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 334 (354)
+...+..++.... ..++||||+++..++.++..|.. .++.+..+||+++..+|..+++.|++|+.+|||||+++++
T Consensus 352 -k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~r 430 (518)
T PLN00206 352 -KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGR 430 (518)
T ss_pred -HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhc
Confidence 6666677776433 35899999999999999999975 5889999999999999999999999999999999999999
Q ss_pred CCCcCCCcEEEecCCCCCC
Q 018574 335 GLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 335 Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+|+|++++||+||+|.|+
T Consensus 431 GiDip~v~~VI~~d~P~s~ 449 (518)
T PLN00206 431 GVDLLRVRQVIIFDMPNTI 449 (518)
T ss_pred cCCcccCCEEEEeCCCCCH
Confidence 9999999999999999985
No 13
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.9e-52 Score=374.16 Aligned_cols=323 Identities=65% Similarity=1.040 Sum_probs=294.4
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
...+|+++++++.+.+++.++||..|+++|.++++.+++++++++.+|||+|||.+|+++++..+.....+.++||++|+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 46889999999999999999999999999999999999999999999999999999999999888655556789999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
++|+.|+.+.+..++...+..+..+.|+.....+...+..+++|+|+||+++.+.+......+.++++||+||+|++.+.
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc
Confidence 99999999999999888888888888988887777778888999999999999988887778899999999999999998
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 270 (354)
++...+..+++.++++.|++++|||++.........+...+..+..........++.+.+........+...+..++...
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETL 265 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhc
Confidence 89889999999999999999999999999888888888888777766666666777777777766666778888888877
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
...++||||++++.++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p 345 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLP 345 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018574 351 CNV 353 (354)
Q Consensus 351 ~s~ 353 (354)
.|+
T Consensus 346 ~s~ 348 (401)
T PTZ00424 346 ASP 348 (401)
T ss_pred CCH
Confidence 875
No 14
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-53 Score=361.48 Aligned_cols=330 Identities=27% Similarity=0.442 Sum_probs=310.6
Q ss_pred ecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-----
Q 018574 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----- 98 (354)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----- 98 (354)
.....+.+..+|++.+++.++++.+.+.||..|+|+|+.+++..++.+++|..+.||||||.+|++|++..+...
T Consensus 236 kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~ 315 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR 315 (673)
T ss_pred cCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch
Confidence 334567889999999999999999999999999999999999999999999999999999999999998776432
Q ss_pred ----CCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCC
Q 018574 99 ----SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (354)
Q Consensus 99 ----~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 174 (354)
..++.++++.||++|++|+.++..+++..+++.+..+.||.+.+++..++..+|+|+|+||+.|.+.+++..+.++
T Consensus 316 ~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~ 395 (673)
T KOG0333|consen 316 LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLN 395 (673)
T ss_pred hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCC-------------------------CcEEEEEeeCchhHHHHHHhccC
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD-------------------------LQVVLISATLPHEILEMTTKFMT 229 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~-------------------------~~~i~lSaT~~~~~~~~~~~~~~ 229 (354)
.+.+||+||++++.+.+|.+.+..++..+|.. .|-+.+|||+++.+..+...++.
T Consensus 396 qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr 475 (673)
T KOG0333|consen 396 QCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR 475 (673)
T ss_pred cCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh
Confidence 99999999999999999999999999999732 68899999999999999999999
Q ss_pred CCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHH
Q 018574 230 DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQK 309 (354)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 309 (354)
+|..+.+.......+.+.|.+..+..+. +...|..++......++|||+|+++.++.+++.|.+.|+.+..+||+-+++
T Consensus 476 ~pv~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qe 554 (673)
T KOG0333|consen 476 RPVVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQE 554 (673)
T ss_pred CCeEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHH
Confidence 9999999988888899999988888887 799999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCCC
Q 018574 310 ERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 310 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
+|..+++.|++|..+|||||+++++|+|+|+|.+||+|||++|++
T Consensus 555 QRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksie 599 (673)
T KOG0333|consen 555 QRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIE 599 (673)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHH
Confidence 999999999999999999999999999999999999999999863
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-55 Score=349.40 Aligned_cols=324 Identities=34% Similarity=0.614 Sum_probs=309.3
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
......|+++.+..+++..+.+.||..|.|+|.++++..+.|++++..|..|+|||-+|.+|++..+.......+++|++
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilV 160 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILV 160 (459)
T ss_pred cccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred CCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh
Q 018574 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (354)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~ 188 (354)
|+++|+.|..+.++.+++..++.+...+||++..++...+..+.+++|+||++++++.+...-.++.+.++|+||||.++
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlL 240 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLL 240 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh
Q 018574 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (354)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 268 (354)
+..|...+..++..+|++.|++++|||+|-.+..++..++..|..+.. .++..+.++.++|..+.... |..-|..+..
T Consensus 241 s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INL-M~eLtl~GvtQyYafV~e~q-KvhCLntLfs 318 (459)
T KOG0326|consen 241 SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINL-MEELTLKGVTQYYAFVEERQ-KVHCLNTLFS 318 (459)
T ss_pred chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeeh-hhhhhhcchhhheeeechhh-hhhhHHHHHH
Confidence 999999999999999999999999999999999999999999987774 45578899999999998777 9999999999
Q ss_pred hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
...-.+.|||||+...++.+++.+.+.|+.|..+|+.|.+++|.+++.+|++|..+.||||+.+.+|+|+++++.|||||
T Consensus 319 kLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFD 398 (459)
T KOG0326|consen 319 KLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFD 398 (459)
T ss_pred HhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018574 349 LFCNVF 354 (354)
Q Consensus 349 ~p~s~~ 354 (354)
+|+++|
T Consensus 399 fpk~aE 404 (459)
T KOG0326|consen 399 FPKNAE 404 (459)
T ss_pred CCCCHH
Confidence 999874
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.7e-52 Score=375.85 Aligned_cols=323 Identities=28% Similarity=0.485 Sum_probs=287.4
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC-------ce
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-------EV 102 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~-------~~ 102 (354)
+....|.++++++.+.+++.+.||..|+++|.++++.+++|+++++.+|||+|||++|++|++..+..... .+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 44567889999999999999999999999999999999999999999999999999999999988765421 46
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEE
Q 018574 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVL 181 (354)
Q Consensus 103 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvv 181 (354)
++|||+|+++|+.|+.+.++.+....++.+..+.||.+...+...+. ..++|+|+||++|..+.......++++++||+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 79999999999999999999998888899999999887766665553 46899999999999988887888899999999
Q ss_pred ecchhhhccCcHHHHHHHHhhCCC--CCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch
Q 018574 182 DESDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259 (354)
Q Consensus 182 DE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
||+|.+.+.++...+..++..++. ..|++++|||++.+.......+..++..+...........+.+.+....... +
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD-K 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh-H
Confidence 999999999999999999888854 5799999999999999999999888887776666555566666666555444 7
Q ss_pred HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC
Q 018574 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 260 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
...+..++......++||||++++.++.+++.|.+.++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|
T Consensus 323 ~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 323 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 78888888887778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCC
Q 018574 340 QAILFFFLFLFCNV 353 (354)
Q Consensus 340 ~~~~Vi~~~~p~s~ 353 (354)
++++||+||+|.|+
T Consensus 403 ~v~~VI~~~~P~s~ 416 (475)
T PRK01297 403 GISHVINFTLPEDP 416 (475)
T ss_pred CCCEEEEeCCCCCH
Confidence 99999999999985
No 17
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-54 Score=362.04 Aligned_cols=322 Identities=29% Similarity=0.470 Sum_probs=299.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCc---eeEEEEc
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILS 108 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~---~~~lil~ 108 (354)
..+|.+++++-.+++++..+||..|+|+|...|+..+-|++++.+|.||+|||.+|++|++.++.....+ .++||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 4589999999999999999999999999999999999999999999999999999999999998765543 4899999
Q ss_pred CCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecchhh
Q 018574 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (354)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~h~~ 187 (354)
||++|+.|+.+..+++..+.++.++.+.||-+...+...+...++|+|+||++|.+++++ ..++++++.++|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 4678899999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEec--cccchHHHHHH
Q 018574 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE--REEWKFDTLCD 265 (354)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 265 (354)
++.+|...++.|.+.++.++|.+++|||++..+..+.+-.+..|+.+.++.+....+.+.+-|.... .+......+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888888887766543 33446777888
Q ss_pred HHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE
Q 018574 266 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF 345 (354)
Q Consensus 266 ~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi 345 (354)
++...-...++||+.++++|..+.-.|-=+|.++.-+||.+++.+|.+.++.|++++++|||||+++++|+||+.+..||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 88877778999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 018574 346 FLFLFCNV 353 (354)
Q Consensus 346 ~~~~p~s~ 353 (354)
||.+|.+.
T Consensus 500 Ny~mP~t~ 507 (691)
T KOG0338|consen 500 NYAMPKTI 507 (691)
T ss_pred eccCchhH
Confidence 99999875
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-53 Score=358.23 Aligned_cols=322 Identities=29% Similarity=0.456 Sum_probs=297.4
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc----CCCceeEE
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----SSREVQAL 105 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~----~~~~~~~l 105 (354)
.....|.++++++...+.|++.+|..++..|++.|+..++|++++-.+.||||||++|+.|+++.+.. ...|.-+|
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 34458999999999999999999999999999999999999999999999999999999999998854 33456799
Q ss_pred EEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecc
Q 018574 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDES 184 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~ 184 (354)
||.||++|+.|+.+.+++++...++....+.||.+...+...+. ..+|+||||++|+.++.. ..+...++.++|+|||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 99999999999999999999999999999999999877776665 489999999999988765 5667789999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCC--cccccCceeEEEEeccccchHHH
Q 018574 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD--ELTLEGIKQFFVAVEREEWKFDT 262 (354)
Q Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 262 (354)
+++++.+|...+..|++.+|..+|.+++|||....+..+....+.+|..+.+... ...+.++.+.|..++... +++.
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~-Ki~~ 303 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED-KIDM 303 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh-HHHH
Confidence 9999999999999999999999999999999999999999999999988876643 456778899999988877 9999
Q ss_pred HHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 263 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
|..+++.+...++|||+.|++++..+++.++++ |++...+||.+++..|.++++.|.....-||+||+++++|+|+|.
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 999999999999999999999999999999876 889999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCC
Q 018574 341 AILFFFLFLFCNV 353 (354)
Q Consensus 341 ~~~Vi~~~~p~s~ 353 (354)
+++||.+|+|+++
T Consensus 384 VdwViQ~DCPedv 396 (758)
T KOG0343|consen 384 VDWVIQVDCPEDV 396 (758)
T ss_pred cceEEEecCchhH
Confidence 9999999999975
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-52 Score=336.55 Aligned_cols=323 Identities=32% Similarity=0.471 Sum_probs=293.8
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
....+|..+|+++|+.+.++.+|+.+|+|.|..+++.+++|++++-.|.||||||.+|.+|+++.+.....+..++|++|
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC----CccCCCccEEEEecch
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESD 185 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~----~~~~~~~~~vvvDE~h 185 (354)
|++|+.|..++|...++..++++..+.||.+.-.+...+.+.++++++||+++..++... .+.+.++.++|+|||+
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 999999999999999999999999999999999998899999999999999998887754 3445789999999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCC--CeEEEecCCcccccCceeEEEEeccccchHHHH
Q 018574 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVEREEWKFDTL 263 (354)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 263 (354)
.+++..|...+..+.+.+|..+|-+++|||++....+....-... ...+....+....+.+.+.|..++... +...+
T Consensus 164 rvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYL 242 (442)
T KOG0340|consen 164 RVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYL 242 (442)
T ss_pred hhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHH
Confidence 999999999999999999999999999999988877766554443 334445566667778888888887766 77777
Q ss_pred HHHHhhCCC---CcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 264 CDLYDTLTI---TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 264 ~~~l~~~~~---~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
..+++...+ +.++||+++..+++.++..|+.+++++..+|+.+++.+|...+..|+++..+|||||+++++|+|||.
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 777776544 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCC
Q 018574 341 AILFFFLFLFCNV 353 (354)
Q Consensus 341 ~~~Vi~~~~p~s~ 353 (354)
+..|||+|+|.+|
T Consensus 323 V~LVvN~diPr~P 335 (442)
T KOG0340|consen 323 VELVVNHDIPRDP 335 (442)
T ss_pred eeEEEecCCCCCH
Confidence 9999999999986
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-51 Score=344.48 Aligned_cols=320 Identities=31% Similarity=0.496 Sum_probs=290.2
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC----Cc-eeEE
Q 018574 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----RE-VQAL 105 (354)
Q Consensus 33 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~----~~-~~~l 105 (354)
..|++++ ++++++.++...||..+||.|...++.++.++++++.++||||||++|++|++..+..+. ++ ..+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4677765 569999999999999999999999999999999999999999999999999999884322 11 3689
Q ss_pred EEcCCHHHHHHHHHHHHHhccC-cCeEEEEEeCCcchHHhHHhhcC-CCeEEEeCcHHHHHHHhcC--CccCCCccEEEE
Q 018574 106 ILSPTRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRK--TLRTRAIKLLVL 181 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vvv 181 (354)
||+||++|+.|+.+.+..+... .++++..+.||.+..++...+.+ ++.|+|+||++|.+++.+. .+....+.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999998887766 68899999999999988887764 5889999999999999874 445569999999
Q ss_pred ecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcc--cccCceeEEEEeccccch
Q 018574 182 DESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWK 259 (354)
Q Consensus 182 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 259 (354)
||||++++.+|...++.|++.+|+.++.=++|||...+...+....+++|..+.+..... ++..+...|..+...+ +
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e-K 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE-K 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH-H
Confidence 999999999999999999999999999999999999999999999999999998887766 7777888888888887 9
Q ss_pred HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCC
Q 018574 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337 (354)
Q Consensus 260 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 337 (354)
...+..++.....+|+|||++|+..+++++..|..+ ......+||.+++..|..+++.|+.-...+|+||+++++|+|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 999999999999999999999999999999999776 567889999999999999999999988899999999999999
Q ss_pred cCCCcEEEecCCCCCC
Q 018574 338 VQQAILFFFLFLFCNV 353 (354)
Q Consensus 338 i~~~~~Vi~~~~p~s~ 353 (354)
+|++++||+||.|.++
T Consensus 323 ip~iD~VvQ~DpP~~~ 338 (567)
T KOG0345|consen 323 IPGIDLVVQFDPPKDP 338 (567)
T ss_pred CCCceEEEecCCCCCh
Confidence 9999999999999875
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.4e-51 Score=342.69 Aligned_cols=322 Identities=28% Similarity=0.433 Sum_probs=291.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC----CCceeEEE
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALI 106 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~li 106 (354)
....|++..+++...++++++||..+++.|...++.++.|+++++.|-||+|||++|++|+++.+... +.+..++|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 35667888999999999999999999999999999999999999999999999999999999988543 34457999
Q ss_pred EcCCHHHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-CccCCCccEEEEecc
Q 018574 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDES 184 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vvvDE~ 184 (354)
+|||++|+.|.+.+++.+.... ++.+..+.||.+...+..++..+++|+|+||++|.+++++. .+...+..++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999887 89999999999999999999889999999999999999884 445566789999999
Q ss_pred hhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccC-CCeEEEecCC--cccccCceeEEEEeccccchHH
Q 018574 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRD--ELTLEGIKQFFVAVEREEWKFD 261 (354)
Q Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 261 (354)
|++++.+|.+.+..|.+.++..+|.+++|||.+..+..+..-.+. ++.++..... ..+.+.+.|.|...+... .+.
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f~ 318 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RFS 318 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hHH
Confidence 999999999999999999999999999999999999998876655 4666665544 345577888888888777 578
Q ss_pred HHHHHHhhCCC-CcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 262 TLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 262 ~l~~~l~~~~~-~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
.+..+++.... .|+||||+|......+++.|+...++|..+||+.++..|..+..+|++.+.-||+||++.++|+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88888887765 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCC
Q 018574 341 AILFFFLFLFCNV 353 (354)
Q Consensus 341 ~~~Vi~~~~p~s~ 353 (354)
+++||.||.|.++
T Consensus 399 V~~VvQ~~~P~d~ 411 (543)
T KOG0342|consen 399 VDWVVQYDPPSDP 411 (543)
T ss_pred ceEEEEeCCCCCH
Confidence 9999999999985
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-51 Score=348.48 Aligned_cols=327 Identities=31% Similarity=0.470 Sum_probs=299.3
Q ss_pred ccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC-----
Q 018574 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR----- 100 (354)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~----- 100 (354)
...+..+..|.+-.+.+.+..+++..++..|+|+|+.+++.+..|++.+++|+||+|||.+|++|++.++.....
T Consensus 67 ~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~ 146 (482)
T KOG0335|consen 67 RDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGE 146 (482)
T ss_pred CccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcc
Confidence 445666779998899999999999999999999999999999999999999999999999999999988854422
Q ss_pred -----ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCC
Q 018574 101 -----EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (354)
Q Consensus 101 -----~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 175 (354)
.+.++|++||++|+.|.+.+.+++.-..+++.....++.+...+.....++++|+|+||++|.++++...+.+.+
T Consensus 147 ~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~ 226 (482)
T KOG0335|consen 147 SGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDN 226 (482)
T ss_pred cCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhh
Confidence 478999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecchhhhc-cCcHHHHHHHHhhCCC----CCcEEEEEeeCchhHHHHHHhccCC-CeEEEecCCcccccCceeE
Q 018574 176 IKLLVLDESDEMLS-RGFKDQIYDVYRYLPP----DLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQF 249 (354)
Q Consensus 176 ~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~~----~~~~i~lSaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 249 (354)
++++|+||||.|++ .+|...++.+...... ..|-+++|||.+..+..+...++.+ ...+.+.......+++.+.
T Consensus 227 ~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~ 306 (482)
T KOG0335|consen 227 CKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQK 306 (482)
T ss_pred CcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeE
Confidence 99999999999999 8999999999988754 6899999999999999988888887 7777777777888999999
Q ss_pred EEEeccccchHHHHHHHHhhCC----CC-----cEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhC
Q 018574 250 FVAVEREEWKFDTLCDLYDTLT----IT-----QAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 320 (354)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~----~~-----~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (354)
...+...+ +...|.+++.... .+ +++|||.+++.+.+++..|...++++..+||+.++.+|.+.++.|++
T Consensus 307 i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 307 ILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 99988777 7777777766433 33 79999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 321 GTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 321 g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+..+||||+++++|+|+|+|+|||+||+|.+.
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~ 418 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADI 418 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcch
Confidence 999999999999999999999999999999873
No 23
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-50 Score=331.44 Aligned_cols=326 Identities=29% Similarity=0.465 Sum_probs=294.4
Q ss_pred cCcccccCccc-CCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc------CC
Q 018574 27 EGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SS 99 (354)
Q Consensus 27 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------~~ 99 (354)
+.+.+..+|++ ++-.+++.+++++.||.+|+|+|.++|+-+++|.+++..+.||+|||++|++|.+-++.. ..
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr 292 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQR 292 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhcc
Confidence 46777788886 678999999999999999999999999999999999999999999999999998877743 23
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEE
Q 018574 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (354)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~v 179 (354)
.++.+|+++|+++|+.|+.-+..++. +.++...++.|+.+..++...++.+.+|+++||++|.++.....+++..+.++
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 46789999999999999998887765 55788889999999999999999999999999999999999999999999999
Q ss_pred EEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCccccc-CceeEEEEeccccc
Q 018574 180 VLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE-GIKQFFVAVEREEW 258 (354)
Q Consensus 180 vvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 258 (354)
|+|||++|++.+|...+.+++-.+++++|.+..|||+|+.+..+...|+.+|..+....-....- .+.+.+ .++.+..
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~ 450 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSE 450 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHH
Confidence 99999999999999999999999999999999999999999999999999998877766655443 444554 6666666
Q ss_pred hHHHHHHHHhhCCC-CcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCC
Q 018574 259 KFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337 (354)
Q Consensus 259 ~~~~l~~~l~~~~~-~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 337 (354)
+...+..+++...+ .|+||||..+..|+.+...|.--|+....+||.-.+.+|+..++.|++|+.+|||+|+.+++|+|
T Consensus 451 k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlD 530 (629)
T KOG0336|consen 451 KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLD 530 (629)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCC
Confidence 88888888887654 69999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecCCCCCCC
Q 018574 338 VQQAILFFFLFLFCNVF 354 (354)
Q Consensus 338 i~~~~~Vi~~~~p~s~~ 354 (354)
+|+++||++||+|.|++
T Consensus 531 v~DiTHV~NyDFP~nIe 547 (629)
T KOG0336|consen 531 VPDITHVYNYDFPRNIE 547 (629)
T ss_pred chhcceeeccCCCccHH
Confidence 99999999999999864
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-49 Score=329.73 Aligned_cols=320 Identities=27% Similarity=0.411 Sum_probs=281.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc------CCCceeEEE
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALI 106 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~li 106 (354)
.+|+++++++.+++++.+.||.+|+-+|+.+|+.+++|++++..|-||||||.+|++|+++.+.. ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 79999999999999999999999999999999999999999999999999999999999998743 345678999
Q ss_pred EcCCHHHHHHHHHHHHHhccCcC--eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCC-ccCCCccEEEEec
Q 018574 107 LSPTRELATQTEKVILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDE 183 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vvvDE 183 (354)
++||++|+.|++..+.++....+ +++.-+..+.+.......+...++|+|+||+.+..++..+. .....+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999888765543 33333443444444445667779999999999999988766 5678899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccc-cCceeEEEEeccccchHHH
Q 018574 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL-EGIKQFFVAVEREEWKFDT 262 (354)
Q Consensus 184 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 262 (354)
||.+++.+|.+.+..+.+.+|+..|.++||||++.++..+...++.+|..+.....+... ..+.+++..+. +.++...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHH
Confidence 999999999999999999999999999999999999999999999999988887777664 44566666666 5558888
Q ss_pred HHHHHhhC-CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----------
Q 018574 263 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD----------- 330 (354)
Q Consensus 263 l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~----------- 330 (354)
+..+++.. -.+|+|||+|+++.+.++.-.|+..|++..++.|+++.+.|-.++++|+.|-++++|+|+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 88877743 458999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------------ccccCCCcCCCcEEEecCCCCCC
Q 018574 331 ------------------------VWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 331 ------------------------~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
-.++|+|+.++.+|+|||+|.++
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~ 384 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETV 384 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCch
Confidence 24689999999999999999985
No 25
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-48 Score=326.24 Aligned_cols=330 Identities=30% Similarity=0.448 Sum_probs=308.4
Q ss_pred ecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-----C
Q 018574 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-----S 98 (354)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-----~ 98 (354)
.....+..+.+|+.++++..+..++.+..|.+|++.|.++++..+.|++++-+|-||||||-+|+.|++-++.. .
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~ 293 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKP 293 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcC
Confidence 34556788999999999999999999999999999999999999999999999999999999999999887743 2
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccE
Q 018574 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (354)
Q Consensus 99 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 178 (354)
..++-.||+|||++|+.|+..+++++++.++++++.++||.+..++...+..++.|||+||++|.++..-...++.+.++
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 45778999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred EEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccc
Q 018574 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW 258 (354)
Q Consensus 179 vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (354)
+|+||+++|++.+|...++.|...++++.|.+++|||++..+..+.+.++.+|+++....-......+.+.+..+++...
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~ 453 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEK 453 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999888777778889999999999888
Q ss_pred hHHHHHHHHh-hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCC
Q 018574 259 KFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337 (354)
Q Consensus 259 ~~~~l~~~l~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 337 (354)
|+..+..-|- ....+++|||+.-+..+++++..|+-.++.+..+||++.+.+|.+++.+|+.+...||++|++..+|+|
T Consensus 454 Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargld 533 (731)
T KOG0339|consen 454 KLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLD 533 (731)
T ss_pred HHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCC
Confidence 8877766554 445589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecCCCCCC
Q 018574 338 VQQAILFFFLFLFCNV 353 (354)
Q Consensus 338 i~~~~~Vi~~~~p~s~ 353 (354)
+|.++.||+||+-.++
T Consensus 534 I~~ikTVvnyD~ardI 549 (731)
T KOG0339|consen 534 IPSIKTVVNYDFARDI 549 (731)
T ss_pred ccccceeecccccchh
Confidence 9999999999998775
No 26
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=317.97 Aligned_cols=322 Identities=39% Similarity=0.624 Sum_probs=296.5
Q ss_pred CcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEE
Q 018574 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (354)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~l 105 (354)
+--+..+|+++.+.|++++.+..++|..|+.+|..+++.++. .++.|.++..|+|||.+|.+.++.+......-+.++
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~i 164 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCI 164 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCce
Confidence 345678999999999999999999999999999999999988 478999999999999999999999998887788999
Q ss_pred EEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecc
Q 018574 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDES 184 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~ 184 (354)
.++|+++|+.|+-+.+.+.+++.+++......+..... -..+ ..+|+++||+.+.+++.. ..+.+..+.++|+|||
T Consensus 165 CLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 165 CLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEA 241 (477)
T ss_pred eeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc--hhheeeCCCccHHHHHHHHHhhChhhceEEEecch
Confidence 99999999999999999999998888877766652111 1111 258999999999998877 7788899999999999
Q ss_pred hhhhcc-CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHH
Q 018574 185 DEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTL 263 (354)
Q Consensus 185 h~~~~~-~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 263 (354)
+.+++. +|++.-..+...++++.|++++|||+......+......++..+.....+....++.++|..+.....|+..+
T Consensus 242 D~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l 321 (477)
T KOG0332|consen 242 DVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQAL 321 (477)
T ss_pred hhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHH
Confidence 999864 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcE
Q 018574 264 CDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAIL 343 (354)
Q Consensus 264 ~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~ 343 (354)
.++.....-+..||||.++..|..++..++..|..+.++||++.-.+|..+++.|++|..+|||+|+++++|||++.++.
T Consensus 322 ~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 322 VNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSV 401 (477)
T ss_pred HHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEE
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 018574 344 FFFLFLFCN 352 (354)
Q Consensus 344 Vi~~~~p~s 352 (354)
|||||+|-.
T Consensus 402 VvNydlP~~ 410 (477)
T KOG0332|consen 402 VVNYDLPVK 410 (477)
T ss_pred EEecCCccc
Confidence 999999964
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-48 Score=327.88 Aligned_cols=329 Identities=26% Similarity=0.423 Sum_probs=280.4
Q ss_pred ecccCcccccCcccCCCCHHHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-----
Q 018574 24 ETTEGVEAITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----- 97 (354)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~----- 97 (354)
..++.+-....|.++|+++.+.+.++. +++..|+..|.++|+.+++|++++|.++||||||++|++|+.+.+..
T Consensus 127 ~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki 206 (708)
T KOG0348|consen 127 QVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI 206 (708)
T ss_pred cccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc
Confidence 334455667889999999999999997 79999999999999999999999999999999999999999998844
Q ss_pred -CCCceeEEEEcCCHHHHHHHHHHHHHhccC-cCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCC
Q 018574 98 -SSREVQALILSPTRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTR 174 (354)
Q Consensus 98 -~~~~~~~lil~p~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~ 174 (354)
+..|+-+||++||++|+.|.++.+.++... ..+-.+.+.||.....+...+.+|+.|+|+||++|.+.+.+ ..+.++
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 345678999999999999999999998764 46677889999999888999999999999999999999887 567788
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCC-------------CCcEEEEEeeCchhHHHHHHhccCCCeEEEecCC--
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-------------DLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-- 239 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~-------------~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (354)
++++||+||+|++++-+|.+.+..|++.+.. ..|-+++|||+...+..+...-+.+|..+..+..
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~ 366 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHS 366 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhh
Confidence 9999999999999999999999999887721 2678999999999999999988999887772110
Q ss_pred -----------------------cccccCceeEEEEeccccchHHHHH----HHHhhCCCCcEEEEcCchhhHHHHHHHH
Q 018574 240 -----------------------ELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLTITQAVIFCNTKRKVDWLTEKM 292 (354)
Q Consensus 240 -----------------------~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~~lvf~~~~~~~~~l~~~l 292 (354)
...++.+.+.|..+++.. .+..|. ...+.....|+|||+.+.+.++.-+..|
T Consensus 367 ~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 367 QLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred hcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCch-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHH
Confidence 112344567788887766 333333 3444556679999999999999988888
Q ss_pred hcC----------------------CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 293 RGY----------------------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 293 ~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
.+. +.+++.+||+|.+++|..+++.|...+-.||+||+++++|+|+|++++||.||.|
T Consensus 446 ~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P 525 (708)
T KOG0348|consen 446 SEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP 525 (708)
T ss_pred HhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC
Confidence 642 3558899999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018574 351 CNV 353 (354)
Q Consensus 351 ~s~ 353 (354)
.++
T Consensus 526 ~s~ 528 (708)
T KOG0348|consen 526 FST 528 (708)
T ss_pred CCH
Confidence 875
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.8e-49 Score=324.79 Aligned_cols=329 Identities=30% Similarity=0.463 Sum_probs=295.5
Q ss_pred eecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcc-------
Q 018574 23 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV------- 95 (354)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~------- 95 (354)
.+....+.++.+|.++.++..+++.+++.|+..|+|+|.+-++.++.|++.|-.+-||||||++|.+|++-.+
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 3445567788999999999999999999999999999999999999999999999999999999999887544
Q ss_pred -ccCCCceeEEEEcCCHHHHHHHHHHHHHhccCc------CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc
Q 018574 96 -DTSSREVQALILSPTRELATQTEKVILAIGDFI------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR 168 (354)
Q Consensus 96 -~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~ 168 (354)
.....++-.||+||+++|+.|..+.+..+...+ .++...+.||.+..++...++.+.+|+|+||++|.+++..
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K 319 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK 319 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH
Confidence 234457789999999999999999888776433 4677889999999999999999999999999999999999
Q ss_pred CCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCcee
Q 018574 169 KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ 248 (354)
Q Consensus 169 ~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (354)
..+.+..++++.+||++++.+.+|...++.++..+...+|.+++|||+|..+..+..+.+-.|..+++.+.....-++.+
T Consensus 320 K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 320 KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877766666655
Q ss_pred EEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEE
Q 018574 249 FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (354)
Q Consensus 249 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 328 (354)
.+..+..+. ++..+.+.++... .+++|||..+.+++.++++|--.|..++.+||+-++++|...++.|+.|+-+|||+
T Consensus 400 evEyVkqEa-KiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVA 477 (610)
T KOG0341|consen 400 EVEYVKQEA-KIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVA 477 (610)
T ss_pred HHHHHHhhh-hhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEE
Confidence 555554444 7777777777654 78999999999999999999888999999999999999999999999999999999
Q ss_pred ccccccCCCcCCCcEEEecCCCCCC
Q 018574 329 TDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|++++.|+|+|++.||||||||..+
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eI 502 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEI 502 (610)
T ss_pred ecchhccCCCccchhhccCCChHHH
Confidence 9999999999999999999999865
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-47 Score=312.96 Aligned_cols=324 Identities=62% Similarity=0.977 Sum_probs=304.5
Q ss_pred cCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEE
Q 018574 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (354)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (354)
.-.+-..+|+++++++++++.+..+||.+|+.+|++++..+..|.++.+++++|+|||.++..++++.+........+++
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qali 99 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALI 99 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999987777788999
Q ss_pred EcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh-cCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecch
Q 018574 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h 185 (354)
++|+++|+.|.......++...+..+..+.|+.+...+...+ ...++|+++||+++...+....+....+.++|+||++
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999999999999999999998887555444 4458999999999999998888888889999999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHH
Q 018574 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (354)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (354)
.++..+|.+.+..+++.++++.|++++|||.+.++....+.+..+|..+.....+...+++.++|..+..+. |...+..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888 9999999
Q ss_pred HHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE
Q 018574 266 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF 345 (354)
Q Consensus 266 ~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi 345 (354)
+.+ .-...+||||+++.+..+...|...+..+..+|+++.+.+|..+++.|+.|..+|||+|+.+++|+|+.++..||
T Consensus 259 l~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 259 LYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred HHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee
Confidence 998 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 018574 346 FLFLFCNV 353 (354)
Q Consensus 346 ~~~~p~s~ 353 (354)
+||+|.+.
T Consensus 337 nydlP~~~ 344 (397)
T KOG0327|consen 337 NYDLPARK 344 (397)
T ss_pred eeccccch
Confidence 99999865
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-48 Score=328.25 Aligned_cols=323 Identities=27% Similarity=0.416 Sum_probs=274.3
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccC----------
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS---------- 98 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~---------- 98 (354)
..+..|..++++..++++|...||..|+++|...++++..| .+++-.|.||||||++|-+|+++.+...
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34678999999999999999999999999999999999998 7999999999999999999999855322
Q ss_pred -CCcee--EEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc---c
Q 018574 99 -SREVQ--ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL---R 172 (354)
Q Consensus 99 -~~~~~--~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~---~ 172 (354)
..+++ +||++||++|+.|+.+.+..+....++.+..+.||-....+..-+...++|+|+||++|..++..... .
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 12334 99999999999999999999999999999999999999888888888899999999999998877554 3
Q ss_pred CCCccEEEEecchhhhccCcHHHHHHHHhhCC-----CCCcEEEEEeeCchh---------------------HHHHHHh
Q 018574 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-----PDLQVVLISATLPHE---------------------ILEMTTK 226 (354)
Q Consensus 173 ~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~-----~~~~~i~lSaT~~~~---------------------~~~~~~~ 226 (354)
+..+.++|+||+|+|+..++...+..+++.+. ..+|-+.+|||+.-. +..+++.
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 46788999999999999998888988888875 357999999997422 1222222
Q ss_pred --ccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeec
Q 018574 227 --FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHG 304 (354)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 304 (354)
+...|..+...+.......+......|+..+ +.-.+..++..++ |++|||||+++.+.+++-.|+.+++....+|+
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e-KD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLE-KDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCccc-cceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 3345666666666665555555555555444 5555556666666 89999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCCC
Q 018574 305 DMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 305 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
.|.+++|-..++.|++....|||||+++++|+|||++.|||||..|++.+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtse 545 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccc
Confidence 99999999999999999999999999999999999999999999999863
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.7e-45 Score=341.51 Aligned_cols=305 Identities=18% Similarity=0.218 Sum_probs=238.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (354)
+++.+.+.+++.||..|+++|.++++.+++|+++++.+|||||||++|++|+++.+... ++.++||++|+++|+.|+.+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999988654 45689999999999999999
Q ss_pred HHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC----CccCCCccEEEEecchhhhccCcHHH
Q 018574 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRGFKDQ 195 (354)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~----~~~~~~~~~vvvDE~h~~~~~~~~~~ 195 (354)
.++.+. ..++++..+.|+....+ ...+..+++|+++||+++...+... ...++++++||+||+|.+.+ .|+..
T Consensus 100 ~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~ 176 (742)
T TIGR03817 100 AVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH 176 (742)
T ss_pred HHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH
Confidence 999887 44788888888876543 3455667899999999986433211 12257899999999999865 34444
Q ss_pred HHHH-------HhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEecc-------------
Q 018574 196 IYDV-------YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER------------- 255 (354)
Q Consensus 196 ~~~i-------~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 255 (354)
+..+ ....+.+.|++++|||+++... ....+...+..+. ..+... ..........+.
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~r 253 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSP-RGARTVALWEPPLTELTGENGAPVR 253 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCC-cCceEEEEecCCccccccccccccc
Confidence 3333 3334567899999999988754 5666676665433 222211 111222211111
Q ss_pred ---ccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC--------CCeEEEeecCCCHHHHHHHHHHHhCCCCc
Q 018574 256 ---EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY--------NFTVSSMHGDMPQKERDAIMGEFRSGTTR 324 (354)
Q Consensus 256 ---~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 324 (354)
...+...+..+++. +.++||||++++.++.++..|++. +.++..+||++++++|.+++++|++|+.+
T Consensus 254 ~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~ 331 (742)
T TIGR03817 254 RSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL 331 (742)
T ss_pred cchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce
Confidence 01234455555553 579999999999999999988753 56788999999999999999999999999
Q ss_pred EEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 325 VLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 325 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+||||+++++|+|+|++++||++|+|.|+
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~P~s~ 360 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGFPGTR 360 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCCCCCH
Confidence 99999999999999999999999999875
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-45 Score=333.88 Aligned_cols=334 Identities=31% Similarity=0.522 Sum_probs=306.6
Q ss_pred CcceeecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-
Q 018574 19 DKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT- 97 (354)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~- 97 (354)
+++.......+.++.+|...|++..++..++++||..|+++|.++|++++.|+++|.+|-||||||++|++|++.++..
T Consensus 351 ~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQ 430 (997)
T KOG0334|consen 351 DGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQ 430 (997)
T ss_pred cceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcC
Confidence 3366677788999999999999999999999999999999999999999999999999999999999999999976643
Q ss_pred ----CCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCC---
Q 018574 98 ----SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--- 170 (354)
Q Consensus 98 ----~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--- 170 (354)
...+|.++|++||++|+.|+.+.++++...+++.+..+.|+.....++..+++++.|+|+||+++.+.+-...
T Consensus 431 r~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grv 510 (997)
T KOG0334|consen 431 RPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRV 510 (997)
T ss_pred CChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcc
Confidence 2347899999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred ccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEE
Q 018574 171 LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF 250 (354)
Q Consensus 171 ~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (354)
.++.+..++|+||+|++++.+|.++...|+..+++..|.+.+|||++..+..+....+..|+.+.+.........+.+.+
T Consensus 511 tnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v 590 (997)
T KOG0334|consen 511 TNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVV 590 (997)
T ss_pred ccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEE
Confidence 34455669999999999999999999999999999999999999999999999999999999988888888888899999
Q ss_pred EEeccccchHHHHHHHHhh-CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEc
Q 018574 251 VAVEREEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329 (354)
Q Consensus 251 ~~~~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 329 (354)
..+..+..++..|..++.. ...+++||||...+.+..+.+.|.+.|+.|..+||+.++.+|..++++|+++...+||+|
T Consensus 591 ~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT 670 (997)
T KOG0334|consen 591 RVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT 670 (997)
T ss_pred EEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh
Confidence 9998666688888888874 456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcCCCcEEEecCCCCC
Q 018574 330 DVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 330 ~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
+.+++|+|++.+.+|||||+|.-
T Consensus 671 svvarGLdv~~l~Lvvnyd~pnh 693 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPNH 693 (997)
T ss_pred hhhhcccccccceEEEEcccchh
Confidence 99999999999999999999974
No 33
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-44 Score=298.32 Aligned_cols=320 Identities=30% Similarity=0.472 Sum_probs=297.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC-CceeEEEEcCC
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPT 110 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~p~ 110 (354)
...|..+|++..+.+++.+.||..|+|+|++-++.++++++++--+-||+|||.++++|+++.+.... .+.+++++.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 68899999999999999999999999999999999999999999999999999999999999987654 45689999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
++|+.|..+..+.++...++....+.|+....++...+...+|||++||+++....-...+.++.+.+|||||++.++..
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999988999999999998877766788889999999999999999
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 270 (354)
+|.+.+.+++..++...|.+++|||+|..+..+.+..+.+|..+..+.+..-.+.....+..+...+ +...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999987777776777777777776666 888888888765
Q ss_pred C-CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 271 T-ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 271 ~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
. .++++||+.+..+++.+...|+..|+.+..+++.+++..|..-+.+|+.++..+||.|+.+.+|+|+|-.+.||+||+
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 4 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018574 350 FCN 352 (354)
Q Consensus 350 p~s 352 (354)
|.+
T Consensus 339 p~~ 341 (529)
T KOG0337|consen 339 PPD 341 (529)
T ss_pred CCC
Confidence 865
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=7.3e-43 Score=326.87 Aligned_cols=309 Identities=15% Similarity=0.242 Sum_probs=237.1
Q ss_pred cCccc--CCCCHHHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 33 TSFDA--MGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 33 ~~~~~--~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
..|.. ++++..+...++. +|+..+++.|.++|+.++.|+++++.+|||+|||++|.+|++.. +..+|||+|
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISP 508 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 508 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeC
Confidence 45764 6777778777776 89999999999999999999999999999999999999999854 235999999
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc------CCCeEEEeCcHHHHH---HHhc--CCccCCCccE
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE------HGVHVVSGTPGRVCD---MIKR--KTLRTRAIKL 178 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~---~~~~--~~~~~~~~~~ 178 (354)
+++|+.++...+... ++....+.++....+....+. ..++|+++||+++.. ++.. .......+.+
T Consensus 509 LiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 999998666666543 577888888876655443222 458999999999852 1211 1112245789
Q ss_pred EEEecchhhhccC--cHHHHHHH--HhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEec
Q 018574 179 LVLDESDEMLSRG--FKDQIYDV--YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254 (354)
Q Consensus 179 vvvDE~h~~~~~~--~~~~~~~i--~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (354)
|||||||++..++ |+..+..+ +....+..+++++|||+++.....+...+.......+. .....+++ .|...+
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL--~y~Vv~ 661 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNL--WYSVVP 661 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccce--EEEEec
Confidence 9999999998876 66666543 33334577899999999988877665554433222222 22334443 333333
Q ss_pred cccchHHHHHHHHhhC-CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccc
Q 018574 255 REEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 333 (354)
Q Consensus 255 ~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 333 (354)
........+..++... .++..||||.+++.++.++..|+..|+.+..|||++++.+|..+++.|..|+.+|||||.+++
T Consensus 662 k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 662 KTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred cchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 3332345666666543 356799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCCcEEEecCCCCCCC
Q 018574 334 RGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 334 ~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
+|||+|++++|||||+|.|++
T Consensus 742 MGIDkPDVR~VIHydlPkSiE 762 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPKSIE 762 (1195)
T ss_pred cCCCccCCcEEEEcCCCCCHH
Confidence 999999999999999999863
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.4e-43 Score=307.26 Aligned_cols=322 Identities=29% Similarity=0.518 Sum_probs=299.9
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.....|+++.+...++..|++.+|..|++.|..+|+.++.+-+.||++..|+|||++|...+++.+.......+.+|++|
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 34577889999999999999999999999999999999999999999999999999999999999888777889999999
Q ss_pred CHHHHHHHHHHHHHhcc-CcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh
Q 018574 110 TRELATQTEKVILAIGD-FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~ 188 (354)
|++++.|+.+.+.+++. ..++++..+.||+....+...++. +.|+||||+++..+.+...++...++++|+||||.+.
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~ 180 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLM 180 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhh
Confidence 99999999999999886 458999999999998887777664 7899999999999999999999999999999999998
Q ss_pred c-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccc-------hH
Q 018574 189 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW-------KF 260 (354)
Q Consensus 189 ~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 260 (354)
+ ..|.+.+..|+..+|..+|++.+|||.+..+...+..++.+|-.+........+-++.+++........ ++
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHH
Confidence 7 579999999999999999999999999999999999999999999999998889999999998776642 56
Q ss_pred HHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 261 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
..|..+++..+..+.||||+....|+-++..|...|+.|.++.|.|++++|..+++.++.-..+|||+|+..++|+|-++
T Consensus 261 q~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~ 340 (980)
T KOG4284|consen 261 QKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADN 340 (980)
T ss_pred HHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccc
Confidence 77777888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCC
Q 018574 341 AILFFFLFLFCN 352 (354)
Q Consensus 341 ~~~Vi~~~~p~s 352 (354)
+++|||.|.|-+
T Consensus 341 vNLVVNiD~p~d 352 (980)
T KOG4284|consen 341 VNLVVNIDAPAD 352 (980)
T ss_pred cceEEecCCCcc
Confidence 999999999975
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-42 Score=312.62 Aligned_cols=288 Identities=16% Similarity=0.295 Sum_probs=220.0
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
.+||..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. +..+||++|+++|+.|+.+.+...+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~g---- 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKASG---- 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHcC----
Confidence 389999999999999999999999999999999999999998753 2358999999999999999887654
Q ss_pred eEEEEEeCCcchHHhH---Hhh-cCCCeEEEeCcHHHHHHH-hcCCc-cCCCccEEEEecchhhhccC--cHHHHHH---
Q 018574 130 IQAHACVGGKSVGEDI---RKL-EHGVHVVSGTPGRVCDMI-KRKTL-RTRAIKLLVLDESDEMLSRG--FKDQIYD--- 198 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~---~~~-~~~~~iiv~T~~~l~~~~-~~~~~-~~~~~~~vvvDE~h~~~~~~--~~~~~~~--- 198 (354)
+....+.++....+.. ..+ ....+|+++||+.+.... ....+ ...++++||+||||++.+++ |...+..
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 6666777665544222 122 234799999999875322 11111 45688999999999998765 5555443
Q ss_pred HHhhCCCCCcEEEEEeeCchhHHHHHHhccC--CCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh-hCCCCcE
Q 018574 199 VYRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TLTITQA 275 (354)
Q Consensus 199 i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~ 275 (354)
+...+ ++.+++++|||+++.....+...+. .+..+.. ....+++. +............+..++. ...++.+
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~--~~v~~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLY--YEVRRKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcE--EEEEeCCccHHHHHHHHHHHhcCCCce
Confidence 33333 5778999999999887665554433 3322221 12233332 2222222235556666665 4455567
Q ss_pred EEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 276 VIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 276 lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
||||+++++++.++..|++.++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++|||+|+|.|+
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~ 307 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSM 307 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=292.81 Aligned_cols=321 Identities=22% Similarity=0.346 Sum_probs=261.2
Q ss_pred ccCcccCCCCHHHHHH----------HHHCCCCCChHHHHHhHhhhhc---------CCcEEEEcCCCCchhhHhHHHHh
Q 018574 32 ITSFDAMGIKDDLLRG----------IYQYGFEKPSAIQQRAVMPIIK---------GRDVIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~Q~~~~~~~~~---------~~~~ii~~~tGsGKT~~~~~~~~ 92 (354)
...|+.+++++..... +.++++....|.|..++++++. .+++.+.||||||||++|.+|+.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3456667766666554 8889999999999999998864 57899999999999999999999
Q ss_pred hccccC-CCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCC-C----eEEEeCcHHHHHHH
Q 018574 93 QTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-V----HVVSGTPGRVCDMI 166 (354)
Q Consensus 93 ~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~iiv~T~~~l~~~~ 166 (354)
+.+... -+..+++||+|+++|+.|+++.+..+....++.++.+.|..+...+..++... + +|+|+||++|.+++
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 999766 34468999999999999999999999999999999999998888877777543 3 89999999999999
Q ss_pred hc-CCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC----------------------------------CCCcEEE
Q 018574 167 KR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP----------------------------------PDLQVVL 211 (354)
Q Consensus 167 ~~-~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~i~ 211 (354)
.+ ..+.+.+++++|+||+|++.+..|...+..+...+. +..+.++
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 85 788899999999999999988776655555544332 2234677
Q ss_pred EEeeCchhHHHHHHhccCCCeEEEec----CCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHH
Q 018574 212 ISATLPHEILEMTTKFMTDPVKILVK----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDW 287 (354)
Q Consensus 212 lSaT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~ 287 (354)
+|||+.++-..+...-+..|...... .....++.+.+.+....... +.-.+..++......++|+|+++.+.+.+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~-kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF-KPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccccc-chHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 88888776666665556666333322 22223344555555554444 78888889999888999999999999999
Q ss_pred HHHHHh----cCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 288 LTEKMR----GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 288 l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
++..|+ .....+..++|.++.+.|...++.|..|++.||||++++++|+|+.++++||+||+|.+.
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ 514 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASD 514 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchh
Confidence 999887 346677779999999999999999999999999999999999999999999999999874
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2e-41 Score=313.82 Aligned_cols=297 Identities=16% Similarity=0.282 Sum_probs=226.7
Q ss_pred CCHHHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 40 IKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 40 ~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
..+...+.+++ +||..++++|.++++.+++|+++++.+|||+|||++|++|++.. ...++|++|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHH
Confidence 34444555555 79999999999999999999999999999999999999998754 235899999999999999
Q ss_pred HHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC--c
Q 018574 119 KVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--F 192 (354)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~--~ 192 (354)
+.+...+ +....+.++........ ... ...+++++||+++........+...++++||+||||++..++ |
T Consensus 83 ~~l~~~g----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 83 DQLLANG----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHHHcC----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 9887654 66666666554443322 122 347899999999864322223344578999999999998765 4
Q ss_pred HHHH---HHHHhhCCCCCcEEEEEeeCchhHHHHHHhccC--CCeEEEecCCcccccCceeEEEEeccccchHHHHHHHH
Q 018574 193 KDQI---YDVYRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (354)
Q Consensus 193 ~~~~---~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 267 (354)
...+ ..+...+ ++.+++++|||++......+...+. ++.... .....+++. +..... ......+..++
T Consensus 159 r~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~---~~~~r~nl~--~~v~~~-~~~~~~l~~~l 231 (607)
T PRK11057 159 RPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI---SSFDRPNIR--YTLVEK-FKPLDQLMRYV 231 (607)
T ss_pred cHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE---CCCCCCcce--eeeeec-cchHHHHHHHH
Confidence 4443 3334443 5788999999998876654444332 333222 112233332 222222 22556677777
Q ss_pred hhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEec
Q 018574 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFL 347 (354)
Q Consensus 268 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~ 347 (354)
....++++||||+++++++.+++.|++.++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||||
T Consensus 232 ~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 232 QEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEe
Confidence 77777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 018574 348 FLFCNV 353 (354)
Q Consensus 348 ~~p~s~ 353 (354)
|+|.|+
T Consensus 312 d~P~s~ 317 (607)
T PRK11057 312 DIPRNI 317 (607)
T ss_pred CCCCCH
Confidence 999985
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.3e-41 Score=319.98 Aligned_cols=309 Identities=18% Similarity=0.253 Sum_probs=227.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC------CCceeEEEEcCCHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTREL 113 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~p~~~l 113 (354)
+++.+.+.+++ +|..|+++|.++++.+++|+++++.+|||+|||.++++|++..+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 57777777666 68899999999999999999999999999999999999999877532 235679999999999
Q ss_pred HHHHHHHHHH-------h----ccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc--cCCCccEE
Q 018574 114 ATQTEKVILA-------I----GDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLL 179 (354)
Q Consensus 114 ~~q~~~~~~~-------~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~v 179 (354)
+.|+.+.+.. + +... ++.+...+|+....+....+.++++|+|+||+++..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 1 2233 6788889999888777767777899999999999877655433 35789999
Q ss_pred EEecchhhhccCcHHH----HHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccC-------CCeEEEecCCcccccCcee
Q 018574 180 VLDESDEMLSRGFKDQ----IYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-------DPVKILVKRDELTLEGIKQ 248 (354)
Q Consensus 180 vvDE~h~~~~~~~~~~----~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 248 (354)
|+||+|.+.+...+.. +..+....+...|.+++|||+++. ......+.. .+..+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 9999999986654433 334444444678999999999763 222222211 111111 111111100100
Q ss_pred EE-----EEecccc---chHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC------CCeEEEeecCCCHHHHHHH
Q 018574 249 FF-----VAVEREE---WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------NFTVSSMHGDMPQKERDAI 314 (354)
Q Consensus 249 ~~-----~~~~~~~---~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~ 314 (354)
.. ....... .....+.++++. ++++||||++++.++.++..|++. +..+..+||++++++|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 00 0001111 112333333332 468999999999999999999863 4578999999999999999
Q ss_pred HHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 315 MGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 315 ~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
++.|++|+.+|||||+.+++|+|+|++++||++|.|.|+
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv 371 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSV 371 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCH
Confidence 999999999999999999999999999999999999875
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-40 Score=309.23 Aligned_cols=292 Identities=17% Similarity=0.257 Sum_probs=227.6
Q ss_pred HHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 47 GIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 47 ~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.+++ +||..++++|.++++.+++|+++++.+|||+|||++|.+|++.. +..++|++|+++|..|+.+.++..+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~g 77 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAAG 77 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHcC
Confidence 4544 89999999999999999999999999999999999999998743 2348999999999999999888754
Q ss_pred cCcCeEEEEEeCCcchHHhHH---h-hcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC--cHHHHHHH
Q 018574 126 DFINIQAHACVGGKSVGEDIR---K-LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDV 199 (354)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~--~~~~~~~i 199 (354)
+.+..+.++....+... . .....+|+++||+++........+...++++||+||||++..++ |...+..+
T Consensus 78 ----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 78 ----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 67777777765543322 1 23458999999999865433334455689999999999998754 55544443
Q ss_pred ---HhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEE
Q 018574 200 ---YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 276 (354)
Q Consensus 200 ---~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l 276 (354)
...++ ..+++++|||++......+...+..+....+. .....+++. +..... ..+...+..++....++++|
T Consensus 154 ~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~nl~--~~v~~~-~~~~~~l~~~l~~~~~~~~I 228 (591)
T TIGR01389 154 GSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPNLR--FSVVKK-NNKQKFLLDYLKKHRGQSGI 228 (591)
T ss_pred HHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCCcE--EEEEeC-CCHHHHHHHHHHhcCCCCEE
Confidence 44443 44599999999988877666555422111111 122233332 222222 23667777778777678999
Q ss_pred EEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 277 IFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 277 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|||++++.++.+++.|+..++.+..+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++|||+|+|.|+
T Consensus 229 If~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 229 IYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred EEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.1e-40 Score=314.48 Aligned_cols=302 Identities=18% Similarity=0.273 Sum_probs=227.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhh-hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
.|+++++++.+.+.+++.|+.+|+|+|.++++. +..|+++++.+|||+|||.++.++++..+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 578999999999999999999999999999998 7789999999999999999999999988753 456999999999
Q ss_pred HHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc
Q 018574 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~ 192 (354)
|+.|..+.++.+.. .++++..++|+...... ....++|+|+||+++..++++....+.++++||+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999987653 47888888887654432 223579999999999888876555567899999999999987777
Q ss_pred HHHHHHHHhhC---CCCCcEEEEEeeCchhHHHHHHhccCC-------CeEEE--ec-CCcccccCceeEEEEeccccch
Q 018574 193 KDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTD-------PVKIL--VK-RDELTLEGIKQFFVAVEREEWK 259 (354)
Q Consensus 193 ~~~~~~i~~~~---~~~~~~i~lSaT~~~~~~~~~~~~~~~-------~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
+..+..++..+ .+..|++++|||+++. ..+...+... |..+. .. ........ .+...........
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 232 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDT 232 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHH
Confidence 77766665443 5678999999999753 2222221111 11100 00 00000000 0000111111112
Q ss_pred HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC------------------------------------CCeEEEee
Q 018574 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------------------------------------NFTVSSMH 303 (354)
Q Consensus 260 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------------------------------~~~~~~~~ 303 (354)
...+...+. .++++||||++++.++.++..|... ...+..+|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 333333333 4579999999999999988887542 13578899
Q ss_pred cCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 304 GDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 304 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
+++++.+|..+++.|++|.++||+||+.+++|+|+|..++||+
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~ 353 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIR 353 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEe
Confidence 9999999999999999999999999999999999999999997
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-41 Score=288.29 Aligned_cols=328 Identities=27% Similarity=0.366 Sum_probs=282.9
Q ss_pred ccCcccccCccc----CCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC---
Q 018574 26 TEGVEAITSFDA----MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--- 98 (354)
Q Consensus 26 ~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~--- 98 (354)
...+....+|.+ ....+.++.++...+|..|++.|.++++.++.+++++.++|||+|||++|.+|++..+...
T Consensus 125 ~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~ 204 (593)
T KOG0344|consen 125 FHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQE 204 (593)
T ss_pred CCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcc
Confidence 334566677776 5678999999999999999999999999999999999999999999999999999888543
Q ss_pred --CCceeEEEEcCCHHHHHHHHHHHHHhc--cCcCeEEEEEeCCcchHHh-HHhhcCCCeEEEeCcHHHHHHHhcCC--c
Q 018574 99 --SREVQALILSPTRELATQTEKVILAIG--DFINIQAHACVGGKSVGED-IRKLEHGVHVVSGTPGRVCDMIKRKT--L 171 (354)
Q Consensus 99 --~~~~~~lil~p~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~--~ 171 (354)
..+.+++|+.|+++|+.|.+.++.++. ...+............... .......++++++||.++...+.... +
T Consensus 205 ~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~i 284 (593)
T KOG0344|consen 205 KHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNI 284 (593)
T ss_pred cCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccc
Confidence 346689999999999999999999988 5555544444433211111 11112237899999999988887754 6
Q ss_pred cCCCccEEEEecchhhhcc-CcHHHHHHHHhhCC-CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeE
Q 018574 172 RTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF 249 (354)
Q Consensus 172 ~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (354)
.+..+..+|+||+|.+... .|..++..+++.+. ++..+-++|||.+.++++.......++..+.+...+.....+.+.
T Consensus 285 dl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 285 DLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred hhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhh
Confidence 7788999999999999998 88889998888775 466778899999999999999999999999998888888889999
Q ss_pred EEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHH-hcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEE
Q 018574 250 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM-RGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (354)
Q Consensus 250 ~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 328 (354)
...+.....++-.+..+++..-..+++||+++.+.|.+++..| .-.++.+.++||+.++.+|++.++.|+.|++.||+|
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 9999999889999999999988889999999999999999999 455889999999999999999999999999999999
Q ss_pred ccccccCCCcCCCcEEEecCCCCCC
Q 018574 329 TDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+++++|+|+.++++||+||+|.+.
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~ 469 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSD 469 (593)
T ss_pred hhhhhccccccCcceEEecCCCchh
Confidence 9999999999999999999999863
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.3e-40 Score=301.52 Aligned_cols=308 Identities=18% Similarity=0.219 Sum_probs=247.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-----CCceeEEEEcCCHHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELA 114 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~p~~~l~ 114 (354)
+++.+.+.++.. |..||+.|.++++.+.+|+++++.||||||||.++++|++..+... ..+..+|||+|-++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999988 8899999999999999999999999999999999999999988765 2356899999999999
Q ss_pred HHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCC--ccCCCccEEEEecchhhhccC-
Q 018574 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRG- 191 (354)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vvvDE~h~~~~~~- 191 (354)
.++...++..+...|+.+..-+|++...+.....+++++|+++||++|.-++.... -.+.++.+||+||.|.+....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999999999888899999999999999987765532 235789999999999997654
Q ss_pred ---cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCC--CeEEEecCCcccccCceeEEEEec------cccchH
Q 018574 192 ---FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVE------REEWKF 260 (354)
Q Consensus 192 ---~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 260 (354)
..-.+..+....+ +.|.+++|||..+. ....+.+.+. +..+....... ...+.-...... .....+
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAK-KLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCC-cceEEEEecCCccccccchhHHHH
Confidence 2233444444444 89999999999753 3444444433 23333222221 111111111111 112245
Q ss_pred HHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCC-CeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC
Q 018574 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 261 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
..+..+++.+. .+|||+||+..++.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+++|||..++-|||+.
T Consensus 244 ~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 56666666543 79999999999999999999886 7899999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCC
Q 018574 340 QAILFFFLFLFCNV 353 (354)
Q Consensus 340 ~~~~Vi~~~~p~s~ 353 (354)
+++.||+++-|+++
T Consensus 322 ~vdlVIq~~SP~sV 335 (814)
T COG1201 322 DIDLVIQLGSPKSV 335 (814)
T ss_pred CceEEEEeCCcHHH
Confidence 99999999999875
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.4e-40 Score=309.30 Aligned_cols=302 Identities=17% Similarity=0.225 Sum_probs=232.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhh-hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
+|+++++++.+.+.+++.|+..|+++|.++++. +..|+++++.+|||+|||.++.++++..+... +.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 578899999999999999999999999999986 78899999999999999999999998877543 457999999999
Q ss_pred HHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc
Q 018574 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~ 192 (354)
|+.|+.+.++.+. ..++++..++|+....... ...++|+|+||+++..++++....++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 4578888888887654322 24589999999999888877666678999999999999988888
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCccccc-C-ceeEEEEeccc------cchHHHHH
Q 018574 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE-G-IKQFFVAVERE------EWKFDTLC 264 (354)
Q Consensus 193 ~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------~~~~~~l~ 264 (354)
+..+..++..+....|++++|||+++. ..+.. ++..... .......... . ..+.+...... ......+.
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVY 232 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHH
Confidence 889999999998899999999999753 33333 3332211 0000000000 0 00011111111 01122333
Q ss_pred HHHhhCCCCcEEEEcCchhhHHHHHHHHhcC---------------------------------CCeEEEeecCCCHHHH
Q 018574 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGY---------------------------------NFTVSSMHGDMPQKER 311 (354)
Q Consensus 265 ~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~~r 311 (354)
+.+. .++++||||++++.++.++..|.+. ...+..+|+++++++|
T Consensus 233 ~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 233 DAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 3343 3578999999999998877666321 2348899999999999
Q ss_pred HHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 312 DAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 312 ~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
..+.+.|++|.++|||||+.+++|+|+|..++||.
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~ 345 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIR 345 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEEC
Confidence 99999999999999999999999999999999994
No 45
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.2e-39 Score=313.04 Aligned_cols=289 Identities=19% Similarity=0.251 Sum_probs=225.5
Q ss_pred HHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 018574 45 LRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 45 ~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
.+.+++ .|+ .|+++|..+++.++.|+++++.||||+|||. +.+++...+.. .+.+++|++||++|+.|+.+.+..
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHH
Confidence 334544 467 8999999999999999999999999999995 44444433332 356799999999999999999999
Q ss_pred hccCcCeEEEEEeCCcch-----HHhHHhhc-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc--------
Q 018574 124 IGDFINIQAHACVGGKSV-----GEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-------- 189 (354)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~-------- 189 (354)
++...++.+..+.++.+. .+....+. .+++|+|+||+.+.+.+. .+...+++++|+||||++++
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~ 223 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKL 223 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhH
Confidence 998888887777766542 22233444 358999999999988776 45556799999999999985
Q ss_pred ---cCcH-HHHHHHHhhCCC------------------------CCcEEEEEeeCchh-HHHHHHhccCCCeEEEecCCc
Q 018574 190 ---RGFK-DQIYDVYRYLPP------------------------DLQVVLISATLPHE-ILEMTTKFMTDPVKILVKRDE 240 (354)
Q Consensus 190 ---~~~~-~~~~~i~~~~~~------------------------~~~~i~lSaT~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (354)
.+|. ..+..++..++. ..|++++|||+++. ... .++.++..+......
T Consensus 224 l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~ 300 (1176)
T PRK09401 224 LYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV 300 (1176)
T ss_pred HHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc
Confidence 4563 567667666653 67999999999864 322 223344445555555
Q ss_pred ccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhh---HHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHH
Q 018574 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGE 317 (354)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 317 (354)
....++.+.|.... .+...+..+++... .++||||++++. ++.+++.|+..|+++..+||++ .+.+++
T Consensus 301 ~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~ 371 (1176)
T PRK09401 301 FYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEK 371 (1176)
T ss_pred cccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHH
Confidence 55677787777654 36667777777654 689999999777 9999999999999999999998 234599
Q ss_pred HhCCCCcEEEE----ccccccCCCcCC-CcEEEecCCCC
Q 018574 318 FRSGTTRVLIT----TDVWARGLDVQQ-AILFFFLFLFC 351 (354)
Q Consensus 318 f~~g~~~vlv~----T~~~~~Gidi~~-~~~Vi~~~~p~ 351 (354)
|++|+.+|||| |+++++|+|+|+ +++|||||+|+
T Consensus 372 F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 372 FEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred HHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999999 689999999999 89999999997
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.3e-39 Score=296.55 Aligned_cols=296 Identities=20% Similarity=0.236 Sum_probs=226.7
Q ss_pred HHHHHHH-CCCCCChHHHHHhHhhhhcCC-cEEEEcCCCCchhhHhHHHHhhccccCCCce-eEEEEcCCHHHHHHHHHH
Q 018574 44 LLRGIYQ-YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREV-QALILSPTRELATQTEKV 120 (354)
Q Consensus 44 ~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~-~~lil~p~~~l~~q~~~~ 120 (354)
+.+.+++ .||. |+|+|.++++.++.|+ ++++.+|||+|||.++.++++.. ......+ +.++++|+++|+.|+++.
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHH
Confidence 3444554 5885 9999999999999997 68888999999998766555533 2223233 455577999999999999
Q ss_pred HHHhccCc-----------------------CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc------
Q 018574 121 ILAIGDFI-----------------------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL------ 171 (354)
Q Consensus 121 ~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~------ 171 (354)
+.++++.+ ++++..+.||.+...++..+..+++|+|+|++.+.+ ..+
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~s----r~L~~gYg~ 157 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGS----RLLFSGYGC 157 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcC----Ccccccccc
Confidence 99888654 488999999999999999999999999999755532 222
Q ss_pred ----------cCCCccEEEEecchhhhccCcHHHHHHHHhhC--CC---CCcEEEEEeeCchhHHHHHHhccCCCeEEEe
Q 018574 172 ----------RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP---DLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (354)
Q Consensus 172 ----------~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~--~~---~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~ 236 (354)
.+.+..++|+|||| ++.+|...+..|++.+ ++ ..|+++||||++.+.......+..++..+..
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V 235 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPV 235 (844)
T ss_pred ccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeec
Confidence 15778999999999 5788999999999964 33 2699999999998877777677666665555
Q ss_pred cCCcccccCceeEEEEeccccchHHHHHHHH---hhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHH-
Q 018574 237 KRDELTLEGIKQFFVAVEREEWKFDTLCDLY---DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERD- 312 (354)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~- 312 (354)
.........+.+++ ..... .+...+...+ .....+++|||||+++.++.+++.|++.++ ..+||++++.+|.
T Consensus 236 ~~~~l~a~ki~q~v-~v~~e-~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~ 311 (844)
T TIGR02621 236 LKKRLAAKKIVKLV-PPSDE-KFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDD 311 (844)
T ss_pred ccccccccceEEEE-ecChH-HHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhh
Confidence 44444444555532 22222 2333322221 123457899999999999999999998776 8999999999999
Q ss_pred ----HHHHHHhC----CC-------CcEEEEccccccCCCcCCCcEEEecCCCCC
Q 018574 313 ----AIMGEFRS----GT-------TRVLITTDVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 313 ----~~~~~f~~----g~-------~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
.+++.|++ |+ ..|||||+++++|+|++. ++||+...|.+
T Consensus 312 ~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP~e 365 (844)
T TIGR02621 312 LVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAPFE 365 (844)
T ss_pred HHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCCHH
Confidence 77899986 44 679999999999999986 89999888754
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.7e-38 Score=299.80 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHhHhhhhcC------CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 39 GIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 39 ~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
+.+..+.+.+.+ ++| +|++.|.++++.+.++ .+.++++|||+|||.+++.+++..+..+ .+++|++||+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~ 510 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTT 510 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcH
Confidence 345556565555 688 6999999999999874 6899999999999999999988877544 5699999999
Q ss_pred HHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh
Q 018574 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~ 187 (354)
+|+.|+++.+++.....++++..++++....+. ...+.. .++|+|+||..+ ...+.+.+++++|+||+|++
T Consensus 511 ~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf 585 (926)
T TIGR00580 511 LLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF 585 (926)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc
Confidence 999999999999888888888888877654332 233333 489999999533 23556789999999999995
Q ss_pred hccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHH
Q 018574 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (354)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 267 (354)
+......++.++.+.++++||||+.+....+......++..+..... ....+...+....... ....+...+
T Consensus 586 -----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~~~~~-i~~~i~~el 657 (926)
T TIGR00580 586 -----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEYDPEL-VREAIRREL 657 (926)
T ss_pred -----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEecCHHH-HHHHHHHHH
Confidence 23344555666778999999999988777666555555554443222 2223333333222111 112222222
Q ss_pred hhCCCCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE
Q 018574 268 DTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF 345 (354)
Q Consensus 268 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi 345 (354)
. .+++++|||++++.++.+++.|++. +.++..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++||
T Consensus 658 ~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 658 L--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred H--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE
Confidence 2 3578999999999999999999885 67899999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 018574 346 FLFLFC 351 (354)
Q Consensus 346 ~~~~p~ 351 (354)
+++.|.
T Consensus 736 i~~a~~ 741 (926)
T TIGR00580 736 IERADK 741 (926)
T ss_pred EecCCC
Confidence 998875
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.1e-38 Score=303.52 Aligned_cols=291 Identities=18% Similarity=0.225 Sum_probs=225.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHHhHhhhhcC------CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHH
Q 018574 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (354)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (354)
+++..+....++| .|++.|.++++.++++ .+++++++||+|||.+++.++...+. .+.+++|++||++|+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHH
Confidence 3445555667888 8999999999999886 78999999999999998887776654 345799999999999
Q ss_pred HHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh---c-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
.|+++.+.+.....++++..+.++.+..++...+ . ..++|+|+||+.+. ..+.+.+++++|+||+|++
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf--- 734 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF--- 734 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc---
Confidence 9999999987767778888888876665554332 2 35899999996442 3445678999999999997
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 270 (354)
++ .....++.++.+.|++++|||+.+....+....+.++..+...... ...+...+........+...+..+.
T Consensus 735 G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~--- 807 (1147)
T PRK10689 735 GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL--- 807 (1147)
T ss_pred ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---
Confidence 22 2234456677889999999999988888777777777655543321 2233333333322221223333333
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE---
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF--- 345 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi--- 345 (354)
.+++++|||++++.++.+++.|++. +.++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 2478999999999999999999887 67899999999999999999999999999999999999999999999999
Q ss_pred --ecCCC
Q 018574 346 --FLFLF 350 (354)
Q Consensus 346 --~~~~p 350 (354)
+||+|
T Consensus 888 ad~fgla 894 (1147)
T PRK10689 888 ADHFGLA 894 (1147)
T ss_pred CCCCCHH
Confidence 66665
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-38 Score=296.23 Aligned_cols=302 Identities=18% Similarity=0.257 Sum_probs=223.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
.|+++++++.+.+.+...++ +++++|.++++.+.+++++++.+|||+|||.++.++++..+..+ .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~-~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCC-CCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 57789999999999999998 59999999999999999999999999999999999988877543 469999999999
Q ss_pred HHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcH
Q 018574 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (354)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~ 193 (354)
+.|+++.+.++. ..+..+....|+...... ....++|+|+||+++..++.+....+.++++||+||+|.+.+.+++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998764 456778777777654332 2235799999999998888776666788999999999999877666
Q ss_pred HHHHHHHh---hCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEE-----EEeccccchHHHHHH
Q 018574 194 DQIYDVYR---YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF-----VAVEREEWKFDTLCD 265 (354)
Q Consensus 194 ~~~~~i~~---~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~ 265 (354)
..+..++. ..+++.|++++|||+++. ..+.. ++.... +. .. ..+..+.... ............+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~-~~--~~-~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL-IK--SN-FRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc-cC--CC-CCCCCeEEEEEecCeeeecccccccccHHH
Confidence 66666544 445688999999999753 33333 332211 00 00 0000000000 001001101111222
Q ss_pred HHhh--CCCCcEEEEcCchhhHHHHHHHHhcC-------------------------CCeEEEeecCCCHHHHHHHHHHH
Q 018574 266 LYDT--LTITQAVIFCNTKRKVDWLTEKMRGY-------------------------NFTVSSMHGDMPQKERDAIMGEF 318 (354)
Q Consensus 266 ~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f 318 (354)
++.. ..++++||||++++.++.++..|.+. ...+..+||++++++|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 2222 24578999999999999999888643 12367899999999999999999
Q ss_pred hCCCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 319 RSGTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 319 ~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
++|..+|||||+.+++|+|+|+. .||+.|.|
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~ 338 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPAR-LVIVRDIT 338 (674)
T ss_pred HcCCCeEEEecchhhccCCCcce-EEEEcCce
Confidence 99999999999999999999975 66666654
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.3e-37 Score=287.83 Aligned_cols=293 Identities=22% Similarity=0.277 Sum_probs=214.7
Q ss_pred HHHHHH-HHHCCCCCChHHHHHhHhhhhcC------CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHH
Q 018574 42 DDLLRG-IYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (354)
Q Consensus 42 ~~~~~~-l~~~~~~~~~~~Q~~~~~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (354)
..+.+. ...++| +|++.|.++++.+.++ .+.++++|||||||.+++++++..+.. +.+++|++||++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 344444 445777 8999999999999875 378999999999999999999887754 45699999999999
Q ss_pred HHHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 115 TQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
.|+++.++++....++++..++|+....+. ...+.. .++|+|+||+.+.. ...+.++++||+||+|++...
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~ 398 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE 398 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH
Confidence 999999999988888999999999875433 233444 49999999976632 344678999999999996322
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 270 (354)
....+.......++++||||+.+....+......+...+ .........+...+..........+.+.+.+ .
T Consensus 399 -----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i--~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~ 469 (681)
T PRK10917 399 -----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVI--DELPPGRKPITTVVIPDSRRDEVYERIREEI--A 469 (681)
T ss_pred -----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEE--ecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--H
Confidence 222333344568899999999876655443222222222 2111112223333322221111223333333 2
Q ss_pred CCCcEEEEcCchh--------hHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 271 TITQAVIFCNTKR--------KVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
.+++++|||+.++ .+..+++.|.+. +.++..+||++++.+|.+++++|++|+.+|||||+++++|+|+|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 4568999999644 456677777765 468999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCC
Q 018574 341 AILFFFLFLFCN 352 (354)
Q Consensus 341 ~~~Vi~~~~p~s 352 (354)
+++||+++.|..
T Consensus 550 v~~VIi~~~~r~ 561 (681)
T PRK10917 550 ATVMVIENAERF 561 (681)
T ss_pred CcEEEEeCCCCC
Confidence 999999999863
No 51
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.4e-37 Score=306.02 Aligned_cols=294 Identities=17% Similarity=0.226 Sum_probs=225.2
Q ss_pred HHHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHH
Q 018574 42 DDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (354)
Q Consensus 42 ~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 120 (354)
.++.+.+++ +|+ .|++.|.++++.+++|+++++.||||+|||..++++++.... ++.+++|++||++|+.|+.+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHH
Confidence 345556666 799 799999999999999999999999999999865555544322 345799999999999999999
Q ss_pred HHHhccCc--CeEEEEEeCCcchHHhH---HhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc-----
Q 018574 121 ILAIGDFI--NIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS----- 189 (354)
Q Consensus 121 ~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~----- 189 (354)
++.+.... ++.+..++|+.+..++. ..+.. .++|+|+||+.+....... ...+++++|+||||+++.
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~kni 219 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNI 219 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecccccccc
Confidence 99987664 45667778887665542 33444 4899999999887765532 226789999999999975
Q ss_pred ------cCcHHHHHH----HHh----------------------hCCCCCc-EEEEEeeCchhHHHHHHhccCCCeEEEe
Q 018574 190 ------RGFKDQIYD----VYR----------------------YLPPDLQ-VVLISATLPHEILEMTTKFMTDPVKILV 236 (354)
Q Consensus 190 ------~~~~~~~~~----i~~----------------------~~~~~~~-~i~lSaT~~~~~~~~~~~~~~~~~~~~~ 236 (354)
.+|.+.+.. +++ .++...| .+.+|||+++.. .. ..++.++..+..
T Consensus 220 d~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~-~~-~~l~~~~l~f~v 297 (1638)
T PRK14701 220 DRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG-DR-VKLYRELLGFEV 297 (1638)
T ss_pred chhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh-HH-HHHhhcCeEEEe
Confidence 366666653 321 2234455 577999998641 11 133456666666
Q ss_pred cCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhh---HHHHHHHHhcCCCeEEEeecCCCHHHHHH
Q 018574 237 KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VDWLTEKMRGYNFTVSSMHGDMPQKERDA 313 (354)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 313 (354)
........++.+.|....... + ..+..+++.. +..+||||++++. ++++++.|++.|+++..+||+ |..
T Consensus 298 ~~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 298 GSGRSALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred cCCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 666666677787777654332 3 4676777765 4689999999775 589999999999999999995 888
Q ss_pred HHHHHhCCCCcEEEEc----cccccCCCcCC-CcEEEecCCCC
Q 018574 314 IMGEFRSGTTRVLITT----DVWARGLDVQQ-AILFFFLFLFC 351 (354)
Q Consensus 314 ~~~~f~~g~~~vlv~T----~~~~~Gidi~~-~~~Vi~~~~p~ 351 (354)
.+++|++|+.+||||| +.+++|||+|+ +++|||||+|+
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk 412 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPK 412 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCC
Confidence 9999999999999999 48899999998 99999999999
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-37 Score=275.84 Aligned_cols=297 Identities=18% Similarity=0.257 Sum_probs=231.7
Q ss_pred HHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
..|++ +|+..+++.|.++++.+++++++++..|||.||+++|-+|++-. .| .+|||.|..+|.....+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G-~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EG-LTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CC-CEEEECchHHHHHHHHHHHHHc
Confidence 44555 79999999999999999999999999999999999999998755 12 5899999999999999999877
Q ss_pred ccCcCeEEEEEeCCcchHHhH---HhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC--cHHHHHH
Q 018574 125 GDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD 198 (354)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~--~~~~~~~ 198 (354)
+ +....+...-+..+.. ..+.. ..++++.+|+++..-.....+....+.+++|||||++..|+ |++.+..
T Consensus 81 G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 G----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred C----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 6 6666666554433332 23333 37999999999976544444445678999999999999886 7776666
Q ss_pred HHhhCC--CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEE
Q 018574 199 VYRYLP--PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 276 (354)
Q Consensus 199 i~~~~~--~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l 276 (354)
+..... ++.+++.+|||.++.+...+...+.......+ ....+++++............+...+.+ ......+..|
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~-~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GI 234 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIF-RGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGI 234 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceE-EecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeE
Confidence 544332 37889999999999988877776654332111 1224455555444443322223332222 2255567799
Q ss_pred EEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCCC
Q 018574 277 IFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 277 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
|||.|++.++.+++.|+..|+.+..||++++.++|..+.++|..++.+|+|||.++++|||-|+++.|||||+|.|++
T Consensus 235 IYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 235 IYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred EEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
No 53
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=9.1e-37 Score=296.40 Aligned_cols=293 Identities=19% Similarity=0.281 Sum_probs=217.6
Q ss_pred HHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 43 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
++.+.+.+.....|+++|..+++.++.|+++++.||||+|||. +++++...+.. .+++++|++||++|+.|+.+.++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHH
Confidence 3444455533448999999999999999999999999999996 55555544432 25679999999999999999999
Q ss_pred HhccCcCeEEE---EEeCCcchHHh---HHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc------
Q 018574 123 AIGDFINIQAH---ACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS------ 189 (354)
Q Consensus 123 ~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~------ 189 (354)
.+....++... .++|+.+..++ ...+.+ +++|+|+||+.+.+.... +.. +++++|+||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHH
Confidence 98876665443 45677665543 223333 489999999999877664 222 789999999999987
Q ss_pred -----cCcHHH-HHHHH----------------------hhCCCCCc--EEEEEeeC-chhHHHHHHhccCCCeEEEecC
Q 018574 190 -----RGFKDQ-IYDVY----------------------RYLPPDLQ--VVLISATL-PHEILEMTTKFMTDPVKILVKR 238 (354)
Q Consensus 190 -----~~~~~~-~~~i~----------------------~~~~~~~~--~i~lSaT~-~~~~~~~~~~~~~~~~~~~~~~ 238 (354)
.+|... +..++ +.++...| ++++|||. +..... .++.+...+....
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC
Confidence 345442 33332 23344444 56789994 443332 2344444455555
Q ss_pred CcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCch---hhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHH
Q 018574 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK---RKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIM 315 (354)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 315 (354)
......++.+.+..... +...+..+++... .++||||+++ +.++++++.|++.|+++..+||+++ ...+
T Consensus 297 ~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l 368 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDED---LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDY 368 (1171)
T ss_pred ccccccceEEEEEeccc---HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHH
Confidence 55556677777664332 2345666666553 6899999999 9999999999999999999999986 3688
Q ss_pred HHHhCCCCcEEEEc----cccccCCCcCC-CcEEEecCCCCC
Q 018574 316 GEFRSGTTRVLITT----DVWARGLDVQQ-AILFFFLFLFCN 352 (354)
Q Consensus 316 ~~f~~g~~~vlv~T----~~~~~Gidi~~-~~~Vi~~~~p~s 352 (354)
+.|++|+.+||||| +.+++|+|+|+ +++|||||+|+-
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999999999994 89999999999 899999999974
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.8e-36 Score=277.75 Aligned_cols=291 Identities=21% Similarity=0.282 Sum_probs=211.3
Q ss_pred HHHHHHHHHCCCCCChHHHHHhHhhhhcC------CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHH
Q 018574 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (354)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (354)
..+.+.++..+| +|++.|.++++.+.++ .+.++++|||||||.+++++++..+.. +.+++|++||++|+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHH
Confidence 344556677888 8999999999999875 258999999999999999999888754 346999999999999
Q ss_pred HHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhc-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC
Q 018574 116 QTEKVILAIGDFINIQAHACVGGKSVGED---IRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~ 191 (354)
|+++.++++....++++..++|+....+. ...+. ..++|+|+||+.+.. ...+.++++||+||+|++....
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH
Confidence 99999999988888999999998765543 22333 347999999987643 3456789999999999863222
Q ss_pred cHHHHHHHHhhCC--CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh-
Q 018574 192 FKDQIYDVYRYLP--PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD- 268 (354)
Q Consensus 192 ~~~~~~~i~~~~~--~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~- 268 (354)
. ..+..... ..+++++||||+.+....+......+...+ .........+...+.. . ... ..+...+.
T Consensus 374 -r---~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i--~~~p~~r~~i~~~~~~--~-~~~-~~~~~~i~~ 443 (630)
T TIGR00643 374 -R---KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSII--DELPPGRKPITTVLIK--H-DEK-DIVYEFIEE 443 (630)
T ss_pred -H---HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeee--ccCCCCCCceEEEEeC--c-chH-HHHHHHHHH
Confidence 1 22222222 267899999999776554432211111111 1111111222222221 1 112 22333222
Q ss_pred h-CCCCcEEEEcCch--------hhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCC
Q 018574 269 T-LTITQAVIFCNTK--------RKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLD 337 (354)
Q Consensus 269 ~-~~~~~~lvf~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 337 (354)
. ..+.+++|||+.. ..++.+++.|.+. +..+..+||++++.+|.+++++|++|+.+|||||+++++|+|
T Consensus 444 ~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvD 523 (630)
T TIGR00643 444 EIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVD 523 (630)
T ss_pred HHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcc
Confidence 2 2356899999876 4466777777653 678999999999999999999999999999999999999999
Q ss_pred cCCCcEEEecCCCC
Q 018574 338 VQQAILFFFLFLFC 351 (354)
Q Consensus 338 i~~~~~Vi~~~~p~ 351 (354)
+|++++||+++.|.
T Consensus 524 iP~v~~VIi~~~~r 537 (630)
T TIGR00643 524 VPNATVMVIEDAER 537 (630)
T ss_pred cCCCcEEEEeCCCc
Confidence 99999999999986
No 55
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=241.17 Aligned_cols=285 Identities=34% Similarity=0.614 Sum_probs=254.4
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
.-|.++-+.|++++++-..||..|...|.+.++...-|-+++++|..|-|||.+|++..++.+.-......++++|++++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 45667779999999999999999999999999999999999999999999999999999999987766778999999999
Q ss_pred HHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-
Q 018574 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR- 190 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~- 190 (354)
|+-|+..+..++.++. ++++..+.||.+...+...+++.++|+|+||+++..+.++..+.+++...+|+|||+.++..
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999999999988765 57889999999988888888889999999999999999999999999999999999998765
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCC-cccccCceeEEEEeccccchHHHHHHHHhh
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (354)
+.++.+.++.+.-|...|++.+|||++.++......++.+|..+.++.. .....++.++|..+...+ +...+..++..
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhhh
Confidence 6789999999999999999999999999999999999999988776654 345678888888887776 77888888888
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
....+++||+.+..... | ..+ +|+|+..++|+|+.+++.|+|||+
T Consensus 281 LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 88899999999976600 2 122 899999999999999999999999
Q ss_pred CCCC
Q 018574 350 FCNV 353 (354)
Q Consensus 350 p~s~ 353 (354)
|.++
T Consensus 326 p~~~ 329 (387)
T KOG0329|consen 326 PEDS 329 (387)
T ss_pred CCCc
Confidence 9985
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=5.4e-36 Score=291.76 Aligned_cols=276 Identities=18% Similarity=0.247 Sum_probs=203.5
Q ss_pred EEcCCCCchhhHhHHHHhhccccC----------CCceeEEEEcCCHHHHHHHHHHHHHhc------------cCcCeEE
Q 018574 75 AQAQSGTGKTSMIALTVCQTVDTS----------SREVQALILSPTRELATQTEKVILAIG------------DFINIQA 132 (354)
Q Consensus 75 i~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~~lil~p~~~l~~q~~~~~~~~~------------~~~~~~~ 132 (354)
|++|||||||++|.+|++..+... ..+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999887542 135689999999999999999886411 1347899
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-CccCCCccEEEEecchhhhccC----cHHHHHHHHhhCCCCC
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLPPDL 207 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vvvDE~h~~~~~~----~~~~~~~i~~~~~~~~ 207 (354)
...+|+.+..++...+.++++|+|+||++|..++... ...++++++|||||+|.+.+.. +...+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988877777778999999999998876543 3457889999999999998653 3445666666667789
Q ss_pred cEEEEEeeCchhHHHHHHhccCC-CeEEEecCCcccccCceeEEEEecccc-------------------c-hHHHHHHH
Q 018574 208 QVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVEREE-------------------W-KFDTLCDL 266 (354)
Q Consensus 208 ~~i~lSaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~l~~~ 266 (354)
|+|++|||+++. .+....+... +..+. .........+. .+....... . .......+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv-~~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVV-NPPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEE-CCCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999874 4444433322 44343 22222111222 111111100 0 00111122
Q ss_pred Hhh-CCCCcEEEEcCchhhHHHHHHHHhcCC---------------------------------CeEEEeecCCCHHHHH
Q 018574 267 YDT-LTITQAVIFCNTKRKVDWLTEKMRGYN---------------------------------FTVSSMHGDMPQKERD 312 (354)
Q Consensus 267 l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~ 312 (354)
+.. ....++||||||++.++.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 234689999999999999999997531 1256789999999999
Q ss_pred HHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 313 AIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 313 ~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+++.|++|+.++||||+.++.|||++++++||++|.|.|+
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sV 358 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSV 358 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCH
Confidence 99999999999999999999999999999999999999875
No 57
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.3e-36 Score=271.75 Aligned_cols=283 Identities=14% Similarity=0.137 Sum_probs=199.1
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEE
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (354)
..|+++|.+++..++.++++++++|||+|||.++...+...+.. ...++||++|+++|+.||.+.+.++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 48999999999999999999999999999998765443322222 2337999999999999999999988754444444
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+.+|.... .+.+|+|+|++++.+... ..+.++++||+||||++.+. .+..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEe
Confidence 555554322 347999999999875432 23468899999999999654 3456666666678899999
Q ss_pred eeCchhHHHH--HHhccCCCeEEEecCCccc------ccCceeEEE--------------------EeccccchHHHHHH
Q 018574 214 ATLPHEILEM--TTKFMTDPVKILVKRDELT------LEGIKQFFV--------------------AVEREEWKFDTLCD 265 (354)
Q Consensus 214 aT~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--------------------~~~~~~~~~~~l~~ 265 (354)
||+....... ...++++ ........+.. ...+..... .......+...+.+
T Consensus 257 ATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9996532211 1112221 11111100000 000000000 00011112222333
Q ss_pred HHhh--CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEc-cccccCCCcCCCc
Q 018574 266 LYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQAI 342 (354)
Q Consensus 266 ~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~~~ 342 (354)
++.. ..+.+++|||+.+++++.+++.|++.+.++..+||+++.++|..+++.|++|+..|||+| +.+++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 3222 234689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEecCCCCCC
Q 018574 343 LFFFLFLFCNV 353 (354)
Q Consensus 343 ~Vi~~~~p~s~ 353 (354)
+||++..|+|.
T Consensus 416 ~vIl~~p~~s~ 426 (501)
T PHA02558 416 HVIFAHPSKSK 426 (501)
T ss_pred EEEEecCCcch
Confidence 99999888763
No 58
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-34 Score=245.84 Aligned_cols=294 Identities=18% Similarity=0.236 Sum_probs=213.3
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEE
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (354)
.+++.||..+....+.+ +.++..|||.|||+.+++.+...+..... ++|+++||+.|+.|++..++++.....-.+.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 48899999999887766 99999999999999998888877765433 7999999999999999999998866666777
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-cHHHHHHHHhhCCCCCcEEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLI 212 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~l 212 (354)
.++|.....+...... ...|+|+||+.+.+-+..+.++..++.++||||||+..... +.......++ ..+++.+++|
T Consensus 91 ~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~-~~k~~~ilgL 168 (542)
T COG1111 91 ALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR-SAKNPLILGL 168 (542)
T ss_pred eecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH-hccCceEEEE
Confidence 8888877665544333 47999999999999999999999999999999999987653 4444444443 4467789999
Q ss_pred EeeCchhHHH---HHHhccCCCeEEEecCCccccc---CceeEEE-----------------------------------
Q 018574 213 SATLPHEILE---MTTKFMTDPVKILVKRDELTLE---GIKQFFV----------------------------------- 251 (354)
Q Consensus 213 SaT~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------------------------------- 251 (354)
||||..+... .+..+.-+.+.+....+.-..+ .+...+.
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 9999655322 2222211111111111100000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 018574 252 -------------------------------------------------------------------------------- 251 (354)
Q Consensus 252 -------------------------------------------------------------------------------- 251 (354)
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~ 328 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP 328 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh
Confidence
Q ss_pred -------------EeccccchHHHHHHHH----hhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEE--Ee-------ecC
Q 018574 252 -------------AVEREEWKFDTLCDLY----DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS--SM-------HGD 305 (354)
Q Consensus 252 -------------~~~~~~~~~~~l~~~l----~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~--~~-------~~~ 305 (354)
.......|+..+..++ +...+.++|||++.+++|+.+.+.|.+.++.+. ++ ..+
T Consensus 329 ~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~G 408 (542)
T COG1111 329 YFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKG 408 (542)
T ss_pred hhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccc
Confidence 0000001222222222 223346899999999999999999999877664 22 246
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCC
Q 018574 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 306 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
|+++++.+++++|++|+++|||||++.++|+|+|.++.||+|+.-.|
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpS 455 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPS 455 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcH
Confidence 99999999999999999999999999999999999999999997654
No 59
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=247.95 Aligned_cols=303 Identities=19% Similarity=0.269 Sum_probs=238.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhh-hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.....+++++++.+.+.++..|+..+.|.|..++++ +++|++.++.++|+||||+..-++-+..+... +.+.|++||
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvP 269 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVP 269 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEeh
Confidence 346778899999999999999999999999999987 77899999999999999998888777776654 457999999
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhH----HhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecch
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI----RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h 185 (354)
..+|++|-++.++.-...+++.+..-.|........ ......+||||+|++-+..+++.+ -.+.+++.||+||+|
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiH 348 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIH 348 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeee
Confidence 999999999999887777888776655543333221 122334899999999998877765 556789999999999
Q ss_pred hhhccCcHHHHHHH---HhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHH
Q 018574 186 EMLSRGFKDQIYDV---YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262 (354)
Q Consensus 186 ~~~~~~~~~~~~~i---~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (354)
.+.+..-+..+..+ ++.+.++.|++++|||..+. .++.+.+-..+.. ++.. +-.+..+.....++..|.+.
T Consensus 349 tL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~--y~~R---PVplErHlvf~~~e~eK~~i 422 (830)
T COG1202 349 TLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVL--YDER---PVPLERHLVFARNESEKWDI 422 (830)
T ss_pred eccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEe--ecCC---CCChhHeeeeecCchHHHHH
Confidence 99765433333333 44455789999999999776 4455554444332 2222 23344455555555558888
Q ss_pred HHHHHhhCC--------CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Q 018574 263 LCDLYDTLT--------ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334 (354)
Q Consensus 263 l~~~l~~~~--------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 334 (354)
+..+.+..- .+++|||++|++.+.+++..|...|++...||++++..+|..+...|.++++.++|+|.+++.
T Consensus 423 i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A 502 (830)
T COG1202 423 IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA 502 (830)
T ss_pred HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhc
Confidence 887776321 268999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCc
Q 018574 335 GLDVQQAI 342 (354)
Q Consensus 335 Gidi~~~~ 342 (354)
|+|+|.-.
T Consensus 503 GVDFPASQ 510 (830)
T COG1202 503 GVDFPASQ 510 (830)
T ss_pred CCCCchHH
Confidence 99999544
No 60
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-33 Score=264.89 Aligned_cols=279 Identities=16% Similarity=0.221 Sum_probs=211.4
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH-HhccCcCeEEEEE
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHAC 135 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~~ 135 (354)
..+-.++++.+..++++++.|+||||||+++.++++.... .+.+++++.|+++++.|+++.+. .++...+..+...
T Consensus 4 ~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 4 HAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred hHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 3444567777888999999999999999999999987763 23479999999999999999885 4444555555544
Q ss_pred eCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh-hhccCcHH-HHHHHHhhCCCCCcEEEEE
Q 018574 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~-~~~~~~~~-~~~~i~~~~~~~~~~i~lS 213 (354)
..+.+ .....++|+|+|++.|.+.+.. ...+.++++||+||+|. .++.++.- .+..+...++++.|+++||
T Consensus 81 vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 81 VRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred Ecccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 44332 1334579999999999988875 34678999999999995 55555432 3455666677899999999
Q ss_pred eeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch----HHHHHHHHhhCCCCcEEEEcCchhhHHHHH
Q 018574 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK----FDTLCDLYDTLTITQAVIFCNTKRKVDWLT 289 (354)
Q Consensus 214 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~ 289 (354)
||++... ...++.++..+...... ..+.+.|......... ...+..++.. ..+++|||+++.++++.++
T Consensus 154 ATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 154 ATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred CCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHH
Confidence 9998764 34556554444433321 1244555544333211 1233444443 3578999999999999999
Q ss_pred HHHhc---CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCC
Q 018574 290 EKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 290 ~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
+.|++ .++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|+.
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~ 292 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARV 292 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccc
Confidence 99987 3788999999999999999999999999999999999999999999999999999974
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.3e-33 Score=264.36 Aligned_cols=279 Identities=17% Similarity=0.230 Sum_probs=211.7
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH-hccCcCeEEEEE
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHAC 135 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~ 135 (354)
+.+-.++++.+.+++++++.|+||||||+++.++++..... +.+++++.|+++++.|+++.+.. ++...+..+...
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 44556777888889999999999999999999998876432 23699999999999999999854 555566666666
Q ss_pred eCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh-hccCc-HHHHHHHHhhCCCCCcEEEEE
Q 018574 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGF-KDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~-~~~~~-~~~~~~i~~~~~~~~~~i~lS 213 (354)
.++.+. ......|+|+|++.+.+.+.. ...+.++++||+||+|.. ++.++ ...+..+.+.++++.|+++||
T Consensus 84 vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 84 MRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred ecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 555432 223468999999999988775 446789999999999973 33332 234455667777889999999
Q ss_pred eeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchH----HHHHHHHhhCCCCcEEEEcCchhhHHHHH
Q 018574 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF----DTLCDLYDTLTITQAVIFCNTKRKVDWLT 289 (354)
Q Consensus 214 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~~~~lvf~~~~~~~~~l~ 289 (354)
||++.+. ...++.++..+..... ...+.+.|.......... ..+..++.. ..+.+|||+++.++++.++
T Consensus 157 ATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 157 ATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred cCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 9998753 2455555444443322 123455555444333111 134444443 3588999999999999999
Q ss_pred HHHhc---CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCC
Q 018574 290 EKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 290 ~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
+.|++ .++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|+.
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccc
Confidence 99986 4778999999999999999999999999999999999999999999999999999864
No 62
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=266.11 Aligned_cols=309 Identities=20% Similarity=0.257 Sum_probs=241.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (354)
.+..+..++.+.|+..|+.||.+++..+.+|++++|..|||||||.+|++|+++.+...... ++|+|.|+++|++.+.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 45566889999999999999999999999999999999999999999999999999877654 79999999999999999
Q ss_pred HHHHhccCcC--eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHh-cC---CccCCCccEEEEecchhhhccC--
Q 018574 120 VILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK-RK---TLRTRAIKLLVLDESDEMLSRG-- 191 (354)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~-~~---~~~~~~~~~vvvDE~h~~~~~~-- 191 (354)
+++++....+ +++...+|++...+....+.++++|+++||++|-..+. +. .+.++++++||+||+|.+-...
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 9999988777 88888899988887777788899999999999977443 32 3345779999999999874331
Q ss_pred ----cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEecc--------ccch
Q 018574 192 ----FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER--------EEWK 259 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 259 (354)
..+.+..+++..+.+.|+++.|||.... .+....+.+......+... ..+..........+. ....
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~-g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED-GSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC-CCCCCceEEEEeCCcchhhhhhcccch
Confidence 2244444455556789999999999776 4455555555544432222 222223333333320 1124
Q ss_pred HHHHHHHHhhC--CCCcEEEEcCchhhHHHHH----HHHhcCC----CeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEc
Q 018574 260 FDTLCDLYDTL--TITQAVIFCNTKRKVDWLT----EKMRGYN----FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT 329 (354)
Q Consensus 260 ~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 329 (354)
...+..+.... .+-++|+|+.+++.++.++ ..+...+ ..+..+++++.+.+|.++.+.|++|+..++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 44444444433 4568999999999999997 4444445 568899999999999999999999999999999
Q ss_pred cccccCCCcCCCcEEEecCCCC
Q 018574 330 DVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 330 ~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
++++.|+|+.+++.||..+.|.
T Consensus 372 ~AlelgidiG~ldavi~~g~P~ 393 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPG 393 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCC
Confidence 9999999999999999999998
No 63
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1e-32 Score=265.23 Aligned_cols=296 Identities=19% Similarity=0.250 Sum_probs=215.1
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEE
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (354)
.++++||.+++..++.+ ++++.+|||+|||.++++++...+. ..+.++||++|+++|+.||.+.++.+....+..+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 48899999999988877 8999999999999998888887763 34467999999999999999999987654445677
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+.|+...... ......++|+|+||+.+...+....+...++++|||||||++........+...+.......+++++|
T Consensus 91 ~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 77777665443 33444679999999999888777778888999999999999865533333444444444567799999
Q ss_pred eeCchhH---HHHHHhccCCCeEEE--------------------ecCCc-------------------------c----
Q 018574 214 ATLPHEI---LEMTTKFMTDPVKIL--------------------VKRDE-------------------------L---- 241 (354)
Q Consensus 214 aT~~~~~---~~~~~~~~~~~~~~~--------------------~~~~~-------------------------~---- 241 (354)
||+.... ......+......+. ..-.. .
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 9984332 111221111000000 00000 0
Q ss_pred ---ccc-------CceeE--------------------------------------------------------------
Q 018574 242 ---TLE-------GIKQF-------------------------------------------------------------- 249 (354)
Q Consensus 242 ---~~~-------~~~~~-------------------------------------------------------------- 249 (354)
... .+...
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 000 00000
Q ss_pred ---------EEEeccccchHHHHHHHHhh----CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecC--------CCH
Q 018574 250 ---------FVAVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD--------MPQ 308 (354)
Q Consensus 250 ---------~~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~~~ 308 (354)
...+.....|...+.++++. ..++++||||++++.++.+++.|...++.+..++|. +++
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 00001112245555555543 466799999999999999999999889999999886 888
Q ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+|.++++.|++|+.+|||+|+++++|+|+|++++||+||.|+|+
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~ 454 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSE 454 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCH
Confidence 899999999999999999999999999999999999999999875
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.5e-33 Score=256.54 Aligned_cols=277 Identities=18% Similarity=0.192 Sum_probs=196.8
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHh---------HHHHhhcccc---CCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI---------ALTVCQTVDT---SSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~---------~~~~~~~~~~---~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
-..|.++++.+++++++++.|+||+|||.+. +++.+..+.. .....++++++|+++|+.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999873 2333333321 223457999999999999999988765
Q ss_pred ccC---cCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHh
Q 018574 125 GDF---INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (354)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~ 201 (354)
... .+..+....|+... ..........+++++|++.. ...+.++++||+||+|.+...+ +.+..+++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHH
Confidence 533 24556667777652 22222233678999997521 1235688999999999986554 45555554
Q ss_pred hCC-CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEecc---------ccchHHHHHHHHhh--
Q 018574 202 YLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER---------EEWKFDTLCDLYDT-- 269 (354)
Q Consensus 202 ~~~-~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~-- 269 (354)
... ...|+++||||++.+...+ ..++.++..+..... ....+.+.|..... ...+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 443 3458999999998877665 567777766665422 23445555543221 11122222222222
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHH-hCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEF-RSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
...+++|||++++++++.+++.|++. ++.+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|++++||+
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 23468999999999999999999876 68999999999864 4667777 6899999999999999999999999999
Q ss_pred cC
Q 018574 347 LF 348 (354)
Q Consensus 347 ~~ 348 (354)
+|
T Consensus 471 ~G 472 (675)
T PHA02653 471 TG 472 (675)
T ss_pred CC
Confidence 99
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=6.2e-33 Score=244.31 Aligned_cols=273 Identities=17% Similarity=0.158 Sum_probs=186.1
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcch----------
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSV---------- 141 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------- 141 (354)
++++.+|||+|||.+++.+++..+... .+.+++|++|+++|+.|+.+.+..+... .+..++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 478999999999999999999876543 4457999999999999999999886421 23333333221
Q ss_pred --HHhHHhh------cCCCeEEEeCcHHHHHHHhcCC----c--cCCCccEEEEecchhhhccCcHHHHHHHHhhCC-CC
Q 018574 142 --GEDIRKL------EHGVHVVSGTPGRVCDMIKRKT----L--RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PD 206 (354)
Q Consensus 142 --~~~~~~~------~~~~~iiv~T~~~l~~~~~~~~----~--~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~-~~ 206 (354)
....... ....+|+++||+++...+.... . .....++||+||+|.+....+.. +..+++.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 0001111 1136799999999987665411 1 11223789999999987654333 444444443 47
Q ss_pred CcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEE-eccccchHHHHHHHHhhC-CCCcEEEEcCchhh
Q 018574 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA-VEREEWKFDTLCDLYDTL-TITQAVIFCNTKRK 284 (354)
Q Consensus 207 ~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~ 284 (354)
.|++++|||++.............+........... ....+.+.. ......+...+..++... .++++||||+++++
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 899999999997766665554332211111111000 011222211 112223455566665543 45799999999999
Q ss_pred HHHHHHHHhcCCC--eEEEeecCCCHHHHHH----HHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 285 VDWLTEKMRGYNF--TVSSMHGDMPQKERDA----IMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 285 ~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
++.+++.|++.+. .+..+||++++.+|.+ +++.|++|+.+|||||+++++|+|++ ++.||+++.|-
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~~ 306 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAPI 306 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCCH
Confidence 9999999987655 5899999999999876 48899999999999999999999996 88999988774
No 66
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=259.33 Aligned_cols=301 Identities=19% Similarity=0.253 Sum_probs=224.2
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
..+++.+.+.++..++.++.+.|+.++..... ++|+++++|||+|||..+++.++..+..+ +.+++|+||+++|+.+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~E 91 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEE 91 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHH
Confidence 34788899999999999999999999988666 49999999999999999999999988765 4569999999999999
Q ss_pred HHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHH
Q 018574 117 TEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 196 (354)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~ 196 (354)
.++++. ....+++++...+|+.....+ ...+++|+|+||+++....++.......+++||+||+|.+.+..-+..+
T Consensus 92 k~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l 167 (766)
T COG1204 92 KYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL 167 (766)
T ss_pred HHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee
Confidence 999998 445778999999999876553 2235899999999999998887778889999999999999776444444
Q ss_pred HHHHhhC---CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCccccc-CceeEEEEecccc------chHHHHHHH
Q 018574 197 YDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE-GIKQFFVAVEREE------WKFDTLCDL 266 (354)
Q Consensus 197 ~~i~~~~---~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~l~~~ 266 (354)
..+.... ....|++++|||+++. .++......++............+ ...+.+....... .....+...
T Consensus 168 E~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v 246 (766)
T COG1204 168 ESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELV 246 (766)
T ss_pred hhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHH
Confidence 4444443 3447999999999874 444444433333111111111111 1122222221111 123333333
Q ss_pred HhhC-CCCcEEEEcCchhhHHHHHHHHhcC-------------------------------------CCeEEEeecCCCH
Q 018574 267 YDTL-TITQAVIFCNTKRKVDWLTEKMRGY-------------------------------------NFTVSSMHGDMPQ 308 (354)
Q Consensus 267 l~~~-~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~ 308 (354)
+... .+++++|||++++.+...++.+++. ...+.++|++++.
T Consensus 247 ~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~ 326 (766)
T COG1204 247 LESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPR 326 (766)
T ss_pred HHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCH
Confidence 3333 4569999999999999999988730 0126678999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE
Q 018574 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF 345 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi 345 (354)
++|..+.+.|+.|+++||+||+.++.|+|+|.-+.||
T Consensus 327 ~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VII 363 (766)
T COG1204 327 EDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVII 363 (766)
T ss_pred HHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEE
Confidence 9999999999999999999999999999999554444
No 67
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=2.1e-32 Score=221.78 Aligned_cols=200 Identities=47% Similarity=0.812 Sum_probs=182.0
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC--CCceeEEEEcCCHH
Q 018574 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRE 112 (354)
Q Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~ 112 (354)
|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++.+|||+|||.+++++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 7889999999999999999999999999999999999999999999999999999999888776 45678999999999
Q ss_pred HHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc
Q 018574 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~ 192 (354)
|+.|+.+.++.+....++.+..+.++....+....+..+++|+|+||+.+.+.+........+++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988778888889998887776666666799999999999998888777788999999999999988888
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEE
Q 018574 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (354)
Q Consensus 193 ~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~ 234 (354)
...+..+.+.++.+.|++++|||+++........++.++..+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999998899999999999999999888888887654
No 68
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-32 Score=250.21 Aligned_cols=275 Identities=16% Similarity=0.138 Sum_probs=189.2
Q ss_pred CChHHHHHhHhhhhc-C--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeE
Q 018574 55 KPSAIQQRAVMPIIK-G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~-~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (354)
.+++||.+++.++.. + +..++.+|||+|||.+.+..+... +.++|||||+..|+.||.+++.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 689999999998874 3 478999999999998887665432 2359999999999999999999986544455
Q ss_pred EEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc--------CCccCCCccEEEEecchhhhccCcHHHHHHHHhhC
Q 018574 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (354)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~ 203 (354)
+..+.++.... ......|+|+|++.+.....+ ..+....+++||+||||++.+.. +..++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHHHhc
Confidence 55555543221 122368999999887532211 12334578999999999985544 34444444
Q ss_pred CCCCcEEEEEeeCchhHH--HHHHhccCCCeEEEecC------CcccccCceeEEEEec--------------------c
Q 018574 204 PPDLQVVLISATLPHEIL--EMTTKFMTDPVKILVKR------DELTLEGIKQFFVAVE--------------------R 255 (354)
Q Consensus 204 ~~~~~~i~lSaT~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------~ 255 (354)
. ....++|||||..+.. ..+..+++ |..+...- +..........+..+. .
T Consensus 400 ~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 Q-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred C-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 3 4457999999954321 11222222 22111111 1011100000011111 1
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCC-CCcEEEEcccc
Q 018574 256 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRVLITTDVW 332 (354)
Q Consensus 256 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 332 (354)
...|...+..+++.+ .++++||||++.+.+..++..|. +..+||+++..+|.++++.|+.| ..++||+|.++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 112556666666654 56799999999999999998873 46689999999999999999875 78999999999
Q ss_pred ccCCCcCCCcEEEecCCCC
Q 018574 333 ARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 333 ~~Gidi~~~~~Vi~~~~p~ 351 (354)
.+|+|+|++++||+++.|.
T Consensus 553 deGIDlP~a~vvI~~s~~~ 571 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHY 571 (732)
T ss_pred ccccCCCCCCEEEEeCCCC
Confidence 9999999999999999884
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.8e-31 Score=232.42 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=188.1
Q ss_pred HHHHhHhhhhcCCc--EEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccC----cCeEE
Q 018574 59 IQQRAVMPIIKGRD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF----INIQA 132 (354)
Q Consensus 59 ~Q~~~~~~~~~~~~--~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~----~~~~~ 132 (354)
+|.++++.+.++++ +++.+|||+|||.+++++++.. +.++++++|+++|+.|+.+.++.+... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998874 7889999999999999988742 235899999999999999998887632 24555
Q ss_pred EEEeCCcchH--Hh------------------HHhhcCCCeEEEeCcHHHHHHHhcC----C----ccCCCccEEEEecc
Q 018574 133 HACVGGKSVG--ED------------------IRKLEHGVHVVSGTPGRVCDMIKRK----T----LRTRAIKLLVLDES 184 (354)
Q Consensus 133 ~~~~~~~~~~--~~------------------~~~~~~~~~iiv~T~~~l~~~~~~~----~----~~~~~~~~vvvDE~ 184 (354)
..+.|....+ .. ......++.|+++||+.+..+++.. . ....++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 5555542211 00 0011236789999999997655431 1 02368899999999
Q ss_pred hhhhccCc-----HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhc--cCCCeEEEecCCcc----------------
Q 018574 185 DEMLSRGF-----KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDEL---------------- 241 (354)
Q Consensus 185 h~~~~~~~-----~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~--~~~~~~~~~~~~~~---------------- 241 (354)
|.+...+. ......+++......+++++|||+++.....+... .+.+..........
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99754331 11233333433445799999999998877777654 34333222111000
Q ss_pred --cccCceeEEEEeccccchHHHHHHH-------HhhCCCCcEEEEcCchhhHHHHHHHHhcCC--CeEEEeecCCCHHH
Q 018574 242 --TLEGIKQFFVAVEREEWKFDTLCDL-------YDTLTITQAVIFCNTKRKVDWLTEKMRGYN--FTVSSMHGDMPQKE 310 (354)
Q Consensus 242 --~~~~~~~~~~~~~~~~~~~~~l~~~-------l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~ 310 (354)
..+.+.+.+.. ....+...+..+ ++...++++||||++++.++.++..|++.+ ..+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 01234443333 222233333222 222356799999999999999999999764 57888999999888
Q ss_pred HHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 311 RDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 311 r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|.+. ++.+|||||+++++|+|+|.. +|| ++ |.++
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~ 346 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDA 346 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCH
Confidence 8654 478999999999999999987 666 44 6553
No 70
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=243.26 Aligned_cols=297 Identities=19% Similarity=0.265 Sum_probs=207.5
Q ss_pred CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
...++.||.+++...+ |++++|.+|||+|||++++..+..++..... .++++++|++-|+.|....+..++.. ..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 3489999999999999 9999999999999999999998888765544 67999999999999999888877755 455
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccC-CCccEEEEecchhhhcc-CcHHHHHHHHhhCCCCCcEE
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT-RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVV 210 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~-~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i 210 (354)
....+|.........+-...+|+|.||+.+.+.+....... +.|.++||||||+.... .+...+..++..-....|++
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE
Confidence 55555544333333455568999999999998887755544 88999999999998765 45666666666665666999
Q ss_pred EEEeeCchhHHHHHHhccCC-------------------------C------------------------------eEEE
Q 018574 211 LISATLPHEILEMTTKFMTD-------------------------P------------------------------VKIL 235 (354)
Q Consensus 211 ~lSaT~~~~~~~~~~~~~~~-------------------------~------------------------------~~~~ 235 (354)
+||||+.............. + ..+.
T Consensus 216 gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccc
Confidence 99999875432221110000 0 0000
Q ss_pred ----------ecCCccccc--------------------------Cce---------eEEEEe-----------------
Q 018574 236 ----------VKRDELTLE--------------------------GIK---------QFFVAV----------------- 253 (354)
Q Consensus 236 ----------~~~~~~~~~--------------------------~~~---------~~~~~~----------------- 253 (354)
........+ +++ .++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 000000000 000 000000
Q ss_pred ---------------ccccchHHHHHHHHh----hCCCCcEEEEcCchhhHHHHHHHHhc---CCCeEEEee--------
Q 018574 254 ---------------EREEWKFDTLCDLYD----TLTITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMH-------- 303 (354)
Q Consensus 254 ---------------~~~~~~~~~l~~~l~----~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~-------- 303 (354)
+....++..+..++. ..++.++|||+.+++.|..+...|.. .+++...+.
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~ 455 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQS 455 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccc
Confidence 000012222222221 22345899999999999999999973 244444443
Q ss_pred cCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 304 GDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 304 ~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+|++.++.+++++|++|+++|||||+++++|+|++.|+.||=||.-.|+
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snp 505 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNP 505 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccH
Confidence 36889999999999999999999999999999999999999999998774
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.5e-31 Score=240.74 Aligned_cols=290 Identities=16% Similarity=0.191 Sum_probs=219.3
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|...+..+++|+ +..+.||+|||.++++|++.....+ +.++|++|++.|+.|.++.+..+...+++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G---~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG---LPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC---CeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 465 89999999999999998 9999999999999999999876544 56999999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcCC-------------------------ccCCCccEEEEecc
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT-------------------------LRTRAIKLLVLDES 184 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~-------------------------~~~~~~~~vvvDE~ 184 (354)
++..+.++.+.. ..+...+++|+++|...| .++++... .....+.+.||||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999987643 334456799999999877 44444321 11256789999999
Q ss_pred hhhhcc-C-----------------cHHHHHHHHhhCCC-----------------------------------------
Q 018574 185 DEMLSR-G-----------------FKDQIYDVYRYLPP----------------------------------------- 205 (354)
Q Consensus 185 h~~~~~-~-----------------~~~~~~~i~~~~~~----------------------------------------- 205 (354)
|.++-. . +......+...+..
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 985311 0 11111111111110
Q ss_pred ---------------C-------------------------------------------------------------CcE
Q 018574 206 ---------------D-------------------------------------------------------------LQV 209 (354)
Q Consensus 206 ---------------~-------------------------------------------------------------~~~ 209 (354)
+ .++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 0 478
Q ss_pred EEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCC--CCcEEEEcCchhhHHH
Q 018574 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDW 287 (354)
Q Consensus 210 i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~lvf~~~~~~~~~ 287 (354)
.+||||.+....++...+..++..+........ ...+.+..... ..+...+.+.+.... +.++||||++++.++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v~~t~-~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEVFLTA-AAKWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEEEeCH-HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 899999988877888888777765554444322 22333333333 337778888876542 5689999999999999
Q ss_pred HHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC---CCc-----EEEecCCCCCC
Q 018574 288 LTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ---QAI-----LFFFLFLFCNV 353 (354)
Q Consensus 288 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~---~~~-----~Vi~~~~p~s~ 353 (354)
++..|.+.|+++..+||+++ +|+..+..|..++..|+|||+++++|+||+ ++. +||++|+|.|.
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 99999999999999999854 555666667767778999999999999999 666 99999999984
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.6e-31 Score=240.35 Aligned_cols=290 Identities=14% Similarity=0.119 Sum_probs=205.5
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.++|+|.+++..+..+++.++.++||+|||+++++|++.....+ ..++|++|+..|+.|+++.+..+...+++++..
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g---~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~ 144 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG---KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSL 144 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC---CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 45677777777666666689999999999999999987665544 359999999999999999999999999999988
Q ss_pred EeCCc---chHHhHHhhcCCCeEEEeCcHHH-HHHHhc------CCccCCCccEEEEecchhhhccC-------------
Q 018574 135 CVGGK---SVGEDIRKLEHGVHVVSGTPGRV-CDMIKR------KTLRTRAIKLLVLDESDEMLSRG------------- 191 (354)
Q Consensus 135 ~~~~~---~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~------~~~~~~~~~~vvvDE~h~~~~~~------------- 191 (354)
+.++. +..........+++|+++||+.| .+++.. .......+.++|+||||+++-..
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~ 224 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRV 224 (762)
T ss_pred EECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCcc
Confidence 77652 22223333445799999999999 454432 23345788999999999974221
Q ss_pred ---cHHHHHHHHhhCCCC--------------------------------------------------------------
Q 018574 192 ---FKDQIYDVYRYLPPD-------------------------------------------------------------- 206 (354)
Q Consensus 192 ---~~~~~~~i~~~~~~~-------------------------------------------------------------- 206 (354)
....+..+.+.+..+
T Consensus 225 ~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~ 304 (762)
T TIGR03714 225 QSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVT 304 (762)
T ss_pred chHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 112222222222100
Q ss_pred -------------------------------------------------------CcEEEEEeeCchhHHHHHHhccCCC
Q 018574 207 -------------------------------------------------------LQVVLISATLPHEILEMTTKFMTDP 231 (354)
Q Consensus 207 -------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~~ 231 (354)
.++.+||+|......++.+.|-.+.
T Consensus 305 ~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v 384 (762)
T TIGR03714 305 NGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSV 384 (762)
T ss_pred CCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCE
Confidence 4678888887666666655443333
Q ss_pred eEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHH
Q 018574 232 VKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQK 309 (354)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 309 (354)
..+.............. ... ....+...+.+.+.. ..+.++||||++++.++.++..|.+.|+++..+||++...
T Consensus 385 ~~IPt~kp~~r~d~~d~--i~~-~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~ 461 (762)
T TIGR03714 385 VKIPTNKPIIRIDYPDK--IYA-TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAK 461 (762)
T ss_pred EEcCCCCCeeeeeCCCe--EEE-CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHH
Confidence 22222221111111111 122 223377777776654 4567999999999999999999999999999999999887
Q ss_pred HHHHHHHHHhCCCCcEEEEccccccCCCcC---------CCcEEEecCCCCC
Q 018574 310 ERDAIMGEFRSGTTRVLITTDVWARGLDVQ---------QAILFFFLFLFCN 352 (354)
Q Consensus 310 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~---------~~~~Vi~~~~p~s 352 (354)
++..+.+.++.| .|+|||+++++|+|++ ++.+|+++++|++
T Consensus 462 E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ 511 (762)
T TIGR03714 462 EAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENS 511 (762)
T ss_pred HHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCc
Confidence 776666655544 7999999999999999 9999999999975
No 73
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=8.4e-31 Score=233.60 Aligned_cols=279 Identities=20% Similarity=0.236 Sum_probs=191.2
Q ss_pred CChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
++++||.++++.+.. ++.+++.+|||+|||.+++..+.... .++|||||+++|+.||++.+.+..... .
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~ 108 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLLLN-D 108 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcCCc-c
Confidence 799999999999998 89999999999999977766655442 229999999999999998887766332 1
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEE
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 210 (354)
.+..+.++..... . ..|.|+|.+.+.+......+..+.+++||||||||+.+..+......+ .....++
T Consensus 109 ~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~----~~~~~~L 177 (442)
T COG1061 109 EIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELL----SAAYPRL 177 (442)
T ss_pred ccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhh----hccccee
Confidence 2223333322111 1 469999999997753223444457999999999999766544443333 2222289
Q ss_pred EEEeeCchhH---HHHHHhccCCCeEEEecCCcc------cccCceeEEEE-----------------------------
Q 018574 211 LISATLPHEI---LEMTTKFMTDPVKILVKRDEL------TLEGIKQFFVA----------------------------- 252 (354)
Q Consensus 211 ~lSaT~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------------------------- 252 (354)
+||||+.... ........+ +..+.....+. .+.........
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 9999975322 111111111 11221111100 00000000000
Q ss_pred ------eccccchHHHHHHHHhhC-CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcE
Q 018574 253 ------VEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRV 325 (354)
Q Consensus 253 ------~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 325 (354)
......+...+..++... .+.+++|||.+.+++..++..+...++ +..+++..+..+|..+++.|+.|..++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~ 335 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKV 335 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 000111334444445444 357999999999999999999998877 889999999999999999999999999
Q ss_pred EEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 326 LITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 326 lv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+++.++.+|+|+|+++++|...-+.|.
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~ 363 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSR 363 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcH
Confidence 9999999999999999999998877663
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=2.4e-30 Score=239.24 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=209.8
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|......+.+|+ +..+.||+|||.++++|++.....+ ..+.|++|+..||.|.++.+..+...+++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G---~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG---KGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC---CCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 466 88888988887777665 9999999999999999998665544 45999999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcCC------ccCCCccEEEEecchhhhccC------------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEMLSRG------------ 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~vvvDE~h~~~~~~------------ 191 (354)
++..+.++.+...+.. ....++|+++||+.+ .+++.... ...+.+.++|+||+|+++-..
T Consensus 149 ~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~ 227 (790)
T PRK09200 149 TVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPR 227 (790)
T ss_pred eEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCc
Confidence 9999999887322222 234589999999988 44444321 345778999999999864111
Q ss_pred ----cHHHHHHHHhhCCCC-------------------------------------------------------------
Q 018574 192 ----FKDQIYDVYRYLPPD------------------------------------------------------------- 206 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~~------------------------------------------------------------- 206 (354)
....+..+...+..+
T Consensus 228 ~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV 307 (790)
T PRK09200 228 VQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIV 307 (790)
T ss_pred cccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 112222222222100
Q ss_pred --------------------------------------------------------CcEEEEEeeCchhHHHHHHhccCC
Q 018574 207 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 230 (354)
Q Consensus 207 --------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~ 230 (354)
.++.+||+|......++.+.|..+
T Consensus 308 ~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~ 387 (790)
T PRK09200 308 YDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNME 387 (790)
T ss_pred ECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCc
Confidence 467788888766555555444433
Q ss_pred CeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCH
Q 018574 231 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (354)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (354)
...+....+. .+...... ..... ..+...+...+.. ..+.++||||++++.++.++..|.+.|+++..+||++..
T Consensus 388 v~~IPt~kp~-~r~d~~~~-i~~~~-~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 388 VVQIPTNRPI-IRIDYPDK-VFVTL-DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred EEECCCCCCc-ccccCCCe-EEcCH-HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 3322211111 11111111 12222 3377777777754 356799999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCc---CCCc-----EEEecCCCCCC
Q 018574 309 KERDAIMGEFRSGTTRVLITTDVWARGLDV---QQAI-----LFFFLFLFCNV 353 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi---~~~~-----~Vi~~~~p~s~ 353 (354)
.++..+.+.+..| .|+|||+++++|+|+ |++. +||++|+|.|.
T Consensus 465 ~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~ 515 (790)
T PRK09200 465 KEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESR 515 (790)
T ss_pred HHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCH
Confidence 7777666665544 799999999999999 6998 99999999884
No 75
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=2.6e-30 Score=229.22 Aligned_cols=294 Identities=21% Similarity=0.305 Sum_probs=216.0
Q ss_pred CCCCHHHHHHH-HHCCCCCChHHHHHhHhhhhcC------CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 38 MGIKDDLLRGI-YQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 38 ~~~~~~~~~~l-~~~~~~~~~~~Q~~~~~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
++....+.+.+ ....| ++|..|++++..+... .+-++++..|||||.+++++++..+.++ .++.+.+||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccH
Confidence 44555655554 56788 9999999999998862 3569999999999999999999888665 458999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcch---HHhHHhhcCC-CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
.-||.|.+..+.++...+++.+..++|.... .+....+.++ .+++|||+.-+ +....+.++++||+||=|+
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEecccc
Confidence 9999999999999999999999999986543 3344455555 99999997544 4466678999999999999
Q ss_pred hhccCcHHHHHHHHhhCCC-CCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHH
Q 018574 187 MLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (354)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~-~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (354)
+--. =+..+..... .+.++.|||||.|....+....-.+. -.++.-..-+..+.............++.+.+
T Consensus 396 FGV~-----QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldv--S~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 396 FGVH-----QRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDV--SIIDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred ccHH-----HHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccc--hhhccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 6222 2222333333 57799999999997766654433332 22222222233344443433332223333333
Q ss_pred HHhhCCCCcEEEEcCchhhH--------HHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Q 018574 266 LYDTLTITQAVIFCNTKRKV--------DWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (354)
Q Consensus 266 ~l~~~~~~~~lvf~~~~~~~--------~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 335 (354)
-+. .+.++.|.|+-+++. ..+++.|+.. +.++..+||.|+++++++++++|++|+.+|||+|.+++.|
T Consensus 469 ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVG 546 (677)
T COG1200 469 EIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVG 546 (677)
T ss_pred HHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEec
Confidence 333 456899999976654 4566666643 5669999999999999999999999999999999999999
Q ss_pred CCcCCCcEEEecCC
Q 018574 336 LDVQQAILFFFLFL 349 (354)
Q Consensus 336 idi~~~~~Vi~~~~ 349 (354)
+|+|+++++|..+.
T Consensus 547 VdVPnATvMVIe~A 560 (677)
T COG1200 547 VDVPNATVMVIENA 560 (677)
T ss_pred ccCCCCeEEEEech
Confidence 99999999988764
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.98 E-value=5.4e-30 Score=233.37 Aligned_cols=290 Identities=17% Similarity=0.203 Sum_probs=212.1
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|......+.+|+ +..++||+|||+++.+|++-....+ ..+.|++|+..|+.|.++.+..+...+++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G---~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC---CCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 465 77888887777666665 9999999999999999986444433 34999999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC------CccCCCccEEEEecchhhhc-cC-----------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLS-RG----------- 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~~-~~----------- 191 (354)
++..+.++.+..+....+ .++|+++||..| .++++.. ...++.+.++|+||+|+++- ..
T Consensus 127 sv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 999999988765544443 489999999999 7777664 34568899999999999743 11
Q ss_pred ----cHHHHHHHHhhCCCC-------------------------------------------------------------
Q 018574 192 ----FKDQIYDVYRYLPPD------------------------------------------------------------- 206 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~~------------------------------------------------------------- 206 (354)
.......+.+.+..+
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 001111111111100
Q ss_pred --------------------------------------------------------CcEEEEEeeCchhHHHHHHhccCC
Q 018574 207 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 230 (354)
Q Consensus 207 --------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~ 230 (354)
.++.+||+|...+..++...|-.+
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 364 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE 364 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC
Confidence 467788888876656655555444
Q ss_pred CeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh--hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCH
Q 018574 231 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (354)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (354)
...+............... ......+...+.+.+. ...+.|+||||++++.++.++..|.+.|+++..+|++ .
T Consensus 365 vv~IPtnkp~~R~d~~d~i---~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q 439 (745)
T TIGR00963 365 VVVVPTNRPVIRKDLSDLV---YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--N 439 (745)
T ss_pred EEEeCCCCCeeeeeCCCeE---EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--h
Confidence 3333322222111111111 1222225555555442 3356799999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCcCC-------CcEEEecCCCCCC
Q 018574 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQ-------AILFFFLFLFCNV 353 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~-------~~~Vi~~~~p~s~ 353 (354)
.+|+..+..|..+...|+|||+++++|+||+. .-+||+++.|.|.
T Consensus 440 ~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ 491 (745)
T TIGR00963 440 HEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESR 491 (745)
T ss_pred HHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcH
Confidence 78888999999999999999999999999998 5599999999884
No 77
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=6.2e-31 Score=216.02 Aligned_cols=311 Identities=15% Similarity=0.251 Sum_probs=234.4
Q ss_pred cCcc--cCCCCHHHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 33 TSFD--AMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 33 ~~~~--~~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
..|+ ++|++.+..+.+++ +...+++|.|..+++..+.|++.++..|||.||+++|-+|++-. ...+|+++|
T Consensus 69 aawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~p 142 (695)
T KOG0353|consen 69 AAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICP 142 (695)
T ss_pred cccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeech
Confidence 3454 58899999999887 67889999999999999999999999999999999999997743 234899999
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhH------HhhcCCCeEEEeCcHHHHHH---Hhc--CCccCCCccE
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI------RKLEHGVHVVSGTPGRVCDM---IKR--KTLRTRAIKL 178 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~iiv~T~~~l~~~---~~~--~~~~~~~~~~ 178 (354)
..+|.+...-.++.++ +....+...++..+.. ..-.....+++.||+++..- +.. ..+....+.+
T Consensus 143 lislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred hHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 9999998888887776 5444444444332211 11123478899999987532 111 3344567899
Q ss_pred EEEecchhhhccC--cHHHH--HHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEec
Q 018574 179 LVLDESDEMLSRG--FKDQI--YDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254 (354)
Q Consensus 179 vvvDE~h~~~~~~--~~~~~--~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (354)
|-+||+|+...|+ |+... ..++++.-++.+++++|||....+....+..+.-.....+.. ..+++++...+..-+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qkp 297 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQKP 297 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeCC
Confidence 9999999987664 44333 344555557889999999998877766655544322222222 244555544433332
Q ss_pred -cccchHHHHHHHHh-hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcccc
Q 018574 255 -REEWKFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVW 332 (354)
Q Consensus 255 -~~~~~~~~l~~~l~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 332 (354)
+.+.-++.+.++++ ...++..||||-+.+.+++++..|+..|+..-.||+.+.+.+|.-+-+.|..|++.|+|+|-++
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 22334555555555 4455678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCCCcEEEecCCCCCCC
Q 018574 333 ARGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 333 ~~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
+.|+|-|+++.|||..+|+|++
T Consensus 378 gmgidkpdvrfvihhsl~ksie 399 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIE 399 (695)
T ss_pred cccCCCCCeeEEEecccchhHH
Confidence 9999999999999999999874
No 78
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=3.1e-30 Score=242.08 Aligned_cols=297 Identities=16% Similarity=0.204 Sum_probs=227.5
Q ss_pred HHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
....+|...+++.|.+++..++.|+++++.+|||.||+++|-+|++-. +.-+|||.|-.+|...+...+...
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~~-- 327 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSKK-- 327 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhhc--
Confidence 344589999999999999999999999999999999999998886643 225899999999998777666333
Q ss_pred CcCeEEEEEeCCcchHHh---HHhhcC---CCeEEEeCcHHHHHHHh--cCCccCCC---ccEEEEecchhhhccC--cH
Q 018574 127 FINIQAHACVGGKSVGED---IRKLEH---GVHVVSGTPGRVCDMIK--RKTLRTRA---IKLLVLDESDEMLSRG--FK 193 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~---~~~~~~---~~~iiv~T~~~l~~~~~--~~~~~~~~---~~~vvvDE~h~~~~~~--~~ 193 (354)
++....+.++....+. .+.+.. ..+|++.||+++..... .....+.. +.++|+||||+...|+ |+
T Consensus 328 --~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFR 405 (941)
T KOG0351|consen 328 --GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFR 405 (941)
T ss_pred --CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccccc
Confidence 4777777777655422 233333 37899999998865322 12222333 7899999999998774 66
Q ss_pred HHHHHHHhhC--CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCC
Q 018574 194 DQIYDVYRYL--PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271 (354)
Q Consensus 194 ~~~~~i~~~~--~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 271 (354)
+....+.... .+..+++.+|||.+..+..-+-..++..... ......+++++...+..-.........+...-...+
T Consensus 406 p~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~ 484 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHP 484 (941)
T ss_pred HHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHHHHhhhcCC
Confidence 5555443222 2346899999999888877666655544333 233334555555444443333434555555666677
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
++.+||||.+++.++.++..|+..++.+..||++|++.+|..+-+.|..++++|+++|=+++.|+|-|+|+.||||.+|+
T Consensus 485 ~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk 564 (941)
T KOG0351|consen 485 DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK 564 (941)
T ss_pred CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018574 352 NVF 354 (354)
Q Consensus 352 s~~ 354 (354)
|++
T Consensus 565 s~E 567 (941)
T KOG0351|consen 565 SFE 567 (941)
T ss_pred hHH
Confidence 975
No 79
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=211.40 Aligned_cols=250 Identities=30% Similarity=0.438 Sum_probs=191.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccCc---CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEE
Q 018574 103 QALILSPTRELATQTEKVILAIGDFI---NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (354)
Q Consensus 103 ~~lil~p~~~l~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~v 179 (354)
.++|+-|+++|++|....++++.... .++...+.+|...+.+...+.++.+|+|+||+++...+....+.+..+.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 39999999999999999777665443 344446778888888888999999999999999999999988889999999
Q ss_pred EEecchhhhccCcHHHHHHHHhhCC------CCCcEEEEEeeCch-hHHHHHHhccCCCeEEEecCCcccccCceeEEEE
Q 018574 180 VLDESDEMLSRGFKDQIYDVYRYLP------PDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (354)
Q Consensus 180 vvDE~h~~~~~~~~~~~~~i~~~~~------~~~~~i~lSaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (354)
++||++.++..++.+.+..+...++ ...|.+..|||+.. ++..+.+..+.-|.-+........++...+....
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~l 447 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKL 447 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceee
Confidence 9999999999999999999888876 34789999999742 3333333444444434333333333222222222
Q ss_pred eccc-cch----------------------------HHHH---------HHHHhhCCCCcEEEEcCchhhHHHHHHHHhc
Q 018574 253 VERE-EWK----------------------------FDTL---------CDLYDTLTITQAVIFCNTKRKVDWLTEKMRG 294 (354)
Q Consensus 253 ~~~~-~~~----------------------------~~~l---------~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~ 294 (354)
+... ... .... ...++.+...++||||.++..++.+.+++++
T Consensus 448 v~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~q 527 (725)
T KOG0349|consen 448 VCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQ 527 (725)
T ss_pred cCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHH
Confidence 1111 001 1111 1123344557899999999999999999987
Q ss_pred C---CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCC
Q 018574 295 Y---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 295 ~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
. .+.|+++||+..+.+|.+-++.|+.+..+.||||+++.+|+||..+..+|++-+|.+
T Consensus 528 kgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~ 588 (725)
T KOG0349|consen 528 KGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDD 588 (725)
T ss_pred cCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcc
Confidence 6 358999999999999999999999999999999999999999999999999999975
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=8.4e-29 Score=226.21 Aligned_cols=290 Identities=16% Similarity=0.253 Sum_probs=211.3
Q ss_pred CCCCCChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhcccc-------CCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 51 YGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
++|..++..|..+++.+.. ..+.+|+||||+|||-.+++.++..+.. .+.+.+++||+|+++|+..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 6777899999999998776 6799999999999999999999988764 2345689999999999999999998
Q ss_pred HhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC---CccCCCccEEEEecchhhhccCcHHHHHHH
Q 018574 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (354)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i 199 (354)
+-....|+.+..++|+....... ...++|+|+||+++--.-+.. .-..+.+++||+||+|.+-+. -+..+..+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 88888899999999998765544 224899999999985433321 223467899999999998654 23444444
Q ss_pred Hhh-------CCCCCcEEEEEeeCchhHHHHHHhccCC-CeEEEecCCcccccCceeEEEEecccc----------chHH
Q 018574 200 YRY-------LPPDLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVEREE----------WKFD 261 (354)
Q Consensus 200 ~~~-------~~~~~~~i~lSaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 261 (354)
..+ .....+++++|||+|+- .+....+.-+ +..+........+-.+.+.+....... ...+
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 332 23567899999999874 3333332222 233333333333334444444443331 1123
Q ss_pred HHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC----C-------------------CeEEEeecCCCHHHHHHHHHHH
Q 018574 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY----N-------------------FTVSSMHGDMPQKERDAIMGEF 318 (354)
Q Consensus 262 ~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f 318 (354)
.+.+.++ .+.+++|||.++..+.+.|+.|.+. | ....+.|+++...+|..+.+.|
T Consensus 341 kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 341 KVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 3333333 3468999999999999999888643 1 2256789999999999999999
Q ss_pred hCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 319 RSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 319 ~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
.+|.++||+||..++.|+|+|+ .+||.-+
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA-~aViIKG 447 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPA-YAVIIKG 447 (1230)
T ss_pred hcCCceEEEecceeeeccCCcc-eEEEecC
Confidence 9999999999999999999994 5555544
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.7e-29 Score=210.19 Aligned_cols=295 Identities=16% Similarity=0.231 Sum_probs=207.5
Q ss_pred HHHHHHHH-CCCCC-ChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHH
Q 018574 43 DLLRGIYQ-YGFEK-PSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (354)
Q Consensus 43 ~~~~~l~~-~~~~~-~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (354)
.+.+.|++ +|+.. -++.|..++..+.. .+++.+++|||+||+++|-+|++-. . + -++|+.|..+|.....+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~--g-ITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---G--G-ITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---C--C-eEEEehHHHHHHHHHHH
Confidence 45667776 67654 47899999998877 4799999999999999999997744 1 2 48999999999998888
Q ss_pred HHHHhccCcCeEEEEEeCCcchHHh------HHhhcCCCeEEEeCcHHHHHHH----hcCCccCCCccEEEEecchhhhc
Q 018574 120 VILAIGDFINIQAHACVGGKSVGED------IRKLEHGVHVVSGTPGRVCDMI----KRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~iiv~T~~~l~~~~----~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
.+.++. +.+..+....+..+. +...+....+++.||+..-.-. .+....-..+.++|+||+|....
T Consensus 80 HL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 80 HLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 887654 333333332222221 2223345788999998653222 12222335679999999999977
Q ss_pred cC--cHHHHHHH---HhhCCCCCcEEEEEeeCchhHHHHHHhc--cCCCeEEEecCCcccccCceeEEEEecccc---ch
Q 018574 190 RG--FKDQIYDV---YRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDELTLEGIKQFFVAVEREE---WK 259 (354)
Q Consensus 190 ~~--~~~~~~~i---~~~~~~~~~~i~lSaT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 259 (354)
|+ |++....+ .+.+ ++...+.+|||.++.+.+.+-.. +..|..+...+.. +.++ ++.....+ +-
T Consensus 156 WGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~NL---FYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDNL---FYDNHMKSFITDC 229 (641)
T ss_pred hccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhhh---hHHHHHHHHhhhH
Confidence 65 55544443 3333 57789999999998887755433 3455544322221 1111 00000000 01
Q ss_pred HHHHHHHHhhCC-------------CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEE
Q 018574 260 FDTLCDLYDTLT-------------ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVL 326 (354)
Q Consensus 260 ~~~l~~~l~~~~-------------~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 326 (354)
...|.++..... .+-.||||.+++++++++-.|...|+...-||+++...+|.++.++|.+++..|+
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI 309 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVI 309 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEE
Confidence 222222222111 1348999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCcCCCcEEEecCCCCCC
Q 018574 327 ITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 327 v~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
++|..+++|+|-|+++.|||++.|.|+
T Consensus 310 ~AT~SFGMGVDKp~VRFViHW~~~qn~ 336 (641)
T KOG0352|consen 310 AATVSFGMGVDKPDVRFVIHWSPSQNL 336 (641)
T ss_pred EEEeccccccCCcceeEEEecCchhhh
Confidence 999999999999999999999999885
No 82
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1e-27 Score=224.28 Aligned_cols=292 Identities=20% Similarity=0.249 Sum_probs=226.9
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHhHhhhhc----C--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 38 MGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIK----G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 38 ~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~----~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
++.+......+.. ++| ..|+.|..+++.+.+ + -+-+|+|..|.|||.+++-++......+ +++.++|||
T Consensus 577 f~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPT 652 (1139)
T COG1197 577 FPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPT 652 (1139)
T ss_pred CCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEccc
Confidence 3445555555555 677 889999999999886 3 3679999999999999999988877655 569999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhcCC-CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
.-|++|.++.++.-...+++++..+..=....+. ...+..| .||+|||+. +-...+.+.+++++||||-|+
T Consensus 653 TlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqR 727 (1139)
T COG1197 653 TLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQR 727 (1139)
T ss_pred HHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeEEEechhh
Confidence 9999999999999999999999887654443333 3344444 899999963 334567788999999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHH
Q 018574 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (354)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (354)
+ +-.-++-++.+..+.-++-|||||.|....+.....++...+...+ ..+..+..++....+..-+..++.++
T Consensus 728 F-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R~pV~T~V~~~d~~~ireAI~REl 800 (1139)
T COG1197 728 F-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDRLPVKTFVSEYDDLLIREAILREL 800 (1139)
T ss_pred c-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCCcceEEEEecCChHHHHHHHHHHH
Confidence 5 3334455555667788999999999999988888777764443222 23333444444444433233333333
Q ss_pred HhhCCCCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEE
Q 018574 267 YDTLTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILF 344 (354)
Q Consensus 267 l~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~V 344 (354)
.+ +|++....|.++..+++++.|+++ ..++.+.||-|+..+-++++.+|-+|+++|||||.+++.|+|+|+++.+
T Consensus 801 ~R---gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 801 LR---GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred hc---CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceE
Confidence 33 589999999999999999999987 5678999999999999999999999999999999999999999999998
Q ss_pred EecC
Q 018574 345 FFLF 348 (354)
Q Consensus 345 i~~~ 348 (354)
|.-+
T Consensus 878 IIe~ 881 (1139)
T COG1197 878 IIER 881 (1139)
T ss_pred EEec
Confidence 8643
No 83
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=8.2e-28 Score=227.86 Aligned_cols=294 Identities=16% Similarity=0.129 Sum_probs=191.0
Q ss_pred CChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
.|.|||.+++..++. ..++++...+|.|||..+.+.+...+..+ ...++|||||. +|..||..++.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 699999999988765 35899999999999988877666655544 34469999996 89999999986533 2333
Q ss_pred EEEeCCcchHH--hHHhhcCCCeEEEeCcHHHHHHH-hcCCccCCCccEEEEecchhhhcc--CcHHHHHHHHhhCCCCC
Q 018574 133 HACVGGKSVGE--DIRKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 133 ~~~~~~~~~~~--~~~~~~~~~~iiv~T~~~l~~~~-~~~~~~~~~~~~vvvDE~h~~~~~--~~~~~~~~i~~~~~~~~ 207 (354)
..+.++..... .........+++|+|.+.+...- ....+....+++||+||||++... ........+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 33332211100 00011124689999998776421 112233457899999999998621 11112222222222345
Q ss_pred cEEEEEeeCchh-HH------------------HHH-------------H-----------------hccCCCe------
Q 018574 208 QVVLISATLPHE-IL------------------EMT-------------T-----------------KFMTDPV------ 232 (354)
Q Consensus 208 ~~i~lSaT~~~~-~~------------------~~~-------------~-----------------~~~~~~~------ 232 (354)
.++++||||... .. .+. . .++.+..
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 689999997421 00 000 0 0000000
Q ss_pred ---------------------------EEEecCCccc----ccCceeEE-EE----------------------------
Q 018574 233 ---------------------------KILVKRDELT----LEGIKQFF-VA---------------------------- 252 (354)
Q Consensus 233 ---------------------------~~~~~~~~~~----~~~~~~~~-~~---------------------------- 252 (354)
.+.+...... +....+.+ ..
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 0000000000 00000000 00
Q ss_pred -------eccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHH-hcCCCeEEEeecCCCHHHHHHHHHHHhCC--C
Q 018574 253 -------VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM-RGYNFTVSSMHGDMPQKERDAIMGEFRSG--T 322 (354)
Q Consensus 253 -------~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~ 322 (354)
......|.+.+..+++.....|+||||++++.+..+++.| ...|+++..+||+++..+|.++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 0011225566777777777789999999999999999999 46699999999999999999999999974 5
Q ss_pred CcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 323 TRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 323 ~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+|||||.++++|+|++.+++||+||+|+|+
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP 577 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNP 577 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCH
Confidence 8999999999999999999999999999997
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=3.8e-27 Score=220.22 Aligned_cols=277 Identities=21% Similarity=0.243 Sum_probs=186.9
Q ss_pred CChHHHHHhHhhhhcC---CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeE
Q 018574 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (354)
.++++|.++++.+.++ +++++.++||+|||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 6899999999999874 789999999999999998887776654 3469999999999999999998753 467
Q ss_pred EEEEeCCcchHHhH---Hhhc-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-----c-HHHHHHHHh
Q 018574 132 AHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----F-KDQIYDVYR 201 (354)
Q Consensus 132 ~~~~~~~~~~~~~~---~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-----~-~~~~~~i~~ 201 (354)
+..++++.+..+.. .... ..++|+|+|++.+. .++.++++||+||+|.....+ + .+.+.. ..
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~-~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV-VR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH-HH
Confidence 88888886654433 2232 34799999997763 456789999999999764322 1 123322 22
Q ss_pred hCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCc--ccccCceeEEEEecc------ccchHHHHHHHHh-hC-C
Q 018574 202 YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE--LTLEGIKQFFVAVER------EEWKFDTLCDLYD-TL-T 271 (354)
Q Consensus 202 ~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~l~~~l~-~~-~ 271 (354)
....+.+++++|||++.+........ ....+...... ...+.+ ....... ...-...+.+.++ .. .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 33467899999999887655544321 11111111111 111111 1111100 0001122222222 22 2
Q ss_pred CCcEEEEcCchh------------------------------------------------------------hHHHHHHH
Q 018574 272 ITQAVIFCNTKR------------------------------------------------------------KVDWLTEK 291 (354)
Q Consensus 272 ~~~~lvf~~~~~------------------------------------------------------------~~~~l~~~ 291 (354)
++++|||+|.+. -++++++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 346777766421 34577777
Q ss_pred HhcC--CCeEEEeecCCC--HHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 292 MRGY--NFTVSSMHGDMP--QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 292 l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
|++. +.++..+|+++. .+++++++++|++|+.+|||+|+++++|+|+|++++|+.+|.
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~a 507 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDA 507 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcC
Confidence 7765 678889999875 467889999999999999999999999999999999965544
No 85
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=5.6e-27 Score=225.44 Aligned_cols=272 Identities=18% Similarity=0.270 Sum_probs=184.1
Q ss_pred ChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC----HHHHHHHHHHHHH-hccCcCe
Q 018574 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT----RELATQTEKVILA-IGDFINI 130 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~----~~l~~q~~~~~~~-~~~~~~~ 130 (354)
.+.+-.+++..+..++.+++.|+||||||+.. .-++.....+.. ..+++.-|. ++++.++++++.. ++...|+
T Consensus 75 i~~~r~~Il~ai~~~~VviI~GeTGSGKTTql-Pq~lle~g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 75 VSQKKQDILEAIRDHQVVIVAGETGSGKTTQL-PKICLELGRGVK-GLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHcCCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 35555677778778888999999999999843 223333322221 233444464 5888888888764 4544444
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh-hhccCcHH-HHHHHHhhCCCCCc
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQ 208 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~-~~~~~~~~-~~~~i~~~~~~~~~ 208 (354)
.+. ... .....+.|+++|++.|++.+..... +.++++||+||+|. +++.++.. .+..++.. .++.|
T Consensus 153 ~vr-------f~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlK 220 (1294)
T PRK11131 153 KVR-------FND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLK 220 (1294)
T ss_pred eec-------Ccc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCce
Confidence 321 111 1234689999999999998876544 78999999999994 66666543 23344332 24689
Q ss_pred EEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccc--hHHHHHHHH------hhCCCCcEEEEcC
Q 018574 209 VVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW--KFDTLCDLY------DTLTITQAVIFCN 280 (354)
Q Consensus 209 ~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l------~~~~~~~~lvf~~ 280 (354)
++++|||++.+ .+...+...+. +.+.... ..+...|........ +.+.+..++ .....+++|||++
T Consensus 221 vILmSATid~e--~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDPE--RFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCHH--HHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 99999999753 44444444443 3333221 124445544432110 122222221 2234578999999
Q ss_pred chhhHHHHHHHHhcCCCe---EEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 281 TKRKVDWLTEKMRGYNFT---VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 281 ~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
+.++++.+++.|++.+.. +..+||+++.++|..+++. .|..+|||||+++++|+|+|++++||++|+
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl 364 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGT 364 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCC
Confidence 999999999999987654 6789999999999999875 478899999999999999999999999974
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=1.6e-26 Score=217.80 Aligned_cols=296 Identities=16% Similarity=0.177 Sum_probs=188.9
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCc--CeE
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NIQ 131 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~--~~~ 131 (354)
..|+|+|..+......+..+++.+|||+|||.+++.++...+..+ ...+++|..||.++++++++++.++.... ...
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-LADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 489999998865434466789999999999999888776544333 34569999999999999999987643211 234
Q ss_pred EEEEeCCcchHHhH---------------------Hhhc------CCCeEEEeCcHHHHHHHhc-CCccCC----CccEE
Q 018574 132 AHACVGGKSVGEDI---------------------RKLE------HGVHVVSGTPGRVCDMIKR-KTLRTR----AIKLL 179 (354)
Q Consensus 132 ~~~~~~~~~~~~~~---------------------~~~~------~~~~iiv~T~~~l~~~~~~-~~~~~~----~~~~v 179 (354)
+...+|........ .-+. --.+|+|+|..+++..... .....+ .-++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 55566554321110 0011 1168999999888743322 111112 23589
Q ss_pred EEecchhhhccCcHHHHHHHHhhC-CCCCcEEEEEeeCchhHHHHHHhccCCC--e------EEEe--cC---Cccccc-
Q 018574 180 VLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDP--V------KILV--KR---DELTLE- 244 (354)
Q Consensus 180 vvDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~lSaT~~~~~~~~~~~~~~~~--~------~~~~--~~---~~~~~~- 244 (354)
||||+|.+... ....+..+++.+ ....++++||||+|......+...+... . .... .. ......
T Consensus 444 IiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 444 IVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred EEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 99999997332 334455555543 2356799999999987765443322110 0 0000 00 000000
Q ss_pred -----CceeEE--EEe--ccccchHHHHHHHHhh-CCCCcEEEEcCchhhHHHHHHHHhcCC---CeEEEeecCCCHHHH
Q 018574 245 -----GIKQFF--VAV--EREEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYN---FTVSSMHGDMPQKER 311 (354)
Q Consensus 245 -----~~~~~~--~~~--~~~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r 311 (354)
.....+ ... .........+..+++. ..+++++||||+++.++++++.|++.+ ..+..+|+.++..+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 001111 111 1111123344444443 345689999999999999999998764 579999999999988
Q ss_pred ----HHHHHHH-hCCC---CcEEEEccccccCCCcCCCcEEEecCCCCC
Q 018574 312 ----DAIMGEF-RSGT---TRVLITTDVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 312 ----~~~~~~f-~~g~---~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
.++++.| ++|+ ..|||+|+++++|+|+ +++++|....|.+
T Consensus 603 ~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaPid 650 (878)
T PRK09694 603 REKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCPVD 650 (878)
T ss_pred HHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCCHH
Confidence 4567788 5665 4799999999999999 5899999888854
No 87
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=2.4e-27 Score=186.60 Aligned_cols=164 Identities=27% Similarity=0.475 Sum_probs=140.6
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEe
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (354)
||+|.++++.+.+++++++.+|||+|||++++.+++..+... ...++++++|+++|+.|..+.+..+....+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988776 4457999999999999999999999988788888888
Q ss_pred CCcchH-HhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC--CCCcEEEEE
Q 018574 137 GGKSVG-EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLIS 213 (354)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~lS 213 (354)
++.... .....+..+++|+|+||+++.+.+........++++||+||+|.+....+...+..+...+. .+.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 887755 33344456799999999999999887555667799999999999988777888888888873 358999999
Q ss_pred eeCchhHH
Q 018574 214 ATLPHEIL 221 (354)
Q Consensus 214 aT~~~~~~ 221 (354)
||++..+.
T Consensus 160 AT~~~~~~ 167 (169)
T PF00270_consen 160 ATLPSNVE 167 (169)
T ss_dssp SSSTHHHH
T ss_pred eCCChhHh
Confidence 99985543
No 88
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=3.8e-26 Score=221.19 Aligned_cols=292 Identities=17% Similarity=0.223 Sum_probs=181.3
Q ss_pred CChHHHHHhHhhhhc-----CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 55 KPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~-----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
.+++||.+++..+.+ .+++++.+|||+|||.+++..+.. +.......++|||+|+.+|+.|+.+.+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 589999999987753 367899999999999876554433 33333345799999999999999999988642211
Q ss_pred eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-----CccCCCccEEEEecchhhhcc--------------
Q 018574 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSR-------------- 190 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~vvvDE~h~~~~~-------------- 190 (354)
.....+.+....... .......|+|+|.+++...+... ......+++||+||||+....
T Consensus 492 ~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 111111111111111 11234789999999987754321 234578899999999995310
Q ss_pred -CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHh--------------ccC---CCeEEEec--CCcccc--c----
Q 018574 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK--------------FMT---DPVKILVK--RDELTL--E---- 244 (354)
Q Consensus 191 -~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~--------------~~~---~~~~~~~~--~~~~~~--~---- 244 (354)
++...+..++..+ +...++|||||.......... ++- .|..+... ...... .
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 1135566666654 356899999996543322211 111 01111110 000000 0
Q ss_pred Ccee---EE--EEecccc-c-------------hH----HHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC------
Q 018574 245 GIKQ---FF--VAVEREE-W-------------KF----DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------ 295 (354)
Q Consensus 245 ~~~~---~~--~~~~~~~-~-------------~~----~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~------ 295 (354)
.... .+ ...+... . .. ..+.+.+.....+|+||||.++++|+.+.+.|++.
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 0000 00 0000000 0 00 11222222233479999999999999999887653
Q ss_pred C---CeEEEeecCCCHHHHHHHHHHHhCCCC-cEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 296 N---FTVSSMHGDMPQKERDAIMGEFRSGTT-RVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 296 ~---~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+ ..+..++|+.+ ++.+++++|++++. .|+|+++++.+|+|+|.+.+||++..|.|.
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~ 787 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSR 787 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCH
Confidence 1 24566888864 56789999999876 689999999999999999999999999874
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.1e-26 Score=213.60 Aligned_cols=302 Identities=16% Similarity=0.255 Sum_probs=224.6
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCC--------ceeEEEEc
Q 018574 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSR--------EVQALILS 108 (354)
Q Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~lil~ 108 (354)
..++.+-..++ .|...+.+.|.++....+.+ .+++++||||+|||..+++-+++.+..+.+ ..+++|++
T Consensus 294 selP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 294 SELPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIA 371 (1674)
T ss_pred cCCcchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEe
Confidence 34455555555 45567999999999998885 689999999999999999999998866543 34799999
Q ss_pred CCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCC--ccCCCccEEEEecchh
Q 018574 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDE 186 (354)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vvvDE~h~ 186 (354)
|.++|++.|...+.+....+++++...+|+....... ..+++|+|+||+++--.-+... --.+.++++|+||.|.
T Consensus 372 PmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred eHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhh
Confidence 9999999999999998899999999999987654432 2358999999999843333211 1124578999999999
Q ss_pred hhccCcHHHHHHHHh----hC---CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch
Q 018574 187 MLSRGFKDQIYDVYR----YL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259 (354)
Q Consensus 187 ~~~~~~~~~~~~i~~----~~---~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
+-+. -+..+..+.. .. ....+++++|||+|+. .....-+.-++..+........+-.+.+.+..+.....-
T Consensus 449 LhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 449 LHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred cccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 8443 1233332222 11 2467899999999885 222222233333444444455555667777766554321
Q ss_pred -------HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhc-------------------------------------C
Q 018574 260 -------FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG-------------------------------------Y 295 (354)
Q Consensus 260 -------~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~-------------------------------------~ 295 (354)
.....++++....+++|||+.+++++.+.|+.++. +
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 14556778888889999999999999988888872 1
Q ss_pred CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 296 NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 296 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
.+.+.++|++|+..+|..+...|..|+++|+++|..+++|+|+|.-+++|-
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik 657 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK 657 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec
Confidence 245889999999999999999999999999999999999999997776663
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=4.4e-26 Score=205.77 Aligned_cols=260 Identities=19% Similarity=0.220 Sum_probs=169.1
Q ss_pred EEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhc-
Q 018574 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLE- 149 (354)
Q Consensus 74 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~- 149 (354)
++.+|||+|||.+|+..+...+.. +.++||++|+.+|+.|+.+.+++.. +..+..++++.+..+. +..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999998776666543 3469999999999999999998754 3567777777654433 23333
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-----c-HHHHHHHHhhCCCCCcEEEEEeeCchhHHHH
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----F-KDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-----~-~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~ 223 (354)
...+|+|+|+..+. .++.++++|||||.|.....+ + .+.+..+.... .+.+++++|||++.+....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSATPSLESYHN 146 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCCCCHHHHHH
Confidence 34799999998663 346789999999999875322 1 22333333333 5788999999988765544
Q ss_pred HHhccCCCeEEEecCCcccccCceeEEEEecccc---chHHHHHHHH-hhC-CCCcEEEEcCchhh--------------
Q 018574 224 TTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE---WKFDTLCDLY-DTL-TITQAVIFCNTKRK-------------- 284 (354)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l-~~~-~~~~~lvf~~~~~~-------------- 284 (354)
.... ....+...............+....... .-...+.+.+ +.. .++++|||+|.+..
T Consensus 147 ~~~g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~ 224 (505)
T TIGR00595 147 AKQK--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILC 224 (505)
T ss_pred HhcC--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccC
Confidence 4321 1111111111111111111111111111 1112222222 222 23578998665443
Q ss_pred ----------------------------------------------HHHHHHHHhcC--CCeEEEeecCCCHHHH--HHH
Q 018574 285 ----------------------------------------------VDWLTEKMRGY--NFTVSSMHGDMPQKER--DAI 314 (354)
Q Consensus 285 ----------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~~ 314 (354)
.+++.+.|++. +.++..+|+++....+ ..+
T Consensus 225 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~ 304 (505)
T TIGR00595 225 CPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEAL 304 (505)
T ss_pred CCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHH
Confidence 47778888776 6788999999876555 889
Q ss_pred HHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 315 MGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 315 ~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
++.|++|+.+|||+|+++++|+|+|++++|+.+|.
T Consensus 305 l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~a 339 (505)
T TIGR00595 305 LNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDA 339 (505)
T ss_pred HHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcC
Confidence 99999999999999999999999999999864443
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.1e-25 Score=208.01 Aligned_cols=277 Identities=18% Similarity=0.234 Sum_probs=202.1
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|.-..-.+.+| -+..+.||+|||+++.+|++.....+. .+-|++|+..||.|.++.+..+...+++
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 455 6677676555444444 588999999999999999964433333 3779999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcCC------ccCCCccEEEEecchhhhccC------------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEMLSRG------------ 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~~~~~vvvDE~h~~~~~~------------ 191 (354)
++..+.++.+..+....+ .++|+++|+..| .++++... ...+.+.++|+||+|+++-..
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 999999988777665554 489999999999 77777643 235778999999999964111
Q ss_pred ----cHHHHHHHHhhCCCC-------------------------------------------------------------
Q 018574 192 ----FKDQIYDVYRYLPPD------------------------------------------------------------- 206 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~~------------------------------------------------------------- 206 (354)
....+..+...+..+
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 122233333333110
Q ss_pred --------------------------------------------------------CcEEEEEeeCchhHHHHHHhccCC
Q 018574 207 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 230 (354)
Q Consensus 207 --------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~ 230 (354)
.++.+||+|...+..++...|-.+
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~ 389 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLD 389 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCC
Confidence 467788888876666666555554
Q ss_pred CeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCH
Q 018574 231 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (354)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (354)
...+....+....+... ........+...+.+.+.. ..+.|+||||+|++.++.++..|.+.++++..+|+. .
T Consensus 390 vv~IPtnkp~~r~d~~d---~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q 464 (830)
T PRK12904 390 VVVIPTNRPMIRIDHPD---LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--N 464 (830)
T ss_pred EEEcCCCCCeeeeeCCC---eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--h
Confidence 43333222211111111 1122233377777777754 566799999999999999999999999999999996 6
Q ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
.+|+..+..|..++..|+|||+++++|+||+=
T Consensus 465 ~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~L 496 (830)
T PRK12904 465 HEREAEIIAQAGRPGAVTIATNMAGRGTDIKL 496 (830)
T ss_pred HHHHHHHHHhcCCCceEEEecccccCCcCccC
Confidence 78899999999999999999999999999973
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=6.3e-26 Score=209.86 Aligned_cols=273 Identities=17% Similarity=0.226 Sum_probs=191.2
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEe
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (354)
++|-.+++-.+.-.+.-+..++||+|||+++.+|++..+..+. .++|++|+..|+.|.++.+..+...+++++..+.
T Consensus 82 ~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~ 158 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIY 158 (896)
T ss_pred CcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEe
Confidence 3444444444444566789999999999999999997766543 4899999999999999999999999999999999
Q ss_pred CCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC-CccC-----CCccEEEEecchhhhccC----------------cH
Q 018574 137 GGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEMLSRG----------------FK 193 (354)
Q Consensus 137 ~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~-~~~~-----~~~~~vvvDE~h~~~~~~----------------~~ 193 (354)
++.+.......+ .++|+++||+.| .++++.. .+.. ..+.++|+||+|+++-.. ..
T Consensus 159 gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y 236 (896)
T PRK13104 159 PDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELY 236 (896)
T ss_pred CCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHH
Confidence 998776654444 589999999999 8887765 2323 578999999999864111 11
Q ss_pred HHHHHHHhhCCC--------------C-----------------------------------------------------
Q 018574 194 DQIYDVYRYLPP--------------D----------------------------------------------------- 206 (354)
Q Consensus 194 ~~~~~i~~~~~~--------------~----------------------------------------------------- 206 (354)
..+..+...+.. .
T Consensus 237 ~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~ 316 (896)
T PRK13104 237 IKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFH 316 (896)
T ss_pred HHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhc
Confidence 111111111100 0
Q ss_pred ---------------------------------------------------------------CcEEEEEeeCchhHHHH
Q 018574 207 ---------------------------------------------------------------LQVVLISATLPHEILEM 223 (354)
Q Consensus 207 ---------------------------------------------------------------~~~i~lSaT~~~~~~~~ 223 (354)
.++-+||+|...+..++
T Consensus 317 ~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef 396 (896)
T PRK13104 317 RDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEF 396 (896)
T ss_pred CCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHH
Confidence 34556666665555555
Q ss_pred HHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh--hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEE
Q 018574 224 TTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSS 301 (354)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~ 301 (354)
...|-.+...+.........+.-...| .....+...+.+.+. ...+.|+||||+|++.++.++..|.+.|+++.+
T Consensus 397 ~~iY~l~Vv~IPtnkp~~R~d~~d~v~---~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~v 473 (896)
T PRK13104 397 QQIYNLEVVVIPTNRSMIRKDEADLVY---LTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQV 473 (896)
T ss_pred HHHhCCCEEECCCCCCcceecCCCeEE---cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEe
Confidence 444444333222222211111111111 112225555555443 335679999999999999999999999999999
Q ss_pred eecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC
Q 018574 302 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 302 ~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
+|+.+...++..+.+.|+.| .|+|||+++++|+||.
T Consensus 474 Lnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~ 509 (896)
T PRK13104 474 LNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIV 509 (896)
T ss_pred ecCCCChHHHHHHHhCCCCC--cEEEeccCccCCccee
Confidence 99999999999999999998 4999999999999986
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.8e-25 Score=180.33 Aligned_cols=269 Identities=19% Similarity=0.197 Sum_probs=190.9
Q ss_pred CChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
+++++|+.+-+.+.+ .++.+++|-||+|||.+....+.+.+.++. ++.+.+|+...+...+.++++... +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~---~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG---RVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC---eEEEecCcccchHHHHHHHHHhhc--cC
Confidence 789999988776654 689999999999999988888777776554 599999999999999999987553 35
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEE
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 210 (354)
.+..++|+++... . .+++|+|...|+++.. .|+++|+||+|.+.-..-...-..+-+........+
T Consensus 172 ~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYF------R-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhc------c-ccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 5667777765432 1 6788888888877665 689999999998753322222233333344566789
Q ss_pred EEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchH------HHHHHHHhhC--CCCcEEEEcCch
Q 018574 211 LISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF------DTLCDLYDTL--TITQAVIFCNTK 282 (354)
Q Consensus 211 ~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~~--~~~~~lvf~~~~ 282 (354)
.+|||++..+..-+...- ...+......-..+-....+....+...++ ..+..+++.. .+.+++||++++
T Consensus 238 ylTATp~k~l~r~~~~g~--~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 238 YLTATPTKKLERKILKGN--LRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EEecCChHHHHHHhhhCC--eeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 999999987666443321 112222222222233333344433333222 2455555533 346899999999
Q ss_pred hhHHHHHHHHh-cCCC-eEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 283 RKVDWLTEKMR-GYNF-TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 283 ~~~~~l~~~l~-~~~~-~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
+.++++++.|+ ..+. ....+|+. +..|.+.+++|++|+.++||+|.++++|+.+|++++.+.
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL 379 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe
Confidence 99999999994 4433 44778886 568889999999999999999999999999999998765
No 94
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=2e-24 Score=208.70 Aligned_cols=276 Identities=18% Similarity=0.204 Sum_probs=183.1
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH-hccCcCeEEEEE
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHAC 135 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~ 135 (354)
+.+..+++..+..++.++|.|+||||||+..-..++. ...+. ...+++.-|.+--+..++..+.. ++...+-.+..-
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle-~~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLE-LGRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH-cCCCC-CceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 3344577777777889999999999999854333332 22222 23456666888767766666544 333333333322
Q ss_pred eCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh-hhccCcHHH-HHHHHhhCCCCCcEEEEE
Q 018574 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKDQ-IYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~i~lS 213 (354)
....+ . ....+.|.++|++.|++.+.... .+.++++||+||+|. .++.++.-. +..++... ++.++++||
T Consensus 147 vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmS 218 (1283)
T TIGR01967 147 VRFHD---Q---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITS 218 (1283)
T ss_pred EcCCc---c---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEe
Confidence 11111 1 23457899999999998877644 367899999999994 666665543 55554443 578999999
Q ss_pred eeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccc-----cchHHH----HHHHHhhCCCCcEEEEcCchhh
Q 018574 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE-----EWKFDT----LCDLYDTLTITQAVIFCNTKRK 284 (354)
Q Consensus 214 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----l~~~l~~~~~~~~lvf~~~~~~ 284 (354)
||+.. ..+...+...+. +.+..... .+..+|...... ...... +..++.. ..+.+|||+++.++
T Consensus 219 ATld~--~~fa~~F~~apv-I~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~E 291 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPI-IEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGERE 291 (1283)
T ss_pred CCcCH--HHHHHHhcCCCE-EEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHH
Confidence 99975 344444444443 33332211 223344333211 112222 2223322 45889999999999
Q ss_pred HHHHHHHHhcCC---CeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 285 VDWLTEKMRGYN---FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 285 ~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
++.+++.|++.+ ..+..+||.++.++|.++++.+ +..+|+|||+++++|+|+|++++||++|+++
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r 359 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTAR 359 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcc
Confidence 999999998764 4588899999999999887653 3479999999999999999999999999876
No 95
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.7e-25 Score=200.92 Aligned_cols=288 Identities=18% Similarity=0.266 Sum_probs=203.6
Q ss_pred HHHHHHHC-CCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 44 LLRGIYQY-GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 44 ~~~~l~~~-~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
+.+.+++. |+ .||..|+-....+..|+.+.+.||||.|||+.-++..+..... +.++++++||..|+.|.++.+.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k---gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK---GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc---CCeEEEEecCHHHHHHHHHHHH
Confidence 34445553 55 9999999999999999999999999999997655554444333 3569999999999999999999
Q ss_pred HhccCcC-eEEEE-EeCCcch---HHhHHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-----
Q 018574 123 AIGDFIN-IQAHA-CVGGKSV---GEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----- 191 (354)
Q Consensus 123 ~~~~~~~-~~~~~-~~~~~~~---~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~----- 191 (354)
++....+ ..+.. .|+.-.. .+...++.+ +.+|+|+|.+.|...... +...+|++|++|++|.++..+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHH
Confidence 9886655 33333 3443222 223334444 589999999888766553 223578999999999875433
Q ss_pred ------cHH-----------------------HHHHHHhh--------CCCCCcEEEEEeeCchhH--HHHHHhccCCCe
Q 018574 192 ------FKD-----------------------QIYDVYRY--------LPPDLQVVLISATLPHEI--LEMTTKFMTDPV 232 (354)
Q Consensus 192 ------~~~-----------------------~~~~i~~~--------~~~~~~~i~lSaT~~~~~--~~~~~~~~~~~~ 232 (354)
|.. .+.++.+. -.+..++++.|||..+.- ..+...+++
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg--- 301 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG--- 301 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---
Confidence 111 11111111 113468999999985532 223333332
Q ss_pred EEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCc---hhhHHHHHHHHhcCCCeEEEeecCCCHH
Q 018574 233 KILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT---KRKVDWLTEKMRGYNFTVSSMHGDMPQK 309 (354)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 309 (354)
...........++...|... .....+..+++.... -.|||++. ++.++++++.|+..|+++..+|++
T Consensus 302 -FevG~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~---- 371 (1187)
T COG1110 302 -FEVGSGGEGLRNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE---- 371 (1187)
T ss_pred -CccCccchhhhheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc----
Confidence 22233334455566555554 255666666666653 68999999 999999999999999999999985
Q ss_pred HHHHHHHHHhCCCCcEEEEcc----ccccCCCcC-CCcEEEecCCCC
Q 018574 310 ERDAIMGEFRSGTTRVLITTD----VWARGLDVQ-QAILFFFLFLFC 351 (354)
Q Consensus 310 ~r~~~~~~f~~g~~~vlv~T~----~~~~Gidi~-~~~~Vi~~~~p~ 351 (354)
..+.++.|..|++++||++. .+-+|+|+| .++.+||+|.|+
T Consensus 372 -~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 -KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred -chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 26778999999999999974 889999999 678999999995
No 96
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.93 E-value=7.1e-24 Score=201.98 Aligned_cols=291 Identities=15% Similarity=0.167 Sum_probs=192.6
Q ss_pred CChHHHHHhHhhhh----cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
++++||.+.+.++. .|.++|+...+|.|||+..+..+...........++|||||. ++..||.+++.++... +
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~--l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPV--L 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCC--C
Confidence 78999999999876 477899999999999987665554332222233458999995 7788899999998753 4
Q ss_pred EEEEEeCCcchHHhHH---hhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCC
Q 018574 131 QAHACVGGKSVGEDIR---KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~ 207 (354)
.+..++|......... ......+|+|+|++.+..... .+....+++||+||+|.+-... ......+..+. ..
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~-a~ 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS-TN 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHHHhh-cC
Confidence 5556666544322221 112357899999998865432 2333468999999999986543 23334444443 34
Q ss_pred cEEEEEeeCchh-HHHH---HHhc-------------------------------------------------cCCCeEE
Q 018574 208 QVVLISATLPHE-ILEM---TTKF-------------------------------------------------MTDPVKI 234 (354)
Q Consensus 208 ~~i~lSaT~~~~-~~~~---~~~~-------------------------------------------------~~~~~~~ 234 (354)
..+++||||-+. ..++ +..+ +......
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 468899997321 1111 0000 0000000
Q ss_pred Ee--cCCcc--c--------------ccC-------c-e-------eEEE-----E---------eccccchHHHHHHHH
Q 018574 235 LV--KRDEL--T--------------LEG-------I-K-------QFFV-----A---------VEREEWKFDTLCDLY 267 (354)
Q Consensus 235 ~~--~~~~~--~--------------~~~-------~-~-------~~~~-----~---------~~~~~~~~~~l~~~l 267 (354)
.+ .-... . ... + . +-+. . +-....++..+.+++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 00 00000 0 000 0 0 0000 0 000123555666666
Q ss_pred hhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCC---CcEEEEccccccCCCcCCCc
Q 018574 268 DTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITTDVWARGLDVQQAI 342 (354)
Q Consensus 268 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gidi~~~~ 342 (354)
... .+.++|||++.......+...|...++.+..++|.++..+|..+++.|++.. ..+|++|.+.+.|+|+..++
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 543 3569999999999999999999989999999999999999999999997643 35688999999999999999
Q ss_pred EEEecCCCCCC
Q 018574 343 LFFFLFLFCNV 353 (354)
Q Consensus 343 ~Vi~~~~p~s~ 353 (354)
+||+||.||||
T Consensus 561 ~VIiyD~dWNP 571 (1033)
T PLN03142 561 IVILYDSDWNP 571 (1033)
T ss_pred EEEEeCCCCCh
Confidence 99999999997
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=9.8e-24 Score=194.39 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=200.0
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|.-..-.+.+| -+..+.||+|||+++.++++.....+.. +-+++|+.-||.|-++.+..+...+|+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G--~iaEm~TGEGKTLvA~l~a~l~al~G~~---v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEG--NIAEMKTGEGKTLTATLPVYLNALTGKG---VHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcC--CcccccCCCCCcHHHHHHHHHHHHcCCC---eEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 455 6777776555444444 4899999999999999988877776654 899999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHH-HHHhcC------CccCCCccEEEEecchhhhccC------------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEMLSRG------------ 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~------~~~~~~~~~vvvDE~h~~~~~~------------ 191 (354)
++..+.++....+....+ .++|+++|...|- ++++.. ....+.+.+.||||+|.++-..
T Consensus 151 ~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 999998876655544333 4899999987763 333331 1123568899999999863111
Q ss_pred ----cHHHHHHHHhhCCC-------------C------------------------------------------------
Q 018574 192 ----FKDQIYDVYRYLPP-------------D------------------------------------------------ 206 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~-------------~------------------------------------------------ 206 (354)
....+..+...+.. +
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 11111111111000 0
Q ss_pred -------------------------------------------------------------------CcEEEEEeeCchh
Q 018574 207 -------------------------------------------------------------------LQVVLISATLPHE 219 (354)
Q Consensus 207 -------------------------------------------------------------------~~~i~lSaT~~~~ 219 (354)
.++.+||+|...+
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 4667777777665
Q ss_pred HHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhhHHHHHHHHhcCCC
Q 018574 220 ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNF 297 (354)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 297 (354)
..++.+.|..+...+....+.... ...-..+.....+...+.+.+.. ..+.|+||||++++.++.++..|.+.++
T Consensus 389 ~~Ef~~iY~l~vv~IPtnkp~~r~---d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi 465 (796)
T PRK12906 389 EEEFREIYNMEVITIPTNRPVIRK---DSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGI 465 (796)
T ss_pred HHHHHHHhCCCEEEcCCCCCeeee---eCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 555554444443322221111111 11111122223367777777643 3667999999999999999999999999
Q ss_pred eEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC---CCc-----EEEecCCCCCC
Q 018574 298 TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ---QAI-----LFFFLFLFCNV 353 (354)
Q Consensus 298 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~---~~~-----~Vi~~~~p~s~ 353 (354)
++..+|+++...++..+.+.++.|. |+|||+++++|+||+ ++. |||++++|.|.
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ 527 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESR 527 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcH
Confidence 9999999987666666656555554 999999999999994 889 99999999874
No 98
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.6e-23 Score=190.79 Aligned_cols=148 Identities=18% Similarity=0.308 Sum_probs=128.2
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 36 DAMGIKDDLLRGIY-----QYGFEKP---SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 36 ~~~~~~~~~~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
+.+++..++.+.+. ..|+..| +|+|.+++..+..+++++..++||+|||++|++|++..+..+. .++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 45678888888776 5788877 9999999999999999999999999999999999998776543 38999
Q ss_pred cCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcCCccCC-------CccEE
Q 018574 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTLRTR-------AIKLL 179 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~~~~~-------~~~~v 179 (354)
+|++.|+.|.++.+..+...+++++..+.||.+..++...+ .++|+|+||++| .++++...+..+ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999999888776555 489999999999 888887655544 45899
Q ss_pred EEecchhhh
Q 018574 180 VLDESDEML 188 (354)
Q Consensus 180 vvDE~h~~~ 188 (354)
|+||||+++
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999864
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.8e-23 Score=190.37 Aligned_cols=273 Identities=17% Similarity=0.224 Sum_probs=189.5
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.|++.|. +-.+.-.+.-+..++||.|||+++.+|++..+..+.. +.||+|+..|+.|.++.+..+...+++++..
T Consensus 82 ~~ydVQl--iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~~---VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQL--LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKG---VHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHH--hcchHhcCCccccccCCCCchHHHHHHHHHHHhcCCC---EEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 4444444 4344445667899999999999999999877765543 9999999999999999999999999999999
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC-CccC-----CCccEEEEecchhhhccC----------------
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEMLSRG---------------- 191 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~-~~~~-----~~~~~vvvDE~h~~~~~~---------------- 191 (354)
+.++.+..+... ...++|+++|+..| .++++.. .+.. ..+.+.|+||+|.++...
T Consensus 157 i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~ 234 (908)
T PRK13107 157 NVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSE 234 (908)
T ss_pred ecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchH
Confidence 988877643322 23589999999998 7777664 2222 678899999999864221
Q ss_pred cHH----HHHHHHhh------------------------------------C------------C---------------
Q 018574 192 FKD----QIYDVYRY------------------------------------L------------P--------------- 204 (354)
Q Consensus 192 ~~~----~~~~i~~~------------------------------------~------------~--------------- 204 (354)
... .+..+... + .
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL 314 (908)
T PRK13107 235 LYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAAL 314 (908)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHH
Confidence 001 11111100 0 0
Q ss_pred -------CC-------------------------------------------------------------CcEEEEEeeC
Q 018574 205 -------PD-------------------------------------------------------------LQVVLISATL 216 (354)
Q Consensus 205 -------~~-------------------------------------------------------------~~~i~lSaT~ 216 (354)
.+ .++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa 394 (908)
T PRK13107 315 RAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTA 394 (908)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCC
Confidence 00 3566677776
Q ss_pred chhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh--hCCCCcEEEEcCchhhHHHHHHHHhc
Q 018574 217 PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTEKMRG 294 (354)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~lvf~~~~~~~~~l~~~l~~ 294 (354)
..+..++.+.|-.+...+.........+.....| . .... +...+.+.+. ...+.|+||||.|++.++.++..|.+
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy-~-t~~~-K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~ 471 (908)
T PRK13107 395 DTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVY-L-TADE-KYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVK 471 (908)
T ss_pred hHHHHHHHHHhCCCEEECCCCCCccceeCCCcEE-e-CHHH-HHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 6655555555444433333222221111111222 1 1122 4444444333 23457899999999999999999999
Q ss_pred CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC
Q 018574 295 YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
.++++..+|+.+...++..+.+.|+.|. |+|||+++++|+||.
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 9999999999999999999999999888 999999999999996
No 100
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=9.8e-23 Score=185.10 Aligned_cols=281 Identities=17% Similarity=0.271 Sum_probs=204.1
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
.++| .+-.+|++++.++.+|..+++.|+|.+|||.++-.++.-.- ....+++|..|-++|.+|-+..++......+
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhccccc
Confidence 3456 89999999999999999999999999999987766554332 2234699999999999999999887664433
Q ss_pred eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcE
Q 018574 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 209 (354)
.++|+.... ..+..+|.|.+.|..++.++.-..+++..|||||+|-+.+..-+-.+.+++-.+|++.++
T Consensus 369 ----LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 369 ----LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ----eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 667776543 347899999999999998877777889999999999998887788999999999999999
Q ss_pred EEEEeeCchhHHHHHHhc---cCCCeEEEecCCcccccCceeE-------------------------------------
Q 018574 210 VLISATLPHEILEMTTKF---MTDPVKILVKRDELTLEGIKQF------------------------------------- 249 (354)
Q Consensus 210 i~lSaT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 249 (354)
|++|||.|+.. ++..+. ....+.+.... ..+-.+.++
T Consensus 438 IlLSATVPN~~-EFA~WIGRtK~K~IyViST~--kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 438 ILLSATVPNTL-EFADWIGRTKQKTIYVISTS--KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred EEEeccCCChH-HHHHHhhhccCceEEEEecC--CCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 99999997753 222221 11111111110 000000000
Q ss_pred --------------------EEEe-------ccccc---hHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCC--
Q 018574 250 --------------------FVAV-------EREEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF-- 297 (354)
Q Consensus 250 --------------------~~~~-------~~~~~---~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-- 297 (354)
+... ..... .+-.+...++...--|++|||-+++.+++.++.|...+.
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 0000 00000 133333444444446899999999999999999976421
Q ss_pred -------------------------------------eEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 298 -------------------------------------TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 298 -------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
...++||++=+--++-+...|..|-++||++|..++.|+|.|
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMP- 673 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMP- 673 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCC-
Confidence 166789998888888888899999999999999999999999
Q ss_pred CcEEEecCC
Q 018574 341 AILFFFLFL 349 (354)
Q Consensus 341 ~~~Vi~~~~ 349 (354)
+++|||-.+
T Consensus 674 ARtvVF~Sl 682 (1248)
T KOG0947|consen 674 ARTVVFSSL 682 (1248)
T ss_pred ceeEEeeeh
Confidence 455555443
No 101
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=2.8e-22 Score=188.05 Aligned_cols=289 Identities=18% Similarity=0.284 Sum_probs=208.0
Q ss_pred HHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 45 LRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
......++| .|-++|++++..+.++.+++++||||+|||.+...++...+..+.+ ++|.+|.++|.+|.+..+...
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qr---viYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQR---VIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCc---eEeccchhhhhhhHHHHHHHH
Confidence 344455777 8999999999999999999999999999999888888777765543 999999999999999887754
Q ss_pred ccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC
Q 018574 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (354)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~ 204 (354)
.....-.+..++|+...+ .++.++|.|.+.|.+++.+.......+..|||||+|.+.+..-+-.+..++-.+|
T Consensus 186 fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 186 FGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 432222234556665443 3478999999999999998878888999999999999998888889999999999
Q ss_pred CCCcEEEEEeeCchhH--HHHHHhccCCCeEEEecCCcccccCceeEEEE-------ecccc------------------
Q 018574 205 PDLQVVLISATLPHEI--LEMTTKFMTDPVKILVKRDELTLEGIKQFFVA-------VEREE------------------ 257 (354)
Q Consensus 205 ~~~~~i~lSaT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~------------------ 257 (354)
.+.++++||||.++.. ...++.....+.++........+ +.+++.. +....
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvP--L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~ 336 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVP--LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFS 336 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCC--eEEEEecCCceeeeecccccchhhcchhhhhhhhccc
Confidence 9999999999997642 22233223344444333221111 1111110 00000
Q ss_pred ----------------------------chHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC--------------
Q 018574 258 ----------------------------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-------------- 295 (354)
Q Consensus 258 ----------------------------~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------- 295 (354)
.....+...+.....-++|+|+-++..|+..+..+...
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ 416 (1041)
T COG4581 337 EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIRE 416 (1041)
T ss_pred hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHH
Confidence 00011222222233357999999999998888777521
Q ss_pred --------------CCe-------------EEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEec
Q 018574 296 --------------NFT-------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFL 347 (354)
Q Consensus 296 --------------~~~-------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~ 347 (354)
+++ ..+.|+++=+.-|..+.+.|..|-.+|+++|..++.|+|.|. +.|++.
T Consensus 417 ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv~~ 494 (1041)
T COG4581 417 IIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVVFT 494 (1041)
T ss_pred HHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-cceeee
Confidence 111 336789999999999999999999999999999999999995 444443
No 102
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=3.3e-21 Score=185.85 Aligned_cols=307 Identities=15% Similarity=0.150 Sum_probs=187.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHh----hhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (354)
+++.+.+.+...|| ++++.|.+.++ .+.+++++++.||||+|||.+|++|++..+. .+.+++|.+||++|..
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHH
Confidence 45577778888888 68999998665 4556889999999999999999999987765 2347999999999999
Q ss_pred HHHH-HHHHhccCcC--eEEEEEeCCcchH-------------------------------------Hh----------H
Q 018574 116 QTEK-VILAIGDFIN--IQAHACVGGKSVG-------------------------------------ED----------I 145 (354)
Q Consensus 116 q~~~-~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------------~~----------~ 145 (354)
|+.. .+..+.+.++ +++..+.|+.+.- .+ +
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~ 386 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFF 386 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhH
Confidence 9865 4554443333 5555555432210 00 0
Q ss_pred H------------------------hhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-------c--
Q 018574 146 R------------------------KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------F-- 192 (354)
Q Consensus 146 ~------------------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-------~-- 192 (354)
. .....++|+|+++..|...+......+...+++||||||++.+.. +
T Consensus 387 ~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~ 466 (850)
T TIGR01407 387 AQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDY 466 (850)
T ss_pred HHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCH
Confidence 0 001236799999998877654432223455799999999974211 0
Q ss_pred ---HHH----------------------------------------------------------------HHHHHhh---
Q 018574 193 ---KDQ----------------------------------------------------------------IYDVYRY--- 202 (354)
Q Consensus 193 ---~~~----------------------------------------------------------------~~~i~~~--- 202 (354)
... +...+..
T Consensus 467 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 546 (850)
T TIGR01407 467 ADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKD 546 (850)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred --------C-------------------------------------CCCCcEEEEEeeCchh-HHHHHHhccCCC--eEE
Q 018574 203 --------L-------------------------------------PPDLQVVLISATLPHE-ILEMTTKFMTDP--VKI 234 (354)
Q Consensus 203 --------~-------------------------------------~~~~~~i~lSaT~~~~-~~~~~~~~~~~~--~~~ 234 (354)
+ +....++++|||+... -.......++-. ...
T Consensus 547 ~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~ 626 (850)
T TIGR01407 547 DFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFN 626 (850)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccc
Confidence 0 0124688999998632 123333333321 111
Q ss_pred EecCCcccccCceeEEEE--ecc-----ccch----HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCC--CeEEE
Q 018574 235 LVKRDELTLEGIKQFFVA--VER-----EEWK----FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN--FTVSS 301 (354)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~--~~~-----~~~~----~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~ 301 (354)
...............+.. .+. .... ...+.+++.. ..++++|||+|.+.++.++..|.... ....+
T Consensus 627 ~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~ 705 (850)
T TIGR01407 627 TIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV 705 (850)
T ss_pred eecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE
Confidence 111111111111111211 110 0111 1222333333 44799999999999999999997521 11223
Q ss_pred eecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCc--EEEecCCCCC
Q 018574 302 MHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAI--LFFFLFLFCN 352 (354)
Q Consensus 302 ~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~--~Vi~~~~p~s 352 (354)
+..+.. .+|.++++.|++++..||++|+.+++|+|+|+.. +||...+|..
T Consensus 706 l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 706 LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCC
Confidence 333333 5788899999999999999999999999999766 6888888853
No 103
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.90 E-value=6.6e-22 Score=185.08 Aligned_cols=282 Identities=13% Similarity=0.097 Sum_probs=167.1
Q ss_pred CChHHHHHhHhhhhc----------CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 55 KPSAIQQRAVMPIIK----------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
-++++|.+++..+.. ++..+++.|||||||.+++..+...+ .....+++|+|+|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 379999999887642 25789999999999988777665544 3334568999999999999999999987
Q ss_pred ccCcCeEEEEEeCCcchHHhHHhhc-CCCeEEEeCcHHHHHHHhc--CCccCCCc-cEEEEecchhhhccCcHHHHHHHH
Q 018574 125 GDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKR--KTLRTRAI-KLLVLDESDEMLSRGFKDQIYDVY 200 (354)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~--~~~~~~~~-~~vvvDE~h~~~~~~~~~~~~~i~ 200 (354)
+.... ....+.......+. ....|+|+|.+++...... ..+..... .+||+||||+.....+...+.
T Consensus 317 ~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~--- 387 (667)
T TIGR00348 317 QKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK--- 387 (667)
T ss_pred CCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH---
Confidence 63210 11112222222222 2368999999999764322 12222122 389999999975443333332
Q ss_pred hhCCCCCcEEEEEeeCchhH----HHHHHhccCCCeEEEecCCcccccCcee--EEEEec--------------------
Q 018574 201 RYLPPDLQVVLISATLPHEI----LEMTTKFMTDPVKILVKRDELTLEGIKQ--FFVAVE-------------------- 254 (354)
Q Consensus 201 ~~~~~~~~~i~lSaT~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------- 254 (354)
+.+ ++...+++||||.... ........+++.... .-.+.-.++... .|....
T Consensus 388 ~~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y-~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~ 465 (667)
T TIGR00348 388 KAL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRY-FITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFEL 465 (667)
T ss_pred hhC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEe-eHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHh
Confidence 334 4567999999995321 111111111222111 111110111000 000000
Q ss_pred --c--ccc---------------------hHHHHHHHHhh----C--CCCcEEEEcCchhhHHHHHHHHhcC-----CCe
Q 018574 255 --R--EEW---------------------KFDTLCDLYDT----L--TITQAVIFCNTKRKVDWLTEKMRGY-----NFT 298 (354)
Q Consensus 255 --~--~~~---------------------~~~~l~~~l~~----~--~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~ 298 (354)
. ... .......+++. . ..+|++|+|.++++|..+++.|.+. +..
T Consensus 466 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~ 545 (667)
T TIGR00348 466 LPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEAS 545 (667)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCe
Confidence 0 000 00001111111 1 2379999999999999999998664 234
Q ss_pred EEEeecCCCHH---------------------HHHHHHHHHhC-CCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 299 VSSMHGDMPQK---------------------ERDAIMGEFRS-GTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 299 ~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
..++++..+.. ....+++.|++ ++.+|||+++++.+|+|.|.+++++..-
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldK 617 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDK 617 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEec
Confidence 55565543322 12367888876 6889999999999999999999987643
No 104
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.89 E-value=2.6e-21 Score=156.60 Aligned_cols=187 Identities=35% Similarity=0.595 Sum_probs=150.0
Q ss_pred HCCCCCChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCc
Q 018574 50 QYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (354)
..++..++++|.+++..+... +.+++.+|||+|||.+++.+++..+.... ..+++|++|+.+++.|+.+.+.......
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 356678999999999999998 99999999999999989888888776553 3469999999999999999998877654
Q ss_pred CeEEEEEeCCcchHHhHHhhcCCC-eEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCC
Q 018574 129 NIQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~ 207 (354)
........++............+. +++++|++.+.+...........++++|+||+|.+....+...+..++..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 433334444444344444455555 9999999999998887666677889999999999986567788888888887889
Q ss_pred cEEEEEeeCchhHHHHHHhccCCCeEEEec
Q 018574 208 QVVLISATLPHEILEMTTKFMTDPVKILVK 237 (354)
Q Consensus 208 ~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~ 237 (354)
+++++|||++.........+......+...
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 999999999988888888877765555433
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=2.1e-21 Score=183.57 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=187.5
Q ss_pred CChHHHHHhHhhhhc---CC-cEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 55 KPSAIQQRAVMPIIK---GR-DVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~---~~-~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
..++.|..+++.+.+ .. .+++.+|||.|||.+.+.++...+.. .....+++++.|++++.++++++++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 458999999988776 34 78999999999999999999888776 34556899999999999999999998775544
Q ss_pred eEEEEEeCCcchHHhHHh-----h---------cCCCeEEEeCcHHHHHHHh-cCCcc---CCCccEEEEecchhhhccC
Q 018574 130 IQAHACVGGKSVGEDIRK-----L---------EHGVHVVSGTPGRVCDMIK-RKTLR---TRAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-----~---------~~~~~iiv~T~~~l~~~~~-~~~~~---~~~~~~vvvDE~h~~~~~~ 191 (354)
......++.......... . ..-..++++|+........ ...+. .-..+.+|+||+|.+....
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 333322332221111000 0 0012233444433333111 11111 1134789999999997763
Q ss_pred cHHHHHHHHhhC-CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcc---cccCcee-EEEEeccccchHHHHHHH
Q 018574 192 FKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL---TLEGIKQ-FFVAVEREEWKFDTLCDL 266 (354)
Q Consensus 192 ~~~~~~~i~~~~-~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~ 266 (354)
....+..++..+ ..+..++++|||+|+.....+.........+....... ....... ......... ........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~ 433 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIELI 433 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hHhhhhcc
Confidence 233333333332 34778999999999999998888777655444332200 1111111 111111100 01112222
Q ss_pred Hh-hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHH----hCCCCcEEEEccccccCCCcCCC
Q 018574 267 YD-TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF----RSGTTRVLITTDVWARGLDVQQA 341 (354)
Q Consensus 267 l~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f----~~g~~~vlv~T~~~~~Gidi~~~ 341 (354)
.. ...+++++|.|||++.|.+++..|+..+..+..+|+.+...+|.+.++.+ +.++..|+|+|++++.|+|+. .
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-f 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-c
Confidence 22 23457899999999999999999999877899999999999998887654 457889999999999999996 6
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
+++|-
T Consensus 513 d~mIT 517 (733)
T COG1203 513 DVLIT 517 (733)
T ss_pred Ceeee
Confidence 66653
No 106
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.88 E-value=1.7e-20 Score=167.34 Aligned_cols=291 Identities=16% Similarity=0.180 Sum_probs=195.2
Q ss_pred CChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.+++||.+-++++.+ |-++|+...+|.|||+..+..+.+...........||++|...| ..|..+++++... +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~--l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPS--L 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCC--c
Confidence 789999999999875 67899999999999977666555444433323348999996554 5588888888765 6
Q ss_pred EEEEEeCCcchHHhHHh-h--cCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCC
Q 018574 131 QAHACVGGKSVGEDIRK-L--EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~-~--~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~ 207 (354)
++..++|+......... + ....+|+++|++...+- ...+...++.++||||+|++-... ..+..+++.+....
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~n 319 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTDN 319 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcccc
Confidence 77788888755444332 1 23589999999988654 223444578999999999996654 34445666664444
Q ss_pred cEEEEEeeCchhHH-HHHH------------------hc----------------------------------cCCCeEE
Q 018574 208 QVVLISATLPHEIL-EMTT------------------KF----------------------------------MTDPVKI 234 (354)
Q Consensus 208 ~~i~lSaT~~~~~~-~~~~------------------~~----------------------------------~~~~~~~ 234 (354)
.+++|+||-+... +++. .+ +.....+
T Consensus 320 -rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 320 -RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred -eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 5788999632210 0000 00 0000000
Q ss_pred EecCCc---------------------------ccccCc--------eeEEEE--ecc------------ccchHHHHHH
Q 018574 235 LVKRDE---------------------------LTLEGI--------KQFFVA--VER------------EEWKFDTLCD 265 (354)
Q Consensus 235 ~~~~~~---------------------------~~~~~~--------~~~~~~--~~~------------~~~~~~~l~~ 265 (354)
.+-.+. ..+.++ .+-|.. ..+ ...|+..|.+
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDk 478 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDK 478 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHH
Confidence 000000 000000 000000 000 0125566666
Q ss_pred HHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCC---CcEEEEccccccCCCcCC
Q 018574 266 LYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 266 ~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T~~~~~Gidi~~ 340 (354)
++... .++++|||.+.....+-+..++.-+++....++|.++.++|...++.|...+ +-.|++|.+.+.|||+..
T Consensus 479 LL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 479 LLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred HHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 66543 3579999999999988888888777899999999999999999999998754 335889999999999999
Q ss_pred CcEEEecCCCCCC
Q 018574 341 AILFFFLFLFCNV 353 (354)
Q Consensus 341 ~~~Vi~~~~p~s~ 353 (354)
++.||+||--|||
T Consensus 559 ADtVIlyDSDWNP 571 (971)
T KOG0385|consen 559 ADTVILYDSDWNP 571 (971)
T ss_pred ccEEEEecCCCCc
Confidence 9999999999987
No 107
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=6.2e-21 Score=172.42 Aligned_cols=275 Identities=19% Similarity=0.240 Sum_probs=173.8
Q ss_pred CChHHHHHhHhhhhc----C-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
.+++||..++..+.+ | +.+++.++||+|||.+++..+ ..+.....-+++|+|+.+++|+.|.+..++.+.....
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii-~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAII-DRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHH-HHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 689999999877654 3 569999999999998766554 4455555567899999999999999999888775422
Q ss_pred -eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-----CccCCCccEEEEecchhhhccCcHHHHHHHHhhC
Q 018574 130 -IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (354)
Q Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~ 203 (354)
.+......+. ..+.|.++|.+.+....... .+....|++||+||||+-... ....++.++
T Consensus 244 ~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~----~~~~I~dYF 309 (875)
T COG4096 244 KMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS----EWSSILDYF 309 (875)
T ss_pred ceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh----hhHHHHHHH
Confidence 2221111111 13799999999998877654 344566999999999986433 344555555
Q ss_pred CCCCcEEEEEeeCchhHHHHHHhcc-CCCeEEEe----------------------cCCcccccCc--------------
Q 018574 204 PPDLQVVLISATLPHEILEMTTKFM-TDPVKILV----------------------KRDELTLEGI-------------- 246 (354)
Q Consensus 204 ~~~~~~i~lSaT~~~~~~~~~~~~~-~~~~~~~~----------------------~~~~~~~~~~-------------- 246 (354)
..- .+++||||........-.++ +.|..... ....+.+...
T Consensus 310 dA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~d 387 (875)
T COG4096 310 DAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDED 387 (875)
T ss_pred HHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcc
Confidence 332 35569998664333222222 22221110 0111111100
Q ss_pred eeEEEEec---------cccchHHHHHHHHhh--CC--CCcEEEEcCchhhHHHHHHHHhcC-----CCeEEEeecCCCH
Q 018574 247 KQFFVAVE---------REEWKFDTLCDLYDT--LT--ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQ 308 (354)
Q Consensus 247 ~~~~~~~~---------~~~~~~~~l~~~l~~--~~--~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~ 308 (354)
.+.+.... ........+...+.. .. .+|+||||.+..+|+.+...|.+. +--+..++++..
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~- 466 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE- 466 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch-
Confidence 00000000 000112344444444 11 368999999999999999999765 234666777643
Q ss_pred HHHHHHHHHHhC--CCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 309 KERDAIMGEFRS--GTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 309 ~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
+-...+..|.. .-..|.++.+++.+|+|+|.|.+++++-
T Consensus 467 -~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r 507 (875)
T COG4096 467 -QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDR 507 (875)
T ss_pred -hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehh
Confidence 33344566654 3467888889999999999999999864
No 108
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=1.9e-21 Score=172.74 Aligned_cols=277 Identities=17% Similarity=0.275 Sum_probs=203.9
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.+-|+|..++.-+-+++.+++.|.|.+|||.++-.++...+... .+++|..|-++|.+|-+.++..-... +..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~D----VGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKD----VGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcc----cce
Confidence 78999999999988999999999999999988888877776544 35999999999999999988765433 334
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEe
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
.+|+...+ ..+--+|.|.+.|..++.++.--...+..|||||+|-|-+..-+-.|.+-+-.+|.+.+.+++||
T Consensus 202 MTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 45554433 23567899999999998887777788999999999999887766666666777889999999999
Q ss_pred eCchhH--HHHHHhccCCCeEEEecCCccccc-------CceeEEEEecccc-c--------------------------
Q 018574 215 TLPHEI--LEMTTKFMTDPVKILVKRDELTLE-------GIKQFFVAVEREE-W-------------------------- 258 (354)
Q Consensus 215 T~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~-------------------------- 258 (354)
|+|+.. .+.+......|.++.+.....++- +-...|..+.... .
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~ 354 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANK 354 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccc
Confidence 998752 233344455676666555432211 1111112111110 0
Q ss_pred ---------------hHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCe-------------------------
Q 018574 259 ---------------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT------------------------- 298 (354)
Q Consensus 259 ---------------~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~------------------------- 298 (354)
.+..+.+.+-.....|+|||+-++++++.+|-.+.++...
T Consensus 355 k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~ 434 (1041)
T KOG0948|consen 355 KGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRE 434 (1041)
T ss_pred ccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhcc
Confidence 1112222333334468999999999999999888764211
Q ss_pred --------------EEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE
Q 018574 299 --------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF 345 (354)
Q Consensus 299 --------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi 345 (354)
..++|+++=+--++.+.-.|.+|-+++|+||...+.|+|.|.-++|+
T Consensus 435 LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF 495 (1041)
T KOG0948|consen 435 LPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF 495 (1041)
T ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE
Confidence 56789999888888888889999999999999999999999655543
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.87 E-value=7e-20 Score=170.80 Aligned_cols=282 Identities=15% Similarity=0.212 Sum_probs=195.8
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH-hccCcCeEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAH 133 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~ 133 (354)
..+....+++..+.+++.++|.++||+|||+..-..+++.-. ..+..+.+.=|.+--+..+++++.. ++...|-.+.
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 457777888888899999999999999999877766666554 2233566667888666666666544 3333333332
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh-ccC-cHHHHHHHHhhCCCCCcEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRG-FKDQIYDVYRYLPPDLQVVL 211 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~-~~~-~~~~~~~i~~~~~~~~~~i~ 211 (354)
+-.-..+ .....+.|-+.|.+.|.+.+.+... ++.+++||+||+|+=. +.+ ....+..++...+.+.++|.
T Consensus 128 Y~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 2211111 1223478999999999998886554 6789999999999742 222 23455666777777899999
Q ss_pred EEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccc-hHHHHH---HHHhhCCCCcEEEEcCchhhHHH
Q 018574 212 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW-KFDTLC---DLYDTLTITQAVIFCNTKRKVDW 287 (354)
Q Consensus 212 lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~---~~l~~~~~~~~lvf~~~~~~~~~ 287 (354)
||||+..+.. +.++.+.-.+.+.... ..+..+|......+. ..+.+. ........|.+|||.+..++.+.
T Consensus 201 mSATld~~rf---s~~f~~apvi~i~GR~---fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 201 MSATLDAERF---SAYFGNAPVIEIEGRT---YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EecccCHHHH---HHHcCCCCEEEecCCc---cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 9999977432 3455543333333331 122333322222222 223333 33334456889999999999999
Q ss_pred HHHHHhc--C--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 288 LTEKMRG--Y--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 288 l~~~l~~--~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
+.+.|++ . ...+..+||.++.+++.++++--..|+-+|+++|+++++++.||+++.||.-+.-+
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak 342 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAK 342 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccc
Confidence 9999987 3 47788999999999999998877777778999999999999999999999977643
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.9e-20 Score=170.77 Aligned_cols=280 Identities=20% Similarity=0.229 Sum_probs=181.6
Q ss_pred CChHHHHHhHhhhhcC----CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~----~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.+++-|..+++.+... ...++.+.||||||.+|+-.+...+..++ .+|+++|-.+|..|+.++++... +.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh---CC
Confidence 5788999999988765 67899999999999999999988887664 59999999999999999998755 35
Q ss_pred EEEEEeCCcchH---HhHHhhc-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC------cHHHHHHHH
Q 018574 131 QAHACVGGKSVG---EDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------FKDQIYDVY 200 (354)
Q Consensus 131 ~~~~~~~~~~~~---~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~------~~~~~~~i~ 200 (354)
++..++.+-+.. ..+.+.. ....|+|||-..+ ..++.++++||+||-|.-.-.+ ..+.+-.+.
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 666666654433 3333443 5589999997665 4466799999999999753221 234444444
Q ss_pred hhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEecccc------chHHHHHHHHhhC-CCC
Q 018574 201 RYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE------WKFDTLCDLYDTL-TIT 273 (354)
Q Consensus 201 ~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~-~~~ 273 (354)
... .+.++++-|||+.-+..............+.-.......+.+. +..+..+. .....+..+-+.. .+.
T Consensus 345 a~~-~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~ge 421 (730)
T COG1198 345 AKK-ENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLERGE 421 (730)
T ss_pred HHH-hCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcce--EEeccccccccCccCCHHHHHHHHHHHhcCC
Confidence 443 5778999999998766555533211111111111111122211 11111111 0122222222211 223
Q ss_pred cEEEEcCchhhH------------------------------------------------------------HHHHHHHh
Q 018574 274 QAVIFCNTKRKV------------------------------------------------------------DWLTEKMR 293 (354)
Q Consensus 274 ~~lvf~~~~~~~------------------------------------------------------------~~l~~~l~ 293 (354)
++|+|.|.+..+ +++.+.|+
T Consensus 422 Q~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~ 501 (730)
T COG1198 422 QVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELK 501 (730)
T ss_pred eEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHH
Confidence 555555533322 44444444
Q ss_pred cC--CCeEEEeecCCCH--HHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 294 GY--NFTVSSMHGDMPQ--KERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 294 ~~--~~~~~~~~~~~~~--~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
+. +.++..++++... ..-+..++.|.+|+.+|||+|+++..|.|+|+++.|..+|.-
T Consensus 502 ~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD 562 (730)
T COG1198 502 RLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDAD 562 (730)
T ss_pred HHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEech
Confidence 43 4567777777654 334577899999999999999999999999999998877653
No 111
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=1.1e-20 Score=161.14 Aligned_cols=271 Identities=19% Similarity=0.211 Sum_probs=182.3
Q ss_pred CChHHHHHhHhhhhcC---CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeE
Q 018574 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (354)
+++|||.+.+.....+ +..+|..|+|+|||++-+.+++.. +..+|++|.+..-+.||.++++.+...-+-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 6899999999887653 578999999999997665443322 2359999999999999999999998666666
Q ss_pred EEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc--------CCccCCCccEEEEecchhhhccCcHHHHHHHHhhC
Q 018574 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (354)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~ 203 (354)
++.++.+... ....++.|+|+|..++-.-..+ ..+....++++++||+|.+.+.-|++.+..+..++
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC 450 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh
Confidence 6666655432 2456789999999776532221 12234678999999999987777887777775554
Q ss_pred CCCCcEEEEEeeCchhHHHHHH-hccCCCe---------------EEEecCC-------ccc----ccCc--eeEEEEec
Q 018574 204 PPDLQVVLISATLPHEILEMTT-KFMTDPV---------------KILVKRD-------ELT----LEGI--KQFFVAVE 254 (354)
Q Consensus 204 ~~~~~~i~lSaT~~~~~~~~~~-~~~~~~~---------------~~~~~~~-------~~~----~~~~--~~~~~~~~ 254 (354)
.+++|||+-.+...+.. .|+-.|. .-..... +.. .... +.....+.
T Consensus 451 -----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN 525 (776)
T KOG1123|consen 451 -----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN 525 (776)
T ss_pred -----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC
Confidence 48999997433211111 0111110 0000000 000 0011 11111111
Q ss_pred cccchHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhC-CCCcEEEEccc
Q 018574 255 REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDV 331 (354)
Q Consensus 255 ~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~ 331 (354)
+. |.....-+++.+ .++|+|||..+.-...+++-.|.+ ..++|.+++.+|.++++.|+. ..++.++.+.+
T Consensus 526 P~--KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 526 PN--KFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred cc--hhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 11 343333333322 457999999998888888877754 567899999999999999985 46788999999
Q ss_pred cccCCCcCCCcEEEecC
Q 018574 332 WARGLDVQQAILFFFLF 348 (354)
Q Consensus 332 ~~~Gidi~~~~~Vi~~~ 348 (354)
....+|+|.++++|...
T Consensus 599 gDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQIS 615 (776)
T ss_pred cCccccCCcccEEEEEc
Confidence 99999999999999864
No 112
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=2.6e-19 Score=160.37 Aligned_cols=291 Identities=17% Similarity=0.155 Sum_probs=190.3
Q ss_pred CChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.+.+||++.++++.+ +...|+-..+|.|||...+..+...........++|||||. ++..||..++..+... +
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~--~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP--F 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc--e
Confidence 579999999999875 56789999999999976655544444332333569999995 7889999999998765 5
Q ss_pred EEEEEeCCcch--------HHhHH-----hhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHH
Q 018574 131 QAHACVGGKSV--------GEDIR-----KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (354)
Q Consensus 131 ~~~~~~~~~~~--------~~~~~-----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~ 197 (354)
++..+++.... ..... ....+..|+++|.+.+.-. ...+....++++|+||.|.+-++. ..+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKIS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHHH
Confidence 55555554331 00111 1123467899998766332 234455678999999999997664 2222
Q ss_pred HHHhhCCCCCcEEEEEeeCchhH-HHHHH---------------------------------------------------
Q 018574 198 DVYRYLPPDLQVVLISATLPHEI-LEMTT--------------------------------------------------- 225 (354)
Q Consensus 198 ~i~~~~~~~~~~i~lSaT~~~~~-~~~~~--------------------------------------------------- 225 (354)
.....+ +..+.+++|+||.+.. .++++
T Consensus 358 lackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 223333 3445677888853321 11110
Q ss_pred -hc-------------cCC-CeEEEecCC------------------------cc------------cccCcee------
Q 018574 226 -KF-------------MTD-PVKILVKRD------------------------EL------------TLEGIKQ------ 248 (354)
Q Consensus 226 -~~-------------~~~-~~~~~~~~~------------------------~~------------~~~~~~~------ 248 (354)
.| +.. ...+.+..- .. ..+.+..
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 00 000 000000000 00 0000000
Q ss_pred ----EEEEeccccchHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHh-cCCCeEEEeecCCCHHHHHHHHHHHhCC
Q 018574 249 ----FFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMR-GYNFTVSSMHGDMPQKERDAIMGEFRSG 321 (354)
Q Consensus 249 ----~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g 321 (354)
-+........++..+.++++.+ .+.++++|.+++....-+...|. .-++.+..++|.++...|..+++.|+++
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 0001111123677777777654 34689999999999999999998 4689999999999999999999999987
Q ss_pred C-CcE-EEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 322 T-TRV-LITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 322 ~-~~v-lv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+ +.| |++|.+.+-|+|+..++.||.||.-|||
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNP 630 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNP 630 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCC
Confidence 5 444 7778999999999999999999999987
No 113
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.84 E-value=7e-19 Score=155.60 Aligned_cols=275 Identities=14% Similarity=0.209 Sum_probs=186.7
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH-----HhccCcC
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-----AIGDFIN 129 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-----~~~~~~~ 129 (354)
..+.+-.+++..+.+++-+++.|+||+|||+..-..+...-... .+. +-+.=|++--+..++++.. .+++..+
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~-~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS-SGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc-CCc-EEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 55677778999999999999999999999976655555443333 233 6666688755554444432 2333344
Q ss_pred eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc--CcHHHHHHHHhhCCCCC
Q 018574 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~--~~~~~~~~i~~~~~~~~ 207 (354)
..+.+-.... ..+.|.+.|.+.|++.+..... ++++++||+||||.-.-. -....++.+.+. +++.
T Consensus 129 Y~IRFed~ts----------~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~L 196 (674)
T KOG0922|consen 129 YTIRFEDSTS----------KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDL 196 (674)
T ss_pred eEEEecccCC----------CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCc
Confidence 4443322111 1378999999999987765443 578999999999963211 122344444443 3567
Q ss_pred cEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch---HHHHHHHHhhCCCCcEEEEcCchhh
Q 018574 208 QVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK---FDTLCDLYDTLTITQAVIFCNTKRK 284 (354)
Q Consensus 208 ~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~lvf~~~~~~ 284 (354)
+++.+|||+..+. .+.|+.....+.+.... ..+...|..-+..++- +..+.++....+.+.+|||....++
T Consensus 197 klIimSATlda~k---fS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 197 KLIIMSATLDAEK---FSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred eEEEEeeeecHHH---HHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHH
Confidence 8999999997543 33455543233333321 1233444443333333 3334444445667899999999999
Q ss_pred HHHHHHHHhcC----C----CeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 285 VDWLTEKMRGY----N----FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 285 ~~~l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
.+.+.+.|.+. + ..+..+||.++.+++.++++.-..|.-+|+++|+++++.+.||.+..||+-|+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~ 343 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGF 343 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCc
Confidence 99999999765 1 12467999999999999998888899999999999999999999999998775
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=4.3e-18 Score=162.25 Aligned_cols=287 Identities=16% Similarity=0.184 Sum_probs=174.4
Q ss_pred CCCCCChHHHHHhHhhhh----cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHH-HHHHHHhc
Q 018574 51 YGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIG 125 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~-~~~~~~~~ 125 (354)
-|| +.|+.|.+....+. .++.+++.|+||+|||++|++|++... .+.+++|.+||++|+.|. .+.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 455 78999998555443 478899999999999999999988754 245799999999999999 46677666
Q ss_pred cCcCeEEEEEeCCcchH-----------------------------------------------HhHHh-----------
Q 018574 126 DFINIQAHACVGGKSVG-----------------------------------------------EDIRK----------- 147 (354)
Q Consensus 126 ~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~----------- 147 (354)
...++++..+.|+.+.- ..+..
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 66666666555542210 00000
Q ss_pred -------------hcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-----c-------HHH-------
Q 018574 148 -------------LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----F-------KDQ------- 195 (354)
Q Consensus 148 -------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-----~-------~~~------- 195 (354)
-...++|+|+++..|...+..... +...+.+||||||++.+.. . ...
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 011367999999888775543322 3568999999999974211 0 000
Q ss_pred -------------------------------------------H-----------HHHHhh------C------------
Q 018574 196 -------------------------------------------I-----------YDVYRY------L------------ 203 (354)
Q Consensus 196 -------------------------------------------~-----------~~i~~~------~------------ 203 (354)
+ ..++.. +
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 0 000000 0
Q ss_pred ---------------CCCCcEEEEEeeCc--hhHHHHHHhccCCCeEEEecCCcccccCceeEEEE--eccc-----cch
Q 018574 204 ---------------PPDLQVVLISATLP--HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA--VERE-----EWK 259 (354)
Q Consensus 204 ---------------~~~~~~i~lSaT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~ 259 (354)
+....++++|||+. +.. .+ ...++-......... .....-...+.. .+.. ...
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~~-~~~~~~~~~~i~~~~p~~~~~~~~~~ 632 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKIE-KDKKQDQLVVVDQDMPLVTETSDEVY 632 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecCC-CChHHccEEEeCCCCCCCCCCChHHH
Confidence 01146788888884 222 22 222221111110000 111111111111 1110 111
Q ss_pred ----HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Q 018574 260 ----FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (354)
Q Consensus 260 ----~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 335 (354)
.+.+..+. ...++++|+++|.+..+.+++.|....... ..-|... .+..+++.|++++..||++|..+++|
T Consensus 633 ~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEG 707 (820)
T PRK07246 633 AEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEG 707 (820)
T ss_pred HHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCC
Confidence 12222333 346899999999999999999997654444 3334222 35668999999989999999999999
Q ss_pred CCcC--CCcEEEecCCCC
Q 018574 336 LDVQ--QAILFFFLFLFC 351 (354)
Q Consensus 336 idi~--~~~~Vi~~~~p~ 351 (354)
+|+| ....||...+|-
T Consensus 708 VD~p~~~~~~viI~kLPF 725 (820)
T PRK07246 708 VDFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCCeEEEEEecCCC
Confidence 9997 466778888884
No 115
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=163.13 Aligned_cols=288 Identities=16% Similarity=0.232 Sum_probs=194.4
Q ss_pred HHHHCCCCCChHHHHHhH--hhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 47 GIYQYGFEKPSAIQQRAV--MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~--~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
..+..|...++.||.+.+ +.++++++.+..+||+.|||+++-+.++..+.... +.++.+.|..+.+..-...+..+
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r--r~~llilp~vsiv~Ek~~~l~~~ 292 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR--RNVLLILPYVSIVQEKISALSPF 292 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh--hceeEecceeehhHHHHhhhhhh
Confidence 445578889999998876 46778999999999999999999988887776543 35899999999999888888888
Q ss_pred ccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc--CCccCCCccEEEEecchhhhccCcHHHHHHHHhh
Q 018574 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (354)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~ 202 (354)
....|+.+....|...... ..+.-.+.|+|.++-..+... ..-....+++|||||.|.+.+.+-+..+..++..
T Consensus 293 ~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k 368 (1008)
T KOG0950|consen 293 SIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAK 368 (1008)
T ss_pred ccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHH
Confidence 8888888876665443322 223357999998876544332 2223457899999999999888766666655543
Q ss_pred C-----CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccc-cCc--eeEEEEeccccchHHHHHHHH-------
Q 018574 203 L-----PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL-EGI--KQFFVAVEREEWKFDTLCDLY------- 267 (354)
Q Consensus 203 ~-----~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~l------- 267 (354)
+ ....|+++||||+++. .....++....... ....... +.+ ........ +...+..+-
T Consensus 369 ~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t-~fRPv~L~E~ik~G~~i~~~~----r~~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 369 ILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTT-RFRPVPLKEYIKPGSLIYESS----RNKVLREIANLYSSNL 441 (1008)
T ss_pred HHHhccccceeEeeeecccCCh--HHHHHHhhhhheec-ccCcccchhccCCCcccccch----hhHHHHHhhhhhhhhc
Confidence 3 2345799999999762 22222222111110 0000000 000 00000000 111111111
Q ss_pred -------------hhCCC-CcEEEEcCchhhHHHHHHHHhcC--------------------------------------
Q 018574 268 -------------DTLTI-TQAVIFCNTKRKVDWLTEKMRGY-------------------------------------- 295 (354)
Q Consensus 268 -------------~~~~~-~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------- 295 (354)
+..+. ..+||||++++.++.++..+...
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 11112 35999999999998887655320
Q ss_pred CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEec
Q 018574 296 NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFL 347 (354)
Q Consensus 296 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~ 347 (354)
...+..+|++++.++|+.+...|++|...|+.+|+.+..|+++|..+++|-.
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira 573 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA 573 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC
Confidence 1337788999999999999999999999999999999999999988877753
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.82 E-value=2.4e-18 Score=148.26 Aligned_cols=138 Identities=22% Similarity=0.250 Sum_probs=103.6
Q ss_pred CcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhh
Q 018574 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRK 284 (354)
Q Consensus 207 ~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~ 284 (354)
.|++++||||.+...+... +......+.+...-.+. ..+.+....++.|..-++. ..+.+++|-+-|++.
T Consensus 387 ~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~-----ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPE-----IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCc-----eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 6999999999876444322 11222222222221121 2222333355555554443 345799999999999
Q ss_pred HHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCC
Q 018574 285 VDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 285 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
|+.+.++|.+.|+++..+|++...-+|.+++++++.|.++|||+.+.+.+|+|+|.|..|..+|.-+-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKe 526 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKE 526 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999987553
No 117
>COG4889 Predicted helicase [General function prediction only]
Probab=99.81 E-value=9.3e-20 Score=164.73 Aligned_cols=317 Identities=17% Similarity=0.204 Sum_probs=192.0
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC----CcEEEEcCCCCchhhHhHHHHhhccccCCCceeE
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~ 104 (354)
.++--.|+.+.. .++..++.-..-.+|+|||+.++++..+| .+.=+.++||+|||+..+-..-+... .++
T Consensus 136 ~es~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~i 209 (1518)
T COG4889 136 AESPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARI 209 (1518)
T ss_pred hcCCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hhe
Confidence 344456666543 35556666666668999999999988764 56677899999999888765544332 469
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHH-----------------------hHHhh--cCCCeEEEeCc
Q 018574 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE-----------------------DIRKL--EHGVHVVSGTP 159 (354)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~iiv~T~ 159 (354)
|+++|+.+|..|...+...-. ...++...++.+..... .+... ..+--|+++|.
T Consensus 210 L~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred EeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 999999999999888776543 33444444333322110 11111 12346899999
Q ss_pred HHHHHHHhcCCccCCCccEEEEecchhhhccCcH-HHHHHHHhhCC-----CCCcEEEEEeeCchhHHHHHH--------
Q 018574 160 GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK-DQIYDVYRYLP-----PDLQVVLISATLPHEILEMTT-------- 225 (354)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~-~~~~~i~~~~~-----~~~~~i~lSaT~~~~~~~~~~-------- 225 (354)
+++....+....-+..+++||.||||+....... ..-..+ ..+. +..+.+.|||||.-..+....
T Consensus 289 QSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saF-t~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 289 QSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAF-TRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred cchHHHHHHHHcCCCCccEEEecchhccccceecccCcccc-eeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999888877777788999999999986422111 000001 1110 234568899997422111111
Q ss_pred -------------------------hccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCC---------
Q 018574 226 -------------------------KFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT--------- 271 (354)
Q Consensus 226 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------- 271 (354)
-++.+...+....++.......+....-+......+...+++..+.
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 0111121122111111111111111111111223344433332221
Q ss_pred ------------CCcEEEEcCchhhHHHHHHHHhc---------------CCCeEEEeecCCCHHHHHHHHH---HHhCC
Q 018574 272 ------------ITQAVIFCNTKRKVDWLTEKMRG---------------YNFTVSSMHGDMPQKERDAIMG---EFRSG 321 (354)
Q Consensus 272 ------------~~~~lvf~~~~~~~~~l~~~l~~---------------~~~~~~~~~~~~~~~~r~~~~~---~f~~g 321 (354)
..+.|-||.++++..++++.+.. +.+.+..++|.|+..+|....+ .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 13689999999998888876642 2345667789999999865543 34556
Q ss_pred CCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 322 TTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 322 ~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+.+||-....+++|+|+|.++.|||||.-+|+
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~sm 559 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSM 559 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhH
Confidence 78888888999999999999999999977664
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.7e-17 Score=149.24 Aligned_cols=275 Identities=14% Similarity=0.201 Sum_probs=185.3
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|.-..-.+++| -+..+.||.|||+++.+++......+. .+-+++|+.-|+.|-++.+..+...+++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 455 7888888777777766 477999999999999998887776554 4999999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHH-HHHhcC------CccCCCccEEEEecchhhhccC------------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEMLSRG------------ 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~------~~~~~~~~~vvvDE~h~~~~~~------------ 191 (354)
++..+.++.+..+....+ .++|+++|...+- ++++.. ......+.+.||||+|.++-..
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 999988877655544444 4899999987652 333321 2233568899999999863111
Q ss_pred ---cHHHHHHHHhhCCCC--------------------------------------------------------------
Q 018574 192 ---FKDQIYDVYRYLPPD-------------------------------------------------------------- 206 (354)
Q Consensus 192 ---~~~~~~~i~~~~~~~-------------------------------------------------------------- 206 (354)
....+..+...+..+
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 111122222222100
Q ss_pred --------------------------------------------------------CcEEEEEeeCchhHHHHHHhccCC
Q 018574 207 --------------------------------------------------------LQVVLISATLPHEILEMTTKFMTD 230 (354)
Q Consensus 207 --------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~ 230 (354)
.++.+||+|......++.+.|-.+
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~ 386 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLG 386 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCc
Confidence 467788888876666666555544
Q ss_pred CeEEEecCCcccccCceeEEEEeccccchHHHHHHHH-hh-CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCH
Q 018574 231 PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (354)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (354)
...+....+..........|.. ...+...+.+-+ +. ..+.|+||.|.+++.++.++..|.+.++++.++++....
T Consensus 387 Vv~IPtnkp~~R~d~~d~iy~t---~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~ 463 (764)
T PRK12326 387 VSVIPPNKPNIREDEADRVYAT---AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA 463 (764)
T ss_pred EEECCCCCCceeecCCCceEeC---HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH
Confidence 3332222221111111122221 222444444443 32 356799999999999999999999999999999987443
Q ss_pred HHHHHHHHHHhCC-CCcEEEEccccccCCCcC
Q 018574 309 KERDAIMGEFRSG-TTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 309 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 339 (354)
.+ .+++. ..| ...|-|+|+++++|.||.
T Consensus 464 ~E-A~IIa--~AG~~gaVTIATNMAGRGTDIk 492 (764)
T PRK12326 464 EE-ARIIA--EAGKYGAVTVSTQMAGRGTDIR 492 (764)
T ss_pred hH-HHHHH--hcCCCCcEEEEecCCCCccCee
Confidence 22 33333 345 467999999999999996
No 119
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.80 E-value=3.6e-18 Score=130.25 Aligned_cols=144 Identities=35% Similarity=0.523 Sum_probs=111.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
+++++.+|||+|||..++..+.+..... ...+++|++|+..++.|+.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 4689999999999999998888776653 3457999999999999999999887765 5677777776655555444566
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
..+++++|++.+.............++++|+||+|.+....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999887776655566789999999999977654443222334445678899999996
No 120
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.80 E-value=1.1e-18 Score=139.38 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=103.3
Q ss_pred CChHHHHHhHhhhhc-------CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccC
Q 018574 55 KPSAIQQRAVMPIIK-------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~-------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (354)
+|+++|.+++..+.. .+++++.+|||+|||.+++..+..... ++++++|+.+|..|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 689999999999884 589999999999999888865555543 6999999999999999999766643
Q ss_pred cCeEEEE-----------EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-----------CccCCCccEEEEecch
Q 018574 128 INIQAHA-----------CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----------TLRTRAIKLLVLDESD 185 (354)
Q Consensus 128 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----------~~~~~~~~~vvvDE~h 185 (354)
....... ..................+++++|.+.+....... ......+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2211110 01111111222233456789999999998765431 1223567899999999
Q ss_pred hhhccCcHHHHHHHHhhCCCCCcEEEEEeeCc
Q 018574 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (354)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~ 217 (354)
++..... +..+.. .....+++|||||.
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9865441 334444 46777999999985
No 121
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.79 E-value=1.2e-16 Score=145.99 Aligned_cols=89 Identities=8% Similarity=0.022 Sum_probs=65.7
Q ss_pred HHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhC----CCCcEEEEccccccCC
Q 018574 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS----GTTRVLITTDVWARGL 336 (354)
Q Consensus 261 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T~~~~~Gi 336 (354)
+.+..++.. ..|+++|.+.|...++.+++.|+..-.....+.|+.+ .+...+++|++ |...||++|..+++|+
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 334444443 3479999999999999999999753223344445432 45667888887 4789999999999999
Q ss_pred Cc----------CCCcEEEecCCCCC
Q 018574 337 DV----------QQAILFFFLFLFCN 352 (354)
Q Consensus 337 di----------~~~~~Vi~~~~p~s 352 (354)
|+ ..+++||..-+|..
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~ 562 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFG 562 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCC
Confidence 99 35889999888853
No 122
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.79 E-value=7.7e-17 Score=137.59 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=187.6
Q ss_pred CCChHHHHHhHhhhh-cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 54 EKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~-~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
..+-|+|++-+...+ +|.++++...+|.|||..++..+..+.... ..||+||. ++...|++.++++...... +
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPA-svrftWa~al~r~lps~~p-i 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPA-SVRFTWAKALNRFLPSIHP-I 270 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecH-HHhHHHHHHHHHhcccccc-e
Confidence 456899999887655 578999999999999987776655554333 38999995 7778899999998755433 2
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEE
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~l 212 (354)
....++.+.-. .+.....|.|.+.+.+..+.. -+.-..+++||+||+|.+-+.. ....+.+...+.....++++
T Consensus 271 ~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEe
Confidence 22333322211 122235788888887754332 2223458999999999986554 33355555555566789999
Q ss_pred EeeCc----h---------------hHHHHHHhccCC---CeEEEecCCcc-----------------------cccCce
Q 018574 213 SATLP----H---------------EILEMTTKFMTD---PVKILVKRDEL-----------------------TLEGIK 247 (354)
Q Consensus 213 SaT~~----~---------------~~~~~~~~~~~~---~~~~~~~~~~~-----------------------~~~~~~ 247 (354)
|+|+. . +..++...|+.. +..+.+..... .++.-+
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKr 424 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKR 424 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99972 1 112222222221 11111111000 000001
Q ss_pred eEEEE-ecccc------------------------------------chHHHHHHHHhh------CCCCcEEEEcCchhh
Q 018574 248 QFFVA-VEREE------------------------------------WKFDTLCDLYDT------LTITQAVIFCNTKRK 284 (354)
Q Consensus 248 ~~~~~-~~~~~------------------------------------~~~~~l~~~l~~------~~~~~~lvf~~~~~~ 284 (354)
+.+.. .+... .|...+.+.+.. .++.|.+|||.....
T Consensus 425 r~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v 504 (689)
T KOG1000|consen 425 REVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV 504 (689)
T ss_pred eEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHH
Confidence 11111 11110 122333333322 234689999999999
Q ss_pred HHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCC-CCcE-EEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 285 VDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRV-LITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 285 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+.+...+.+.++....++|..+..+|....+.|+.. +..| +++..+.+.|+++..++.|+|..+|+|+
T Consensus 505 Ld~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 505 LDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred HHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 9999999999999999999999999999999999865 5665 4555889999999999999999999997
No 123
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.79 E-value=9.2e-17 Score=147.25 Aligned_cols=293 Identities=15% Similarity=0.136 Sum_probs=185.3
Q ss_pred CChHHHHHhHhhhhc----------CCcEEEEcCCCCchhhHhHHHHhhccccCCC----ceeEEEEcCCHHHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIK----------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSR----EVQALILSPTRELATQTEKV 120 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~lil~p~~~l~~q~~~~ 120 (354)
.++|||++.+.-+-+ ...+|+.-.+|+|||+..+..+...+..... -.+.|||+| .+|+..|+.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 569999999976543 2367899999999998777766665554432 157899999 5899999999
Q ss_pred HHHhccCcCeEEEEEeCCcch-HHhHH------hhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcH
Q 018574 121 ILAIGDFINIQAHACVGGKSV-GEDIR------KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (354)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~ 193 (354)
+.++.....+....+.+..+. ..... .-.....|.+.+.+.+.+... .+....++++|+||.|.+-+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~~-- 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNSD-- 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccchh--
Confidence 999886556777777776653 11000 011125677888888865544 4445678999999999975443
Q ss_pred HHHHHHHhhCCCCCcEEEEEeeCchh-HHHHHHhc-------c----------CCCeE----------------------
Q 018574 194 DQIYDVYRYLPPDLQVVLISATLPHE-ILEMTTKF-------M----------TDPVK---------------------- 233 (354)
Q Consensus 194 ~~~~~i~~~~~~~~~~i~lSaT~~~~-~~~~~~~~-------~----------~~~~~---------------------- 233 (354)
..+...+..+ ...+.+++|+|+-+. +.+...-+ + ..++.
T Consensus 393 s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 2333334444 455568899997432 11111100 0 00000
Q ss_pred --------EEe-cCCcccccCceeEEEEeccccchHHHHHHHHhh-----------------------------------
Q 018574 234 --------ILV-KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT----------------------------------- 269 (354)
Q Consensus 234 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----------------------------------- 269 (354)
... ......++....+...+.....+...+.+++..
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 000 001112333444444444443232222222221
Q ss_pred -----------------------------------------CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCH
Q 018574 270 -----------------------------------------LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (354)
Q Consensus 270 -----------------------------------------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (354)
....++.+..|.+...+.+....+-.|..+..++|.++.
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~ 631 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSI 631 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCch
Confidence 011245555566666666666666669999999999999
Q ss_pred HHHHHHHHHHhCC--CCcEEE-EccccccCCCcCCCcEEEecCCCCCC
Q 018574 309 KERDAIMGEFRSG--TTRVLI-TTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 309 ~~r~~~~~~f~~g--~~~vlv-~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+|..+++.|++- ...|++ ++-+.++||++-+++.||.||.+|||
T Consensus 632 ~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNP 679 (776)
T KOG0390|consen 632 KQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNP 679 (776)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCc
Confidence 9999999999864 335654 56899999999999999999999997
No 124
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.79 E-value=5.1e-17 Score=151.44 Aligned_cols=306 Identities=15% Similarity=0.183 Sum_probs=204.6
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
.+.....++...+.+....-...+..+.++++.+.+++.++|.|.||+|||+.....+++....++...++++--|++--
T Consensus 152 ~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIs 231 (924)
T KOG0920|consen 152 RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRIS 231 (924)
T ss_pred hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHH
Confidence 34433444555555554444477999999999999999999999999999999998888877665566677777798876
Q ss_pred HHHHHHHHHH-hccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh-ccC
Q 018574 114 ATQTEKVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRG 191 (354)
Q Consensus 114 ~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~-~~~ 191 (354)
|..++++..+ .+...+-.+..-....+. ......+.++|.+.|++.+.. .-.+....+||+||+|.-. ..+
T Consensus 232 AIsvAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~D 304 (924)
T KOG0920|consen 232 AISVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTD 304 (924)
T ss_pred HHHHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcc
Confidence 7666666543 233333223222211111 223378999999999998876 4445788999999999743 334
Q ss_pred cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccc----------------cCceeEE-----
Q 018574 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL----------------EGIKQFF----- 250 (354)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~----- 250 (354)
|.-.+.+.+-..+++.++++||||+..+ ..+.|++....+.+....... ....+..
T Consensus 305 flLi~lk~lL~~~p~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~ 381 (924)
T KOG0920|consen 305 FLLILLKDLLPRNPDLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERS 381 (924)
T ss_pred cHHHHHHHHhhhCCCceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccC
Confidence 4444444444445899999999998743 223333333233322211100 0000000
Q ss_pred ------EEeccccchHHHHHHHH----hhCCCCcEEEEcCchhhHHHHHHHHhcC-------CCeEEEeecCCCHHHHHH
Q 018574 251 ------VAVEREEWKFDTLCDLY----DTLTITQAVIFCNTKRKVDWLTEKMRGY-------NFTVSSMHGDMPQKERDA 313 (354)
Q Consensus 251 ------~~~~~~~~~~~~l~~~l----~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~ 313 (354)
..+...+-..+.+..++ .....+.+|||.+...+...+.+.|... ..-+..+|+.++..++..
T Consensus 382 ~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~ 461 (924)
T KOG0920|consen 382 QLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQA 461 (924)
T ss_pred ccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHH
Confidence 00000011223333333 3333578999999999999999999642 356778999999999999
Q ss_pred HHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 314 IMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 314 ~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
+++.-..|..+|+++|++++.++.|+++-.||..+.
T Consensus 462 VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~ 497 (924)
T KOG0920|consen 462 VFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGL 497 (924)
T ss_pred hcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCe
Confidence 999888999999999999999999999999998664
No 125
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.78 E-value=7.3e-18 Score=151.11 Aligned_cols=293 Identities=14% Similarity=0.196 Sum_probs=188.5
Q ss_pred CChHHHHHhHhhhh----cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
++.+||.--++|+. ++-+.|+.-.+|.|||...+..+......+.+|+ -|||||+..| +.|..++.+++.. +
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gp-HLVVvPsSTl-eNWlrEf~kwCPs--l 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGP-HLVVVPSSTL-ENWLREFAKWCPS--L 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCC-cEEEecchhH-HHHHHHHHHhCCc--e
Confidence 68999999888865 2557799999999999766554443334444444 7999998665 5578888888865 5
Q ss_pred EEEEEeCCcchHHhHHhh----cCCCeEEEeCcHHHHHHH-hcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCC
Q 018574 131 QAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~-~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~ 205 (354)
++...+|....+.+.... ..+++|+++|+.....-- .+..+...+|+++|+||.|.+-+.. ...+..+... +
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I--~ 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI--N 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc--c
Confidence 555566665444443322 236899999986553211 1223445688999999999986654 3344444443 3
Q ss_pred CCcEEEEEeeCchh-HHHHHHhc---c-----------------------------------------------------
Q 018574 206 DLQVVLISATLPHE-ILEMTTKF---M----------------------------------------------------- 228 (354)
Q Consensus 206 ~~~~i~lSaT~~~~-~~~~~~~~---~----------------------------------------------------- 228 (354)
....+++|+||-+. +.++++.+ +
T Consensus 552 An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~q 631 (941)
T KOG0389|consen 552 ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQ 631 (941)
T ss_pred ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55678999997332 11111100 0
Q ss_pred ------CCCeEEEec---CCcc-------------------c--ccC--c--------------eeEEEE----------
Q 018574 229 ------TDPVKILVK---RDEL-------------------T--LEG--I--------------KQFFVA---------- 252 (354)
Q Consensus 229 ------~~~~~~~~~---~~~~-------------------~--~~~--~--------------~~~~~~---------- 252 (354)
.....+... .... . ..+ + +.+|..
T Consensus 632 VL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~i 711 (941)
T KOG0389|consen 632 VLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRI 711 (941)
T ss_pred HHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHH
Confidence 000000000 0000 0 000 0 000000
Q ss_pred ----------------------------------------ec----cccchHHHHHHHHhhC--CCCcEEEEcCchhhHH
Q 018574 253 ----------------------------------------VE----REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVD 286 (354)
Q Consensus 253 ----------------------------------------~~----~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~ 286 (354)
+. ....|+..|..++... .+++++||.+.....+
T Consensus 712 l~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLD 791 (941)
T KOG0389|consen 712 LNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLD 791 (941)
T ss_pred hCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHH
Confidence 00 0000233333333322 2368999999999999
Q ss_pred HHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCC-Cc-EEEEccccccCCCcCCCcEEEecCCCCCCC
Q 018574 287 WLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT-TR-VLITTDVWARGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 287 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
-+...|..+++....++|.+.-.+|..++.+|..++ +. .|++|.+.+-|||+..+++||.+|+..|||
T Consensus 792 ILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~ 861 (941)
T KOG0389|consen 792 ILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY 861 (941)
T ss_pred HHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCc
Confidence 999999999999999999999999999999998764 44 488899999999999999999999999986
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=9.7e-18 Score=156.34 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=81.4
Q ss_pred chHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Q 018574 258 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (354)
Q Consensus 258 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 335 (354)
.+...+...+... .+.|+||||+|++.++.++..|+..++++..+|+ .+.+|+..+..|..+...|+|||+++++|
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 3777777777543 5679999999999999999999999999999997 47789999999999999999999999999
Q ss_pred CCcC---CCc-----EEEecCCCCCC
Q 018574 336 LDVQ---QAI-----LFFFLFLFCNV 353 (354)
Q Consensus 336 idi~---~~~-----~Vi~~~~p~s~ 353 (354)
+||+ .+. +||..+.|.|.
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~ 685 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESR 685 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchH
Confidence 9999 454 34888888864
No 127
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=2.7e-16 Score=152.78 Aligned_cols=81 Identities=10% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCC--eEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC--CcEEEe
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNF--TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ--AILFFF 346 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~--~~~Vi~ 346 (354)
..++++|+++|.+..+.+++.|+.... ...++.-+++...|.++++.|++++..||++|..+++|+|+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975422 1333443444456788999999998999999999999999996 488999
Q ss_pred cCCCC
Q 018574 347 LFLFC 351 (354)
Q Consensus 347 ~~~p~ 351 (354)
..+|.
T Consensus 831 ~kLPF 835 (928)
T PRK08074 831 VRLPF 835 (928)
T ss_pred ecCCC
Confidence 99886
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=4.6e-17 Score=151.25 Aligned_cols=272 Identities=16% Similarity=0.192 Sum_probs=178.2
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.+++.|. +-.+.-.+.-+..+.||.|||+++.+|++.....+. .+-+++|+.-|+.|-++.+..+...+++++..
T Consensus 82 ~~ydVQl--iGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQL--IGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHH--HhhhHhccCccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 4555554 444444566788999999999999998887666554 48999999999999999999999999999999
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC------CccCCCccEEEEecchhhhccC----------------
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLSRG---------------- 191 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~~~~---------------- 191 (354)
+.++.+..+....+. ++|+++|...+ .++++.. ......+.++||||+|+++-..
T Consensus 157 i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~ 234 (913)
T PRK13103 157 VTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSK 234 (913)
T ss_pred ECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchH
Confidence 888776655444443 89999999876 2333322 1223788999999999853111
Q ss_pred cHHHHHHHHhhC----------------------------------------------------C---------------
Q 018574 192 FKDQIYDVYRYL----------------------------------------------------P--------------- 204 (354)
Q Consensus 192 ~~~~~~~i~~~~----------------------------------------------------~--------------- 204 (354)
....+..+...+ .
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL 314 (913)
T PRK13103 235 LYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGL 314 (913)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHH
Confidence 000111111100 0
Q ss_pred -------CC-------------------------------------------------------------CcEEEEEeeC
Q 018574 205 -------PD-------------------------------------------------------------LQVVLISATL 216 (354)
Q Consensus 205 -------~~-------------------------------------------------------------~~~i~lSaT~ 216 (354)
.+ .++.+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 394 (913)
T PRK13103 315 RAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTA 394 (913)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCC
Confidence 00 3566777777
Q ss_pred chhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh-h-CCCCcEEEEcCchhhHHHHHHHHhc
Q 018574 217 PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T-LTITQAVIFCNTKRKVDWLTEKMRG 294 (354)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~~~lvf~~~~~~~~~l~~~l~~ 294 (354)
..+..++...|-.+...+.........+.-...| ..... +...+.+-+. . ..+.|+||-+.|++.++.++..|++
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy--~t~~e-K~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~ 471 (913)
T PRK13103 395 DTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLVY--LTAEE-KYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKK 471 (913)
T ss_pred HHHHHHHHHHhCCCEEECCCCCCcccccCCCeEE--cCHHH-HHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 6665555555544433333222221111111121 12222 4555544444 2 2467999999999999999999999
Q ss_pred CCCeEEEeecCCCHHHHHHHHHHHhCC-CCcEEEEccccccCCCcC
Q 018574 295 YNFTVSSMHGDMPQKERDAIMGEFRSG-TTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 295 ~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 339 (354)
.+++..++++.....+ .+++. ..| ...|-|+|+++++|.||.
T Consensus 472 ~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIk 514 (913)
T PRK13103 472 EGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDIL 514 (913)
T ss_pred cCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEe
Confidence 9999988888744222 23333 456 567999999999999994
No 129
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.76 E-value=1.2e-17 Score=156.19 Aligned_cols=290 Identities=16% Similarity=0.147 Sum_probs=192.8
Q ss_pred CCChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 54 EKPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
.+++.||.+-+++++. ++++|+.-.+|.|||...+..+-.......-....|+|+|...+. .|..++..+. .
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh---h
Confidence 5899999999998775 789999999999999755554444333332223489999975554 5778888777 6
Q ss_pred eEEEEEeCCcchHHhHHhhc----C-----CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHH
Q 018574 130 IQAHACVGGKSVGEDIRKLE----H-----GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~----~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~ 200 (354)
+++...+|+....+.++.+. . ..+++++|.+.++.-- ..+..-.+.++++||||++-+.. ...+.. +
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~-~~l~~~-l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDE-SKLYES-L 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchH-HHHHHH-H
Confidence 88888888877666555432 1 3789999998875422 23334478999999999986443 222322 4
Q ss_pred hhCCCCCcEEEEEeeCchh-HHHHHHh--ccCCCeEEEec--------------------------------CCcccccC
Q 018574 201 RYLPPDLQVVLISATLPHE-ILEMTTK--FMTDPVKILVK--------------------------------RDELTLEG 245 (354)
Q Consensus 201 ~~~~~~~~~i~lSaT~~~~-~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~~~~ 245 (354)
..+. ....+++|+||-+. +.+++.. |+. |...... .-+..++.
T Consensus 521 ~~f~-~~~rllitgTPlQNsikEL~sLl~Fl~-P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~ 598 (1373)
T KOG0384|consen 521 NQFK-MNHRLLITGTPLQNSLKELWSLLHFLM-PGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPP 598 (1373)
T ss_pred HHhc-ccceeeecCCCccccHHHHHHHhcccC-CCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCC
Confidence 4443 23358889997542 2222211 110 0000000 00001111
Q ss_pred ceeEEEEecccc--------------------------------------------------c---------hHHHHHHH
Q 018574 246 IKQFFVAVEREE--------------------------------------------------W---------KFDTLCDL 266 (354)
Q Consensus 246 ~~~~~~~~~~~~--------------------------------------------------~---------~~~~l~~~ 266 (354)
-...+..+.... . ....+..+
T Consensus 599 k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~l 678 (1373)
T KOG0384|consen 599 KEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQAL 678 (1373)
T ss_pred CcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHH
Confidence 111111111000 0 00233333
Q ss_pred HhhC---------------CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhC---CCCcEEEE
Q 018574 267 YDTL---------------TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS---GTTRVLIT 328 (354)
Q Consensus 267 l~~~---------------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~ 328 (354)
++.. .++++|||.+-+...+-++++|..++++.-.++|....+-|...+..|.. ..+..|+|
T Consensus 679 I~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLS 758 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLS 758 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEe
Confidence 3322 23689999999999999999999999999999999999999999999975 45778999
Q ss_pred ccccccCCCcCCCcEEEecCCCCCC
Q 018574 329 TDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|.+.+-|||+..++.||.||--|||
T Consensus 759 TRAGGLGINLatADTVIIFDSDWNP 783 (1373)
T KOG0384|consen 759 TRAGGLGINLATADTVIIFDSDWNP 783 (1373)
T ss_pred cccCcccccccccceEEEeCCCCCc
Confidence 9999999999999999999999987
No 130
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=4.3e-16 Score=137.45 Aligned_cols=281 Identities=13% Similarity=0.195 Sum_probs=192.4
Q ss_pred CCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH-----hcc
Q 018574 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-----IGD 126 (354)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-----~~~ 126 (354)
.....+++-.+++.++..++-++|.|.||||||+..-..+... .-...+.++-+.-|.+.-+-.++.+..+ ++.
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~Ea-Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEA-GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhc-ccccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 4456788888999999999999999999999997655544433 3333444566666888766666555432 223
Q ss_pred CcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-C-cHHHHHHHHhhCC
Q 018574 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-G-FKDQIYDVYRYLP 204 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~-~~~~~~~i~~~~~ 204 (354)
..|..+..-...+ ...-+=+.|.++|++-+.. ..++..+++|||||||.-.-. + ....+..|.+. +
T Consensus 341 eVGYsIRFEdcTS----------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~-R 408 (902)
T KOG0923|consen 341 EVGYSIRFEDCTS----------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-R 408 (902)
T ss_pred ccceEEEeccccC----------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-C
Confidence 3343333222211 2256678999999886654 345678999999999974211 1 22344444443 4
Q ss_pred CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh---hCCCCcEEEEcCc
Q 018574 205 PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD---TLTITQAVIFCNT 281 (354)
Q Consensus 205 ~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~lvf~~~ 281 (354)
++.++++.|||+..+.. +.|+.+.-.+.+... +..+..+|...+..++....+..+++ ..+.+.+|||...
T Consensus 409 pdLKllIsSAT~DAekF---S~fFDdapIF~iPGR---RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltG 482 (902)
T KOG0923|consen 409 PDLKLLISSATMDAEKF---SAFFDDAPIFRIPGR---RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTG 482 (902)
T ss_pred CcceEEeeccccCHHHH---HHhccCCcEEeccCc---ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEecc
Confidence 78999999999976432 244444322222221 23456666666666655555555554 3455789999999
Q ss_pred hhhHHHHHHHHhcC---------CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 282 KRKVDWLTEKMRGY---------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 282 ~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
.++.+...+.|.++ .+-+..+++.++.+.+..+++--..|-.+|+++|+++++.+.|+++..||.-++-+
T Consensus 483 QeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 483 QEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred HHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 99888887777543 34577889999999999998888889999999999999999999999999877654
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.74 E-value=1.4e-16 Score=148.89 Aligned_cols=292 Identities=20% Similarity=0.232 Sum_probs=186.2
Q ss_pred CChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhccccCC------CceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
++|.||++-++|+.- +=+.|++..+|.|||+..+-.+......++ .....|||||+ +|+.-|..+++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 689999999998753 458899999999999877666554433321 12348999996 7888899999999
Q ss_pred ccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC
Q 018574 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (354)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~ 204 (354)
... +++....|+...+...+.-.+.++|+|++++.+.+-.. .+.-..+.++|+||-|-+-+.. ..+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~k--tkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchH--HHHHHHHHHHh
Confidence 877 44544555544444444334458999999988864322 1222467899999999875432 33344444443
Q ss_pred CCCcEEEEEeeCchh-HHHHHH----------------------------------------------------------
Q 018574 205 PDLQVVLISATLPHE-ILEMTT---------------------------------------------------------- 225 (354)
Q Consensus 205 ~~~~~i~lSaT~~~~-~~~~~~---------------------------------------------------------- 225 (354)
....+.+|+||.+. +.++++
T Consensus 1128 -a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 -ANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred -hcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33457889995321 011000
Q ss_pred ------------------------------hccCC---CeEEEecCCcccccC--------c-------eeEEEEecc--
Q 018574 226 ------------------------------KFMTD---PVKILVKRDELTLEG--------I-------KQFFVAVER-- 255 (354)
Q Consensus 226 ------------------------------~~~~~---~~~~~~~~~~~~~~~--------~-------~~~~~~~~~-- 255 (354)
.+... ......+........ + .+--....+
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00000 000000000000000 0 000000000
Q ss_pred ---------------------ccchHHHHHHHHhhC----------------CCCcEEEEcCchhhHHHHHHHHhcC---
Q 018574 256 ---------------------EEWKFDTLCDLYDTL----------------TITQAVIFCNTKRKVDWLTEKMRGY--- 295 (354)
Q Consensus 256 ---------------------~~~~~~~l~~~l~~~----------------~~~~~lvf~~~~~~~~~l~~~l~~~--- 295 (354)
...|+..|..++..= .+++++|||+-+...+-+.+.|.+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 012455666655421 2358999999999999888887543
Q ss_pred CCeEEEeecCCCHHHHHHHHHHHhCC-CCcEE-EEccccccCCCcCCCcEEEecCCCCCCC
Q 018574 296 NFTVSSMHGDMPQKERDAIMGEFRSG-TTRVL-ITTDVWARGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 296 ~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vl-v~T~~~~~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
.+....++|..++.+|.++.++|+++ .++|| ++|.+.+-|+|+.+++.|||++=-|||+
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPM 1427 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPM 1427 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCch
Confidence 33455899999999999999999999 67875 5568999999999999999999988874
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.74 E-value=2.6e-16 Score=145.62 Aligned_cols=276 Identities=18% Similarity=0.226 Sum_probs=179.3
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|.-. .+.-.+.-+..+.||.|||+++.+|+.-....+ ..+-|++++..|+.+-++.+..+...+|+
T Consensus 73 lG~-r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G---~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGL-RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNALTG---KGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCC-CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHhcC---CceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 455 566666544 344456789999999999999998886444433 34899999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHH-HHHhcC------CccCCCccEEEEecchhhhccC------------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEMLSRG------------ 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~------~~~~~~~~~vvvDE~h~~~~~~------------ 191 (354)
++..+.++.+..+....+ .++|+++|...+- ++++.. ......+.+.||||+|.++-..
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~ 224 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSK 224 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCc
Confidence 999888777765554444 3799999987552 333322 1123668899999999863111
Q ss_pred ----cHHHHHHHHhhCCCC-------------------------------------------------------------
Q 018574 192 ----FKDQIYDVYRYLPPD------------------------------------------------------------- 206 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~~------------------------------------------------------------- 206 (354)
.......+.+.+..+
T Consensus 225 ~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 304 (870)
T CHL00122 225 TNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR 304 (870)
T ss_pred cchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 111111111111100
Q ss_pred -------------------------------------------------------CcEEEEEeeCchhHHHHHHhccCCC
Q 018574 207 -------------------------------------------------------LQVVLISATLPHEILEMTTKFMTDP 231 (354)
Q Consensus 207 -------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~~ 231 (354)
.++.+||+|...+..++...|-.+.
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~v 384 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEV 384 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCE
Confidence 4678888888776556555554443
Q ss_pred eEEEecCCcccccCceeEEEEeccccchHH-HHHHHHhh-CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCH-
Q 018574 232 VKILVKRDELTLEGIKQFFVAVEREEWKFD-TLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ- 308 (354)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 308 (354)
..+....+....+ ....+.. ....+.. ++..+... ..+.|+||-|.|++..+.++..|.+.|++..++++....
T Consensus 385 v~IPtnkp~~R~d-~~d~v~~--t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~ 461 (870)
T CHL00122 385 VCIPTHRPMLRKD-LPDLIYK--DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENV 461 (870)
T ss_pred EECCCCCCcccee-CCCeEEe--CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccc
Confidence 3332222211111 1111111 2222333 33333433 345699999999999999999999999999999987422
Q ss_pred HHHHHHHHHHhCC-CCcEEEEccccccCCCcC
Q 018574 309 KERDAIMGEFRSG-TTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 309 ~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 339 (354)
..-.+++.. .| ...|-|+|+++++|.||.
T Consensus 462 ~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 462 RRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 222334443 45 567999999999999984
No 133
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.72 E-value=6.8e-15 Score=136.72 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=84.6
Q ss_pred hHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Q 018574 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (354)
Q Consensus 259 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 336 (354)
+++.+...+... .+.+++|||++++.++.+++.|.+.|+.+..+|++++..+|.++++.|+.|++.|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 555666655543 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcEEEecC-----CCCC
Q 018574 337 DVQQAILFFFLF-----LFCN 352 (354)
Q Consensus 337 di~~~~~Vi~~~-----~p~s 352 (354)
|+|++++||++| .|.|
T Consensus 507 DiP~v~lVvi~DadifG~p~~ 527 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRS 527 (655)
T ss_pred eeCCCcEEEEeCcccccCCCC
Confidence 999999999998 6766
No 134
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.4e-15 Score=140.79 Aligned_cols=273 Identities=16% Similarity=0.180 Sum_probs=177.5
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.|++.|. +-.+.-.+.-+..+.||.|||+++.+|++-....++. +-||+++.-|+.+-++.+..+...+|+++..
T Consensus 85 r~ydVQl--iGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gkg---VhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQL--IGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKG---VHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhHH--HhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCC---eEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 4555554 4444446678899999999999999888876665544 8999999999999999999999999999998
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHH-----HHHHhc--CCccCCCccEEEEecchhhhccC----------------
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-----CDMIKR--KTLRTRAIKLLVLDESDEMLSRG---------------- 191 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l-----~~~~~~--~~~~~~~~~~vvvDE~h~~~~~~---------------- 191 (354)
..++.+..+.. ....++|+++|+..| .+.+.. .......+.+.||||+|+++-..
T Consensus 160 i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~ 237 (939)
T PRK12902 160 IQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQE 237 (939)
T ss_pred ECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchH
Confidence 87766554433 334689999999877 333221 22334678999999999863111
Q ss_pred cHHHHHHHHhhCCC--------C---------------------------------------------------------
Q 018574 192 FKDQIYDVYRYLPP--------D--------------------------------------------------------- 206 (354)
Q Consensus 192 ~~~~~~~i~~~~~~--------~--------------------------------------------------------- 206 (354)
.......+...+.. +
T Consensus 238 ~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYi 317 (939)
T PRK12902 238 KYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYI 317 (939)
T ss_pred HHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEE
Confidence 11111111111110 0
Q ss_pred ---------------------------------------------------------CcEEEEEeeCchhHHHHHHhccC
Q 018574 207 ---------------------------------------------------------LQVVLISATLPHEILEMTTKFMT 229 (354)
Q Consensus 207 ---------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~ 229 (354)
.++.+||+|...+..++.+.|-.
T Consensus 318 V~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l 397 (939)
T PRK12902 318 VRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKL 397 (939)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCC
Confidence 46677777776655555555444
Q ss_pred CCeEEEecCCcccccCceeEEEEeccccchHHHHHHHH-hh-CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCC
Q 018574 230 DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMP 307 (354)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 307 (354)
+...+...............|. ....+...+.+-+ .. ..+.|+||-+.|++.++.++..|.+.|+++.++++.-.
T Consensus 398 ~Vv~IPTnkP~~R~d~~d~vy~---t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~ 474 (939)
T PRK12902 398 EVTVIPTNRPRRRQDWPDQVYK---TEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPE 474 (939)
T ss_pred cEEEcCCCCCeeeecCCCeEEc---CHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCc
Confidence 4333332222221111111211 1122444444433 33 34679999999999999999999999999999998732
Q ss_pred H-HHHHHHHHHHhCC-CCcEEEEccccccCCCcC
Q 018574 308 Q-KERDAIMGEFRSG-TTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 308 ~-~~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~ 339 (354)
. +.-.+++.. .| ...|-|+|+++++|.||.
T Consensus 475 ~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 475 NVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred chHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 2 222334443 45 467999999999999985
No 135
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=6e-16 Score=132.01 Aligned_cols=298 Identities=14% Similarity=0.179 Sum_probs=195.1
Q ss_pred CcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
..+.++.|...+.++...+.+++..-...|.++.+.++.+.+++-+++.+.||+|||...-.+.+....... ..+...
T Consensus 20 ~~k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CT 97 (699)
T KOG0925|consen 20 NAKAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACT 97 (699)
T ss_pred hhhhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeec
Confidence 334489999999999999999997766889999999999999999999999999999988888877665543 224555
Q ss_pred cCCHHHHHHHHHHHHH-----hccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEe
Q 018574 108 SPTRELATQTEKVILA-----IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLD 182 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvD 182 (354)
-|.+.-+-+++.+... ++...|..+..-.+..+ ..-+-++|.++|++......+ +.++++||+|
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~----------~T~Lky~tDgmLlrEams~p~-l~~y~viiLD 166 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSP----------NTLLKYCTDGMLLREAMSDPL-LGRYGVIILD 166 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCCh----------hHHHHHhcchHHHHHHhhCcc-cccccEEEec
Confidence 5887766666665433 22222222211111110 012224677777665544333 4689999999
Q ss_pred cchhh--hccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch-
Q 018574 183 ESDEM--LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK- 259 (354)
Q Consensus 183 E~h~~--~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 259 (354)
|+|.- ........++.+.... ++.+++.+|||+..... +.++.++-.+.+.. .. ....+|..-...++-
T Consensus 167 eahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~Kf---q~yf~n~Pll~vpg--~~--PvEi~Yt~e~erDylE 238 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAEKF---QRYFGNAPLLAVPG--TH--PVEIFYTPEPERDYLE 238 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchHHH---HHHhCCCCeeecCC--CC--ceEEEecCCCChhHHH
Confidence 99973 2222445666666665 59999999999865433 34555443333332 11 122244433333322
Q ss_pred --HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC---------CCeEEEeecCCCHHHHHHHHHHHhC---C--CC
Q 018574 260 --FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY---------NFTVSSMHGDMPQKERDAIMGEFRS---G--TT 323 (354)
Q Consensus 260 --~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~---g--~~ 323 (354)
+..+..+......|.++||....++.+...+.+.+. ..++..++ ++++..+++-... | ..
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 334444444556788999999999998888877632 34566666 3444444443321 2 35
Q ss_pred cEEEEccccccCCCcCCCcEEEecCCC
Q 018574 324 RVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 324 ~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
+|+|+|++++..+.++.+.+||.-++-
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~ 341 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFS 341 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchh
Confidence 799999999999999999999998764
No 136
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.1e-15 Score=137.97 Aligned_cols=288 Identities=14% Similarity=0.146 Sum_probs=187.4
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|. .|++.|.-.--.+. +.-+..+.||-|||+++.+|++-....++. +-|++.+.-|+..-++.+..+...+|+
T Consensus 75 lG~-r~ydVQliGglvLh--~G~IAEMkTGEGKTLvAtLpayLnAL~Gkg---VhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILD--LGSVAEMKTGEGKTITSIAPVYLNALTGKG---VIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred hCC-CcCchHHHHHHHHh--cCCeeeecCCCCccHHHHHHHHHHHhcCCc---eEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 355 56666655443333 446899999999999999888755555433 788888899999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC------CccCCCccEEEEecchhhhccC------------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLSRG------------ 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~~~~------------ 191 (354)
++.....+....+....+ .++|+++|...| .++++.. ....+.+.+.||||+|.++-..
T Consensus 149 svG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~ 226 (925)
T PRK12903 149 SVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQS 226 (925)
T ss_pred ceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCc
Confidence 998887765555444433 489999998776 3444432 1223678899999999863111
Q ss_pred ----cHHHHHHHHhhCCCC-------------------------------------------------------------
Q 018574 192 ----FKDQIYDVYRYLPPD------------------------------------------------------------- 206 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~~------------------------------------------------------------- 206 (354)
....+..+...+...
T Consensus 227 ~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~ 306 (925)
T PRK12903 227 NDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVR 306 (925)
T ss_pred cchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 112222222222100
Q ss_pred -------------------------------------------------------CcEEEEEeeCchhHHHHHHhccCCC
Q 018574 207 -------------------------------------------------------LQVVLISATLPHEILEMTTKFMTDP 231 (354)
Q Consensus 207 -------------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~~ 231 (354)
.++.+||+|...+..++.+.|-.+.
T Consensus 307 dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~V 386 (925)
T PRK12903 307 DGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRV 386 (925)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCE
Confidence 4677788887666666665554443
Q ss_pred eEEEecCCcccccCceeEEEEeccccchHHHHHHHHh-h-CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHH
Q 018574 232 VKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQK 309 (354)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 309 (354)
..+....+....+.....|. .... +...+.+.+. . ..+.|+||.|.|++.++.++..|.+.|++..++++.....
T Consensus 387 v~IPTnkP~~R~D~~d~iy~--t~~~-K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~ 463 (925)
T PRK12903 387 NVVPTNKPVIRKDEPDSIFG--TKHA-KWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAR 463 (925)
T ss_pred EECCCCCCeeeeeCCCcEEE--cHHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhh
Confidence 33332222111111111222 1222 4444444333 2 3467999999999999999999999999999999874322
Q ss_pred HHHHHHHHHhCC-CCcEEEEccccccCCCcCCCc--------EEEecCCCCC
Q 018574 310 ERDAIMGEFRSG-TTRVLITTDVWARGLDVQQAI--------LFFFLFLFCN 352 (354)
Q Consensus 310 ~r~~~~~~f~~g-~~~vlv~T~~~~~Gidi~~~~--------~Vi~~~~p~s 352 (354)
+ .+++. ..| ...|.|+|+++++|.||.--. |||....|+|
T Consensus 464 E-A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheS 512 (925)
T PRK12903 464 E-AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAES 512 (925)
T ss_pred H-HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCch
Confidence 2 22333 456 567999999999999997333 8888887776
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.7e-15 Score=135.05 Aligned_cols=281 Identities=18% Similarity=0.192 Sum_probs=178.9
Q ss_pred HHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC---CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 58 AIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 58 ~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.-.+++++++..+.-+||+|.||||||+..-..++..=.... .+.-+=|.-|++.-+..++++...-...++-.+..
T Consensus 259 aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 259 AEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 344578888888999999999999999766666554433222 12235556688866666655543222122333322
Q ss_pred Ee-CCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-----CcHHHHHHHHhhCCC---
Q 018574 135 CV-GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-----GFKDQIYDVYRYLPP--- 205 (354)
Q Consensus 135 ~~-~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-----~~~~~~~~i~~~~~~--- 205 (354)
.. -+. .....+.|-+.|.+.|++.+++ .+.+.+++.||+||||.-.-. +....+..+......
T Consensus 339 qIRfd~-------ti~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 339 QIRFDG-------TIGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred EEEecc-------ccCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 11 111 1223478999999999998886 555789999999999973211 111222222233323
Q ss_pred ---CCcEEEEEeeCchhHHHHHHhccCCCe-EEEecCCcccccCceeEEEEeccccc---hHHHHHHHHhhCCCCcEEEE
Q 018574 206 ---DLQVVLISATLPHEILEMTTKFMTDPV-KILVKRDELTLEGIKQFFVAVEREEW---KFDTLCDLYDTLTITQAVIF 278 (354)
Q Consensus 206 ---~~~~i~lSaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~lvf 278 (354)
..++|+||||+.-....-.+.++..+- .+.++... ..+..++......++ ......++.+..+.|-+|||
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ---fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVF 487 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ---FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVF 487 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc---CceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 678999999996543333333333222 22222221 122233333333332 34455566778888999999
Q ss_pred cCchhhHHHHHHHHhcCC--------------------------------------------------------------
Q 018574 279 CNTKRKVDWLTEKMRGYN-------------------------------------------------------------- 296 (354)
Q Consensus 279 ~~~~~~~~~l~~~l~~~~-------------------------------------------------------------- 296 (354)
+...+++.++.+.|++.-
T Consensus 488 vTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa 567 (1172)
T KOG0926|consen 488 VTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAA 567 (1172)
T ss_pred EeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhh
Confidence 999999999999998630
Q ss_pred -------------------------------------CeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC
Q 018574 297 -------------------------------------FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 297 -------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
..|..+++-++.+++.+++..-..|..-++|+|+++++.+.||
T Consensus 568 ~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIP 647 (1172)
T KOG0926|consen 568 FNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIP 647 (1172)
T ss_pred hhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccC
Confidence 0044555556777777777777778888999999999999999
Q ss_pred CCcEEEecCC
Q 018574 340 QAILFFFLFL 349 (354)
Q Consensus 340 ~~~~Vi~~~~ 349 (354)
+++.||..+.
T Consensus 648 gIkYVVD~Gr 657 (1172)
T KOG0926|consen 648 GIKYVVDCGR 657 (1172)
T ss_pred CeeEEEeccc
Confidence 9999998764
No 138
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.69 E-value=2e-15 Score=138.49 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=115.8
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhcc-CcCeEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD-FINIQAH 133 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~-~~~~~~~ 133 (354)
.|-.||.+....+=+++..+|.|||.+|||++....+-..+.... ...++++.|+++|+.|.......... ..-....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-SDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-CCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 688899999999888999999999999999877777666665544 34599999999999999988776442 2222333
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc---CCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~---~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 210 (354)
.+.|.-..+.... .-.|+|+|+-|+.+..++.. ......+++++|+||+|.+....-...+..++... .++++
T Consensus 590 sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 3333333332222 22499999999999887765 34445789999999999997665445555555543 45689
Q ss_pred EEEeeCch
Q 018574 211 LISATLPH 218 (354)
Q Consensus 211 ~lSaT~~~ 218 (354)
++|||..+
T Consensus 666 ~LSATigN 673 (1330)
T KOG0949|consen 666 VLSATIGN 673 (1330)
T ss_pred EEecccCC
Confidence 99999854
No 139
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=9.4e-15 Score=129.54 Aligned_cols=277 Identities=13% Similarity=0.167 Sum_probs=180.5
Q ss_pred CCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH-h----cc
Q 018574 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-I----GD 126 (354)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~----~~ 126 (354)
.+......+.+++..+..++-++|.+.||||||+.....++..=+.. .+ -+-+.-|.+.-+..++.+... . +.
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~-~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD-NG-MIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc-CC-eeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 34466778888888888999999999999999987665554432222 11 234444888777777766543 3 22
Q ss_pred CcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-C-cHHHHHHHHhhCC
Q 018574 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-G-FKDQIYDVYRYLP 204 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~-~~~~~~~i~~~~~ 204 (354)
..|+.+..-... .....|=+.|.+.|++..... -.+.++++||+||||.-.-+ + ....++.++.. +
T Consensus 431 ~VGYsIRFEdvT----------~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar-R 498 (1042)
T KOG0924|consen 431 TVGYSIRFEDVT----------SEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-R 498 (1042)
T ss_pred ccceEEEeeecC----------CCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh-h
Confidence 233333221111 112577889999988754432 23568999999999974322 1 12233333333 3
Q ss_pred CCCcEEEEEeeCchhHHHHHHhccC-CCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh---hCCCCcEEEEcC
Q 018574 205 PDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD---TLTITQAVIFCN 280 (354)
Q Consensus 205 ~~~~~i~lSaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~lvf~~ 280 (354)
.+.++|..|||+..... ..|++ -|.. .+.... ..+...|...+.+++....+...+. ....|.++||..
T Consensus 499 rdlKliVtSATm~a~kf---~nfFgn~p~f-~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmt 571 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDAQKF---SNFFGNCPQF-TIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMT 571 (1042)
T ss_pred ccceEEEeeccccHHHH---HHHhCCCcee-eecCCc---cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecC
Confidence 58899999999976432 24444 3432 222221 1234444444444444444444443 224478999999
Q ss_pred chhhHHHHHHHHh----cC------CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 281 TKRKVDWLTEKMR----GY------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 281 ~~~~~~~l~~~l~----~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
..+..+.....+. +. ++.+..+++-++.+-+.++++....|..+++|+|+++++.+.+|++.+||.-++
T Consensus 572 GqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 572 GQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 8877665554443 22 567889999999999899988888899999999999999999999999998765
No 140
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.66 E-value=9.6e-14 Score=131.01 Aligned_cols=84 Identities=15% Similarity=0.305 Sum_probs=62.8
Q ss_pred HHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC-CCeEEEeecCCCHHHHHHHHHHHh----CCCCcEEEEccccccCCC
Q 018574 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFR----SGTTRVLITTDVWARGLD 337 (354)
Q Consensus 263 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~T~~~~~Gid 337 (354)
+..++. ..+.++|+++|.+..++++..|... +.. ....|. ..+..+++.|+ .++..||++|..+++|+|
T Consensus 527 i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD 600 (697)
T PRK11747 527 LPELLE--KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLD 600 (697)
T ss_pred HHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccccccc
Confidence 334444 3456999999999999999999743 333 334443 34667776665 467889999999999999
Q ss_pred cCC--CcEEEecCCCCC
Q 018574 338 VQQ--AILFFFLFLFCN 352 (354)
Q Consensus 338 i~~--~~~Vi~~~~p~s 352 (354)
+|+ +++||...+|-.
T Consensus 601 ~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 601 LPGDYLTQVIITKIPFA 617 (697)
T ss_pred CCCCceEEEEEEcCCCC
Confidence 985 789999999853
No 141
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=5.7e-14 Score=133.55 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=63.6
Q ss_pred CCCCCChHHHHHhHhhhh----cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 51 YGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
+.|..++|.|.+.+..+. .+++.++.+|||+|||.+.+.+++++........+++|++.|.+-..|..+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 567667999998887655 488999999999999999999999887655444689999999999999999998843
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.64 E-value=2.8e-14 Score=135.50 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=65.6
Q ss_pred HHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCe-EEEeecCCCHHHHHHHHHHHhCCCC-cEEEEccccccCCCc
Q 018574 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDMPQKERDAIMGEFRSGTT-RVLITTDVWARGLDV 338 (354)
Q Consensus 261 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~T~~~~~Gidi 338 (354)
..+..++...+ ++++||++|.+.++.+++.++..... .....|.. .+.+.++.|+++.- .++|++..+++|+|+
T Consensus 469 ~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~ 544 (654)
T COG1199 469 AYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDF 544 (654)
T ss_pred HHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccC
Confidence 33444444444 59999999999999999999876542 33444443 34478888887655 899999999999999
Q ss_pred CCC--cEEEecCCCC
Q 018574 339 QQA--ILFFFLFLFC 351 (354)
Q Consensus 339 ~~~--~~Vi~~~~p~ 351 (354)
|+- ++||.+++|-
T Consensus 545 ~g~~l~~vvI~~lPf 559 (654)
T COG1199 545 PGDALRLVVIVGLPF 559 (654)
T ss_pred CCCCeeEEEEEecCC
Confidence 854 7899999885
No 143
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.61 E-value=2.8e-14 Score=126.97 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhC--CCCcEEEEc-cccccCCCcCCCcEEEe
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS--GTTRVLITT-DVWARGLDVQQAILFFF 346 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T-~~~~~Gidi~~~~~Vi~ 346 (354)
....+++|..+-.....-+...+.+.|.....++|....++|..+++.|.. |..+|++-. .+.+.|+|+-..+|+|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 345789999998888899999999999999999999999999999999974 556776655 88999999999999999
Q ss_pred cCCCCCC
Q 018574 347 LFLFCNV 353 (354)
Q Consensus 347 ~~~p~s~ 353 (354)
+|+.||+
T Consensus 824 vDlHWNP 830 (901)
T KOG4439|consen 824 VDLHWNP 830 (901)
T ss_pred EecccCH
Confidence 9999996
No 144
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.57 E-value=2.5e-13 Score=121.20 Aligned_cols=83 Identities=13% Similarity=0.234 Sum_probs=76.7
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcE-EEEccccccCCCcCCCcEEEecCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRV-LITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v-lv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
.++++|+|++-.+..+-+.++|...++....++|.....+|..++++|+..++.| |++|.+.+-||++..++.|||||-
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 3579999999999999999999999999999999999999999999999876665 778999999999999999999999
Q ss_pred CCCC
Q 018574 350 FCNV 353 (354)
Q Consensus 350 p~s~ 353 (354)
-|||
T Consensus 1123 DWNP 1126 (1185)
T KOG0388|consen 1123 DWNP 1126 (1185)
T ss_pred CCCc
Confidence 9886
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=6.6e-14 Score=121.61 Aligned_cols=241 Identities=16% Similarity=0.169 Sum_probs=154.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
++-++-.|||.||||.-++ +++...+ ..++.-|.+-|+..+++++++.+ +.+..++|.......-. .
T Consensus 191 RkIi~H~GPTNSGKTy~AL----qrl~~ak---sGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRAL----QRLKSAK---SGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred heEEEEeCCCCCchhHHHH----HHHhhhc---cceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--C
Confidence 3457788999999996544 3443333 37999999999999999998776 77777776543322111 2
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHH-HHhhCCCCCcEEEEEeeCchhHHHHHHhcc
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD-VYRYLPPDLQVVLISATLPHEILEMTTKFM 228 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~-i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~ 228 (354)
.++..+-+|.++.. ....+++.|+||++.|.+++-+-.+.. ++........+.+ .+.+..+.+..+
T Consensus 258 ~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i~ 324 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKIL 324 (700)
T ss_pred CcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHHH
Confidence 34677777876541 124678999999999987653222222 2222112222221 122333333333
Q ss_pred CCCeEEEecCCcccccCc-eeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCe-EEEeecCC
Q 018574 229 TDPVKILVKRDELTLEGI-KQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDM 306 (354)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 306 (354)
... .+.+ ...|..+.+-. ..+.+..-+.....|.++| |-|++....+...+.+.+.. +.+++|.+
T Consensus 325 k~T-----------Gd~vev~~YeRl~pL~-v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsL 391 (700)
T KOG0953|consen 325 KMT-----------GDDVEVREYERLSPLV-VEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSL 391 (700)
T ss_pred hhc-----------CCeeEEEeecccCcce-ehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCC
Confidence 211 0111 12222222221 2223333444444455554 55678888899999887665 99999999
Q ss_pred CHHHHHHHHHHHhC--CCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 307 PQKERDAIMGEFRS--GTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 307 ~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
+++.|.+.-..|++ ++.+|||+|+++++|+|+ +++.|||+++-
T Consensus 392 PPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~ 436 (700)
T KOG0953|consen 392 PPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLI 436 (700)
T ss_pred CCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecc
Confidence 99999999999987 889999999999999999 59999998874
No 146
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.54 E-value=1.5e-12 Score=111.79 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=72.7
Q ss_pred CcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCC-CCcEEEEc-cccccCCCcCCCcEEEecCCC
Q 018574 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG-TTRVLITT-DVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T-~~~~~Gidi~~~~~Vi~~~~p 350 (354)
-|.|||.+.....+-+.-.|.+.|+.|+-+.|+|++..|...++.|.++ +..|++.+ .+.+.-+|+..+.+|+++|.=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4799999999999999999999999999999999999999999999986 45565544 899999999999999999987
Q ss_pred CCC
Q 018574 351 CNV 353 (354)
Q Consensus 351 ~s~ 353 (354)
||+
T Consensus 719 WNp 721 (791)
T KOG1002|consen 719 WNP 721 (791)
T ss_pred ccH
Confidence 765
No 147
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.52 E-value=5.3e-14 Score=129.74 Aligned_cols=292 Identities=16% Similarity=0.172 Sum_probs=183.2
Q ss_pred CChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.+.+||.+.+++... +-+.|+.-.+|.|||...+..+.+.+.........||+||...|.. |..++..+... +
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS--v 470 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS--V 470 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccc--e
Confidence 789999999998775 3478999999999998887777776655444445899999988776 66667666533 3
Q ss_pred EEEEEeCCcchHHhHH--hhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCc
Q 018574 131 QAHACVGGKSVGEDIR--KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~ 208 (354)
......|......... ......+|+++|.+.+.. ....+.--++.++||||.|+|-... ..+...+........
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~~q~ 546 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYRAQR 546 (1157)
T ss_pred eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhccccchh
Confidence 3333344333222211 122458999999887754 1122233467899999999985432 122222332223444
Q ss_pred EEEEEeeCchhHHH----HH--------------Hhc-------------------------------------------
Q 018574 209 VVLISATLPHEILE----MT--------------TKF------------------------------------------- 227 (354)
Q Consensus 209 ~i~lSaT~~~~~~~----~~--------------~~~------------------------------------------- 227 (354)
.+++|+|+.+.... ++ ..|
T Consensus 547 RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE 626 (1157)
T KOG0386|consen 547 RLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVE 626 (1157)
T ss_pred hhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHh
Confidence 56667774211000 00 000
Q ss_pred --cCCCeEE-----------------------EecC-----Cccc-----------------ccCceeEEE------Eec
Q 018574 228 --MTDPVKI-----------------------LVKR-----DELT-----------------LEGIKQFFV------AVE 254 (354)
Q Consensus 228 --~~~~~~~-----------------------~~~~-----~~~~-----------------~~~~~~~~~------~~~ 254 (354)
+.+.... ..+. .... ..++...+. .+-
T Consensus 627 ~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 627 QELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred hhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 0000000 0000 0000 000000000 000
Q ss_pred cccchHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCC---CcEEEEc
Q 018574 255 REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT---TRVLITT 329 (354)
Q Consensus 255 ~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~T 329 (354)
....+...+.+++-.. .+++++.||.-.....-+..+|.-.++....++|....++|...++.|..-. ...|++|
T Consensus 707 R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllst 786 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLST 786 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeee
Confidence 1112455555555432 4589999999999999999999888899999999999999999999998644 3457889
Q ss_pred cccccCCCcCCCcEEEecCCCCCC
Q 018574 330 DVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 330 ~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+.+.|+|+..++.||.||--||+
T Consensus 787 ragglglNlQtadtviifdsdwnp 810 (1157)
T KOG0386|consen 787 RAGGLGLNLQTADTVIIFDSDWNP 810 (1157)
T ss_pred cccccccchhhcceEEEecCCCCc
Confidence 999999999999999999998876
No 148
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=1.8e-13 Score=119.42 Aligned_cols=300 Identities=11% Similarity=0.048 Sum_probs=193.1
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccC--
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF-- 127 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~-- 127 (354)
.+.-.....+|.++++.+.+|++.++.-.+.+||.+++-......+... .....+++.|+.++++....-+.-....
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~ 359 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-HATNSLLPSEMVEHLRNGSKGQVVHVEVIK 359 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-cccceecchhHHHHhhccCCceEEEEEehh
Confidence 3444567899999999999999999999999999988877766554332 2345899999999887654432211111
Q ss_pred --cCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCC----ccCCCccEEEEecchhhhccC---cHHHHHH
Q 018574 128 --INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT----LRTRAIKLLVLDESDEMLSRG---FKDQIYD 198 (354)
Q Consensus 128 --~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~~~vvvDE~h~~~~~~---~~~~~~~ 198 (354)
.+-.+.+..+.+ ..++......+..++++.|+.......... .++....++++||+|...... ....++.
T Consensus 360 ~~K~A~V~~~D~~s-E~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~ 438 (1034)
T KOG4150|consen 360 ARKSAYVEMSDKLS-ETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRA 438 (1034)
T ss_pred hhhcceeecccCCC-chhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHH
Confidence 111222222222 223333345568899999887755433221 222345678999999864331 2233444
Q ss_pred HHhhC-----CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccc--------cchHHHHHH
Q 018574 199 VYRYL-----PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE--------EWKFDTLCD 265 (354)
Q Consensus 199 i~~~~-----~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~ 265 (354)
+++.+ ..+.|++-.++|+......+...+-..-..+....+... +-.+.+.+.++- +.++....+
T Consensus 439 L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs--~~K~~V~WNP~~~P~~~~~~~~~i~E~s~ 516 (1034)
T KOG4150|consen 439 LSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS--SEKLFVLWNPSAPPTSKSEKSSKVVEVSH 516 (1034)
T ss_pred HHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC--ccceEEEeCCCCCCcchhhhhhHHHHHHH
Confidence 43333 246788989999877766655544444333333333222 223333332211 123444444
Q ss_pred HHhhC--CCCcEEEEcCchhhHHHHHHHHhcC----C----CeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Q 018574 266 LYDTL--TITQAVIFCNTKRKVDWLTEKMRGY----N----FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (354)
Q Consensus 266 ~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 335 (354)
++... .+-++|.||.+++.++-+....++. + -.+..|.|+...++|..+..+.--|+.+-+|+|++++-|
T Consensus 517 ~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELG 596 (1034)
T KOG4150|consen 517 LFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELG 596 (1034)
T ss_pred HHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhc
Confidence 43322 2458999999999988776655542 1 124568899999999999988888999999999999999
Q ss_pred CCcCCCcEEEecCCCCCC
Q 018574 336 LDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 336 idi~~~~~Vi~~~~p~s~ 353 (354)
+|+..++.|++.++|-|+
T Consensus 597 IDIG~LDAVl~~GFP~S~ 614 (1034)
T KOG4150|consen 597 IDIGHLDAVLHLGFPGSI 614 (1034)
T ss_pred cccccceeEEEccCchhH
Confidence 999999999999999875
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.52 E-value=1.1e-12 Score=122.69 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCC--CcEEEEcccccc
Q 018574 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT--TRVLITTDVWAR 334 (354)
Q Consensus 259 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~~ 334 (354)
|+..|.-+++.. .++++|||++..+..+-+..+|.-.|+....++|..+-++|...++.|+.+. ++.|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 566666666643 4579999999999999999999998999999999999999999999999764 567888999999
Q ss_pred CCCcCCCcEEEecCCCCCC
Q 018574 335 GLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 335 Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+|+..++.|||||--||+
T Consensus 1341 GiNLtgADTVvFYDsDwNP 1359 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNP 1359 (1958)
T ss_pred ccccccCceEEEecCCCCc
Confidence 9999999999999999886
No 150
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.51 E-value=3.8e-13 Score=100.84 Aligned_cols=96 Identities=32% Similarity=0.505 Sum_probs=88.8
Q ss_pred chHHHHHHHHhhCC--CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Q 018574 258 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (354)
Q Consensus 258 ~~~~~l~~~l~~~~--~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 335 (354)
.+...+..++.... ++++||||++.+.++.+++.|.+.+..+..+||++++.+|..+++.|.++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 47777777777664 6899999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCcCCCcEEEecCCCCCC
Q 018574 336 LDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 336 idi~~~~~Vi~~~~p~s~ 353 (354)
+|+|.+++||+++.|+|+
T Consensus 92 ~d~~~~~~vi~~~~~~~~ 109 (131)
T cd00079 92 IDLPNVSVVINYDLPWSP 109 (131)
T ss_pred cChhhCCEEEEeCCCCCH
Confidence 999999999999999885
No 151
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.50 E-value=1.1e-13 Score=100.71 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=83.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (354)
+|+-.++-..||+|||.-.+.-++...... +.++|+|.||+.++..+.+.++.. ++.+.....+. ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~-------~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR-------TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS----------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec-------cc
Confidence 466678999999999987777666554433 346999999999999999888533 33332211110 12
Q ss_pred cCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC--cHHHHHHHHhhCCCCCcEEEEEeeCchhH
Q 018574 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEI 220 (354)
Q Consensus 149 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~lSaT~~~~~ 220 (354)
..+..|-+.|...+.+++.+ .....++++||+||||-....+ +...+...... ....++++|||+|-..
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~--g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES--GEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT--TS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhhc--cCeeEEEEeCCCCCCC
Confidence 23467888999988777665 5556799999999999853222 22333333221 3457999999998654
No 152
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.50 E-value=1.4e-11 Score=107.72 Aligned_cols=258 Identities=16% Similarity=0.187 Sum_probs=176.2
Q ss_pred ccCCCceeEEEEcCCHHHHHHHHHHHHHhccC-------------cCeE------EEEEeCCcchHHhHHhh--------
Q 018574 96 DTSSREVQALILSPTRELATQTEKVILAIGDF-------------INIQ------AHACVGGKSVGEDIRKL-------- 148 (354)
Q Consensus 96 ~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~~~~-------- 148 (354)
.++-.++++|||+|++..|.++.+.+-++... ++.. ...-........+...+
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 34455789999999999999998888766533 1100 00000000000111111
Q ss_pred -----------------cCCCeEEEeCcHHHHHHHhc------CCccCCCccEEEEecchhhhccCcH--HHHHHHHhhC
Q 018574 149 -----------------EHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFK--DQIYDVYRYL 203 (354)
Q Consensus 149 -----------------~~~~~iiv~T~~~l~~~~~~------~~~~~~~~~~vvvDE~h~~~~~~~~--~~~~~i~~~~ 203 (354)
...+||||++|=-|...+.. ..-.++.+.++|+|.+|.+....|. ..+...+...
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~ 191 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQ 191 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccC
Confidence 12479999999888776663 2334578899999999998655433 3333334444
Q ss_pred CCC---------------------CcEEEEEeeCchhHHHHHHhccCCC-eEEEec--CC-----cccccCceeEEEEec
Q 018574 204 PPD---------------------LQVVLISATLPHEILEMTTKFMTDP-VKILVK--RD-----ELTLEGIKQFFVAVE 254 (354)
Q Consensus 204 ~~~---------------------~~~i~lSaT~~~~~~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~~~~~~ 254 (354)
|.+ +|.+++|+...++...+....+.+. ..+... .. ......+.|.+...+
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEec
Confidence 422 6999999999999999888855442 122211 11 122345677777655
Q ss_pred cccc------h-----HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCC
Q 018574 255 REEW------K-----FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT 323 (354)
Q Consensus 255 ~~~~------~-----~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 323 (354)
.... . ...+-.+.+....+.+|||++|.-+--.+.+.|++.++.+..++...+..+..+.-..|..|+.
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 4431 1 1222223324455789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcc--ccccCCCcCCCcEEEecCCCCCC
Q 018574 324 RVLITTD--VWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 324 ~vlv~T~--~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
++|+.|. -.-+-..+.++++||+|++|..+
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p 383 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENP 383 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCCh
Confidence 9999995 66778889999999999999986
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.49 E-value=3.4e-12 Score=117.47 Aligned_cols=251 Identities=12% Similarity=0.130 Sum_probs=160.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
.-.++.+|+|+|||.+..-|+...+.. +..++|++..+++|+.+...+++..+-. ++....-..+.... ..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIID------GR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccccc------cc
Confidence 446999999999998888877766542 3456999999999999999999765421 22211111111110 12
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcH-------HHHHHHHhhCCCCCcEEEEEeeCchhHHHH
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK-------DQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~-------~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~ 223 (354)
..+-++...++|.+... -...++++||+||+-..+..-+. ..+..+...+.....+|++.|+++....++
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 35667777777755432 23456899999999987544222 222334444567788999999999999999
Q ss_pred HHhccCCC-eEEEecCCcccccCceeEEEEe-c-----------------------------------cccchHHHHHHH
Q 018574 224 TTKFMTDP-VKILVKRDELTLEGIKQFFVAV-E-----------------------------------REEWKFDTLCDL 266 (354)
Q Consensus 224 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------------~~~~~~~~l~~~ 266 (354)
+..+.++. +.+....... ++...+...+ + ...........+
T Consensus 198 l~~~Rp~~~i~vI~n~y~~--~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYAS--PGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHhCCCCcEEEEEeeeec--CCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 99977653 3333222111 1100000000 0 000112333333
Q ss_pred HhhCC-CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCC
Q 018574 267 YDTLT-ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341 (354)
Q Consensus 267 l~~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 341 (354)
..... ++++.||+.|...++.+++..+....++..+++.-+..+. +.| ++.+|++-|+.+..|+++...
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~~ 345 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEEK 345 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccchh
Confidence 33333 4578899999999999999998888889999887654422 333 689999999999999999644
No 154
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.49 E-value=1.2e-13 Score=119.11 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHhHhhhh-------------cCCcEEEEcCCCCchhhHhHHHHhhccccCCCc--eeEEEEcCCHHHHHHHHHHHHH
Q 018574 59 IQQRAVMPII-------------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 59 ~Q~~~~~~~~-------------~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~lil~p~~~l~~q~~~~~~~ 123 (354)
||.+++.+++ ..+++++...+|+|||...+..+.......... ..+||+||. ++..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777776653 346789999999999977776665333222221 259999999 888999999999
Q ss_pred hccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHH---hcCCccCCCccEEEEecchhhhccCcHHHHHHHH
Q 018574 124 IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI---KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (354)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~---~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~ 200 (354)
+......++....++..............+++++|++.+.... ....+...++++||+||+|.+-+.. ......+.
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~-s~~~~~l~ 158 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD-SKRYKALR 158 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-SHHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-cccccccc
Confidence 9865456666666665233333334456899999999987110 0011222458999999999984433 23333333
Q ss_pred hhCCCCCcEEEEEeeCc
Q 018574 201 RYLPPDLQVVLISATLP 217 (354)
Q Consensus 201 ~~~~~~~~~i~lSaT~~ 217 (354)
. +. ....+++||||.
T Consensus 159 ~-l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 159 K-LR-ARYRWLLSGTPI 173 (299)
T ss_dssp C-CC-ECEEEEE-SS-S
T ss_pred c-cc-cceEEeeccccc
Confidence 3 54 666789999983
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.47 E-value=7.3e-12 Score=121.56 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=95.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
+..+|+--+|||||+..+..+-..+.. ...+++++||.++.|-.|+.+.+..+........ ...+.......+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 568999999999997776655544443 6678899999999999999999998885433322 22333333333443
Q ss_pred C-CeEEEeCcHHHHHHHhcC--CccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchh
Q 018574 151 G-VHVVSGTPGRVCDMIKRK--TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (354)
Q Consensus 151 ~-~~iiv~T~~~l~~~~~~~--~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~ 219 (354)
. ..|+|+|.++|....... .....+--+||+||||+.- ++..-..+...+ ++...+++|+||...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~ 416 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFK 416 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcccc
Confidence 3 589999999998776553 1122344578999999863 333333333333 347789999999543
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.46 E-value=1e-11 Score=115.58 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=97.5
Q ss_pred EEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhcC
Q 018574 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH 150 (354)
Q Consensus 74 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 150 (354)
+..+.+|||||.+|+-.+...+..++ .+|+++|..+|..|+.+.++.... +..+..++.+.+..+. +.....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 33444699999999998888876553 499999999999999999987653 1456677776554433 333444
Q ss_pred C-CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC------cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHH
Q 018574 151 G-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------FKDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (354)
Q Consensus 151 ~-~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~------~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~ 223 (354)
+ ..|+|||...+ ..++.++++||+||-|.-.-.+ ..+.+-...... .+..+++.|||++-+....
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~-~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ-HGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH-cCCcEEEECCCCCHHHHHH
Confidence 4 78999997555 4566799999999999653221 223343343333 5778999999998776554
Q ss_pred HH
Q 018574 224 TT 225 (354)
Q Consensus 224 ~~ 225 (354)
..
T Consensus 311 ~~ 312 (665)
T PRK14873 311 VE 312 (665)
T ss_pred Hh
Confidence 43
No 157
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.43 E-value=3.4e-13 Score=90.96 Aligned_cols=64 Identities=36% Similarity=0.533 Sum_probs=61.0
Q ss_pred HHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 290 EKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+.|+..++.+..+||+++..+|..+++.|++++..|||+|+++++|+|+|++++||+++.|+|+
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~ 64 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSP 64 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSH
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCH
Confidence 3678889999999999999999999999999999999999999999999999999999999985
No 158
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.38 E-value=7.6e-12 Score=117.42 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Q 018574 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (354)
Q Consensus 259 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 336 (354)
++..+...+... .+.+++|||++++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|+..|+|||+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 455555555432 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcEEEecCC
Q 018574 337 DVQQAILFFFLFL 349 (354)
Q Consensus 337 di~~~~~Vi~~~~ 349 (354)
|+|++++||++|.
T Consensus 511 dlp~v~lVii~d~ 523 (652)
T PRK05298 511 DIPEVSLVAILDA 523 (652)
T ss_pred cccCCcEEEEeCC
Confidence 9999999999886
No 159
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.35 E-value=9.7e-12 Score=105.20 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=58.2
Q ss_pred CCCCCChHHHHHhHhh----hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC---ceeEEEEcCCHHHHHHHHHHHHH
Q 018574 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
+.| .+++.|.+.+.. +.+|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 579999995554 4458899999999999999999999876654332 23799999999999998877776
Q ss_pred h
Q 018574 124 I 124 (354)
Q Consensus 124 ~ 124 (354)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 160
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.35 E-value=9.7e-12 Score=105.20 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=58.2
Q ss_pred CCCCCChHHHHHhHhh----hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC---ceeEEEEcCCHHHHHHHHHHHHH
Q 018574 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
+.| .+++.|.+.+.. +.+|+++++.+|||+|||++++.+++..+..... +.+++|.++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 579999995554 4458899999999999999999999876654332 23799999999999998877776
Q ss_pred h
Q 018574 124 I 124 (354)
Q Consensus 124 ~ 124 (354)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 161
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.33 E-value=1.6e-10 Score=109.59 Aligned_cols=181 Identities=19% Similarity=0.149 Sum_probs=104.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHHhHhhhhc--------CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIK--------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~--------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
...-.+.+.+..-..-+.+|.++++.+.. |--++--|.||+|||++=+-.+ +.+.....+.+..|..--++
T Consensus 394 ~~~~hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd~~~g~RfsiALGLRT 472 (1110)
T TIGR02562 394 AIQTHKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRDDKQGARFAIALGLRS 472 (1110)
T ss_pred chhchhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCCCCCCceEEEEccccc
Confidence 33334445443334567899999987654 2235667899999997555444 34445556667777777777
Q ss_pred HHHHHHHHHHHhccCcCeEEEEEeCCcchHHh-------------------------------------------HHhhc
Q 018574 113 LATQTEKVILAIGDFINIQAHACVGGKSVGED-------------------------------------------IRKLE 149 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~ 149 (354)
|-.|+-+.+++-...-+-....+.|+....+. ...+.
T Consensus 473 LTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~ 552 (1110)
T TIGR02562 473 LTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLS 552 (1110)
T ss_pred eeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhc
Confidence 77777666665443333333333333111100 00000
Q ss_pred --------CCCeEEEeCcHHHHHHHhcC---Ccc----CCCccEEEEecchhhhccCcHHHHHHHHhhC-CCCCcEEEEE
Q 018574 150 --------HGVHVVSGTPGRVCDMIKRK---TLR----TRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLIS 213 (354)
Q Consensus 150 --------~~~~iiv~T~~~l~~~~~~~---~~~----~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~lS 213 (354)
-..+++|+|++.++...... ... .-.-+.|||||+|.+....+ ..+..++... ..+.++++||
T Consensus 553 ~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmS 631 (1110)
T TIGR02562 553 LDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSS 631 (1110)
T ss_pred cChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEe
Confidence 02579999999998765321 111 12246799999998743332 2233333321 1356799999
Q ss_pred eeCchhHHHH
Q 018574 214 ATLPHEILEM 223 (354)
Q Consensus 214 aT~~~~~~~~ 223 (354)
||+|+.....
T Consensus 632 ATLP~~l~~~ 641 (1110)
T TIGR02562 632 ATLPPALVKT 641 (1110)
T ss_pred CCCCHHHHHH
Confidence 9999876553
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=7.8e-11 Score=111.08 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=92.1
Q ss_pred ChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEE
Q 018574 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (354)
+++|-.+++-.+.-++.-|..+.||-|||+++.+|+.-....++. +-+|+.+--|+..-++.+..+...+|+++.++
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~Gkg---VHvVTVNDYLA~RDaewmgply~fLGLsvg~i 244 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNG---VHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCI 244 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCC---cEEEEechhhhhccHHHHHHHHHHhCCceeec
Confidence 455556666666667778999999999999999988876666644 67778888899888888888888889999877
Q ss_pred eC-CcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC------CccCCCccEEEEecchhhh
Q 018574 136 VG-GKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML 188 (354)
Q Consensus 136 ~~-~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~ 188 (354)
.. +.+..+ .+-...+||.++|...| .++++.. ....+.+.+.||||+|+++
T Consensus 245 ~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 245 DKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 54 323333 23334589999998655 2333321 2233568899999999863
No 163
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=3.8e-11 Score=113.66 Aligned_cols=267 Identities=14% Similarity=0.211 Sum_probs=177.2
Q ss_pred CChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH-HhccCcCeEE
Q 018574 55 KPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~ 132 (354)
...+.|.++++.+-+ ++++++.+|+|+|||.++-++++. .....+++++.|..+.+..++.... ++....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 348889998887765 678999999999999887777665 2334579999999999877776654 5667778899
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC------cHHHHHHHHhhCCCC
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------FKDQIYDVYRYLPPD 206 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~------~~~~~~~i~~~~~~~ 206 (354)
..++|....+-. +....+|+++||+++..+ + ..+..++.|.||.|.+.+.. ... ++.+...+.++
T Consensus 1219 ~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhh
Confidence 889888876644 334479999999999665 2 44578999999999986332 122 77777888888
Q ss_pred CcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEecccc---ch----HHHHHHHHhhC-CCCcEEEE
Q 018574 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE---WK----FDTLCDLYDTL-TITQAVIF 278 (354)
Q Consensus 207 ~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~l~~~l~~~-~~~~~lvf 278 (354)
.+++.+|..+.+.- .+ ........+.+.......+ .......+.-.. .. -..+..+.+.. ..++.+||
T Consensus 1290 ir~v~ls~~lana~-d~--ig~s~~~v~Nf~p~~R~~P-l~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf 1365 (1674)
T KOG0951|consen 1290 IRVVALSSSLANAR-DL--IGASSSGVFNFSPSVRPVP-LEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVF 1365 (1674)
T ss_pred eeEEEeehhhccch-hh--ccccccceeecCcccCCCc-eeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEE
Confidence 99999999886542 22 1122222222222222111 222222222111 01 11122222222 34689999
Q ss_pred cCchhhHHHHHHHHhcC----------------------CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Q 018574 279 CNTKRKVDWLTEKMRGY----------------------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (354)
Q Consensus 279 ~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 336 (354)
+++++++..++..|-.. ..++.+=|.+++..+..-+-.-|..|.+.|+|.... ..|+
T Consensus 1366 ~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~ 1444 (1674)
T KOG0951|consen 1366 LPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGT 1444 (1674)
T ss_pred eccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccc
Confidence 99999998887655321 122223377888888787888899999999988865 6676
Q ss_pred CcC
Q 018574 337 DVQ 339 (354)
Q Consensus 337 di~ 339 (354)
-..
T Consensus 1445 ~~~ 1447 (1674)
T KOG0951|consen 1445 KLK 1447 (1674)
T ss_pred ccc
Confidence 664
No 164
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.30 E-value=7.9e-11 Score=108.61 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=75.5
Q ss_pred HHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhc----------------------CCCeEEEeecCCCHHHHHHHH
Q 018574 260 FDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRG----------------------YNFTVSSMHGDMPQKERDAIM 315 (354)
Q Consensus 260 ~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~ 315 (354)
+-.|..+|+.- -+.|.|||.++.....-+..+|.- .|...+.++|.....+|..+.
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 44455555422 247999999999988888777752 145678899999999999999
Q ss_pred HHHhCC-C---CcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 316 GEFRSG-T---TRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 316 ~~f~~g-~---~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+.|++- + -..||+|.+.+-|+|+-.++.||.||..|||
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNP 1249 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNP 1249 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCC
Confidence 999863 2 2369999999999999999999999999997
No 165
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.23 E-value=3.8e-10 Score=111.62 Aligned_cols=295 Identities=18% Similarity=0.190 Sum_probs=182.0
Q ss_pred CCChHHHHHhHhhhhc-----CCcEEEEcCCCCchhhHhHHHHhhccccCCC-ceeEEEEcCCHHHHHHHHHHHHHhccC
Q 018574 54 EKPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPTRELATQTEKVILAIGDF 127 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~-----~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (354)
..+++||.+.++++.. +.+.++...+|.|||...+..+......... .+.++++||+ ++..+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4678999999988662 6678889999999998777766553333322 3468999995 7778889888887765
Q ss_pred cCeEEEEEeCCcch----HHhHHhhcCC-----CeEEEeCcHHHHHHH-hcCCccCCCccEEEEecchhhhccCcHHHHH
Q 018574 128 INIQAHACVGGKSV----GEDIRKLEHG-----VHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (354)
Q Consensus 128 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~iiv~T~~~l~~~~-~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~ 197 (354)
... +....|.... .+....+... .+++++|.+.+.... ....+....++.+|+||+|.+.+.. .....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH
Confidence 543 4444444431 3333333332 789999999887732 2234455678999999999965443 11111
Q ss_pred HHHhhCCCCCcEEEEEeeCchh-HHH---HHH-----------------------------------------------h
Q 018574 198 DVYRYLPPDLQVVLISATLPHE-ILE---MTT-----------------------------------------------K 226 (354)
Q Consensus 198 ~i~~~~~~~~~~i~lSaT~~~~-~~~---~~~-----------------------------------------------~ 226 (354)
.+. .+... ..+.+|+||-+. +.+ +.. .
T Consensus 494 ~l~-~~~~~-~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 ALQ-FLKAL-NRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHH-HHhhc-ceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 111 11111 124555554110 000 000 0
Q ss_pred cc-CC-CeE--EE--------------ecC-------------------------C----------ccc-------ccCc
Q 018574 227 FM-TD-PVK--IL--------------VKR-------------------------D----------ELT-------LEGI 246 (354)
Q Consensus 227 ~~-~~-~~~--~~--------------~~~-------------------------~----------~~~-------~~~~ 246 (354)
+. +. ... +. ... . ... ...+
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 00 00 000 00 000 0 000 0000
Q ss_pred eeEEEEecc----------------------------cc-chHHHHHHHH---hhCCCC--cEEEEcCchhhHHHHHHHH
Q 018574 247 KQFFVAVER----------------------------EE-WKFDTLCDLY---DTLTIT--QAVIFCNTKRKVDWLTEKM 292 (354)
Q Consensus 247 ~~~~~~~~~----------------------------~~-~~~~~l~~~l---~~~~~~--~~lvf~~~~~~~~~l~~~l 292 (354)
...-..... .. .+...+.+++ ....+. ++++|++......-+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 000000000 00 3556666666 222334 8999999999999999999
Q ss_pred hcCCCeEEEeecCCCHHHHHHHHHHHhCC--CCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 293 RGYNFTVSSMHGDMPQKERDAIMGEFRSG--TTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+..++....++|.++.++|...++.|.++ ....++++.+.+.|+|+..+++||+||..+|+
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp 794 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNP 794 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccCh
Confidence 99888899999999999999999999986 34456666899999999999999999999986
No 166
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.20 E-value=6.6e-11 Score=80.61 Aligned_cols=67 Identities=33% Similarity=0.523 Sum_probs=62.6
Q ss_pred HHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 287 WLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 287 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+++.|+..++.+..+||++++++|..+++.|+++...||++|+++++|+|+|.+++||+++.|+|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~ 68 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSP 68 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCH
Confidence 4677788888999999999999999999999999999999999999999999999999999999874
No 167
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.18 E-value=1e-09 Score=102.11 Aligned_cols=274 Identities=18% Similarity=0.220 Sum_probs=169.9
Q ss_pred ChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEE
Q 018574 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (354)
++++--+.+-.+.-+..-+..+-||-|||+++.+|+.-....++. +.+++-.--|+..-+++...+...+++++...
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg---VhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~ 155 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG---VHVVTVNDYLARRDAEWMGPLYEFLGLSVGVI 155 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC---cEEeeehHHhhhhCHHHHHHHHHHcCCceeec
Confidence 344445555555666778899999999999999887755555543 78888888899888999999888999999998
Q ss_pred eCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhc------CCccCCCccEEEEecchhhhcc----------------Cc
Q 018574 136 VGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKR------KTLRTRAIKLLVLDESDEMLSR----------------GF 192 (354)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~------~~~~~~~~~~vvvDE~h~~~~~----------------~~ 192 (354)
..+....+....+ .++|.++|...| .++++. .......+.+-|+||++.++-. ..
T Consensus 156 ~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~ 233 (822)
T COG0653 156 LAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSEL 233 (822)
T ss_pred cCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchH
Confidence 8887666555544 389999998655 222222 1222346788999999986311 11
Q ss_pred HHHHHHHHhhCCCC------------------------------------------------------------------
Q 018574 193 KDQIYDVYRYLPPD------------------------------------------------------------------ 206 (354)
Q Consensus 193 ~~~~~~i~~~~~~~------------------------------------------------------------------ 206 (354)
...+..+...+...
T Consensus 234 Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev 313 (822)
T COG0653 234 YKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEV 313 (822)
T ss_pred HHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeE
Confidence 22333333222211
Q ss_pred ---------------------------------------------------CcEEEEEeeCchhHHHHHHhccCCCeEEE
Q 018574 207 ---------------------------------------------------LQVVLISATLPHEILEMTTKFMTDPVKIL 235 (354)
Q Consensus 207 ---------------------------------------------------~~~i~lSaT~~~~~~~~~~~~~~~~~~~~ 235 (354)
..+.+||+|...+..++..-+..+...+.
T Consensus 314 ~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iP 393 (822)
T COG0653 314 VIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIP 393 (822)
T ss_pred EEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeecc
Confidence 12333333333333333333333332222
Q ss_pred ecCCcccccCceeEEEEeccccchHHHHHHHHh--hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHH
Q 018574 236 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD--TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDA 313 (354)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 313 (354)
........+.-... ......|...+...+. ...++|+||-+.+++.++.+.+.|++.|++..++..... .++.
T Consensus 394 Tnrp~~R~D~~D~v---y~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA 468 (822)
T COG0653 394 TNRPIIRLDEPDLV---YKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREA 468 (822)
T ss_pred CCCcccCCCCcccc---ccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHH
Confidence 22221111111111 1112224444444433 335679999999999999999999999999999988754 3333
Q ss_pred HHHHHhCCCCcEEEEccccccCCCcC
Q 018574 314 IMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 314 ~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
-+-...-....|-|+|+++++|-||.
T Consensus 469 ~Iia~AG~~gaVTiATNMAGRGTDIk 494 (822)
T COG0653 469 EIIAQAGQPGAVTIATNMAGRGTDIK 494 (822)
T ss_pred HHHhhcCCCCccccccccccCCcccc
Confidence 33333323457999999999999985
No 168
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.17 E-value=8.8e-10 Score=90.80 Aligned_cols=130 Identities=21% Similarity=0.353 Sum_probs=95.6
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|.-..-.+..|+ ++...||-|||++..+++......+. .+=|++.+.-|+..-++.+..+...+|+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~---~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGK---GVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcC---CcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 455 78888887776665554 89999999999998888776666553 4889999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHH-HHHhcC------CccCCCccEEEEecchhhh
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~-~~~~~~------~~~~~~~~~vvvDE~h~~~ 188 (354)
.+.....+....+....+. ++|+++|...+. ++++.. ......+.++||||+|.++
T Consensus 148 sv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999998877655444443 689999998875 334331 1124678999999999975
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.9e-09 Score=93.82 Aligned_cols=300 Identities=15% Similarity=0.183 Sum_probs=182.1
Q ss_pred CCCChHHHHHhHhhhhcCCcEEEEc-CCCCch--hhHhHHHHhhccc----------------------------cCCCc
Q 018574 53 FEKPSAIQQRAVMPIIKGRDVIAQA-QSGTGK--TSMIALTVCQTVD----------------------------TSSRE 101 (354)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~ii~~-~tGsGK--T~~~~~~~~~~~~----------------------------~~~~~ 101 (354)
-.++++.|.+++....+.++++..- ..+.|+ +.+|.+-++.++. ++-.+
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 3579999999999988888875432 223444 3456666665541 12235
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccCcCe------EEEEE----e---------------------CCc--------chH
Q 018574 102 VQALILSPTRELATQTEKVILAIGDFINI------QAHAC----V---------------------GGK--------SVG 142 (354)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~------~~~~~----~---------------------~~~--------~~~ 142 (354)
+++|||||+++-|..+.+.+..+....+- +-..+ . |++ ...
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 78999999999999999988776322110 00000 0 000 000
Q ss_pred HhHHhh---cCCCeEEEeCcHHHHHHHhcC------CccCCCccEEEEecchhhhccCcHHHHHHHHhhC---CCC----
Q 018574 143 EDIRKL---EHGVHVVSGTPGRVCDMIKRK------TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL---PPD---- 206 (354)
Q Consensus 143 ~~~~~~---~~~~~iiv~T~~~l~~~~~~~------~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~---~~~---- 206 (354)
....++ ....+|+||+|=-|.-.+.+. .-.++.+.++|+|.+|.++...|.. +..++..+ |..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccCC
Confidence 111111 134799999998776666531 1234667899999999997666543 33444444 222
Q ss_pred -----------------CcEEEEEeeCchhHHHHHHhccCCCe-EEEe---cCC-cccc--cCceeEEEEeccc------
Q 018574 207 -----------------LQVVLISATLPHEILEMTTKFMTDPV-KILV---KRD-ELTL--EGIKQFFVAVERE------ 256 (354)
Q Consensus 207 -----------------~~~i~lSaT~~~~~~~~~~~~~~~~~-~~~~---~~~-~~~~--~~~~~~~~~~~~~------ 256 (354)
+|.+++|+--.+....++..++.+.. .+.. ... .... -.+.+.+......
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 35666666666666666665554321 1111 111 1100 1111211111111
Q ss_pred cchHHHH-HHHH---hhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc--
Q 018574 257 EWKFDTL-CDLY---DTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-- 330 (354)
Q Consensus 257 ~~~~~~l-~~~l---~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-- 330 (354)
+...... .+++ ......-+|||.++.-.--++..++++..+....++...+..+-.+.-+.|-.|...||+-|.
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 1111111 1111 112234589999999999999999999888777777776777777777889999999999995
Q ss_pred ccccCCCcCCCcEEEecCCCCCC
Q 018574 331 VWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 331 ~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
-.-+-.++.+++.||+|.+|.+|
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P 635 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNP 635 (698)
T ss_pred hhhhhheecceeeEEEecCCCCc
Confidence 56778999999999999999987
No 170
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.95 E-value=2.3e-08 Score=82.94 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=51.6
Q ss_pred CChHHHHHhHhhhhcCCc-EEEEcCCCCchhhHhHHHHhhcc-----ccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTV-----DTSSREVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~-~ii~~~tGsGKT~~~~~~~~~~~-----~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
++++.|.+++..++.... .+|+||+|+|||.+....+.... .....+.++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 468899999999999888 99999999999965555444442 1244566799999999999999998877
No 171
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.81 E-value=3.4e-08 Score=78.15 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=73.8
Q ss_pred CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHH-------HHHHHHhc
Q 018574 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-------EKVILAIG 125 (354)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~-------~~~~~~~~ 125 (354)
+...+..|..+++.+...+.+++.+|.|+|||+.++..+++.+..+ .-.+++|+-|..+..+.. .+.+.-+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS---------TTT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3456889999999999889999999999999999999888888764 334678887876432111 00000000
Q ss_pred cCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCC
Q 018574 126 DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (354)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~ 205 (354)
...--....+.+.. ....+.....|-+..+..+ +-..+ +-.+||+|||+.+ ....+..++.++..
T Consensus 81 ~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~i----RGrt~---~~~~iIvDEaQN~----t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 81 RPIYDALEELFGKE----KLEELIQNGKIEIEPLAFI----RGRTF---DNAFIIVDEAQNL----TPEELKMILTRIGE 145 (205)
T ss_dssp HHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGG----TT--B----SEEEEE-SGGG------HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhh----cCccc---cceEEEEecccCC----CHHHHHHHHcccCC
Confidence 00000000000011 1111112234444443222 21112 2389999999987 67788999999988
Q ss_pred CCcEEEEEee
Q 018574 206 DLQVVLISAT 215 (354)
Q Consensus 206 ~~~~i~lSaT 215 (354)
+.+++++.-.
T Consensus 146 ~skii~~GD~ 155 (205)
T PF02562_consen 146 GSKIIITGDP 155 (205)
T ss_dssp T-EEEEEE--
T ss_pred CcEEEEecCc
Confidence 8877765544
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.77 E-value=9e-08 Score=91.41 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=86.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH-----Hhc----cCcCeEEEEEeCCc--
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-----AIG----DFINIQAHACVGGK-- 139 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-----~~~----~~~~~~~~~~~~~~-- 139 (354)
.++.+.++||+|||.+|+..+++.....+ -.++||+||+.++...+...+. .+. ....+.......+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 47899999999999999988877655433 2569999999999988876654 111 11123333333222
Q ss_pred -----chHHhHHhhcC-------CCeEEEeCcHHHHHHHh-cCC----------ccC----CCccEEEEecchhhhccCc
Q 018574 140 -----SVGEDIRKLEH-------GVHVVSGTPGRVCDMIK-RKT----------LRT----RAIKLLVLDESDEMLSRGF 192 (354)
Q Consensus 140 -----~~~~~~~~~~~-------~~~iiv~T~~~l~~~~~-~~~----------~~~----~~~~~vvvDE~h~~~~~~~ 192 (354)
+.......+.. ...|.+.|.+.|..-.. ... .+. ..-.+||+||.|++...
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 11222222221 46899999998854211 000 011 22358999999998542
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeeCch
Q 018574 193 KDQIYDVYRYLPPDLQVVLISATLPH 218 (354)
Q Consensus 193 ~~~~~~i~~~~~~~~~~i~lSaT~~~ 218 (354)
...+..+. .+.+. -++.+|||.+.
T Consensus 217 ~k~~~~i~-~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAIE-ALKPQ-MIIRFGATFPD 240 (986)
T ss_pred hHHHHHHH-hcCcc-cEEEEeeecCC
Confidence 23445553 33332 25779999976
No 173
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.76 E-value=4.4e-08 Score=87.85 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
.+...++.+++.-|..++.+++++.-.+|++|+|+|||.+....++..+... +.++|+++|+..-++|+++.+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~--~~~VLvcApSNiAVDqLaeKIh~tg- 478 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH--AGPVLVCAPSNIAVDQLAEKIHKTG- 478 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc--CCceEEEcccchhHHHHHHHHHhcC-
Confidence 4555678899999999999999999999999999999976666555544442 3459999999999999999997766
Q ss_pred CcCeEEEEEeC
Q 018574 127 FINIQAHACVG 137 (354)
Q Consensus 127 ~~~~~~~~~~~ 137 (354)
+++..+..
T Consensus 479 ---LKVvRl~a 486 (935)
T KOG1802|consen 479 ---LKVVRLCA 486 (935)
T ss_pred ---ceEeeeeh
Confidence 55555544
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.74 E-value=7.7e-08 Score=76.88 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=72.0
Q ss_pred CChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
++++.|.+++..++.+ +-.++.+++|+|||++.. .+...+... +.++++++||...+..+.+... +..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~-~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~~-------~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLK-ALAEALEAA--GKRVIGLAPTNKAAKELREKTG-------IEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHH-HHHHHHHHT--T--EEEEESSHHHHHHHHHHHT-------S-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHH-HHHHHHHhC--CCeEEEECCcHHHHHHHHHhhC-------cch
Confidence 4688999999999754 357888999999997543 344444433 3579999999988887666531 221
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC----CccCCCccEEEEecchhhhccCcHHHHHHHHhhCCC-CC
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DL 207 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~----~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~-~~ 207 (354)
. |..++....... .....+.++|||||+-.+ ....+..++...+. +.
T Consensus 71 ~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 71 Q------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLAKKSGA 122 (196)
T ss_dssp E------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS-T-T-
T ss_pred h------------------------hHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHHHhcCC
Confidence 1 111111111110 001345679999999987 44566677777766 55
Q ss_pred cEEEEEee
Q 018574 208 QVVLISAT 215 (354)
Q Consensus 208 ~~i~lSaT 215 (354)
+++++.-+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 65555444
No 175
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.73 E-value=1.4e-05 Score=72.60 Aligned_cols=80 Identities=8% Similarity=0.134 Sum_probs=55.9
Q ss_pred hhCCCCcEEEEcCchhhHHHHHHHHhcCCC-------eEEEeecCCCHHHHHHHHHHH----hCCCCcEEEEc--ccccc
Q 018574 268 DTLTITQAVIFCNTKRKVDWLTEKMRGYNF-------TVSSMHGDMPQKERDAIMGEF----RSGTTRVLITT--DVWAR 334 (354)
Q Consensus 268 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f----~~g~~~vlv~T--~~~~~ 334 (354)
...+ +.+++|++|.+....+.+..++.|+ +-+++-..-+ -..+++.+ ..|...+|++. .-+++
T Consensus 626 ~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSE 701 (821)
T KOG1133|consen 626 NAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSE 701 (821)
T ss_pred hhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccc
Confidence 3334 7799999999999999988876543 2222222222 23344444 45777888887 69999
Q ss_pred CCCcCC--CcEEEecCCCC
Q 018574 335 GLDVQQ--AILFFFLFLFC 351 (354)
Q Consensus 335 Gidi~~--~~~Vi~~~~p~ 351 (354)
|||+.+ +++||.+++|-
T Consensus 702 GINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 702 GINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred ccccccccccEEEEeecCC
Confidence 999974 78899999985
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.64 E-value=5.5e-07 Score=74.66 Aligned_cols=157 Identities=23% Similarity=0.179 Sum_probs=102.9
Q ss_pred CChHHHHHhHhhhh----------cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 55 KPSAIQQRAVMPII----------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~----------~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
.+...|.+++-..- .+..+++--.||.||-......++....++. .+.|+++.+..|.......++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEECChhhhhHHHHHHHHh
Confidence 45777877764432 2457899999999999988888887776663 36899999999999999999988
Q ss_pred ccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-----Ccc-------CCCccEEEEecchhhhccC-
Q 018574 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLR-------TRAIKLLVLDESDEMLSRG- 191 (354)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-----~~~-------~~~~~~vvvDE~h~~~~~~- 191 (354)
+.. .+.+.-+..-... .. ......|+++|+..|....... .+. ...-++|||||||...+..
T Consensus 115 G~~-~i~v~~l~~~~~~--~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKYG--DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhccC--cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 844 3322222110000 00 1123579999999887664321 110 1224689999999985432
Q ss_pred -------cHHHHHHHHhhCCCCCcEEEEEeeCchh
Q 018574 192 -------FKDQIYDVYRYLPPDLQVVLISATLPHE 219 (354)
Q Consensus 192 -------~~~~~~~i~~~~~~~~~~i~lSaT~~~~ 219 (354)
.......+-+.+| +.+++.+|||...+
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgase 223 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASE 223 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCC
Confidence 2244455555664 55699999997554
No 177
>PRK10536 hypothetical protein; Provisional
Probab=98.51 E-value=4.7e-07 Score=73.80 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=82.9
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH-------HHHHHH
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ-------TEKVIL 122 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q-------~~~~~~ 122 (354)
-.++...+..|...+..+.++..+++.||+|+|||+.+...+++.+..+. -.++++.-|..+..+. ..+.+.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 34566789999999999988889999999999999988887776664432 2345555565432211 011111
Q ss_pred H----hccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHH
Q 018574 123 A----IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (354)
Q Consensus 123 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~ 198 (354)
- +.+.+.. +.+.....+... .....|-+... .+++...+ .-++||+||++.+ ....+..
T Consensus 133 p~~~pi~D~L~~----~~~~~~~~~~~~--~~~~~Iei~~l----~ymRGrtl---~~~~vIvDEaqn~----~~~~~k~ 195 (262)
T PRK10536 133 PYFRPVYDVLVR----RLGASFMQYCLR--PEIGKVEIAPF----AYMRGRTF---ENAVVILDEAQNV----TAAQMKM 195 (262)
T ss_pred HHHHHHHHHHHH----HhChHHHHHHHH--hccCcEEEecH----HHhcCCcc---cCCEEEEechhcC----CHHHHHH
Confidence 1 1100000 001111111000 11223444433 22332232 3489999999987 4578888
Q ss_pred HHhhCCCCCcEEEE
Q 018574 199 VYRYLPPDLQVVLI 212 (354)
Q Consensus 199 i~~~~~~~~~~i~l 212 (354)
++..+..+.+++++
T Consensus 196 ~ltR~g~~sk~v~~ 209 (262)
T PRK10536 196 FLTRLGENVTVIVN 209 (262)
T ss_pred HHhhcCCCCEEEEe
Confidence 88888877776653
No 178
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.51 E-value=1.5e-06 Score=82.91 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=80.8
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.++ .+++.|.+++..+..++-+++.+++|+|||++.- .++..+........+++++||-.-+..+.+.. +.
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~ 390 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GL 390 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CC
Confidence 454 8999999999999988999999999999996443 33333333221245888899987776554432 11
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-----CCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCC
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-----KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-----~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~ 205 (354)
.. .|..+++..... ..-.....++||+||++.+. ...+..+++.++.
T Consensus 391 ~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 391 TA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPD 442 (720)
T ss_pred cc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCC
Confidence 11 111111110000 00112356899999999873 3456677777887
Q ss_pred CCcEEEEEee
Q 018574 206 DLQVVLISAT 215 (354)
Q Consensus 206 ~~~~i~lSaT 215 (354)
..+++++.-+
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 8888876655
No 179
>PF13245 AAA_19: Part of AAA domain
Probab=98.47 E-value=6.4e-07 Score=59.15 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
++-++|.+|+|+|||...+..+...+.. ...+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4445669999999997777776666632 112567999999999999998887
No 180
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.46 E-value=1.2e-06 Score=81.40 Aligned_cols=282 Identities=15% Similarity=0.212 Sum_probs=156.4
Q ss_pred HHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCc--eeEEEEcCCHHHHHHHHHHHHH-hccCcCeEEEEE
Q 018574 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVILA-IGDFINIQAHAC 135 (354)
Q Consensus 59 ~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~ 135 (354)
+-..++..+..++-+++.+.||.|||.-+...++..+.....+ ..+.+.-|++..+..+++++.+ -+...+-.+.
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvg-- 459 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCG-- 459 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccc--
Confidence 3345666667788899999999999999999999887665443 2466666777666666655432 2212111111
Q ss_pred eCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-cHHHHHHHHhhCCCCCcEEEEEe
Q 018574 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
.+......--....-|+++|.+-+++.++.... ...++++||.|...-.+ |...+..=......+..++++||
T Consensus 460 ---y~vRf~Sa~prpyg~i~fctvgvllr~~e~glr---g~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 460 ---YNVRFDSATPRPYGSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred ---ccccccccccccccceeeeccchhhhhhhhccc---ccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 111111110111245789999999988886543 56889999999864332 22222111112234555666666
Q ss_pred eCchhHH--------------------HHHHhccCCCeEEEec----------CCccccc-C-----------------c
Q 018574 215 TLPHEIL--------------------EMTTKFMTDPVKILVK----------RDELTLE-G-----------------I 246 (354)
Q Consensus 215 T~~~~~~--------------------~~~~~~~~~~~~~~~~----------~~~~~~~-~-----------------~ 246 (354)
|+..+.. .++.+.+..+...... ..+...+ + +
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 6543321 1222211111100000 0000000 0 0
Q ss_pred eeEEEEeccccchHHHHHHHHhh----CCCCcEEEEcCchhhHHHHHHHHhcC-------CCeEEEeecCCCHHHHHHHH
Q 018574 247 KQFFVAVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGY-------NFTVSSMHGDMPQKERDAIM 315 (354)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~ 315 (354)
................++.++.. .-.+-+++|.+.-.....+...|... .......|+-....+..++.
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 00000000001112222222222 22356888888877777776666443 34566677777767777788
Q ss_pred HHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 316 GEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 316 ~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
+.-..|..++++.|+.....+.+-++..||..+
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~c 726 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSC 726 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeee
Confidence 888889999999999999999988888777654
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.43 E-value=1.5e-06 Score=76.44 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=66.6
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (354)
-++|.|.+|||||.+++-.+... .....+.+++++++..+|...+.+.+..... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 47999999999997666555444 2233455689999999999988887754320 000
Q ss_pred CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-------cHHHHHHHHhh
Q 018574 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------FKDQIYDVYRY 202 (354)
Q Consensus 152 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-------~~~~~~~i~~~ 202 (354)
....+..+..+.............+++|||||||++.... ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1112223333333222223345678999999999997631 23556566554
No 182
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.42 E-value=1.6e-07 Score=88.43 Aligned_cols=131 Identities=15% Similarity=0.217 Sum_probs=96.3
Q ss_pred ChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 56 PSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
..+.|.+.+..... ..++++.+|||+|||.++...+...+... ++.+++++.|.++|...-.+...+.....++++..
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-CCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 34556655544333 46789999999999998888877666544 44789999999999988777776655555888988
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHh--cCCccCCCccEEEEecchhhhcc
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK--RKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~--~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
+.|+...+.. -...++++|+||+++....+ ...-.+..++.+|+||.|.+...
T Consensus 1007 ~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1007 LTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 8888765522 22347999999999876655 23444567889999999987443
No 183
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.41 E-value=5.3e-06 Score=77.23 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=88.4
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEE
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (354)
.++|+.++...+.++-.+|.|++|+|||++....+...... .....+++++.||..-+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~---- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT---- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc----
Confidence 58999999999999999999999999997654433322221 1223568889999998888888776543322210
Q ss_pred eCCcchHHhHHhhcCCCeEEEeCcHHHHHHH------hcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcE
Q 018574 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI------KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (354)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~------~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 209 (354)
......+ ..-..|..+++... .....+...+++|||||+-.+ -...+..+++.++++.++
T Consensus 230 ------~~~~~~~----~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~rl 295 (615)
T PRK10875 230 ------DEQKKRI----PEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHARV 295 (615)
T ss_pred ------hhhhhcC----CCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCEE
Confidence 0000000 01123333332211 111122335689999999876 356777788888888888
Q ss_pred EEEEee
Q 018574 210 VLISAT 215 (354)
Q Consensus 210 i~lSaT 215 (354)
|++.-.
T Consensus 296 IlvGD~ 301 (615)
T PRK10875 296 IFLGDR 301 (615)
T ss_pred EEecch
Confidence 887766
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.40 E-value=3e-06 Score=79.76 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 54 EKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
..+++.|.+++..++.. ...+|.||+|+|||.+....+.+.+..+ .++|+++|+..-++++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHhC
Confidence 35799999999998876 6789999999999977766666555433 36999999999999999888763
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.40 E-value=5.9e-06 Score=66.13 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=84.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhc---CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.+|+....+.++.=.+.. ++ -+++-|.++...+.+ |++.+.++-+|.|||.+.+..+...+..+ . .-+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg-~-~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADG-S-RLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCC-C-cEEEEEcC
Confidence 578888777777766644 34 789999999988876 57899999999999966555544444433 2 34667777
Q ss_pred CHHHHHHHHHHHHH-hccCcCeEEEEEeC--CcchHH----hHH----hhcCCCeEEEeCcHHHHHH
Q 018574 110 TRELATQTEKVILA-IGDFINIQAHACVG--GKSVGE----DIR----KLEHGVHVVSGTPGRVCDM 165 (354)
Q Consensus 110 ~~~l~~q~~~~~~~-~~~~~~~~~~~~~~--~~~~~~----~~~----~~~~~~~iiv~T~~~l~~~ 165 (354)
++|..|..+.+.. ++...+-.+..+.- ....+. ... .......|+++||+.+..+
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 6799999888875 44333433333322 222111 111 2234567999999988764
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.37 E-value=2.3e-06 Score=76.49 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=54.6
Q ss_pred CChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
.+.+-|..++...... .-.+++||||+|||.+....+.+.+..+ .++|++.|+..-++.+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhc
Confidence 5788899999887776 5679999999999998888888777655 459999999999999988653
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.37 E-value=5.2e-06 Score=77.14 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=86.6
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC--CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS--REVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.++|+.++...+.++-.+|.|++|+|||++....+........ ...++++++||-.-+..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 3789999999999999999999999999765444332221111 12469999999888888777765533222110
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHh------cCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCc
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK------RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~------~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~ 208 (354)
. .... ...+-..|..+++.... ........+++||+||+-.+ -...+..+++.++...+
T Consensus 224 ----~---~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 ----E---ALIA----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNTK 288 (586)
T ss_pred ----h---hhhh----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCCE
Confidence 0 0000 00111233333332211 11112335799999999876 34567778888888888
Q ss_pred EEEEEee
Q 018574 209 VVLISAT 215 (354)
Q Consensus 209 ~i~lSaT 215 (354)
+|++.-.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8876655
No 188
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.34 E-value=3.5e-06 Score=78.48 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=53.8
Q ss_pred CChHHHHHhHhhhhc----CCcEEEEcCCCCchhhHhHHHHhhcccc---------------------------------
Q 018574 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDT--------------------------------- 97 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~ii~~~tGsGKT~~~~~~~~~~~~~--------------------------------- 97 (354)
+|++-|...+..++. ..++++..|||+|||++.+-..++....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 889999988877765 5789999999999998776665543310
Q ss_pred CC------CceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 98 SS------REVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 98 ~~------~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
.. ..+++.|-.-|.+-..|+.+++++..-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 00 135677777788888999999987663
No 189
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.31 E-value=8.6e-05 Score=68.57 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=64.9
Q ss_pred CcEEEEcCchhhHHHHHHHHhcCC------------------CeEEEeecCCCHHHHHHHHHHHhCC---CCcEEEEccc
Q 018574 273 TQAVIFCNTKRKVDWLTEKMRGYN------------------FTVSSMHGDMPQKERDAIMGEFRSG---TTRVLITTDV 331 (354)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~l~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T~~ 331 (354)
.++|||.++.-...-+.+.|.++. .....++|..+..+|++.+++|.+- .+-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 478999999888888888886542 2244677888899999999999863 2457888999
Q ss_pred cccCCCcCCCcEEEecCCCCCC
Q 018574 332 WARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 332 ~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
..-|+++=.++.+|.||.-|++
T Consensus 800 g~lGinLIsanr~~ifda~wnp 821 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNP 821 (1387)
T ss_pred ccccceeeccceEEEEEeecCc
Confidence 9999999888888888887764
No 190
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.25 E-value=2.1e-06 Score=66.74 Aligned_cols=84 Identities=17% Similarity=0.326 Sum_probs=61.6
Q ss_pred HHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCC--eEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc--ccccCCCcCC
Q 018574 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNF--TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD--VWARGLDVQQ 340 (354)
Q Consensus 265 ~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~--~~~~Gidi~~ 340 (354)
++++..+ ++++||++|.+.++.+.+.++.... ...++.. +..++..+++.|++++..||+++. .+++|+|+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 4444444 8999999999999999999987531 1123332 356788899999999999999998 9999999995
Q ss_pred --CcEEEecCCCC
Q 018574 341 --AILFFFLFLFC 351 (354)
Q Consensus 341 --~~~Vi~~~~p~ 351 (354)
+++||..++|-
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 78899999995
No 191
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.20 E-value=4.8e-06 Score=68.58 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=40.8
Q ss_pred CccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC---chhHHHHHHhccCC
Q 018574 170 TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL---PHEILEMTTKFMTD 230 (354)
Q Consensus 170 ~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~---~~~~~~~~~~~~~~ 230 (354)
..+...+.++|+||||.|.... ...+.+.+...+....+++++.-+ +..+....+.|...
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk 186 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFK 186 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCC
Confidence 4455678999999999996654 446666667667777778777765 44455555555443
No 192
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.11 E-value=1.3e-05 Score=74.54 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=83.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc-----cCc-CeEEEEEeCCcchHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG-----DFI-NIQAHACVGGKSVGED 144 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~ 144 (354)
-++=|.+.||+|||++|+-.+.+.-..-+ -.+.+|+||+.++-.-+........ ..+ +.+...+..+......
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~ 153 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF 153 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH
Confidence 47889999999999999988776543222 2368999999998766433322111 111 2334444443333333
Q ss_pred HHhhcCCCeEEEeCcHHHHHH------HhcCCccC---------------CCccEEEEecchhhhccCcHHHHHHHHhhC
Q 018574 145 IRKLEHGVHVVSGTPGRVCDM------IKRKTLRT---------------RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (354)
Q Consensus 145 ~~~~~~~~~iiv~T~~~l~~~------~~~~~~~~---------------~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~ 203 (354)
..+..+.+.+++.+.+.+..- +....... ..-.+||+||-|.+... ...+..+...
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~~l- 230 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIKQL- 230 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHHhh-
Confidence 333445577777776655432 11100000 22358999999999764 2333344333
Q ss_pred CCCCcEEEEEeeCchhH
Q 018574 204 PPDLQVVLISATLPHEI 220 (354)
Q Consensus 204 ~~~~~~i~lSaT~~~~~ 220 (354)
...-++=++||.+.+.
T Consensus 231 -~pl~ilRfgATfkd~y 246 (985)
T COG3587 231 -NPLLILRFGATFKDEY 246 (985)
T ss_pred -CceEEEEecccchhhh
Confidence 2334677899986653
No 193
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.10 E-value=8.8e-06 Score=70.61 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=55.2
Q ss_pred ChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-CCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
+++-|.+++.. ..++++|.|++|||||.+.+.-+...+... ....++|++++|+..+..+.+++....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 57889999987 678999999999999998888877777655 345679999999999999999988754
No 194
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.08 E-value=9.9e-05 Score=64.00 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=83.7
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
++.+.+.||||.|||+..+-.+.......+.....+|-+.+--.+. .++++.+++..++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH--HHHHHHHHHHhCCce-----------------
Confidence 6788999999999998777666555533333445777777655443 355555554444433
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh-hccCcHHHHHHHHhhCCCCCcEEEEEeeCc-hhHHHHHHhc
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTTKF 227 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~-~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~-~~~~~~~~~~ 227 (354)
.++-+|.-|...+.. +.++++|.||=+-+- .+......+..+.....+-...+.+|||.. .++.+.+..|
T Consensus 264 ----~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 ----EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred ----EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 344455555444432 345588888855443 344456677777776655556788899984 4566667666
Q ss_pred cCCC
Q 018574 228 MTDP 231 (354)
Q Consensus 228 ~~~~ 231 (354)
..-+
T Consensus 336 ~~~~ 339 (407)
T COG1419 336 SLFP 339 (407)
T ss_pred ccCC
Confidence 5543
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.06 E-value=8.4e-05 Score=71.51 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=72.8
Q ss_pred CChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEE
Q 018574 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (354)
.+++.|.+++..+..+ +-++|.+++|+|||++.-. +...+... +.++++++||-.-+..+.+.. ++...
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~~--g~~V~~~ApTg~Aa~~L~~~~-------g~~a~ 421 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEAA--GYRVIGAALSGKAAEGLQAES-------GIESR 421 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHhC--CCeEEEEeCcHHHHHHHHhcc-------CCcee
Confidence 6899999999998874 6779999999999965443 33333322 456899999976665544321 12111
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhh-CCCCCcEEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY-LPPDLQVVLI 212 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~l 212 (354)
|..++..........+...++||+||+-.+.... +..+++. .....+++++
T Consensus 422 ------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~----~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 422 ------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQ----MARVLKEAEEAGAKVVLV 473 (744)
T ss_pred ------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHHH----HHHHHHHHHhcCCEEEEE
Confidence 2222211112222234567899999998874333 3344442 2245666665
Q ss_pred E
Q 018574 213 S 213 (354)
Q Consensus 213 S 213 (354)
.
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 5
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.04 E-value=7.1e-05 Score=73.24 Aligned_cols=126 Identities=19% Similarity=0.129 Sum_probs=76.4
Q ss_pred CCCCCChHHHHHhHhhhhcCC-cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 51 YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
.|+ .+++-|.+++..++.++ .+++.++.|+|||++ +-.+...+... +.+++.++||-.-+..+.+. .+
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~-------tG 411 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLEGG-------SG 411 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHhhc-------cC
Confidence 455 79999999999998854 579999999999975 33344333322 45689999987655544321 11
Q ss_pred eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhC-CCCCc
Q 018574 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQ 208 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~-~~~~~ 208 (354)
+.. .|..++..........+...++|||||+-.+.. ..+..+++.. +...+
T Consensus 412 i~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~gar 463 (988)
T PRK13889 412 IAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAK 463 (988)
T ss_pred cch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCE
Confidence 111 122222211111222345668999999997633 3444555433 34667
Q ss_pred EEEEEee
Q 018574 209 VVLISAT 215 (354)
Q Consensus 209 ~i~lSaT 215 (354)
++++.-+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 7766655
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.03 E-value=3.6e-05 Score=65.11 Aligned_cols=145 Identities=15% Similarity=0.212 Sum_probs=87.9
Q ss_pred HCCCCCChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccC
Q 018574 50 QYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (354)
-+|+......|.-+++.++.. .-+.+.++.|+|||..++.+.+......+.-.++++.=|+..+.+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI---------- 292 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI---------- 292 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc----------
Confidence 368878888999999998875 45788999999999998888887776665556677777776554321
Q ss_pred cCeEEEEEeCCcc--hHHhHHhhcCCCeEEE----eCcHHHHHHHhcCCccC----------CCccEEEEecchhhhccC
Q 018574 128 INIQAHACVGGKS--VGEDIRKLEHGVHVVS----GTPGRVCDMIKRKTLRT----------RAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~~~~~~~~~~iiv----~T~~~l~~~~~~~~~~~----------~~~~~vvvDE~h~~~~~~ 191 (354)
.++-|..+ ...+.+.+.+.-.+++ ++.+.+...+....+.. -.-.+||+|||+.+
T Consensus 293 -----GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL---- 363 (436)
T COG1875 293 -----GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL---- 363 (436)
T ss_pred -----CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----
Confidence 11111110 0000010000000000 11233333333322221 12368999999998
Q ss_pred cHHHHHHHHhhCCCCCcEEEEE
Q 018574 192 FKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~i~lS 213 (354)
....++.++.+..+..+++++.
T Consensus 364 TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcC
Confidence 6789999999998888766543
No 198
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=98.01 E-value=3e-05 Score=73.18 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=89.6
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHH
Q 018574 37 AMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (354)
Q Consensus 37 ~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (354)
...+.|.+.+.. ...++.-|++|+..++.. ...+|.|=||+|||......+...+..+ .++|+.+-|.+-++
T Consensus 655 ~~~~~p~~~~~~----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVD 727 (1100)
T KOG1805|consen 655 SKVLIPKIKKII----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVD 727 (1100)
T ss_pred ccccCchhhHHH----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHH
Confidence 355677776652 236788999999888774 5679999999999976665544444333 45899898988888
Q ss_pred HHHHHHHHhccCcCeEEEEEeCCcchHHhH-----------------HhhcCCCeEEEeCcHHHHHHHhcCCccCCCccE
Q 018574 116 QTEKVILAIGDFINIQAHACVGGKSVGEDI-----------------RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (354)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 178 (354)
.+.-.++.++ +....+..+.....+. .+..+.+.|+.+|---+. +..+..+.|++
T Consensus 728 NILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~----~plf~~R~FD~ 799 (1100)
T KOG1805|consen 728 NILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN----HPLFVNRQFDY 799 (1100)
T ss_pred HHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC----chhhhccccCE
Confidence 8888777655 4444343333333222 233345667777742222 12333467999
Q ss_pred EEEecchhhhc
Q 018574 179 LVLDESDEMLS 189 (354)
Q Consensus 179 vvvDE~h~~~~ 189 (354)
.|+|||-.+..
T Consensus 800 cIiDEASQI~l 810 (1100)
T KOG1805|consen 800 CIIDEASQILL 810 (1100)
T ss_pred EEEcccccccc
Confidence 99999998643
No 199
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.94 E-value=0.0002 Score=70.64 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHH
Q 018574 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (354)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (354)
++++.........++ .+++-|.+++..+.. ++-.++.|+.|+|||++.-. +...... .+.+++.++|+-.-+..+
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~--~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEA--AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHH--cCCeEEEEcCcHHHHHHH
Confidence 455555555444444 799999999998765 56689999999999964443 3333332 245689999987666554
Q ss_pred HHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHH
Q 018574 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (354)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~ 197 (354)
.+.. ++... |..++..........+...++|||||+..+. ...+.
T Consensus 442 ~e~~-------Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~ 486 (1102)
T PRK13826 442 EKEA-------GIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMA 486 (1102)
T ss_pred HHhh-------CCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHH
Confidence 4322 22221 2222211111112234456799999999773 34455
Q ss_pred HHHhhCC-CCCcEEEEEee
Q 018574 198 DVYRYLP-PDLQVVLISAT 215 (354)
Q Consensus 198 ~i~~~~~-~~~~~i~lSaT 215 (354)
.+++..+ .+.+++++.-+
T Consensus 487 ~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 487 LFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHhcCCEEEEECCH
Confidence 5555554 46677776655
No 200
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.88 E-value=0.00011 Score=64.87 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=48.3
Q ss_pred CCCCCChHHHHHhHhhhh----cCCcEEEEcCCCCchhhHhHHHHhhccccCC-CceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 51 YGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
+.+...+|-|.+-+..+. .+.++++.+|+|+|||.+.+..+.++..... .-.+.++..-|..-.+....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 445667888876665544 3679999999999999877777666554433 2345677666655445444444443
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.86 E-value=4.3e-05 Score=56.88 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhh
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
+++.++|.|++|+|||.+....+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 3567899999999999755554443
No 202
>PRK08181 transposase; Validated
Probab=97.83 E-value=0.00046 Score=57.76 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=63.7
Q ss_pred hHHHHHhHh----hhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 57 SAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 57 ~~~Q~~~~~----~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
.+.|..++. ++.+++++++.||+|+|||..+...+.+.+.. +..++++ +...|..+......
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~-~~~~L~~~l~~a~~---------- 154 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFT-RTTDLVQKLQVARR---------- 154 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeee-eHHHHHHHHHHHHh----------
Confidence 345554442 34467899999999999997666554444433 2335554 44455554432110
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-cHHHHHHHHhhCCCCCcEEE
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVL 211 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~ 211 (354)
. .+.+.+...+ .+.+++|+||.+...... ....+..+++......+++
T Consensus 155 -----~------------------~~~~~~l~~l-------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I- 203 (269)
T PRK08181 155 -----E------------------LQLESAIAKL-------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL- 203 (269)
T ss_pred -----C------------------CcHHHHHHHH-------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE-
Confidence 0 0111122222 256899999999764332 3455666666554444544
Q ss_pred EEeeCch
Q 018574 212 ISATLPH 218 (354)
Q Consensus 212 lSaT~~~ 218 (354)
+|+..+.
T Consensus 204 iTSN~~~ 210 (269)
T PRK08181 204 ITANQPF 210 (269)
T ss_pred EEcCCCH
Confidence 4444433
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.82 E-value=3e-05 Score=61.72 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.-.++.+|+|+|||..++..+...... +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 346889999999997777666555443 345777766
No 204
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.80 E-value=0.00015 Score=68.07 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=89.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCC------CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (354)
+.+|+.-..|-|||...+..++..-.... .....|++||+ ++..||..++.+..+...+.+...+|.. .+
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~gr~---kd 228 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHGRT---KD 228 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecccc---cc
Confidence 46899999999999887777665544433 44568888885 7788899888777766677777777711 11
Q ss_pred HHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchh
Q 018574 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (354)
Q Consensus 145 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~ 219 (354)
.....+++|+++|++.+.. ..+..-.+-.+|+||+|.+...... .....-.+....+ =++|+|+...
T Consensus 229 -~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~R-WcLtgtPiqn 295 (674)
T KOG1001|consen 229 -KSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYR-WCLTGTPIQN 295 (674)
T ss_pred -cchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeecccee-eeecCChhhh
Confidence 1123347899999988763 1222235667999999998666522 2222222323333 4568887543
No 205
>PRK06526 transposase; Provisional
Probab=97.77 E-value=0.00015 Score=60.20 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=58.5
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhH
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (354)
.+..++++++.||+|+|||..+.......+..+ .++++. ....+..+.. ...
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~-t~~~l~~~l~----~~~-------------------- 145 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA-TAAQWVARLA----AAH-------------------- 145 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh-hHHHHHHHHH----HHH--------------------
Confidence 344578999999999999976665555444332 335443 2233333322 110
Q ss_pred HhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-CcHHHHHHHHhhCCCCCcEEEEEeeCchh
Q 018574 146 RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (354)
Q Consensus 146 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~lSaT~~~~ 219 (354)
.. ++.. ..+.. ..+.++||+||+|..... .....+..++........+++.|..++..
T Consensus 146 ---~~------~~~~---~~l~~----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 146 ---HA------GRLQ---AELVK----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ---hc------CcHH---HHHHH----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 00 0111 11111 234689999999986432 22345556655433345566666665443
No 206
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00082 Score=59.24 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=70.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccC-CCceeEEEEc-CC-HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~-p~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (354)
+.+++.+|||+|||++..-.+....... ..+.++.++. .+ +.-+. +++..+....++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe-------------
Confidence 4689999999999987766654433221 2233344444 33 22222 2244444433443211
Q ss_pred hcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-cHHHHHHHHhhCCCC-CcEEEEEeeCchh-HHHHH
Q 018574 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPD-LQVVLISATLPHE-ILEMT 224 (354)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~~~~~~-~~~i~lSaT~~~~-~~~~~ 224 (354)
+.++..+...+.. ..+.++|++|++.+..... ....+..++.....+ ..++.+|||.... ....+
T Consensus 239 --------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 239 --------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 1133334333332 2467999999999875321 234555565555433 4678999998644 34444
Q ss_pred Hhc
Q 018574 225 TKF 227 (354)
Q Consensus 225 ~~~ 227 (354)
..+
T Consensus 307 ~~~ 309 (388)
T PRK12723 307 HQF 309 (388)
T ss_pred HHh
Confidence 554
No 207
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.75 E-value=0.00012 Score=58.33 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=72.3
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (354)
-+++.||||+|||+...-.+...... + ....++-+.+.-.+ -.++++.+.+..++.+.......+..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~-~~v~lis~D~~R~g--a~eQL~~~a~~l~vp~~~~~~~~~~~~-------- 70 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-G-KKVALISADTYRIG--AVEQLKTYAEILGVPFYVARTESDPAE-------- 70 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEESTSSTH--HHHHHHHHHHHHTEEEEESSTTSCHHH--------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-c-ccceeecCCCCCcc--HHHHHHHHHHHhccccchhhcchhhHH--------
Confidence 46889999999998877776665554 2 22234444322111 123444444444455443222211111
Q ss_pred CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhc
Q 018574 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (354)
Q Consensus 152 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~ 227 (354)
.+...++. ...+++++|++|-+-+... ......+..+.....+..-.+.++||...+.......+
T Consensus 71 ---------~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 71 ---------IAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp ---------HHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred ---------HHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 11111221 1123568899998865432 23456777777777777778999999987665544443
No 208
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.68 E-value=0.0007 Score=51.23 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
++.+++.||+|+|||......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 678999999999999644433
No 209
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.62 E-value=0.00027 Score=67.14 Aligned_cols=85 Identities=22% Similarity=0.197 Sum_probs=61.9
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC-CceeEEEEcCCHHHHHHHHHHHHHhccCc
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFI 128 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (354)
...-..+++-|++++.. ...+++|.|++|||||.+.+.-+.+.+.... .+.++|+++.++..+..+.+++.......
T Consensus 191 ~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 191 QVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred hccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 33335799999999854 3457899999999999888777766664432 34579999999999999999887654333
Q ss_pred CeEEEEEe
Q 018574 129 NIQAHACV 136 (354)
Q Consensus 129 ~~~~~~~~ 136 (354)
++.+.+++
T Consensus 269 ~v~v~TFH 276 (684)
T PRK11054 269 DITARTFH 276 (684)
T ss_pred CcEEEeHH
Confidence 44444443
No 210
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=0.00024 Score=53.42 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (354)
++.+++.+|+|+|||......+... .... ..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~-~~~~--~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL-GPPG--GGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc-CCCC--CCEEEECCEEccc
Confidence 5678999999999996554443332 2221 2367777655433
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.0012 Score=56.99 Aligned_cols=131 Identities=20% Similarity=0.290 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC---HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (354)
.-+++.+++|+|||+.....+... ... +.+++++... ..-..|+......+ ++.+.....+.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l-~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~d------- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYL-KKN--GFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGAD------- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-HHc--CCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCC-------
Confidence 357899999999998666555433 222 2345555432 34445555444433 333322111111
Q ss_pred hcCCCeEEEeCcHH-HHHHHhcCCccCCCccEEEEecchhhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHH
Q 018574 148 LEHGVHVVSGTPGR-VCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (354)
Q Consensus 148 ~~~~~~iiv~T~~~-l~~~~~~~~~~~~~~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~ 225 (354)
|.. +.+.++.. .....++|++|.+.++.. ......+..+.+...++..++.++|+..++......
T Consensus 207 -----------p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 207 -----------PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred -----------HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 111 11111110 113467999999998753 345667777777777788889999998877666665
Q ss_pred hcc
Q 018574 226 KFM 228 (354)
Q Consensus 226 ~~~ 228 (354)
.|.
T Consensus 274 ~f~ 276 (336)
T PRK14974 274 EFN 276 (336)
T ss_pred HHH
Confidence 553
No 212
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.53 E-value=0.00019 Score=68.55 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=56.6
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.+++-|.+++.+ ...+++|.|++|||||.+...-+...+.. +-+..++|+++.|+..+..+.+++....
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478999999876 35688999999999999888888777754 3344579999999999999999998754
No 213
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.42 E-value=0.015 Score=62.02 Aligned_cols=209 Identities=12% Similarity=0.128 Sum_probs=109.3
Q ss_pred CChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
.+++-|.+++..++.. +-.++.++.|+|||.+.- .+...+... +.+++.++|+..-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASEQ--GYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 6889999999998875 578999999999995433 333333322 4579999999877776665432111
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhC-CCCCcEEE
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVL 211 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~ 211 (354)
.+ .......+..+ .-..|.+.+. .....+...++|||||+-.+. ...+..+++.. +.+.++++
T Consensus 499 ~T------i~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ST------FITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred hh------HHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEE
Confidence 00 01111111111 1112333332 222333567899999999873 34555555544 35778888
Q ss_pred EEeeC------chhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchH-HHHHHHHhhC-CCCcEEEEcCchh
Q 018574 212 ISATL------PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF-DTLCDLYDTL-TITQAVIFCNTKR 283 (354)
Q Consensus 212 lSaT~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~-~~~~~lvf~~~~~ 283 (354)
+.-+- +-.....+...-.....+ .........+ .+....... .. .....++... ...+++|+..+.+
T Consensus 563 vGD~~QL~sV~aG~~f~~L~~~gv~t~~l--~~i~rq~~~v--~i~~~~~~~-r~~~ia~~y~~L~~~r~~tliv~~t~~ 637 (1960)
T TIGR02760 563 LNDSAQRQGMSAGSAIDLLKEGGVTTYAW--VDTKQQKASV--EISEAVDKL-RVDYIASAWLDLTPDRQNSQVLATTHR 637 (1960)
T ss_pred EcChhhcCccccchHHHHHHHCCCcEEEe--ecccccCcce--eeeccCchH-HHHHHHHHHHhcccccCceEEEcCCcH
Confidence 77662 112222333321111111 1110001111 111111111 22 2333333333 2235899999988
Q ss_pred hHHHHHHHHhc
Q 018574 284 KVDWLTEKMRG 294 (354)
Q Consensus 284 ~~~~l~~~l~~ 294 (354)
+...+....+.
T Consensus 638 dr~~Ln~~iR~ 648 (1960)
T TIGR02760 638 EQQDLTQIIRN 648 (1960)
T ss_pred HHHHHHHHHHH
Confidence 88877777754
No 214
>PHA02533 17 large terminase protein; Provisional
Probab=97.39 E-value=0.0017 Score=60.02 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=77.7
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe--EE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI--QA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~--~~ 132 (354)
.|.++|..++..+..++..++..+-..|||.+....++..+... ++..+++++|+..-+..+.+.++......+. ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 68999999998876677778999999999988776555444332 3457999999999888888877754433211 10
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
.... . ......+.+++.|.+.|.+ .....-....++++||+|.+.+
T Consensus 138 ~i~~-~---~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 138 GIVE-W---NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred ceee-c---CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC
Confidence 0000 0 0111223456666554432 1122234567899999997643
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0037 Score=54.65 Aligned_cols=129 Identities=13% Similarity=0.227 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC-C-H-HHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T-R-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p-~-~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (354)
+.+.+.||+|+|||+.....+...... +.++.++.. + + +...|+.. +....++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~RiaAvEQLk~----yae~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQD----YVKTIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHHHHH----HhhhcCCcE---------------
Confidence 467899999999998777665544322 233444443 2 2 33444443 222212211
Q ss_pred hcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-CcHHHHHHHHhhCCCCCcEEEEEeeCch-hHHHHHH
Q 018574 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTT 225 (354)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~lSaT~~~-~~~~~~~ 225 (354)
+...++..+.+.+....- ..++++|++|-+=+.... .....+..+++...+...++.+|||... +......
T Consensus 300 ------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 123355555544432110 124789999987664322 2334455555544455556779988654 5466665
Q ss_pred hcc
Q 018574 226 KFM 228 (354)
Q Consensus 226 ~~~ 228 (354)
.|.
T Consensus 373 ~F~ 375 (436)
T PRK11889 373 NFK 375 (436)
T ss_pred Hhc
Confidence 554
No 216
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.00044 Score=62.34 Aligned_cols=141 Identities=13% Similarity=0.156 Sum_probs=76.9
Q ss_pred EEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc-cCcCeEEEEEeCCcchH----HhHHhhc
Q 018574 75 AQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG-DFINIQAHACVGGKSVG----EDIRKLE 149 (354)
Q Consensus 75 i~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~ 149 (354)
..++||||||.+++..++.+...+-+ ..|+.|.....++....-+..-. ..+=+.-....++.... .......
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 46899999999888888887766543 47888887777765543331100 00000000011111110 0011133
Q ss_pred CCCeEEEeCcHHHHHHHhcCCcc------CCCcc-EEEEecchhhhccC-------------cHHHHHHHHhhCCCCCcE
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLR------TRAIK-LLVLDESDEMLSRG-------------FKDQIYDVYRYLPPDLQV 209 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~------~~~~~-~vvvDE~h~~~~~~-------------~~~~~~~i~~~~~~~~~~ 209 (354)
++..|.++|.+.|...+.+..-+ +.+.. +++-||+||+-... |...+..-+ ...++.-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~-~~nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL-EQNKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH-hcCCCcee
Confidence 45789999999998766542221 22333 45679999984321 222222222 22345567
Q ss_pred EEEEeeCch
Q 018574 210 VLISATLPH 218 (354)
Q Consensus 210 i~lSaT~~~ 218 (354)
+.+|||.+.
T Consensus 159 lef~at~~k 167 (812)
T COG3421 159 LEFSATIPK 167 (812)
T ss_pred ehhhhcCCc
Confidence 788999884
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.38 E-value=0.0021 Score=53.00 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
..+++.+++|+|||..+...+...... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 478999999999997665544444332 2345555
No 218
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.35 E-value=3.5e-05 Score=71.58 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhC---CCCcEEEEccccccC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS---GTTRVLITTDVWARG 335 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~T~~~~~G 335 (354)
+++++||.+-.+..+-+...+...+ ....++|......|...+..|.. ..++.|++|.+.+.|
T Consensus 631 ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 631 GHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred chhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3689999999999998888888777 88899999999999999999973 457789999987765
No 219
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.34 E-value=0.0017 Score=59.25 Aligned_cols=105 Identities=10% Similarity=0.252 Sum_probs=55.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
+.+++.||+|+|||...-.. ...+.....+.+++++ +...+..++...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai-~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~--------------------------- 199 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAI-GNYILEKNPNAKVVYV-TSEKFTNDFVNALRN--------------------------- 199 (450)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHc---------------------------
Confidence 46899999999999654433 3333333234456665 434554444333311
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-cHHHHHHHHhhCC-CCCcEEEEEeeCch
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLP-PDLQVVLISATLPH 218 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~lSaT~~~ 218 (354)
.+.+.+...+. +.++|++||+|.+.... ....+..++..+. ...+ ++++++.++
T Consensus 200 ------~~~~~~~~~~~-------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~-iiits~~~p 255 (450)
T PRK00149 200 ------NTMEEFKEKYR-------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ-IVLTSDRPP 255 (450)
T ss_pred ------CcHHHHHHHHh-------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc-EEEECCCCH
Confidence 01122222222 46799999999885432 2344444444433 2344 555666544
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0022 Score=56.09 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=83.3
Q ss_pred cCcccCCCCHHHHHHHHHC-C----CC---CChHHHHHhHhh-----------hhcCCcEEEEcCCCCchhhHhHHHHhh
Q 018574 33 TSFDAMGIKDDLLRGIYQY-G----FE---KPSAIQQRAVMP-----------IIKGRDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~-~----~~---~~~~~Q~~~~~~-----------~~~~~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
..+...|+++.+.+.+-+. . .. ..+.+....+.. +.+++.+++.+|||+|||+.....+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4456678888887776442 1 11 112333333222 112567899999999999877766655
Q ss_pred ccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccC
Q 018574 94 TVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT 173 (354)
Q Consensus 94 ~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~ 173 (354)
....... .++.+++ +.....--.++++.+....++.+... .++..+...+.. .
T Consensus 161 ~~~~~G~-~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~---------------------~~~~~l~~~l~~----l 213 (374)
T PRK14722 161 CVMRFGA-SKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAV---------------------KDGGDLQLALAE----L 213 (374)
T ss_pred HHHhcCC-CeEEEEe-cccccccHHHHHHHHHHHcCCceEec---------------------CCcccHHHHHHH----h
Confidence 4433211 2344433 22221122344444444334433222 223223222221 2
Q ss_pred CCccEEEEecchhhhcc-CcHHHHHHHHhhCCCCCcEEEEEeeCchhH-HHHHHhc
Q 018574 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEI-LEMTTKF 227 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~-~~~~~~~ 227 (354)
.+.++|+||.+-..... .....+..+.........++.++||...+. .+....|
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 34588999988654221 223333333332233445888999986654 3344444
No 221
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.32 E-value=0.00096 Score=65.21 Aligned_cols=148 Identities=15% Similarity=0.014 Sum_probs=91.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhcccc-----------C----CCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-----------S----SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~-----------~----~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
|+.+++.-..|.|||...+...+..... . .....+|||+|. ++..||.+++.+..... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 5678999999999997666544332211 0 112358999995 88999999998877554 56655
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccC---------------C-----CccEEEEecchhhhccCcHH
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRT---------------R-----AIKLLVLDESDEMLSRGFKD 194 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~---------------~-----~~~~vvvDE~h~~~~~~~~~ 194 (354)
..|=.+...........+|||++|+..|..-+.+..... + .+=.|++||++.+-.. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 555322221111223358999999999876554421110 0 1224899999987553 23
Q ss_pred HHHHHHhhCCCCCcEEEEEeeCchhHHH
Q 018574 195 QIYDVYRYLPPDLQVVLISATLPHEILE 222 (354)
Q Consensus 195 ~~~~i~~~~~~~~~~i~lSaT~~~~~~~ 222 (354)
...++...++.. ..=++|+||-..+..
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCchhhhhh
Confidence 444555555432 357789998665433
No 222
>PRK05642 DNA replication initiation factor; Validated
Probab=97.31 E-value=0.0017 Score=53.56 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=30.3
Q ss_pred CccEEEEecchhhhcc-CcHHHHHHHHhhCCCCCcEEEEEeeCch
Q 018574 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH 218 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~lSaT~~~ 218 (354)
..+++++|++|.+... .+...+..+++.+......+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4478999999987543 4566677777766554455777777654
No 223
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.30 E-value=0.0005 Score=66.53 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=57.5
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
..+++-|.+++.+ ...+++|.|.+|||||.+...-+...+.. +-+..++|+++.|+..+..+.+++.+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3689999999865 34689999999999999888877776654 3344579999999999999999998765
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.30 E-value=0.0075 Score=52.20 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
+.++++.||||+|||..+...+...+.. +..++++ +...+..+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEE-EHHHHHHHHH
Confidence 5789999999999997665544444432 3345554 4455555443
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=97.29 E-value=0.0012 Score=54.21 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=29.6
Q ss_pred CccEEEEecchhhhc-cCcHHHHHHHHhhCCC-CCcEEEEEeeCchh
Q 018574 175 AIKLLVLDESDEMLS-RGFKDQIYDVYRYLPP-DLQVVLISATLPHE 219 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~~-~~~~i~lSaT~~~~ 219 (354)
+.+++++||+|.+.. ..+...+..+++.... +.+++++|++.++.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 568999999998753 3345556666655543 34567778876554
No 226
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0029 Score=57.05 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhhHhHHHHhhc
Q 018574 73 VIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
.++.||+|+|||.++...+...
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6999999999997666554433
No 227
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.28 E-value=0.0038 Score=49.55 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=34.3
Q ss_pred EEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
+++.||+|+|||...+..+...+..+ .+++|++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEEC-CCCHHHHHHHHHHcC
Confidence 68999999999987776666665433 34777764 455666666666554
No 228
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.27 E-value=0.00056 Score=66.16 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
..+++-|.+++.+. ..+++|.|++|||||.+...-+...+.. +-...++|+++-|+..+..+.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 36899999998653 4689999999999999888877776653 3344579999999999999999998765
No 229
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.00057 Score=58.91 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=23.2
Q ss_pred ccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 176 ~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
-.++++||+|++...+ .+. ++..+ .+..++++.||-
T Consensus 105 ~tiLflDEIHRfnK~Q-QD~---lLp~v-E~G~iilIGATT 140 (436)
T COG2256 105 RTILFLDEIHRFNKAQ-QDA---LLPHV-ENGTIILIGATT 140 (436)
T ss_pred ceEEEEehhhhcChhh-hhh---hhhhh-cCCeEEEEeccC
Confidence 3679999999984433 222 23333 355688888884
No 230
>PRK08727 hypothetical protein; Validated
Probab=97.26 E-value=0.0017 Score=53.50 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
+.+++.||+|+|||...-..+.+.... +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEe
Confidence 459999999999996544433332222 33466654
No 231
>PRK06921 hypothetical protein; Provisional
Probab=97.25 E-value=0.0084 Score=50.40 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
+.++++.|++|+|||..+...+-+.+... +..++++.. .++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEH-HHHHHH
Confidence 56899999999999976554444333221 344666553 344443
No 232
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.25 E-value=0.002 Score=58.06 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=23.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
..+++.||+|+|||.... .+...+.....+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEE
Confidence 467999999999996553 3344443333345577764
No 233
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.25 E-value=0.00077 Score=64.85 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=55.7
Q ss_pred ChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
+++-|.+++.+ ...+++|.|++|||||.+.+.-+...+.. +....++|+|+.|+..+.++.+++.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899999865 35689999999999999888888877754 3344579999999999999999987654
No 234
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.22 E-value=0.0019 Score=58.55 Aligned_cols=108 Identities=10% Similarity=0.200 Sum_probs=59.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
+.+++.|++|+|||... ..+...+....++.+++++.+ ..+...+...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH------------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------------
Confidence 46899999999999544 344444444344556776555 555555554442100
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-CcHHHHHHHHhhCCCCCcEEEEEeeCch
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH 218 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~lSaT~~~ 218 (354)
...+.+... ..+.+++|+||+|.+... .....+..+++.+......+++|+..++
T Consensus 195 ------~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ------KEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ------hHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 001111111 125689999999988543 3445565665555433323555655444
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.19 E-value=0.0055 Score=47.28 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=25.2
Q ss_pred EEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHH
Q 018574 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (354)
+++.|++|+|||......+..... .+..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 578999999999766555444433 234577776654433
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.18 E-value=0.0027 Score=52.40 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=25.7
Q ss_pred ccEEEEecchhhhcc-CcHHHHHHHHhhCCC-CCcEEEEEeeCch
Q 018574 176 IKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVVLISATLPH 218 (354)
Q Consensus 176 ~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~lSaT~~~ 218 (354)
.+++++||+|.+... .+...+..+++.... +...+++|++.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 478999999998543 455566666655432 2223555666443
No 237
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.17 E-value=0.0033 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhh
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
.+..+++.||+|+|||..+...+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999765544433
No 238
>PRK12377 putative replication protein; Provisional
Probab=97.17 E-value=0.0049 Score=51.01 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHH
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (354)
.++++.||+|+|||..+...+-..+.. +..+++ ++..++..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEE-EEHHHHHHHHHH
Confidence 578999999999996555544444322 233444 454566665444
No 239
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.16 E-value=0.0018 Score=52.75 Aligned_cols=107 Identities=19% Similarity=0.333 Sum_probs=59.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
..+++.||+|+|||- .+.++...+....++.+++++.. .+......+.+..
T Consensus 35 ~~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH-LLQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRD--------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHH-HHHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHT---------------------------
T ss_pred CceEEECCCCCCHHH-HHHHHHHHHHhccccccceeecH-HHHHHHHHHHHHc---------------------------
Confidence 358999999999996 34444444443334556777654 2433333332211
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-CcHHHHHHHHhhCCC-CCcEEEEEeeCchh
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVVLISATLPHE 219 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~lSaT~~~~ 219 (354)
...+.+...+ ...+++++|+.|.+... .+...+..+++.+.. +.++++.|...|.+
T Consensus 86 ------~~~~~~~~~~-------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ------GEIEEFKDRL-------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ------TSHHHHHHHH-------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ------ccchhhhhhh-------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 1112222222 25789999999998654 345666666665533 44555555455443
No 240
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.16 E-value=0.0019 Score=48.37 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=47.9
Q ss_pred hHHHHHHHHhcCCC------eEEEeecCCCHHHHHHHHHHHhCCC-CcEEEEccccccCCCcCC--CcEEEecCCCC
Q 018574 284 KVDWLTEKMRGYNF------TVSSMHGDMPQKERDAIMGEFRSGT-TRVLITTDVWARGLDVQQ--AILFFFLFLFC 351 (354)
Q Consensus 284 ~~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~g~-~~vlv~T~~~~~Gidi~~--~~~Vi~~~~p~ 351 (354)
..++++..+++.+. ...++..+.+..+...+++.|++.. ..||+++..+++|+|+|+ +++||..++|-
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34555555555432 2234444445556788999998754 379999988999999996 57899999985
No 241
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.15 E-value=0.0018 Score=66.31 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=78.0
Q ss_pred ChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccC-cCeEEEE
Q 018574 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF-INIQAHA 134 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~-~~~~~~~ 134 (354)
.++-|.+++. ..+++++|.|+.|||||.+.+--++..+..+....++++++-|+..+..+.+++.+.... ..-
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 5889999997 358899999999999999888888877765533346999999999999998888764421 110
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHH-HhcCCccC-CCccEEEEecchh
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM-IKRKTLRT-RAIKLLVLDESDE 186 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~-~~~~~~~~-~~~~~vvvDE~h~ 186 (354)
..........+..-...-|+|...+... ++...... -...+=|.||...
T Consensus 76 ---~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ---EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ---CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0011111111222245567898887644 33321111 1123445887775
No 242
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.14 E-value=0.0012 Score=51.10 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=51.8
Q ss_pred EEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCe
Q 018574 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVH 153 (354)
Q Consensus 74 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (354)
++.|+-|-|||.+.-+.+...+..+. .+++|..|+.+-+....+.+..-....+++........ ...........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccccccce
Confidence 57899999999555444444433332 46999999998888777766544433333320000000 00000011244
Q ss_pred EEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 154 iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
|-+..|+.+... ....+++|||||=.+ -...+..+++ ....+++|.|.
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~----~~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLR----RFPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEB
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHh----hCCEEEEEeec
Confidence 555555544221 123589999999877 3455656644 33357778886
No 243
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0073 Score=54.31 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhcc-ccCCCceeEEEEc-CC-HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil~-p~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (354)
++.+++.+|||+|||+.....+.... ... +.++.++. .+ +.-+ .+++..+....++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~------------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE------------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHH---HHHHHHHHHHhCCceE-------------
Confidence 45689999999999987776555443 222 22344443 32 2111 1333333322222221
Q ss_pred hhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc-cCcHHHHHHHHhh-CCCCCcEEEEEeeCchh-HHHH
Q 018574 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRY-LPPDLQVVLISATLPHE-ILEM 223 (354)
Q Consensus 147 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~-~~~~~~~~~i~~~-~~~~~~~i~lSaT~~~~-~~~~ 223 (354)
.+.++..+...+.. ..++++|+||.+-.... ......+..++.. ..+....+++++|.... ....
T Consensus 283 --------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 283 --------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred --------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 12233444343332 22579999998855322 1233455555552 22334578899998654 4444
Q ss_pred HHhc
Q 018574 224 TTKF 227 (354)
Q Consensus 224 ~~~~ 227 (354)
...+
T Consensus 351 ~~~f 354 (424)
T PRK05703 351 YKHF 354 (424)
T ss_pred HHHh
Confidence 4444
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0026 Score=52.98 Aligned_cols=49 Identities=12% Similarity=0.329 Sum_probs=35.2
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
++.++++.||+|+|||..+.......+.. +. -+++++..++..++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~---g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA---GI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc---CC-eEEEEEHHHHHHHHHHHH
Confidence 57899999999999998776666655522 23 355567778887766654
No 245
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.12 E-value=0.0023 Score=57.46 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=81.0
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH-HHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
..++.++.|||||.+....++..+....++.+++++-++.. +...+...+......+++....-...... ...+..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---~i~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---EIKILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---EEEecC
Confidence 46889999999999888887777666434467888888775 66667777765544444322111111110 111222
Q ss_pred -CCeEEEeCc-HHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC--CCCcEEEEEeeCchhHHHHHHh
Q 018574 151 -GVHVVSGTP-GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLISATLPHEILEMTTK 226 (354)
Q Consensus 151 -~~~iiv~T~-~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~lSaT~~~~~~~~~~~ 226 (354)
+..|++... +...... ....++.+.+||+..+... .+..+...++ .....+++|.+|......+...
T Consensus 80 ~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~~~~ 150 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWVKKR 150 (396)
T ss_pred CCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHHHHH
Confidence 455666554 2222211 1123589999999998433 3333333333 2222478888886543334433
Q ss_pred c
Q 018574 227 F 227 (354)
Q Consensus 227 ~ 227 (354)
+
T Consensus 151 f 151 (396)
T TIGR01547 151 F 151 (396)
T ss_pred H
Confidence 3
No 246
>PF13173 AAA_14: AAA domain
Probab=97.11 E-value=0.0091 Score=44.12 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=27.7
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchh
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~ 219 (354)
.-.+|++||+|.+. ++...+..+.+.. ++.+ +.+|++....
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~-ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIK-IILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCce-EEEEccchHH
Confidence 45789999999984 5667888887754 3445 4455554443
No 247
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.11 E-value=0.0032 Score=64.63 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=45.1
Q ss_pred CChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHH--HhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALT--VCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~--~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
.+++.|.+++..++.+ +-++|.+..|+|||++.-.. ++..+. ...+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh-hccCceEEEEechHHHHHHHH
Confidence 7899999999999864 77899999999999764222 122221 123456888999877666553
No 248
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0059 Score=54.41 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
++.+.+.||+|+|||+.....+...+.......-.++...+.-.+ ..+++..++...++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v-------------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI-------------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC--------------
Confidence 567899999999999877655543332222222345555553322 2233444443334433222
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchh-HHHHHHhc
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHE-ILEMTTKF 227 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~-~~~~~~~~ 227 (354)
.++..+...+. .+...+.+++|.+=.... ......+..+.....+...+++++||.... ..+....|
T Consensus 255 -------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 255 -------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred -------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 12222222222 123557788887532211 112334444433233445678899997554 44445444
Q ss_pred c
Q 018574 228 M 228 (354)
Q Consensus 228 ~ 228 (354)
.
T Consensus 324 ~ 324 (420)
T PRK14721 324 Q 324 (420)
T ss_pred c
Confidence 3
No 249
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.10 E-value=0.0016 Score=48.93 Aligned_cols=68 Identities=7% Similarity=0.148 Sum_probs=46.5
Q ss_pred hHHHHHHHHhcCCC---eEEEeecCCCHHHHHHHHHHHhCCCC---cEEEEccc--cccCCCcCC--CcEEEecCCCC
Q 018574 284 KVDWLTEKMRGYNF---TVSSMHGDMPQKERDAIMGEFRSGTT---RVLITTDV--WARGLDVQQ--AILFFFLFLFC 351 (354)
Q Consensus 284 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~T~~--~~~Gidi~~--~~~Vi~~~~p~ 351 (354)
.++++++.+++.+. ...++.......+..++++.|++... .||+++.- +++|+|+|+ +++||.+++|-
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 45566666665433 12233333333455678888987543 69999976 999999996 68999999995
No 250
>PLN03025 replication factor C subunit; Provisional
Probab=97.10 E-value=0.0063 Score=52.85 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=25.5
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
+..++|+||+|.+.... ...+...+...+....+ +++++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~-il~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRF-ALACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceE-EEEeCC
Confidence 57899999999985443 45555666654444444 444443
No 251
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.04 E-value=0.0056 Score=63.74 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=45.1
Q ss_pred CChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccc--cCCCceeEEEEcCCHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~lil~p~~~l~~q~~ 118 (354)
.+++.|.+++..++.+ +-++|.+.+|+|||++.- .+...+. ....+.+++.++||-.-+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 7899999999999974 578999999999996543 2222221 1223456888999977666543
No 252
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.02 E-value=0.0058 Score=45.28 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.1
Q ss_pred ccEEEEecchhhhccC
Q 018574 176 IKLLVLDESDEMLSRG 191 (354)
Q Consensus 176 ~~~vvvDE~h~~~~~~ 191 (354)
..++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 5899999999986553
No 253
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=97.02 E-value=0.0055 Score=56.82 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=81.4
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCc--CeEEEEEeCCcchHHhHHh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NIQAHACVGGKSVGEDIRK 147 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 147 (354)
.+..++..|--.|||+... +++..+.....+.+++|.+|.+..++.+.+++....... +-.+.... |... ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk-Ge~I---~i~ 328 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK-GETI---SFS 328 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec-CcEE---EEE
Confidence 4567889999999997666 555555544456789999999999999999888765321 11111111 2111 112
Q ss_pred hcCC--CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 148 LEHG--VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 148 ~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
+.++ .-|.+++. .......-..++++|+|||+.+....+...+ ..+.. .+.+++++|.|
T Consensus 329 f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~ 389 (738)
T PHA03368 329 FPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSST 389 (738)
T ss_pred ecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecC
Confidence 2223 24445431 1122344567899999999998655444444 33222 47888999988
No 254
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.98 E-value=0.019 Score=53.73 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=47.4
Q ss_pred hHHHHHhHhhhh---cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 57 SAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 57 ~~~Q~~~~~~~~---~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
.|.=.+-++++. +.+-.++.+|-|-|||.+..+.+...+... +.+++|.+|...-+.++.+.+.....
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 444444444444 356778899999999977765555444322 46799999999988888887776654
No 255
>CHL00181 cbbX CbbX; Provisional
Probab=96.97 E-value=0.0053 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
+.++++.||||+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 446899999999999755544
No 256
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.96 E-value=0.0051 Score=56.58 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=81.8
Q ss_pred HHHHHhHhhhhc-----C----CcEEEEcCCCCchhhHhHHHHhhccc-cCCCceeEEEEcCCHHHHHHHHHHHHHhccC
Q 018574 58 AIQQRAVMPIIK-----G----RDVIAQAQSGTGKTSMIALTVCQTVD-TSSREVQALILSPTRELATQTEKVILAIGDF 127 (354)
Q Consensus 58 ~~Q~~~~~~~~~-----~----~~~ii~~~tGsGKT~~~~~~~~~~~~-~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (354)
|+|.-++..+.. | +.+++..|=|-|||......++..+. .+..+..++++++++.-+....+.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 567766665541 2 45789999999999877776665554 4556778999999999999999988876644
Q ss_pred cCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHH--hcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCC
Q 018574 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI--KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (354)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~--~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~ 205 (354)
.+....... ....+.. ...|.....+.+...+ ......-.+..++|+||+|...+......+..-... .+
T Consensus 81 ~~~l~~~~~------~~~~~~~-~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~-r~ 152 (477)
T PF03354_consen 81 SPELRKRKK------PKIIKSN-KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGA-RP 152 (477)
T ss_pred Chhhccchh------hhhhhhh-ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhcc-CC
Confidence 211110000 0000000 0112211111111111 112333456789999999998654333333333333 23
Q ss_pred CCcEEEEE
Q 018574 206 DLQVVLIS 213 (354)
Q Consensus 206 ~~~~i~lS 213 (354)
+++++.+|
T Consensus 153 ~pl~~~IS 160 (477)
T PF03354_consen 153 NPLIIIIS 160 (477)
T ss_pred CceEEEEe
Confidence 45555443
No 257
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.93 E-value=0.004 Score=52.37 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhhHhHHH
Q 018574 71 RDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~ 90 (354)
.++++.||+|+|||..+-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47899999999999655443
No 258
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.92 E-value=0.0032 Score=48.63 Aligned_cols=42 Identities=17% Similarity=0.365 Sum_probs=27.2
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
....++|+||+|.|... ....+.+.++.-+.+..++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 46889999999998544 3556666666655565555555444
No 259
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.91 E-value=0.0054 Score=55.12 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
.++++.||+|+|||.+.-. ++..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~-v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK-VFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhcCCcEEEEE
Confidence 5799999999999964433 33333322223344554
No 260
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.91 E-value=0.0096 Score=54.01 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=24.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+.+++.||+|+|||..+-.. ...+....++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai-~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSI-GNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHH-HHHHHHhCCCCeEEEEEH
Confidence 46899999999999655433 333333333456777654
No 261
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.0099 Score=51.54 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=30.6
Q ss_pred CChHHHHHhHhhhhcCC----cEEEEcCCCCchhhHhHHHHhhcc
Q 018574 55 KPSAIQQRAVMPIIKGR----DVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~----~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
.++|||...+..+.+.+ ..++.||.|.|||..+...+...+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 35789999998887643 468999999999976665544444
No 262
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.89 E-value=0.0022 Score=62.30 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=56.8
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-CCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
..+++-|.+++.+. ..+++|.|++|||||.+...-+.+.+... -...++|+++-|+..+..+.+++.+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 36899999999753 56899999999999998888877777543 233579999999999999999887664
No 263
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.88 E-value=0.0062 Score=54.36 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=26.5
Q ss_pred ChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHH
Q 018574 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
+......++..+..++++++.+|+|+|||..+-.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4445566677777899999999999999976543
No 264
>PRK08116 hypothetical protein; Validated
Probab=96.87 E-value=0.023 Score=47.85 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHH
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (354)
..+++.|++|+|||..+...+-..+.. +..++++ +...+...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEE-EHHHHHHHHHH
Confidence 359999999999997655443333322 2335444 44455544433
No 265
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.87 E-value=0.0026 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
.++++.+|+|.|||+.....+...+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 4899999999999987765554444
No 266
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.85 E-value=0.011 Score=56.10 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=23.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
.+++++||||+|.+....+ +.+.+.++.-+.+..+| +++|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FI-LaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFI-LATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEE-EEEC
Confidence 4678999999999854433 33444455444444444 4444
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=96.84 E-value=0.0088 Score=50.09 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=28.9
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
+.++.++++.||+|+|||..+.......... +..++++ +..++..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEE-eHHHHHHH
Confidence 4557899999999999997666554433332 3345554 33444443
No 268
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.84 E-value=0.0081 Score=57.77 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=65.8
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCCcCCCcEEE
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLDVQQAILFF 345 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~Vi 345 (354)
.+.+++|.+++...|.+.++.+++. ++++..++|+++..+|.+.++.+.+|+.+|+|+|. .+...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3468999999999999988887654 68899999999999999999999999999999996 555567888998887
Q ss_pred e
Q 018574 346 F 346 (354)
Q Consensus 346 ~ 346 (354)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.012 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~ 92 (354)
+..++.||.|+|||.++...+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4689999999999976665543
No 270
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.82 E-value=0.0075 Score=56.08 Aligned_cols=104 Identities=16% Similarity=0.274 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
+.+++.|++|+|||...-.. ...+.....+.+++++. ...+..++...+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AI-a~~a~~~~~g~~V~Yit-aeef~~el~~al~~--------------------------- 365 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAI-GHYARRLYPGTRVRYVS-SEEFTNEFINSIRD--------------------------- 365 (617)
T ss_pred CcEEEECCCCCCHHHHHHHH-HHHHHHhCCCCeEEEee-HHHHHHHHHHHHHh---------------------------
Confidence 35899999999999644433 33333322344566654 34555444333211
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-CcHHHHHHHHhhCCC-CCcEEEEEeeCc
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVVLISATLP 217 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~lSaT~~ 217 (354)
...+.+... ..+.++|+|||+|.+... .+...+..+++.+.. +.+++ +|+..+
T Consensus 366 ------~~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~II-ITSd~~ 420 (617)
T PRK14086 366 ------GKGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIV-LSSDRP 420 (617)
T ss_pred ------ccHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEE-EecCCC
Confidence 001112111 124689999999988653 234556666665544 45555 455543
No 271
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.80 E-value=0.022 Score=46.84 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=34.4
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
+..+..+++.+++|+|||......+...+.. +.++++++.. +-..+..+.+..++
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 3447789999999999997755555544433 3457777743 33344444444444
No 272
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.015 Score=56.58 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+++++||||+|.|.... .+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 467899999999995443 445556666655565555554
No 273
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0093 Score=57.65 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=16.0
Q ss_pred EEEEcCCCCchhhHhHHHHhh
Q 018574 73 VIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~ 93 (354)
.++.||+|+|||.++...+..
T Consensus 41 yLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 489999999999766554433
No 274
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.012 Score=53.31 Aligned_cols=46 Identities=11% Similarity=0.377 Sum_probs=26.3
Q ss_pred CccEEEEecchhhhcc-CcHHHHHHHHhhCC-CCCcEEEEEeeCchhH
Q 018574 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEI 220 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~lSaT~~~~~ 220 (354)
..+++++||+|.+... .....+..+++.+. ...++++.|...+.+.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDL 249 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHH
Confidence 5689999999998643 23445555554332 3445444443444443
No 275
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.77 E-value=0.0042 Score=51.08 Aligned_cols=86 Identities=21% Similarity=0.324 Sum_probs=64.0
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCc-chHHhHHhhc-CCCeEEEeCcHHHHHHHhcCCccCCCcc
Q 018574 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK-SVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (354)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 177 (354)
..|.+|||+.+.-.+..+...++.+.. -+..+..+...+ ...++...+. ....|.||||+++..+++.+.+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 357899999988888888887776631 112333344443 5555555555 3589999999999999999999999999
Q ss_pred EEEEecchh
Q 018574 178 LLVLDESDE 186 (354)
Q Consensus 178 ~vvvDE~h~ 186 (354)
+||+|-.|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998775
No 276
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.76 E-value=0.0011 Score=53.11 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
.++++.||+|.|||..+-
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 368999999999996443
No 277
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.76 E-value=0.011 Score=48.50 Aligned_cols=42 Identities=10% Similarity=0.276 Sum_probs=24.9
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCc-EEEEEeeCc
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ-VVLISATLP 217 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~-~i~lSaT~~ 217 (354)
..+++|+||+|.+... ....+..++........ +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4578999999987433 23445555544333333 466666654
No 278
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.75 E-value=0.013 Score=48.46 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=37.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.|..+++.+++|+|||..++..+...+..+ .+++|++- .+-..+..+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g---e~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CcEEEEEe-eCCHHHHHHHHHHhC
Confidence 367889999999999987777766665443 34788774 455566666666555
No 279
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.017 Score=53.98 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=17.7
Q ss_pred cEEEEcCCCCchhhHhHHHHhhcc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
-.++.||.|.|||.+....+....
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 359999999999976665544443
No 280
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.70 E-value=0.021 Score=50.15 Aligned_cols=40 Identities=8% Similarity=0.235 Sum_probs=25.1
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
...++||+||+|.+... ....+..++...+...++++ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 34579999999987433 34455666666555555554 443
No 281
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.011 Score=54.44 Aligned_cols=39 Identities=15% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+++++|+||+|.+....+ +.+.+.+..-+....+++.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3678999999999854433 34444555555555555544
No 282
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.015 Score=54.42 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
.+++++|+||+|.+.... .+.+.+.+..-+....+|+ ++|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FIL-aTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLF-ATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEE-EEC
Confidence 357899999999885443 3445455555444444444 444
No 283
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.67 E-value=0.017 Score=50.37 Aligned_cols=40 Identities=13% Similarity=0.342 Sum_probs=25.0
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
..+.+||+||++.+... ....+...+..-+.+..++ +++.
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~i-l~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFI-LITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEE-EEcC
Confidence 57899999999998543 2445555555444455444 4444
No 284
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.67 E-value=0.027 Score=51.18 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
++-+.+.||||+|||++....+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 45678999999999987776665443
No 285
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.029 Score=51.28 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=15.8
Q ss_pred EEEEcCCCCchhhHhHHHHh
Q 018574 73 VIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~ 92 (354)
.++.||+|+|||..+-..+-
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999976655443
No 286
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.66 E-value=0.043 Score=46.05 Aligned_cols=129 Identities=13% Similarity=0.222 Sum_probs=69.1
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC-C--HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T--RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p-~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (354)
..+.+.+++|+|||..+...+...... +.++.++.- + .....||....... ++.+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~~~~------------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVIA------------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhc----CceEEe-------------
Confidence 578999999999997666554433221 223444332 2 24556665443322 222211
Q ss_pred hcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCc-hhHHHHHH
Q 018574 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTT 225 (354)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~-~~~~~~~~ 225 (354)
..++..+...+..- -...++++|++|-+=+... ......+..+.....++..++.++||.. .+......
T Consensus 136 --------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 136 --------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred --------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 12333443333210 0113578999998866532 2234455555555555555778999875 45556666
Q ss_pred hcc
Q 018574 226 KFM 228 (354)
Q Consensus 226 ~~~ 228 (354)
.|.
T Consensus 207 ~f~ 209 (270)
T PRK06731 207 NFK 209 (270)
T ss_pred HhC
Confidence 654
No 287
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.64 E-value=0.018 Score=52.28 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=85.7
Q ss_pred CChHHHHHhHhhhhc------C----CcEEEEcCCCCchhhHhHHHHh-hccccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIK------G----RDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~------~----~~~ii~~~tGsGKT~~~~~~~~-~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
.+-|+|.-++..+.- + +.++|..|-+-|||..+...+. ..+.....+..+.|+.|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 678999999988772 1 3469999999999976663333 3344445667899999999988888887776
Q ss_pred hccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHH--hcCCccCCCccEEEEecchhhhccCcHHHHHHHHh
Q 018574 124 IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI--KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (354)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~--~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~ 201 (354)
...... ........-.....|...--......+ ........+..+.|+||.|.....+ ..+..+..
T Consensus 141 mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 141 MVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 543221 000000000000111111111111111 1134455678899999999986552 34444433
Q ss_pred hC--CCCCcEEEEEee
Q 018574 202 YL--PPDLQVVLISAT 215 (354)
Q Consensus 202 ~~--~~~~~~i~lSaT 215 (354)
-+ +++.+++++|..
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 33 345667776663
No 288
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.62 E-value=0.013 Score=49.93 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+.++++.||+|+|||.++-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999997653
No 289
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.024 Score=48.79 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCChHHHHHhHhhhhc----CC---cEEEEcCCCCchhhHhHHHHhhcc
Q 018574 54 EKPSAIQQRAVMPIIK----GR---DVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~~---~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
..++|+|..++..+.+ ++ -.++.||.|.||+..+...+...+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 4678899988887664 33 478999999999976665544443
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.59 E-value=0.014 Score=52.43 Aligned_cols=52 Identities=13% Similarity=0.335 Sum_probs=34.1
Q ss_pred cEEEEecchhhh-ccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhcc
Q 018574 177 KLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFM 228 (354)
Q Consensus 177 ~~vvvDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~ 228 (354)
++||+|.+-+.. +......+..+.....++.-++.++|+...+.......+.
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 789999994432 2234455666666666677788888888776655555543
No 291
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.58 E-value=0.015 Score=55.54 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=65.3
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCCcCCCcEEE
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLDVQQAILFF 345 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~Vi 345 (354)
.+.++++.++++.-|.+.++.+++. ++++..++|+++..+|...++...+|+.+|+|+|. .+...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3468999999999999988887653 78999999999999999999999999999999995 555677888888877
Q ss_pred e
Q 018574 346 F 346 (354)
Q Consensus 346 ~ 346 (354)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 292
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.57 E-value=0.0098 Score=48.87 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=36.7
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.|..+++.+++|+|||...+..+.+.+.+ +.+ +++++- .+-..++.+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~---vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEK---VLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEES-SS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCc---EEEEEe-cCCHHHHHHHHHHcC
Confidence 35778999999999998888877777766 543 777774 344466666665554
No 293
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0082 Score=51.74 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
+.++..+|+|+|||. ++.......+ .+.+-+.+..|...|.
T Consensus 246 kgvLm~GPPGTGKTl------LAKAvATEc~-tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTL------LAKAVATECG-TTFFNVSSSTLTSKWR 286 (491)
T ss_pred ceeeeeCCCCCcHHH------HHHHHHHhhc-CeEEEechhhhhhhhc
Confidence 579999999999994 4333332222 3566666666665544
No 294
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.039 Score=47.27 Aligned_cols=73 Identities=16% Similarity=0.328 Sum_probs=41.2
Q ss_pred ccCcccCC-CCHHHHHHHHH---CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 32 ITSFDAMG-IKDDLLRGIYQ---YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 32 ~~~~~~~~-~~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
..+|++.| +.+++. .+++ ....+|--++.--+ -.-+.+++.+|+|+||| +++...++..+.. .|=
T Consensus 147 dvtY~dIGGL~~Qi~-EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKT------LLAkAVA~~T~At-FIr 215 (406)
T COG1222 147 DVTYEDIGGLDEQIQ-EIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKT------LLAKAVANQTDAT-FIR 215 (406)
T ss_pred CCChhhccCHHHHHH-HHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHH------HHHHHHHhccCce-EEE
Confidence 45666764 444443 3333 33334444433332 33688999999999999 4555544444443 444
Q ss_pred cCCHHHHH
Q 018574 108 SPTRELAT 115 (354)
Q Consensus 108 ~p~~~l~~ 115 (354)
+...+|++
T Consensus 216 vvgSElVq 223 (406)
T COG1222 216 VVGSELVQ 223 (406)
T ss_pred eccHHHHH
Confidence 44556655
No 295
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.55 E-value=0.0045 Score=52.87 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchh
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~ 219 (354)
.+-.++++||+|++...+ .+. ++-.. .+.-++++.||-.+.
T Consensus 221 krkTilFiDEiHRFNksQ-QD~---fLP~V-E~G~I~lIGATTENP 261 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQ-QDT---FLPHV-ENGDITLIGATTENP 261 (554)
T ss_pred cceeEEEeHHhhhhhhhh-hhc---cccee-ccCceEEEecccCCC
Confidence 345789999999974332 111 12222 345578888885433
No 296
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.047 Score=42.69 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
++-.++.+|++||||...+..+..+...+ .++++..|...- ..+.....-+.|.+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g---~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~-------- 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAG---MKVLVFKPAIDT-------------RYGVGKVSSRIGLSS-------- 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcC---CeEEEEeccccc-------------ccccceeeeccCCcc--------
Confidence 34468899999999987777666555444 358888885321 111222222222221
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhh
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~ 202 (354)
.-+++-....+...+....... ..++|.+||++-+.. .....+..+.+.
T Consensus 60 --~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~-~~v~~l~~lad~ 108 (201)
T COG1435 60 --EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE-ELVYVLNELADR 108 (201)
T ss_pred --cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCH-HHHHHHHHHHhh
Confidence 2344445555555554432222 278999999997633 334555555554
No 297
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.53 E-value=0.035 Score=53.60 Aligned_cols=26 Identities=15% Similarity=0.613 Sum_probs=17.7
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHh
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYR 201 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~ 201 (354)
...+||+||+|.+.... ...+..+++
T Consensus 869 ~v~IIILDEID~L~kK~-QDVLYnLFR 894 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKT-QKVLFTLFD 894 (1164)
T ss_pred cceEEEeehHhhhCccH-HHHHHHHHH
Confidence 45689999999997542 344555544
No 298
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.52 E-value=0.015 Score=62.06 Aligned_cols=62 Identities=31% Similarity=0.408 Sum_probs=44.5
Q ss_pred CChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhH---HHHhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIA---LTVCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
.+++.|.+++..++.+ +-++|.++.|+|||++.- -++...... .+.+++.++||..-+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHH
Confidence 7899999999998864 567889999999997662 223333222 2456888999977666553
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.49 E-value=0.0095 Score=51.75 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=27.1
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
..++||+||+|.+........+..+++..+.+.++++ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE-EcC
Confidence 4579999999988433345666777777666666555 444
No 300
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.48 E-value=0.01 Score=51.12 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHHHCCCCCChHHHHHhHhhhh-cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 47 GIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~-~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
.+.+.|. +.+.|.+.+..+. .+.++++.|+||||||+.. -.++..+.......+++.+=...+|
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 3445544 4567776665544 4779999999999999644 4445554332233456666666665
No 301
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=96.47 E-value=0.0077 Score=56.46 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=92.4
Q ss_pred CChHHHHHhHhhhhc--------CC--cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 55 KPSAIQQRAVMPIIK--------GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~--------~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
.+...|.+++-..-+ |+ .++|-...|.||-....-.++.....+ .+++|++.-+..|-......+..+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchhhc
Confidence 567777777644332 22 457777777777765555555555544 346999999989988888888777
Q ss_pred ccCcCeEEEEEeC---CcchHHhHHhhcCCCeEEEeCcHHHHHHHhc--CC----------ccCCC-ccEEEEecchhhh
Q 018574 125 GDFINIQAHACVG---GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KT----------LRTRA-IKLLVLDESDEML 188 (354)
Q Consensus 125 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~----------~~~~~-~~~vvvDE~h~~~ 188 (354)
+.. ++.+..+.. +.-..++-... .-.|+++|+..|.-.... .. +.-.+ =++|||||||..-
T Consensus 342 gA~-~I~V~alnK~KYakIss~en~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 342 GAT-GIAVHALNKFKYAKISSKENTNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred CCC-CccceehhhcccccccccccCCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 633 344443321 00000000011 146899998776532221 00 11111 2689999999863
Q ss_pred c---------cCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 189 S---------RGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 189 ~---------~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
. ...+..+..+-+.+| +.+++.-|||-
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 2 125567777777774 66789999995
No 302
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.47 E-value=0.0078 Score=54.80 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=59.7
Q ss_pred cCCCCHHH-HHHHHHCCCCCC-------hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC---CceeEE
Q 018574 37 AMGIKDDL-LRGIYQYGFEKP-------SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQAL 105 (354)
Q Consensus 37 ~~~~~~~~-~~~l~~~~~~~~-------~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~l 105 (354)
+.+..+++ ...|++.--.++ -+-|.+++.. -.++-.+|+|..|||||.+++.-+.+.+...+ .+..+|
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vl 264 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVL 264 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceE
Confidence 34455554 445655433233 3334444421 23667899999999999999888777765432 223499
Q ss_pred EEcCCHHHHHHHHHHHHHhcc
Q 018574 106 ILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~ 126 (354)
|+.|.+.+..-+.+.+-.++.
T Consensus 265 vl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhchhhcc
Confidence 999999999999888877773
No 303
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.016 Score=55.44 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc-CCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (354)
++-+.+.+|+|+|||+++...+.......+ +.++.++. .+.-.+ ..++++.+....++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~--------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH--------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccchH--HHHHHHHHHHhCCCCcc---------------
Confidence 345789999999999877766554432221 12344443 222111 12333333333333221
Q ss_pred cCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc-CcHHHHHHHHhhCCCCCcEEEEEeeCchh-HHHHHHh
Q 018574 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHE-ILEMTTK 226 (354)
Q Consensus 149 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~lSaT~~~~-~~~~~~~ 226 (354)
++.+++.+...+.. ..+.++|+||=+=+.... .....+..+.....+...++.++||...+ +.+....
T Consensus 247 ------~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~ 316 (767)
T PRK14723 247 ------AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA 316 (767)
T ss_pred ------ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH
Confidence 22345555444442 224578888876654322 23344444444445566788888887543 3334444
Q ss_pred c
Q 018574 227 F 227 (354)
Q Consensus 227 ~ 227 (354)
|
T Consensus 317 f 317 (767)
T PRK14723 317 Y 317 (767)
T ss_pred H
Confidence 4
No 304
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.45 E-value=0.031 Score=53.70 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=64.2
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC-CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
+.++||.+++++.+.++.+.|++. +..+..+||+++..+|.+....+.+|+.+|+|+|.... -..++++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 468999999999999999999764 78899999999999999888889999999999996332 25577888887654
No 305
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.44 E-value=0.019 Score=48.61 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=31.1
Q ss_pred hHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 63 AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 63 ~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+..-+..|.-+++.|++|+|||......+...+... +.+++|+.-
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 334556678899999999999977766666554431 345777764
No 306
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.42 E-value=0.011 Score=57.30 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=59.0
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCch
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~ 218 (354)
...|+++||+.+..-+..+.+++..+..|||||||++........+..+++...+..-+.++|++|..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46899999999988888889999999999999999998776667777888877788889999999864
No 307
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.42 E-value=0.12 Score=40.29 Aligned_cols=53 Identities=11% Similarity=0.369 Sum_probs=29.7
Q ss_pred CccEEEEecchhhh-ccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhc
Q 018574 175 AIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (354)
Q Consensus 175 ~~~~vvvDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~ 227 (354)
..+++|+|...... +......+..+........-++.+.+.-..+.......+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 56789999888652 222334444444444455556677776555444444443
No 308
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.41 E-value=0.012 Score=53.07 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
.++++.||+|+|||..+-.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3789999999999965443
No 309
>PTZ00293 thymidine kinase; Provisional
Probab=96.39 E-value=0.027 Score=45.03 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
|+--++.||+++|||.-.+..+..+...+ .+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag---~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSE---KKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcC---CceEEEEecc
Confidence 45568899999999976666655554443 3488888864
No 310
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.38 E-value=0.036 Score=46.37 Aligned_cols=52 Identities=10% Similarity=0.208 Sum_probs=32.7
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS 99 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~ 99 (354)
+..+.+|+++++++-+.+.+.. ...-++|.+|||||||+ .+..++.++....
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKST-TlAamId~iN~~~ 153 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKST-TLAAMIDYINKHK 153 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHH-HHHHHHHHHhccC
Confidence 4556666666666555542221 12348999999999995 4555666665543
No 311
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.38 E-value=0.033 Score=42.53 Aligned_cols=134 Identities=21% Similarity=0.285 Sum_probs=73.3
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH---HHHHHHHHHHHhccCcCeEEEEEeCCc-----chHH
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE---LATQTEKVILAIGDFINIQAHACVGGK-----SVGE 143 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~---l~~q~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 143 (354)
-+.|..++|.|||.+++..++..+..+. +++++==.+. -.+ ...++++. ++.......+. +..+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~---~v~~vQFlKg~~~~gE--~~~l~~l~---~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGY---RVGVVQFLKGGWKYGE--LKALERLP---NIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEEeCCCCccCH--HHHHHhCC---CcEEEECCCCCccCCCChHH
Confidence 4567788899999999888887776553 4666322111 111 12233332 33333322211 1111
Q ss_pred hHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC--cHHHHHHHHhhCCCCCcEEEEEeeCchhHH
Q 018574 144 DIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEIL 221 (354)
Q Consensus 144 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~ 221 (354)
.... ......... ..+....+++||+||+-.....+ -.+.+..+++..+...-+++.+-.+++++.
T Consensus 76 ~~~~-----------a~~~~~~a~-~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~ 143 (159)
T cd00561 76 DIAA-----------AAEGWAFAK-EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELI 143 (159)
T ss_pred HHHH-----------HHHHHHHHH-HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 0000 001111111 12234578999999999876554 356777888888777777766666677666
Q ss_pred HHHH
Q 018574 222 EMTT 225 (354)
Q Consensus 222 ~~~~ 225 (354)
+...
T Consensus 144 e~AD 147 (159)
T cd00561 144 EAAD 147 (159)
T ss_pred HhCc
Confidence 6543
No 312
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.37 E-value=0.02 Score=48.16 Aligned_cols=116 Identities=16% Similarity=0.248 Sum_probs=58.1
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccC----CCceeEEEEcCCHHHHHHHHHHHHH-hccCcCeEEEEEeCCcchHHhH
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALILSPTRELATQTEKVILA-IGDFINIQAHACVGGKSVGEDI 145 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (354)
.+.++.|++|-|||...--....+-... ..-+-+++-+|...-...++..+-. ++.-..- ........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~-------~~~~~~~~ 134 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP-------RDRVAKLE 134 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC-------CCCHHHHH
Confidence 5789999999999974433332222111 1113455556766655555554432 3211100 00000000
Q ss_pred HhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC--cHHHHHHHHhhCCCC--CcEEEE
Q 018574 146 RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPD--LQVVLI 212 (354)
Q Consensus 146 ~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~--~~~~~~~i~~~~~~~--~~~i~l 212 (354)
.....+++ .-..+++||||+|+++... -.+.+...++.+.+. ..++++
T Consensus 135 --------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 135 --------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred --------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 01112222 2356899999999987543 234455555555544 344443
No 313
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.033 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhc
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
.|+.+.+.||+|+|||+.....+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36788899999999997765554433
No 314
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.038 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.0
Q ss_pred EEEEcCCCCchhhHhHHHHhhc
Q 018574 73 VIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
.++.||.|+|||.++...+...
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999997666554443
No 315
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.34 E-value=0.012 Score=56.21 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=52.0
Q ss_pred CChHHHHHhHhhhhc----C-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccC
Q 018574 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (354)
.|+..|..++..+.+ + +..++.+.+|+||++.+.. ++... +..+|||+|+...+.|+++.++.+...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL-----QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 799999999988764 2 2567999999999976543 22221 235999999999999999999888643
No 316
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.025 Score=50.10 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=15.6
Q ss_pred EEEEcCCCCchhhHhHHHHh
Q 018574 73 VIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~ 92 (354)
.++.||+|+|||..+...+-
T Consensus 41 ~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 58999999999976655443
No 317
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.31 E-value=0.034 Score=52.53 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.3
Q ss_pred EEEEcCCCCchhhHhHHHHhh
Q 018574 73 VIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~ 93 (354)
.++.||.|+|||.++...+..
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999766655443
No 318
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.30 E-value=0.013 Score=50.54 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=41.0
Q ss_pred HHHHHHCCCCCChHHHHHhHhhh-hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 45 LRGIYQYGFEKPSAIQQRAVMPI-IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~-~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
+..+.+.|. +.+.|.+.+... ..++++++.|+||+|||. ++-.++..+....+..+++++-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 344545554 356677777654 457899999999999995 444444443222233457776666655
No 319
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.30 E-value=0.021 Score=48.95 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=39.7
Q ss_pred HHHHHHCCCCCChHHHHHhHhh-hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 45 LRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
++.+.+.|. +.+.|.+.+.. +..++++++.|+||||||+.. -.++..+.......+++.+=...++
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 344444443 34445555544 445779999999999999544 4445555432233457777666665
No 320
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.28 E-value=0.027 Score=55.76 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=64.6
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCCcCCCcEEEe
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLDVQQAILFFF 346 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~Vi~ 346 (354)
+.+++|.++|...|.+.++.+++. ++++..+++..+..++.++++.+.+|+.+|+|+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 468999999999999999887753 67788899999999999999999999999999995 6666788888888775
No 321
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.054 Score=50.97 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=24.3
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
...+++||||+|.+.... .+.+.+.+..-+....+|+.+
T Consensus 131 a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 467899999999985433 334444455544555555544
No 322
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.27 E-value=0.026 Score=50.13 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+++.||+|+|||.+.-
T Consensus 41 ~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999995443
No 323
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.26 E-value=0.042 Score=50.79 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=63.8
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC-CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
+++++|.++++..+.++++.|++. +..+..+||+++..+|.+......+|+.+|+|+|...- =..++++..||.-+.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEECC
Confidence 468999999999999999999764 67889999999999999988888999999999996332 245778888876443
No 324
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.26 E-value=0.056 Score=49.74 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
...++.||+|+|||.++-..+...
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999997666554433
No 325
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.26 E-value=0.061 Score=45.42 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc-CC-HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (354)
+-+++.+|+|+|||+...-.+...... +.+++++. .+ +.-+ .+++..+....++.+.....+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~~~~~~~d-------- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVIKQKEGAD-------- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEEeCCCCCC--------
Confidence 457788999999998777666544322 33455554 32 2221 12333333333333321111111
Q ss_pred cCCCeEEEeCcHH-HHHHHhcCCccCCCccEEEEecchhhhc-cCcHHHHHHHHhhCC------CCCcEEEEEeeCchhH
Q 018574 149 EHGVHVVSGTPGR-VCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLP------PDLQVVLISATLPHEI 220 (354)
Q Consensus 149 ~~~~~iiv~T~~~-l~~~~~~~~~~~~~~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~------~~~~~i~lSaT~~~~~ 220 (354)
|.. ....+.. .....+++|++|=+-+... ......+..+.+..+ ++..++.++|+...+.
T Consensus 139 ----------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 139 ----------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred ----------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 111 1111111 1123568899997765432 233445666655544 5667888999977665
Q ss_pred HHHHHhcc
Q 018574 221 LEMTTKFM 228 (354)
Q Consensus 221 ~~~~~~~~ 228 (354)
......+.
T Consensus 207 ~~~~~~f~ 214 (272)
T TIGR00064 207 LEQAKVFN 214 (272)
T ss_pred HHHHHHHH
Confidence 55454444
No 326
>PRK05973 replicative DNA helicase; Provisional
Probab=96.25 E-value=0.016 Score=47.47 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=54.0
Q ss_pred ccCCCCHHHHHHHHHCCCC----------CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEE
Q 018574 36 DAMGIKDDLLRGIYQYGFE----------KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (354)
Q Consensus 36 ~~~~~~~~~~~~l~~~~~~----------~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~l 105 (354)
...++++.+-+...+.||. .++| ..+...-+..|.-++|.|+||+|||...+..+...+..+ .+++
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G---e~vl 96 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG---RTGV 96 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEE
Confidence 4456777777777777774 2333 122333444567889999999999987777766665433 3477
Q ss_pred EEcCCHHHHHHHHHHHHHhc
Q 018574 106 ILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~ 125 (354)
|++-- +-..|+.+.+..++
T Consensus 97 yfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 97 FFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred EEEEe-CCHHHHHHHHHHcC
Confidence 77543 33566666666554
No 327
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.24 E-value=0.035 Score=51.64 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=67.1
Q ss_pred HHHHHHhhC-CCCcEEEEcCchhhHHH----HHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccC
Q 018574 262 TLCDLYDTL-TITQAVIFCNTKRKVDW----LTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARG 335 (354)
Q Consensus 262 ~l~~~l~~~-~~~~~lvf~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~G 335 (354)
.+...+... .+.++.+..+|.=-|++ +.+.|...|+++..+.|.+....|.++++...+|+.+++|+|- .+...
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 333333333 34589999999555554 5555556699999999999999999999999999999999994 67779
Q ss_pred CCcCCCcEEEe
Q 018574 336 LDVQQAILFFF 346 (354)
Q Consensus 336 idi~~~~~Vi~ 346 (354)
+++.++..||.
T Consensus 380 V~F~~LgLVIi 390 (677)
T COG1200 380 VEFHNLGLVII 390 (677)
T ss_pred eeecceeEEEE
Confidence 99999988874
No 328
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.23 E-value=0.025 Score=52.86 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=87.4
Q ss_pred CChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHH-HHHHHhccCcCeE
Q 018574 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAIGDFINIQ 131 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~~~~ 131 (354)
..+|||.+.++.+... +.+++..++-+|||.+.+-.+...+.... ..+|++.|+...+..+. +++.-.......-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5789999999988764 58899999999999866666666655443 35899999999998887 4454433222110
Q ss_pred EEEEeC---CcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc----C-cHHHHHHHHhhC
Q 018574 132 AHACVG---GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----G-FKDQIYDVYRYL 203 (354)
Q Consensus 132 ~~~~~~---~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~----~-~~~~~~~i~~~~ 203 (354)
-..+.. ....+....+...+..+.+....+- ..+.....+++++||++.+... + .......=.+..
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf 167 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTF 167 (557)
T ss_pred HHHhCchhhcccCCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhh
Confidence 011111 1111111111122344443332111 2233456789999999998432 1 112222211222
Q ss_pred CCCCcEEEEEeeCchh
Q 018574 204 PPDLQVVLISATLPHE 219 (354)
Q Consensus 204 ~~~~~~i~lSaT~~~~ 219 (354)
.....+++..||...
T Consensus 168 -~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 168 -GSNRKILRISTPTIE 182 (557)
T ss_pred -ccCcEEEEeCCCCCC
Confidence 234467777777544
No 329
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.22 E-value=0.052 Score=46.63 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
++++++.||+|+|||..+...+...+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999976665544444
No 330
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.063 Score=50.29 Aligned_cols=39 Identities=13% Similarity=0.355 Sum_probs=23.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
....++|+||+|.+.... .+.+.+.+..-+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 467899999999985443 334444455444454444444
No 331
>PRK04195 replication factor C large subunit; Provisional
Probab=96.19 E-value=0.021 Score=52.65 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
.+.+++.||+|+|||..+-..
T Consensus 39 ~~~lLL~GppG~GKTtla~al 59 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHAL 59 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 467999999999999654433
No 332
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.078 Score=44.30 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
+.+++.+|+|+||+..+- ......+ .+.+-+.+..|+..|..+-+++..
T Consensus 167 rgiLLyGPPGTGKSYLAK------AVATEAn-STFFSvSSSDLvSKWmGESEkLVk------------------------ 215 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAK------AVATEAN-STFFSVSSSDLVSKWMGESEKLVK------------------------ 215 (439)
T ss_pred eeEEEeCCCCCcHHHHHH------HHHhhcC-CceEEeehHHHHHHHhccHHHHHH------------------------
Confidence 358999999999994322 2222222 367778888888877654443320
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC-------cHHHHHHHHhhC----CCCCcEEEEEeeCchh
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------FKDQIYDVYRYL----PPDLQVVLISATLPHE 219 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~-------~~~~~~~i~~~~----~~~~~~i~lSaT~~~~ 219 (354)
.|..+.+. ...++|++||++.+.... .++.=.+++-.+ ..+--++.+.||-.+.
T Consensus 216 ----------nLFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw 280 (439)
T KOG0739|consen 216 ----------NLFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW 280 (439)
T ss_pred ----------HHHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch
Confidence 11122221 255889999999886432 111111222222 2345688899997665
Q ss_pred HHH
Q 018574 220 ILE 222 (354)
Q Consensus 220 ~~~ 222 (354)
...
T Consensus 281 ~LD 283 (439)
T KOG0739|consen 281 VLD 283 (439)
T ss_pred hHH
Confidence 544
No 333
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.19 E-value=0.045 Score=52.11 Aligned_cols=93 Identities=16% Similarity=0.024 Sum_probs=74.0
Q ss_pred chHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcC-C-CeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccc
Q 018574 258 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY-N-FTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWA 333 (354)
Q Consensus 258 ~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 333 (354)
.|.+.+..+++.. .++.+||.++.+..+.++.+.|++. + ..+..+|+++++.+|.+......+|+.+|+|+|..+-
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 4666666666533 3567999999999999999999865 4 6799999999999999999999999999999996332
Q ss_pred cCCCcCCCcEEEecCCCC
Q 018574 334 RGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 334 ~Gidi~~~~~Vi~~~~p~ 351 (354)
=.-+++...||..+--.
T Consensus 252 -FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 252 -FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred -EeccCCCCEEEEEcCCc
Confidence 34567788888765443
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.088 Score=46.87 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=62.6
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc-CC-HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
-+++.+|+|+|||+.....+....... +.++.++. .+ +..+. .++..+....++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~--------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP--------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHH---HHHHHHHHhcCCCeee---------------
Confidence 478999999999987777665443222 22344433 32 22222 2333333222221110
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh-ccCcHHHHHHHHhhCC---CCCcEEEEEeeCch-hHHHHH
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLP---PDLQVVLISATLPH-EILEMT 224 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~-~~~~~~~~~~i~~~~~---~~~~~i~lSaT~~~-~~~~~~ 224 (354)
+..+..+...+. ....++|++|=+-... +......+..+++... +...++.++||... ......
T Consensus 285 ------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 285 ------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred ------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 011222222222 1356889999654432 2223445555555432 23467889999977 444444
Q ss_pred Hhc
Q 018574 225 TKF 227 (354)
Q Consensus 225 ~~~ 227 (354)
..+
T Consensus 354 ~~f 356 (432)
T PRK12724 354 KAY 356 (432)
T ss_pred HHh
Confidence 444
No 335
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.091 Score=46.07 Aligned_cols=128 Identities=15% Similarity=0.197 Sum_probs=64.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc-CCHH--HHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-PTRE--LATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p~~~--l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (354)
++.+++.+|+|+|||....-.+......+ .++.++. .+.- -..||....+ ..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~yae----~lgvpv~------------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGYAD----KLDVELI------------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHHhh----cCCCCEE-------------
Confidence 45678999999999987776665443332 2344443 3322 2445444332 2222211
Q ss_pred hhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh-ccCcHHHHHHHHhhCCCCCcEEEEEeeCch-hHHHHH
Q 018574 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMT 224 (354)
Q Consensus 147 ~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~-~~~~~~ 224 (354)
...+|+.+...+.... .....++|++|=+=+.. +......+..+.....++.-++.+|++... +.....
T Consensus 266 --------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 266 --------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred --------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 1234444433332111 11346788888665432 222344555555555454445667776543 444444
Q ss_pred Hh
Q 018574 225 TK 226 (354)
Q Consensus 225 ~~ 226 (354)
..
T Consensus 337 ~~ 338 (407)
T PRK12726 337 PK 338 (407)
T ss_pred Hh
Confidence 44
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.17 E-value=0.079 Score=50.63 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=37.5
Q ss_pred ccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCc
Q 018574 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (354)
Q Consensus 176 ~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~ 217 (354)
.=++|+|+.|.+.+......+..++++.|.+..+++.|-+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 358999999999999889999999999999999998888754
No 337
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.14 E-value=0.038 Score=50.22 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=35.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
|.-+++.+++|+|||...+..+...... +.+++|+.- .+-..|+.....+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEc-cccHHHHHHHHHHcC
Confidence 5578999999999997766665554422 345888775 344566666665554
No 338
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.13 E-value=0.1 Score=45.36 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=24.2
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
...+|++||+|.+.... ...+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45799999999885432 345556666655555555543
No 339
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.12 E-value=0.057 Score=44.44 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=33.2
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
..|..+++.+++|+|||..+...+...+.. +..++++.- .....++.+....++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 346788999999999997666555544433 334667664 333445444444443
No 340
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.11 E-value=0.021 Score=54.95 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=24.2
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchh
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~ 219 (354)
+..++|+||+|.+.... . ..++..+. +.+++++++|-.+.
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Q---daLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-Q---DALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH-H---HHHHHHhc-CceEEEEEecCCCh
Confidence 45689999999974332 2 22333332 45677788775443
No 341
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.061 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.2
Q ss_pred EEEEcCCCCchhhHhHHHHhh
Q 018574 73 VIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~ 93 (354)
.++.||+|+|||.++...+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 499999999999776554433
No 342
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.10 E-value=0.014 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVD 96 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~ 96 (354)
+.+++.+|||+|||+.....+.....
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999877666555443
No 343
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.10 E-value=0.0085 Score=47.05 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=28.0
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
+.+++++++.||+|+|||..+...+...+.. +..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEe-ecCceecc
Confidence 3457899999999999998766665555543 3345554 44455554
No 344
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.09 E-value=0.088 Score=41.81 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
...++.||+|.|||..+...+...+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999976655544433
No 345
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.071 Score=46.24 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=27.4
Q ss_pred hHHHHHhHhhhhc--C---CcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 57 SAIQQRAVMPIIK--G---RDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 57 ~~~Q~~~~~~~~~--~---~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
+|+|...|..+.. + ...++.||.|.|||..+...+-..+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 5777777777664 2 2478999999999976665544433
No 346
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.038 Score=48.85 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=29.9
Q ss_pred CccEEEEecchhhhcc-CcHHHHHHHHhhCCCCC-cEEEEEeeCchh
Q 018574 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDL-QVVLISATLPHE 219 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~-~~i~lSaT~~~~ 219 (354)
+.+++++|.++.+... .+...+..+++.+.... |+++.|..+|.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 4688999999998654 45667777777665544 555555444444
No 347
>PF05729 NACHT: NACHT domain
Probab=96.04 E-value=0.057 Score=41.64 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=17.9
Q ss_pred cEEEEcCCCCchhhHhHHHHhhcccc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDT 97 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~ 97 (354)
-++|.|++|+|||......+......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 47899999999996555444443333
No 348
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.044 Score=50.58 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=24.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
..+.++|+||+|.+.... .+.+...+..-++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 467899999999985433 344455555545555555544
No 349
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.049 Score=50.63 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.++.++|+||+|.+.... .+.+.+.+..-+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 467899999999985433 233444444444455555544
No 350
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.02 E-value=0.073 Score=44.68 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.|.-++|.+++|+|||...+..+...+..+ .+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~G---e~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRG---NPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCC---CcEEEEEe
Confidence 456789999999999987777766655433 34787773
No 351
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.02 E-value=0.063 Score=50.84 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+.+++||||+|.+.... .+.+.+.+..-+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 357899999999874433 334444455444555555544
No 352
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.078 Score=49.96 Aligned_cols=39 Identities=13% Similarity=0.371 Sum_probs=23.4
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+++++||||+|.+.... .+.+.+.+..-+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 467899999999885433 334444555444444444433
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.98 E-value=0.16 Score=45.56 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=64.4
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC--CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
-+.+.+++|+|||+...-.+...... +.+++++.. .+.-+. ++++.+....++.+.....+.+...-.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~---- 171 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIA---- 171 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHH----
Confidence 46899999999997776655543222 334555543 233222 333333333344433222221110000
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhc
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~ 227 (354)
.+.+.. +. ...+++||+|=+-+... ......+..+.+...++..++.++|+...+.......|
T Consensus 172 ---------~~~l~~-~~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 172 ---------SEGVEK-FK-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred ---------HHHHHH-HH-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 000101 11 12456777776654322 22445555555555566667778888766555555544
No 354
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.066 Score=49.67 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=24.3
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
....++|+||+|.+.... .+.+.+.+..-+....+++.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 356899999999985433 344445555544455555544
No 355
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.97 E-value=0.036 Score=43.56 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=76.4
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHh
Q 018574 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (354)
.....+.+..++|.|||.+++..++..+..+. +++++==.+.-.. ..+.+.+....++.......+.....
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~---- 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWET---- 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccC----
Confidence 35678999999999999999888888876664 3565543322110 11122221111233322221111000
Q ss_pred hcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc--HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHH
Q 018574 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (354)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~ 225 (354)
....--............ ..+....+++||+||+-...+.++ ...+..+++..|...-+|+..-.+|+++.+...
T Consensus 91 --~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 91 --QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred --CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 000000000111111111 223345789999999998877664 566777777777666666555555666655544
No 356
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.96 E-value=0.075 Score=46.97 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
|.-+++.+++|+|||...+..+...... +.+++|+.-. +-..|+..+..+++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHcC
Confidence 5678999999999997666665544332 2358887653 34556665555544
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=95.96 E-value=0.062 Score=48.37 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=19.6
Q ss_pred cEEEEcCCCCchhhHhHHHHhhcccc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDT 97 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~ 97 (354)
-+++.+++|+|||+...-.+......
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999998777666554433
No 358
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.95 E-value=0.011 Score=48.76 Aligned_cols=17 Identities=24% Similarity=0.630 Sum_probs=13.3
Q ss_pred EEEEcCCCCchhhHhHH
Q 018574 73 VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~ 89 (354)
++|.|++|+|||....-
T Consensus 1 ~vv~G~pGsGKSt~i~~ 17 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKK 17 (234)
T ss_pred CEEEcCCCCCHHHHHHH
Confidence 47899999999974433
No 359
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.13 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=17.7
Q ss_pred cEEEEcCCCCchhhHhHHHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
..++.+|.|+|||.++...+...
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc
Confidence 47889999999997776555444
No 360
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.16 Score=44.82 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=20.3
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhC
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~ 203 (354)
...-+||+||++.+..... ..+..+.+..
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 3456899999999987753 5555555544
No 361
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.90 E-value=0.16 Score=44.27 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=27.7
Q ss_pred hHHHHHhHhhhhc--C---CcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 57 SAIQQRAVMPIIK--G---RDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 57 ~~~Q~~~~~~~~~--~---~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
+|+|...+..+.+ + ...++.||.|.||+..+...+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 6778877777664 2 3568999999999976655544443
No 362
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.88 E-value=0.19 Score=38.97 Aligned_cols=142 Identities=17% Similarity=0.226 Sum_probs=66.5
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (354)
-+.+....|-|||++++-.++..+..+. +++++==.+.-. ...+.+.+....++.......+-........
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~---rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~---- 75 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGM---RVLIVQFLKGGR--YSGELKALKKLPNVEIERFGKGFVWRMNEEE---- 75 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT-----EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GGGHH----
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCC---EEEEEEEecCCC--CcCHHHHHHhCCeEEEEEcCCcccccCCCcH----
Confidence 3567778999999999888888876554 477776555411 1233333322222333222221100000000
Q ss_pred CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc--HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHH
Q 018574 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (354)
Q Consensus 152 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~ 225 (354)
.+ ....+....... ..+....+++||+||+-.....++ ...+..+++..+...-+++..-.+++++.+...
T Consensus 76 ~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 00 001111111111 233346789999999998877663 566777778777777766655556666666554
No 363
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.051 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.4
Q ss_pred cEEEEcCCCCchhhHhHHHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
..++.||.|+|||..+...+...
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999997666554433
No 364
>PRK04328 hypothetical protein; Provisional
Probab=95.87 E-value=0.11 Score=43.34 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=35.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.|..+++.+++|+|||...+..+...+..+. +++|++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEE-eeCCHHHHHHHHHHcC
Confidence 3567899999999999877777666655443 367766 3344555666665555
No 365
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.86 E-value=0.18 Score=44.83 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=63.7
Q ss_pred EEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH-HHHHH---HHHHHHhccC-cCeEEEEEeCCcchHHhHHhh
Q 018574 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQT---EKVILAIGDF-INIQAHACVGGKSVGEDIRKL 148 (354)
Q Consensus 74 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 148 (354)
++.++.|+|||.+....++..+........++++ ++.. +...+ ...+...... ............ ..+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK------IIL 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE------EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc------EEe
Confidence 4788999999999888777777666544455555 5554 44432 2233333322 122221111111 011
Q ss_pred cCCCeEEEeCcHHH--HHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC--chhHHHHH
Q 018574 149 EHGVHVVSGTPGRV--CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL--PHEILEMT 224 (354)
Q Consensus 149 ~~~~~iiv~T~~~l--~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~--~~~~~~~~ 224 (354)
.++..|.+.+.+.- ...++ -..++.+++||+-......+...+.......... ..+..|.|+ ........
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~p~~~~~~~~~~~ 147 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGS-IRMYISTPPNPGGWFYEIF 147 (384)
T ss_dssp TTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHHH
T ss_pred cCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCc-ceEEeecCCCCCCceeeee
Confidence 45566666663321 11122 2467899999988875554555554444433222 222445544 23334444
Q ss_pred HhccC
Q 018574 225 TKFMT 229 (354)
Q Consensus 225 ~~~~~ 229 (354)
.....
T Consensus 148 ~~~~~ 152 (384)
T PF03237_consen 148 QRNLD 152 (384)
T ss_dssp HHHHC
T ss_pred ehhhc
Confidence 43333
No 366
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.85 E-value=0.058 Score=54.76 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=63.7
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCCcCCCcEEE
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLDVQQAILFF 345 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~Vi 345 (354)
.+.+++|.++++..|.++++.+++. ++.+..+++..+..++..+++.+.+|+.+|+|+|. .+...+.+.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3568999999999999999988753 56788899999999999999999999999999995 555567778888877
Q ss_pred e
Q 018574 346 F 346 (354)
Q Consensus 346 ~ 346 (354)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 367
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.83 E-value=0.11 Score=42.89 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
|.-+++.+++|+|||......+...+.+ +.+++|+.-. +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 5678999999999997776665555443 3457777654 33455666665554
No 368
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.82 E-value=0.042 Score=48.47 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=18.8
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVD 96 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~ 96 (354)
-.++.||.|.||+..+...+-..+.
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4799999999999766655554443
No 369
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.022 Score=48.82 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=37.6
Q ss_pred CcccccCcccCCCCHHHHHHHHHCCCCCC-hHHHHHhHhhhhcCCcEEEEcCCCCchhhH
Q 018574 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKP-SAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~ 86 (354)
..+-..+|.+.|=-+.+++.+++.=+.++ +|-.-.-...+...+++++.+|+|+|||..
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTml 143 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTML 143 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHH
Confidence 44566889998877888888877533222 222111112222357899999999999943
No 370
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.13 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=17.5
Q ss_pred cEEEEcCCCCchhhHhHHHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
..++.||+|+|||.++...+-..
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999997766554433
No 371
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.79 E-value=0.068 Score=44.39 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=29.3
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+..|+-++|.|+||+|||...+..+...+... +.++++++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 44567889999999999976666666555442 335788873
No 372
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.035 Score=53.86 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=59.1
Q ss_pred hHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC----C-CeEEE-eecCCCHHHHHHHHHHHhCCCCcEEEEcc-c
Q 018574 259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY----N-FTVSS-MHGDMPQKERDAIMGEFRSGTTRVLITTD-V 331 (354)
Q Consensus 259 ~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~ 331 (354)
..-.+..+.-...++++++.++|.-.+.+.++.|... + ..+.. ||+.++..+++++++.|.+|+++|||+|. -
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3444444444555589999999999999999888754 2 33333 99999999999999999999999999995 4
Q ss_pred cccC
Q 018574 332 WARG 335 (354)
Q Consensus 332 ~~~G 335 (354)
+..-
T Consensus 192 L~k~ 195 (1187)
T COG1110 192 LSKR 195 (1187)
T ss_pred HHhh
Confidence 4433
No 373
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.11 Score=45.59 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
....++||||+|.+.... .+.+.+.++.-+....++++|..
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 467899999999985433 34555555554445555555533
No 374
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.77 E-value=0.065 Score=49.20 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhhHh
Q 018574 70 GRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~ 87 (354)
.+.+++.||+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 568999999999999643
No 375
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.77 E-value=0.12 Score=43.61 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=22.0
Q ss_pred ChHHHHHhHhhhh----cCC-cEEEEcCCCCchhhHhHH
Q 018574 56 PSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~-~~ii~~~tGsGKT~~~~~ 89 (354)
+++.+.+++..+. .+. .+++.||+|+|||+..-.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 3445555555442 233 578999999999965543
No 376
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.70 E-value=0.15 Score=48.66 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=86.6
Q ss_pred HHHHHCCCCCChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 018574 46 RGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
+.+......+...-|.+.+..+++. +-+++.|+-|=|||.+.=+++ ..+.......+++|..|+.+-++...+.+.+
T Consensus 205 ~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 205 RELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLAGSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred HHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhcCCceEEEeCCCHHHHHHHHHHHHH
Confidence 3354444545556666677777764 368999999999996554444 2322222145699999999988888887766
Q ss_pred hccCcCeEEEEEeCCc-chHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhh
Q 018574 124 IGDFINIQAHACVGGK-SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (354)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~ 202 (354)
-....+.+........ .... ...+...|=+.+|.... ..-+++|||||=.+ -...+..+...
T Consensus 284 ~l~~lg~~~~v~~d~~g~~~~---~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~ 346 (758)
T COG1444 284 GLEFLGYKRKVAPDALGEIRE---VSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRR 346 (758)
T ss_pred hHHHhCCccccccccccceee---ecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhh
Confidence 5555544322211110 0000 00111234445554332 11488999999876 45566666553
Q ss_pred CCCCCcEEEEEeeC
Q 018574 203 LPPDLQVVLISATL 216 (354)
Q Consensus 203 ~~~~~~~i~lSaT~ 216 (354)
. +.+++|.|.
T Consensus 347 ~----~rv~~sTTI 356 (758)
T COG1444 347 F----PRVLFSTTI 356 (758)
T ss_pred c----CceEEEeee
Confidence 2 368889997
No 377
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.11 Score=47.90 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=74.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCC--hHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKP--SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
..+|++.|--+++...|...= ..| +|-+.+++- +-....+++++|+|.|||+ ++....+..+.. .|-+-
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI-~~PiK~pd~~k~lG-i~~PsGvLL~GPPGCGKTL------lAKAVANEag~N-FisVK 577 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAI-LAPIKRPDLFKALG-IDAPSGVLLCGPPGCGKTL------LAKAVANEAGAN-FISVK 577 (802)
T ss_pred CCChhhcccHHHHHHHHHHHH-hhhccCHHHHHHhC-CCCCCceEEeCCCCccHHH------HHHHHhhhccCc-eEeec
Confidence 357777777777776665531 122 222333331 1225679999999999994 444333332222 33344
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
.-+|..-+.-+-+ +-.+...+ .-..+...+|+|||.|.+..
T Consensus 578 GPELlNkYVGESE--------------------------------------rAVR~vFq-RAR~saPCVIFFDEiDaL~p 618 (802)
T KOG0733|consen 578 GPELLNKYVGESE--------------------------------------RAVRQVFQ-RARASAPCVIFFDEIDALVP 618 (802)
T ss_pred CHHHHHHHhhhHH--------------------------------------HHHHHHHH-HhhcCCCeEEEecchhhcCc
Confidence 4455443322211 11111110 11123568899999999852
Q ss_pred c-------CcHHHHHHHHhhC---CCCCcEEEEEeeCchhH
Q 018574 190 R-------GFKDQIYDVYRYL---PPDLQVVLISATLPHEI 220 (354)
Q Consensus 190 ~-------~~~~~~~~i~~~~---~~~~~~i~lSaT~~~~~ 220 (354)
. ...+.++.++..+ .....+..+.||-.+++
T Consensus 619 ~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 619 RRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred ccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 2 2345555555544 33456888889966653
No 378
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.65 E-value=0.026 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=28.6
Q ss_pred hHHHHHhHhhhhcCC--cEEEEcCCCCchhhHhHHHHhhccccC
Q 018574 57 SAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~ 98 (354)
.+.|...+..+++.. -+++.||||||||+... .++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY-~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLY-AALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH-HHHHHhcCC
Confidence 677777777777643 46899999999996444 445555444
No 379
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.63 E-value=0.021 Score=53.47 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~l 212 (354)
++-+++|+||+-.-+|......+.+.+....++.-++.+
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 566789999998887776666666666655444444443
No 380
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.62 E-value=0.15 Score=49.58 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
..+.++.||+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999996443
No 381
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.62 E-value=0.14 Score=39.66 Aligned_cols=142 Identities=14% Similarity=0.197 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
.-+.+..++|.|||.+++-.++..+..+. +++++==.+.-.. ..+.+.+.. .++.......+-.... .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~---~v~ivQFlKg~~~--~GE~~~l~~-~~~~~~~~g~g~~~~~------~ 73 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGK---KVGVIQFIKGAWP--NGERAAFEP-HGVEFQVMGTGFTWET------Q 73 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCcc--cChHHHHHh-cCcEEEECCCCCeecC------C
Confidence 35678889999999998888887776554 3655522111100 011111111 1233332222211000 0
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc--HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHH
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~ 225 (354)
+..--............ ..+....+++||+||+-.....++ .+.+..+++..|...-+++..-.+|+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~a~-~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 74 NREADTAIAKAAWQHAK-EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CcHHHHHHHHHHHHHHH-HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 00000000111111111 122345789999999998876653 456777778777777766655556666666554
No 382
>PRK06620 hypothetical protein; Validated
Probab=95.61 E-value=0.038 Score=44.87 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
+.+++.||+|+|||...-
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999996443
No 383
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.61 E-value=0.033 Score=49.07 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=24.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.+..+++.+|||||||+.. ..++..+.......+++.+=.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~IvtiEd 187 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTYED 187 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEec
Confidence 3457899999999999644 445555543322334554433
No 384
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.60 E-value=0.22 Score=42.53 Aligned_cols=132 Identities=17% Similarity=0.293 Sum_probs=77.7
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (354)
-+++.+-.|+|||+...-.+......+ .++++.+- -....--.++++.+++..+..+..-..|.+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA~-DTFRAaAiEQL~~w~er~gv~vI~~~~G~D----------- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAAG-DTFRAAAIEQLEVWGERLGVPVISGKEGAD----------- 205 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCC---CeEEEEec-chHHHHHHHHHHHHHHHhCCeEEccCCCCC-----------
Confidence 368899999999987776666555433 33555443 222222345555555555566554222221
Q ss_pred CeEEEeCcHHH-HHHHhcCCccCCCccEEEEecchhhhcc-CcHHHHHHHHhhCCCCC------cEEEEEeeCchhHHHH
Q 018574 152 VHVVSGTPGRV-CDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDL------QVVLISATLPHEILEM 223 (354)
Q Consensus 152 ~~iiv~T~~~l-~~~~~~~~~~~~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~~~~~------~~i~lSaT~~~~~~~~ 223 (354)
|..+ ++.++. -..+++++|++|=|-++... .....+.++.+.+.+.. -++.+-||..++....
T Consensus 206 -------pAaVafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 206 -------PAAVAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -------cHHHHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 2111 122221 11246788999988887654 46677778877776554 4556689998877666
Q ss_pred HHhc
Q 018574 224 TTKF 227 (354)
Q Consensus 224 ~~~~ 227 (354)
.+.|
T Consensus 277 Ak~F 280 (340)
T COG0552 277 AKIF 280 (340)
T ss_pred HHHH
Confidence 6554
No 385
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.038 Score=46.61 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccc---cCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVD---TSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~---~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
++-+++.||||+|||. ..-++.+.+. .+......+|=....+|-..|..+-
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES 230 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES 230 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh
Confidence 4568999999999995 3333344332 1222234566666666666555443
No 386
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.60 E-value=0.043 Score=50.87 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=34.3
Q ss_pred cCcccccCcccCCCCHHHHHHHHHCC--CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHh
Q 018574 27 EGVEAITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~ 87 (354)
....+..+|++++-.+...+.+.+.- +..+..++..- ....+++++.+|+|+|||..+
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 34456778888876666666554421 22222222211 122467999999999999543
No 387
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.09 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=16.7
Q ss_pred cEEEEcCCCCchhhHhHHHHhh
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
..++.||.|+|||.++-..+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999766655433
No 388
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.59 E-value=0.045 Score=46.80 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCCCCChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 51 YGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
..+..+++.|-..+..+... .++++.+.||||||+..- .+...+.... +++.+=.+.+|.-+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLN-al~~~i~~~e---RvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLN-ALSGFIDSDE---RVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHH-HHHhcCCCcc---cEEEEeehhhhccC
Confidence 34557788888887776665 599999999999996332 2233333232 57777777666543
No 389
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.13 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.2
Q ss_pred cEEEEcCCCCchhhHhHHHHh
Q 018574 72 DVIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~ 92 (354)
..++.||+|+|||.++...+-
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 358999999999976665543
No 390
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.57 E-value=0.25 Score=48.20 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
..+.++.||+|+|||..+-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4589999999999996543
No 391
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.1 Score=45.49 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=28.1
Q ss_pred ChHHHHHhHhhhhc----CC---cEEEEcCCCCchhhHhHHHHhhcc
Q 018574 56 PSAIQQRAVMPIIK----GR---DVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~----~~---~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
++|||...+..+.+ ++ -.++.||.|.||+..+...+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 46777777776653 33 468999999999976665554444
No 392
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.45 E-value=0.12 Score=46.54 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=18.3
Q ss_pred cEEEEcCCCCchhhHhHHHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
-+++.+++|+|||++..-.+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999998776666553
No 393
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.45 E-value=0.096 Score=48.36 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc-cCcCeE-EEEEeCCcchHHhHHhh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG-DFINIQ-AHACVGGKSVGEDIRKL 148 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 148 (354)
+-.+..-|-..||| +++.|++..+...-.+.++.|+++-+-..+-+.+++..-. .-++-+ +....
T Consensus 203 kaTVFLVPRRHGKT-Wf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k------------ 269 (668)
T PHA03372 203 KATVFLVPRRHGKT-WFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK------------ 269 (668)
T ss_pred cceEEEecccCCce-ehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec------------
Confidence 45677889999999 6777788777777778899999998876666555543211 111111 11111
Q ss_pred cCCCeEEEeCcH-----HHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC-CCCcEEEEEee
Q 018574 149 EHGVHVVSGTPG-----RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISAT 215 (354)
Q Consensus 149 ~~~~~iiv~T~~-----~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~lSaT 215 (354)
+.-|.+.-|+ .+..........-+.+++++|||+|-+- ...+..++..+. ++.++|++|.|
T Consensus 270 --~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 270 --DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 1112222111 0111122234556789999999999773 334444444443 56778888877
No 394
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.44 E-value=0.19 Score=50.56 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=34.4
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCc
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~ 217 (354)
.--+||+|++|.+.+......+..+++..+.+..+++.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3467999999998666667788888998888888888777643
No 395
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.23 Score=45.05 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=28.6
Q ss_pred ccCcccCC---CCHHHHHHHHHCCCCCChHHHHHhHhhh--hcCCcEEEEcCCCCchhh
Q 018574 32 ITSFDAMG---IKDDLLRGIYQYGFEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTS 85 (354)
Q Consensus 32 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~Q~~~~~~~--~~~~~~ii~~~tGsGKT~ 85 (354)
.=+|+++| ++.+.-+.+.+.--....| .+.++.+ ..=+.+++.+|+|+|||+
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFp--p~vie~lGi~HVKGiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFP--PEVIEQLGIKHVKGILLYGPPGTGKTL 271 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCC--HHHHHHcCccceeeEEEECCCCCChhH
Confidence 34566665 5666666555432111111 2223221 112678999999999995
No 396
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.17 Score=43.83 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=26.9
Q ss_pred ChHHHHHhHhhhhc----CC---cEEEEcCCCCchhhHhHHHHhhcc
Q 018574 56 PSAIQQRAVMPIIK----GR---DVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~----~~---~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
.+|+|...+..+.+ |+ -.++.||.|.||+..+...+...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 35677766665543 33 467999999999976665554444
No 397
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.42 E-value=0.27 Score=43.94 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHH
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILE 222 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~ 222 (354)
.+..++||||+|.+.... .+.+.+.++.-+ ...++++++|-+..+..
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~-~~~~fIL~a~~~~~llp 162 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPP-PRTVWLLCAPSPEDVLP 162 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCC-CCCeEEEEECChHHChH
Confidence 466899999999995443 234444444333 33455555554444443
No 398
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.40 E-value=0.032 Score=47.98 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
.|+-+.|.+|+|+|||...+..+...... +.+++|+-.-.++..+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPV 98 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHHH
Confidence 35678899999999998777766665543 3457777665554443
No 399
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.40 E-value=0.04 Score=48.83 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=41.0
Q ss_pred CChHHHHHhHhhh------hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 55 KPSAIQQRAVMPI------IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 55 ~~~~~Q~~~~~~~------~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
++++-|+++++.+ .++..+++.|+.|+|||+.+-... ..+.. .+..+++++||-.-|..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~-~~~~~--~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAII-DYLRS--RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHH-HHhcc--ccceEEEecchHHHHHh
Confidence 3678899998888 568899999999999996544332 22222 24468888887654443
No 400
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.12 Score=48.94 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
...++.||.|+|||.++...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 356999999999997666554443
No 401
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.35 E-value=0.037 Score=48.20 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=29.2
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (354)
+..++++++.||||||||+ ++-.++..+... .+++.+=.+.++.
T Consensus 159 v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~~---~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTT-MSKTLISAIPPQ---ERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHH-HHHHHHcccCCC---CCEEEECCCcccc
Confidence 4457899999999999995 444455555432 3466666666553
No 402
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.34 E-value=0.43 Score=40.85 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=31.5
Q ss_pred HHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC---CCCcEEEEEeeC
Q 018574 161 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP---PDLQVVLISATL 216 (354)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~---~~~~~i~lSaT~ 216 (354)
.++..+..+....+.--++|+||+|......-...+..+++.-. ....++++|..+
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 44444554444444446788999998876655555555555443 233344544443
No 403
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.11 Score=48.31 Aligned_cols=68 Identities=19% Similarity=0.383 Sum_probs=54.3
Q ss_pred EEEEcCchhhHHHHHHHHhcC-----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC-CCcCCCcE
Q 018574 275 AVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWARG-LDVQQAIL 343 (354)
Q Consensus 275 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idi~~~~~ 343 (354)
+||+++|++.|.++++.++.. ++.+..++|+.+...+...+ +.| .+|+|+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999988653 56788999998866665444 445 99999997 45555 88888888
Q ss_pred EEe
Q 018574 344 FFF 346 (354)
Q Consensus 344 Vi~ 346 (354)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 775
No 404
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.31 E-value=0.19 Score=45.06 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=51.0
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.+-..|.++.-..-.|.. .|.+=.|||||...++- .+.+...++.-++++.+-|+.|+.++.....++.
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~K-aa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHK-AAELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHH-HHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 445678777655555655 66888999999654443 3455666667789999999999999988887765
No 405
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.11 Score=49.01 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=17.7
Q ss_pred cEEEEcCCCCchhhHhHHHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
..++.||+|.|||.++...+...
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999997776554443
No 406
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.18 Score=43.50 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=28.4
Q ss_pred CChHHHHHhHhhhhc----CC---cEEEEcCCCCchhhHhHHHHhhcc
Q 018574 55 KPSAIQQRAVMPIIK----GR---DVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~---~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
.++|+|...+..+.+ ++ -.++.||.|.||+..+...+...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 456778777776553 33 579999999999966655544443
No 407
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.26 E-value=0.12 Score=45.51 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccc
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 96 (354)
.|++.+|.+|+|+|||..+ ..+...+.
T Consensus 168 kGQR~lIvgppGvGKTTLa-K~Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL-QNIANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHH-HHHHHHHH
Confidence 4899999999999999533 33444443
No 408
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.23 E-value=0.12 Score=51.31 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=65.5
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEc-cccccCCCcCCCcEEE
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQAILFF 345 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~~~~Vi 345 (354)
.++++.|+++|.=-|++-++.|+++ ++++..++--.+.++..++++...+|+++|+|+| ..++.++-+.++..+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 3467999999988887777777654 7778888888889999999999999999999999 6999999999999887
Q ss_pred e
Q 018574 346 F 346 (354)
Q Consensus 346 ~ 346 (354)
.
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 4
No 409
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.22 Score=46.32 Aligned_cols=142 Identities=19% Similarity=0.232 Sum_probs=77.8
Q ss_pred ccccCcccCCCCHHHHHHHHH---CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEE
Q 018574 30 EAITSFDAMGIKDDLLRGIYQ---YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (354)
-...+|++.|=-+++.+.+++ +....|..+..-- +...+.+++.+|+|.|||+.+ .......+. -++
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA------kalAne~~~-nFl 497 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA------KALANEAGM-NFL 497 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH------HHHhhhhcC-Cee
Confidence 344788998877788888875 3333444444333 233678999999999999533 222222222 234
Q ss_pred EcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
-++.-+|-.-|..+- ++..+...... ......+++|||+|.
T Consensus 498 svkgpEL~sk~vGeS--------------------------------------Er~ir~iF~kA-R~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 498 SVKGPELFSKYVGES--------------------------------------ERAIREVFRKA-RQVAPCIIFFDEIDA 538 (693)
T ss_pred eccCHHHHHHhcCch--------------------------------------HHHHHHHHHHH-hhcCCeEEehhhHHh
Confidence 445444444332211 11111111100 011337899999999
Q ss_pred hhccC-------cHHHHHHHHhhCC---CCCcEEEEEeeCchhH
Q 018574 187 MLSRG-------FKDQIYDVYRYLP---PDLQVVLISATLPHEI 220 (354)
Q Consensus 187 ~~~~~-------~~~~~~~i~~~~~---~~~~~i~lSaT~~~~~ 220 (354)
+...- ..+.+..++..+. ....++.+-||=.++.
T Consensus 539 i~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 539 LAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 85321 3455555555553 3456888899966543
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.20 E-value=0.16 Score=46.90 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
|.-+++.+|+|+|||...+..+...+.++ .+++|++ .-+-..|+...++.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~g---e~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANK---ERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEE-eeCCHHHHHHHHHHcC
Confidence 45789999999999987777777665544 3477766 4566777777777665
No 411
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.17 E-value=0.03 Score=48.13 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=32.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
|+-+.+.+|+|+|||..++..+...... +.+++|+..-.++-.+.+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~~~a 100 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDPVYA 100 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHHHHH
Confidence 4567899999999998777766655443 345888887666555433
No 412
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.16 E-value=0.062 Score=50.85 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCC
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~ 207 (354)
.+-.++|+||+...++......+...+..+.+++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~r 515 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGR 515 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCC
Confidence 4458899999999888776666666666544443
No 413
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.14 E-value=0.12 Score=50.60 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=29.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhh--hhcCCcEEEEcCCCCchhhHh
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~ii~~~tGsGKT~~~ 87 (354)
.+|++.+-.+.+.+.+.+.-. -+..++. .+.. +...+.+++.||+|+|||..+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~-~~~~~~~-~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVE-WPLKHPE-IFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cchhhcccHHHHHHHHHHHHH-hhhhCHH-HHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 466666666666666655311 1111111 1111 223467999999999999533
No 414
>PHA00729 NTP-binding motif containing protein
Probab=95.13 E-value=0.23 Score=40.32 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 018574 72 DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~ 90 (354)
++++.|++|+|||..+...
T Consensus 19 nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999655443
No 415
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.13 E-value=0.05 Score=46.99 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
+++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999995444
No 416
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.13 E-value=0.11 Score=46.36 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=31.9
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHh
Q 018574 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~ 87 (354)
.+..+|.+.+--+..++.+.+. .+..+..++..- +...+.+++.||+|+|||..+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3446677776555555555542 222222222221 234678999999999999643
No 417
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.11 E-value=0.14 Score=39.80 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=33.2
Q ss_pred EEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
++|.+++|||||..+...+.. .+.+++|+.-...+...+.++...+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHHHH
Confidence 578999999999765544432 23358888887777777777765544
No 418
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.10 E-value=0.2 Score=44.30 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=20.1
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
+-.|+.+.+.+|+|+|||..... +...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 34588999999999999964333 34443
No 419
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.18 Score=47.31 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=17.1
Q ss_pred cEEEEcCCCCchhhHhHHHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
..++.||.|.|||.++...+...
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 36899999999997666544433
No 420
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.07 E-value=0.13 Score=45.76 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=20.4
Q ss_pred hhhhcCCcEEEEcCCCCchhhHhHHH
Q 018574 65 MPIIKGRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 65 ~~~~~~~~~ii~~~tGsGKT~~~~~~ 90 (354)
+.+.++.+++..+|+|+|||..+...
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 44556889999999999999655543
No 421
>PRK06904 replicative DNA helicase; Validated
Probab=95.06 E-value=0.44 Score=43.78 Aligned_cols=122 Identities=17% Similarity=0.132 Sum_probs=59.1
Q ss_pred hHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCC-cch
Q 018574 63 AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGG-KSV 141 (354)
Q Consensus 63 ~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~~~ 141 (354)
...-+..|.-+++.|.||.|||..++-.+...+... +..++|++. ---..|+..++-......+ ...+..+ .-.
T Consensus 214 ~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSl-EMs~~ql~~Rlla~~s~v~--~~~i~~g~~l~ 288 (472)
T PRK06904 214 KTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSL-EMPAEQIMMRMLASLSRVD--QTKIRTGQNLD 288 (472)
T ss_pred HHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEec-cCCHHHHHHHHHHhhCCCC--HHHhccCCCCC
Confidence 334445567789999999999965544444333222 334666654 3344555555433322222 1112122 111
Q ss_pred HHhHH-------hhcCCCeEEEe-----CcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 142 GEDIR-------KLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 142 ~~~~~-------~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
.+++. .+.....+.|- |+..+....+........+++||||-.+.+..
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 22221 22222334442 44444433322111112478999999998753
No 422
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.39 Score=43.68 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHhHh-------hhhcC-----CcEEEEcCCCCchhhHhH
Q 018574 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVM-------PIIKG-----RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~Q~~~~~-------~~~~~-----~~~ii~~~tGsGKT~~~~ 88 (354)
+|++++-++.+...|+..-.+.-.++++ .+... ..+++.+|+|+|||..++
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA 556 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA 556 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH
Confidence 6888888888888876544333333332 22221 358999999999995443
No 423
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.05 E-value=0.21 Score=49.40 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=22.6
Q ss_pred CChHHHHHhHhhhhc------CCcEEEEcCCCCchhhHh
Q 018574 55 KPSAIQQRAVMPIIK------GRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~------~~~~ii~~~tGsGKT~~~ 87 (354)
.+--.|.+.+..+.+ ..+.++.||+|+|||..+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 343446665665543 358999999999999544
No 424
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.05 E-value=0.14 Score=45.21 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=14.9
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 018574 72 DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~ 90 (354)
..++.||+|+|||.++...
T Consensus 38 ~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999655443
No 425
>PHA00012 I assembly protein
Probab=95.04 E-value=0.5 Score=40.45 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=21.7
Q ss_pred EEEEcCCCCchhhHhHHHHhhccccC
Q 018574 73 VIAQAQSGTGKTSMIALTVCQTVDTS 98 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~~~~~ 98 (354)
-++.|.+|+|||..++.-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998888777777665
No 426
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.031 Score=49.49 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+..++.+|+|+||| ++..+.+...+....-+.|
T Consensus 187 rglLLfGPpgtGKt------mL~~aiAsE~~atff~iSa 219 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKT------MLAKAIATESGATFFNISA 219 (428)
T ss_pred chhheecCCCCchH------HHHHHHHhhhcceEeeccH
Confidence 56899999999999 4444444333343444444
No 427
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.058 Score=52.05 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=57.5
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-CCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
.+++-|.+++... ....+|.+..|||||.+...-+.+.+... -....++.++=|+..+.++.+++.+...
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998775 67899999999999998888877777653 2334689999999999999999988774
No 428
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.16 Score=48.58 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=72.9
Q ss_pred hHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcC-CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Q 018574 259 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARG 335 (354)
Q Consensus 259 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 335 (354)
|.+.+..+++.. .++.+||.++.+....++.+.|+.+ |.++.++|+++++.+|...-.+..+|+.+|+|+|..+- =
T Consensus 230 KTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F 308 (730)
T COG1198 230 KTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-F 308 (730)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-c
Confidence 666666666533 3468999999999999999999866 88999999999999999999999999999999996322 2
Q ss_pred CCcCCCcEEEecCCCC
Q 018574 336 LDVQQAILFFFLFLFC 351 (354)
Q Consensus 336 idi~~~~~Vi~~~~p~ 351 (354)
.-++++..||.-.--.
T Consensus 309 ~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 309 LPFKNLGLIIVDEEHD 324 (730)
T ss_pred CchhhccEEEEecccc
Confidence 4466788777654333
No 429
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.97 E-value=0.13 Score=44.76 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=29.6
Q ss_pred HcCCCCCCCCCcceeecccCcccccCcccCCCCHHHHHHHHHCCCC
Q 018574 9 RRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFE 54 (354)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 54 (354)
+..+..........................|+++..++.|++.||.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~ 53 (344)
T PLN03187 8 DEGAQLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIY 53 (344)
T ss_pred hhhhhhhhhhhhhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCC
Confidence 3333333344444334444456666777788999999999999985
No 430
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.96 E-value=0.11 Score=50.65 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..++.+++.||+|+|||..
T Consensus 210 ~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCceEEEECCCCCChHHH
Confidence 3467899999999999954
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.94 E-value=0.61 Score=40.40 Aligned_cols=55 Identities=18% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCccEEEEecchhhhcc-CcHHHHHHHHhhC------CCCCcEEEEEeeCchhHHHHHHhcc
Q 018574 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYL------PPDLQVVLISATLPHEILEMTTKFM 228 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~-~~~~~~~~i~~~~------~~~~~~i~lSaT~~~~~~~~~~~~~ 228 (354)
.++++||+|=+-++... .....+..+.+.. .+...++.++||...+.......+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 46789999988765322 2334555554432 2344578999998665555444443
No 432
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.92 E-value=0.033 Score=43.23 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=20.7
Q ss_pred CCccEEEEecchhhh--ccCcHHHHHHHHhhCCCCCcEE
Q 018574 174 RAIKLLVLDESDEML--SRGFKDQIYDVYRYLPPDLQVV 210 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~--~~~~~~~~~~i~~~~~~~~~~i 210 (354)
..-+++|+||.=.|- ..+|.+.+..+++ ++.+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi 129 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVI 129 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEE
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEE
Confidence 356799999998874 4567888877777 444444
No 433
>PRK09354 recA recombinase A; Provisional
Probab=94.90 E-value=0.054 Score=47.07 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (354)
|+-+.|.+|+|+|||...+..+...... +..++|+-.-.++-..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPV 103 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHHH
Confidence 4567899999999998888777666543 3458888776665553
No 434
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.84 E-value=0.14 Score=45.82 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhhHh
Q 018574 70 GRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~ 87 (354)
.+.+++.||+|+|||..+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 467999999999999543
No 435
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.11 Score=48.72 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCc
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~ 208 (354)
++..++|+|||-..++......+...+..+..+.-
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rT 655 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRT 655 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCe
Confidence 57789999999999888777888888877666643
No 436
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.69 E-value=0.62 Score=42.31 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=34.1
Q ss_pred HHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 61 ~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
-+.+.-+..|.-+++.|+||.|||...+-.+....... +.+++|+.. -.-..|+..++
T Consensus 185 D~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fSl-Em~~~~l~~Rl 242 (421)
T TIGR03600 185 DRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFSL-EMSAEQLGERL 242 (421)
T ss_pred HHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEEC-CCCHHHHHHHH
Confidence 34444455577889999999999976665554443222 334777762 22334444443
No 437
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.64 E-value=0.29 Score=41.15 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=69.8
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC---HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGE 143 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (354)
+..|.-+++.|.||.|||..++-.+...+... +..++|++.- .++...+...... .+ ...+..+.-...
T Consensus 16 ~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~~~~l~~R~la~~s~----v~--~~~i~~g~l~~~ 87 (259)
T PF03796_consen 16 LRPGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMSEEELAARLLARLSG----VP--YNKIRSGDLSDE 87 (259)
T ss_dssp B-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS-HHHHHHHHHHHHHT----ST--HHHHHCCGCHHH
T ss_pred CCcCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhhc----ch--hhhhhccccCHH
Confidence 34466789999999999977777766666543 2458888753 3333333332211 11 111111111111
Q ss_pred hH-------HhhcCCCeEEEeC----cHHHHHHHhcCCccCCCccEEEEecchhhhcc----CcHHH-------HHHHHh
Q 018574 144 DI-------RKLEHGVHVVSGT----PGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQ-------IYDVYR 201 (354)
Q Consensus 144 ~~-------~~~~~~~~iiv~T----~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~----~~~~~-------~~~i~~ 201 (354)
+. ..+....-++..+ ++.+.............+++||||=.|.+... .-... ++.+..
T Consensus 88 e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 88 EFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 1222222233333 33444443322222257789999999998653 22233 333333
Q ss_pred hCCCCCcEEEEEeeC
Q 018574 202 YLPPDLQVVLISATL 216 (354)
Q Consensus 202 ~~~~~~~~i~lSaT~ 216 (354)
. .+..++.+|..-
T Consensus 168 ~--~~i~vi~~sQln 180 (259)
T PF03796_consen 168 E--LNIPVIALSQLN 180 (259)
T ss_dssp H--HTSEEEEEEEBS
T ss_pred H--cCCeEEEccccC
Confidence 3 256677666653
No 438
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.083 Score=39.93 Aligned_cols=117 Identities=15% Similarity=0.259 Sum_probs=56.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh--
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-- 148 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 148 (354)
-.+++.+++|+|||++..- +...+.....+. .=+++|- .+.-+...++++..+..|....-.....
T Consensus 6 mki~ITG~PGvGKtTl~~k-i~e~L~~~g~kv-gGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK-IAEKLREKGYKV-GGFITPE----------VREGGKRIGFKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred eEEEEeCCCCccHHHHHHH-HHHHHHhcCcee-eeEEeee----------eecCCeEeeeEEEEccCCceEEEEEcCCCC
Confidence 3689999999999965443 344443332222 2333442 2233445567776665443211000000
Q ss_pred -cCC-CeEEEeCcHHH-HHHHhcCCccCCCccEEEEecchhhh--ccCcHHHHHHHHhh
Q 018574 149 -EHG-VHVVSGTPGRV-CDMIKRKTLRTRAIKLLVLDESDEML--SRGFKDQIYDVYRY 202 (354)
Q Consensus 149 -~~~-~~iiv~T~~~l-~~~~~~~~~~~~~~~~vvvDE~h~~~--~~~~~~~~~~i~~~ 202 (354)
.-+ +.|.+-..+.+ ...+++-. ..-+++|+||.--|- ...|...+..+++.
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~---~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRAL---EEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHHHh---hcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 000 11211111111 11111100 124899999998763 45677777777653
No 439
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.63 E-value=0.099 Score=43.98 Aligned_cols=45 Identities=11% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHCCCCCChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
.+.+.|+ .+.|.+.+..++. +..+++.++||||||+... .++..+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~-all~~i 104 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLY-SALSEL 104 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHH-HHHhhh
Confidence 4555654 5556666665554 3468999999999996543 344444
No 440
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.61 E-value=0.32 Score=40.43 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=20.3
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
+-.|+.+++.+|.|+|||.. +-.+...+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 45689999999999999953 33344443
No 441
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.59 E-value=0.054 Score=44.48 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=24.1
Q ss_pred cEEEEecchhhh-c----cCcHHHHHHHHhhCCC-CCcEEEEEeeC
Q 018574 177 KLLVLDESDEML-S----RGFKDQIYDVYRYLPP-DLQVVLISATL 216 (354)
Q Consensus 177 ~~vvvDE~h~~~-~----~~~~~~~~~i~~~~~~-~~~~i~lSaT~ 216 (354)
-+||+||+|.+. . ..+...+..++..... ....++++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999998 2 2355566666666322 23345566664
No 442
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.59 E-value=0.36 Score=37.56 Aligned_cols=143 Identities=16% Similarity=0.230 Sum_probs=74.0
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHH-HHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
-++|.-..|-|||++++-.++..+..+. ++.|+==.+.-...- ...+..+. ..+....+..+-..+.....
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~---rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~~~~--- 101 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGL---RVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQDRE--- 101 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCC---EEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCcCcH---
Confidence 4788888999999999988888876654 355543222110100 11122221 11222222221111110000
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc--HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHh
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~ 226 (354)
.++ ........... ..+....+++||+||.--.+..++ .+.+..+++..|.+.-+|+..-..++.+.+....
T Consensus 102 -~d~--~aa~~~w~~a~-~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 102 -ADI--AAAKAGWEHAK-EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred -HHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 011 11111111111 123334789999999998876653 5677777887777777666555567766665543
No 443
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.49 Score=43.25 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=17.8
Q ss_pred cEEEEcCCCCchhhHhHHHHhhcc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
..++.||+|+|||.++...+-...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999976665544433
No 444
>PRK10436 hypothetical protein; Provisional
Probab=94.51 E-value=0.087 Score=47.94 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHCCCCCChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhccc
Q 018574 48 IYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (354)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~ 96 (354)
+.+.|+ .+.|.+.+..+.. +.-+++.+|||||||+.... ++..+.
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a-~l~~~~ 243 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS-ALQTLN 243 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHH-HHHhhC
Confidence 444554 5556666665543 45689999999999975543 444443
No 445
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=94.46 E-value=0.39 Score=43.43 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=52.9
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh---cC-CCeEEEeCcHHHHHHHhcCCccCCCc
Q 018574 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---EH-GVHVVSGTPGRVCDMIKRKTLRTRAI 176 (354)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~iiv~T~~~l~~~~~~~~~~~~~~ 176 (354)
.+.++|.++++.=++.+++.|.+.+ +++.+++|+...++....+ .. ..+|+|+|.- -...++..++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g----~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv------AgRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG----YKVTTLHGGKSQEQRENALADFREGTGDILVATDV------AGRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc----ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc------cccCCCCCcc
Confidence 4569999999999998888887776 9999999999887665543 33 5899999952 2235566666
Q ss_pred cEEE
Q 018574 177 KLLV 180 (354)
Q Consensus 177 ~~vv 180 (354)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 7665
No 446
>PRK08506 replicative DNA helicase; Provisional
Probab=94.44 E-value=0.55 Score=43.22 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=33.2
Q ss_pred hhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 65 ~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
.-+..|.-+++.|.||.|||..++-.+...+.. +.++++++. -.-..|+..++-
T Consensus 187 ~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSl-EMs~~ql~~Rll 240 (472)
T PRK08506 187 KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSL-EMPAEQLMLRML 240 (472)
T ss_pred CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeC-cCCHHHHHHHHH
Confidence 334456778999999999997666665554422 334666653 234455555443
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.43 E-value=0.11 Score=41.22 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=24.2
Q ss_pred ChHHHHHhHhhhh-cCCcEEEEcCCCCchhhHh
Q 018574 56 PSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 56 ~~~~Q~~~~~~~~-~~~~~ii~~~tGsGKT~~~ 87 (354)
+.+.|.+.+.... .+..+++.+|||+|||+..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4566766666544 4789999999999999644
No 448
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.41 E-value=0.082 Score=41.15 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=31.2
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.+++.+++|||||..+...+.. . +.+++++......-.++.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~-~-----~~~~~~iat~~~~~~e~~~ri~~h~ 50 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ-S-----GLQVLYIATAQPFDDEMAARIAHHR 50 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH-c-----CCCcEeCcCCCCChHHHHHHHHHHH
Confidence 5799999999999655544332 1 2236777766666666666665544
No 449
>PRK13764 ATPase; Provisional
Probab=94.40 E-value=0.085 Score=49.41 Aligned_cols=27 Identities=11% Similarity=0.366 Sum_probs=20.1
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccc
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~ 96 (354)
.++++++.+|||||||+.. ..++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 3678999999999999644 44555554
No 450
>PHA00350 putative assembly protein
Probab=94.38 E-value=0.33 Score=43.07 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=18.6
Q ss_pred EEEEcCCCCchhhHhHH-HHhhccccC
Q 018574 73 VIAQAQSGTGKTSMIAL-TVCQTVDTS 98 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~-~~~~~~~~~ 98 (354)
.++.|.+|||||..++. .++..+..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999987765 344454444
No 451
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.37 E-value=0.76 Score=45.78 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
..+.++.||+|+|||..+-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3588999999999996544
No 452
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.09 Score=51.76 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=82.5
Q ss_pred cCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEE
Q 018574 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (354)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (354)
........|++.|-...++..++++-+..+..-+...=-.+..-+.++..+|+|+|||+++-..+.+.- .+.+ ++.+
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s-~~~~--kisf 332 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACS-RGNR--KISF 332 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhc-cccc--ccch
Confidence 445667889999988888888888644332211111111233467899999999999964433322221 1111 1111
Q ss_pred EcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
-.- .-++.+ .--|+..++=++++.. .........+.+||++-
T Consensus 333 fmr------kgaD~l-------------------------------skwvgEaERqlrllFe-eA~k~qPSIIffdeIdG 374 (1080)
T KOG0732|consen 333 FMR------KGADCL-------------------------------SKWVGEAERQLRLLFE-EAQKTQPSIIFFDEIDG 374 (1080)
T ss_pred hhh------cCchhh-------------------------------ccccCcHHHHHHHHHH-HHhccCceEEecccccc
Confidence 000 000000 0112333333333322 11223568899999995
Q ss_pred hhcc----------CcHHHHHHHHhhCCCCCcEEEEEeeCchhHH
Q 018574 187 MLSR----------GFKDQIYDVYRYLPPDLQVVLISATLPHEIL 221 (354)
Q Consensus 187 ~~~~----------~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~ 221 (354)
+.-. +....+..++.-+....|+++++||..++..
T Consensus 375 lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 375 LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 4211 1334555666666778899999999765533
No 453
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.33 E-value=0.32 Score=44.36 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=35.0
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
|.-+++.+++|+|||...+..+...... +.+++|+..- +-..|+..+..+++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHcC
Confidence 5678999999999997777665544433 2358888753 44566666655543
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.31 E-value=0.12 Score=47.60 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHCCCCCChHHHHHhHhhhhcC-C-cEEEEcCCCCchhhHhHHHHhhccc
Q 018574 47 GIYQYGFEKPSAIQQRAVMPIIKG-R-DVIAQAQSGTGKTSMIALTVCQTVD 96 (354)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~-~-~~ii~~~tGsGKT~~~~~~~~~~~~ 96 (354)
.+.+.|+ .+.|.+.+..+... + -+++.||||||||+.... ++..+.
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a-~L~~l~ 267 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYA-ALSRLN 267 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH-HHhccC
Confidence 3445554 56677777666553 3 468999999999965543 344443
No 455
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.52 Score=43.44 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=14.7
Q ss_pred EEEEcCCCCchhhHhHHHH
Q 018574 73 VIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~ 91 (354)
.++.||+|+|||.++...+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999996555443
No 456
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.30 E-value=0.069 Score=46.46 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=27.4
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
+..++++++.|+||||||+. +-.++..+... .+++.+=.+.++
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~---~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPAI---ERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCCC---CeEEEecCCCcc
Confidence 34578999999999999954 34455555433 345554444443
No 457
>PRK08840 replicative DNA helicase; Provisional
Probab=94.30 E-value=0.76 Score=42.11 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 60 QQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 60 Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
--+...-+..|.-+++.|.||.|||..++-.+....... +..++|+..- --..|+..++-
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlE-Ms~~ql~~Rll 266 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLE-MPAEQLMMRML 266 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEecc-CCHHHHHHHHH
Confidence 334444555677889999999999965544444333222 3346666532 33445555443
No 458
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.29 E-value=0.12 Score=45.18 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
.++++.||+|+|||..+..
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 5799999999999965543
No 459
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.15 E-value=0.033 Score=43.65 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=27.9
Q ss_pred hcCCCeEEEeCcHHHHHHHhcCCc--cCCCccEEEEecchhhhcc
Q 018574 148 LEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 148 ~~~~~~iiv~T~~~l~~~~~~~~~--~~~~~~~vvvDE~h~~~~~ 190 (354)
....++|+|+++..|..-.....+ ...+-.+|||||||.+.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 344589999999888764333222 2234578999999998543
No 460
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.07 E-value=0.7 Score=35.95 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHH-HHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK-VILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
.-+.|....|-|||++++-.++..+..+. +++++==.+.-...-.. .++... ++.......+...... ...
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~---rV~iiQFlKg~~~~GE~~~l~~~~---~v~~~~~g~~~~~~~~--~~~ 93 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGT---PVLIVQFLKGGIQQGPDRPIQLGQ---NLDWVRCDLPRCLDTP--HLD 93 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCC---EEEEEEEecCCCcchHHHHHHhCC---CcEEEECCCCCeeeCC--CcC
Confidence 35677888999999999988888876654 46666533322111111 122211 2333322111000000 000
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc--HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHH
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~ 224 (354)
.-+. ........... ..+....+++||+||+-...+.++ .+.+..+++..|...-+|+..-.+|+++.+..
T Consensus 94 -~~~~--~~~~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 94 -ESEK--KALQELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred -HHHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 0000 00111111111 122345789999999998877764 56777788887777666665556666665544
No 461
>PHA02535 P terminase ATPase subunit; Provisional
Probab=94.06 E-value=0.45 Score=44.22 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 39 ~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
.+++.....+...-...+.+||...+..-...+.-++.-.--.|||+.+..-++..+... +...+++.|+++.+....
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~--G~nqiflSas~~QA~~f~ 199 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT--GRNQIFLSASKAQAHVFK 199 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc--CCceEEECCCHHHHHHHH
Confidence 378788888887666789999999886532234445555666899988776555544332 345799999999999888
Q ss_pred HHHHHhcc
Q 018574 119 KVILAIGD 126 (354)
Q Consensus 119 ~~~~~~~~ 126 (354)
+.+..+..
T Consensus 200 ~yi~~~a~ 207 (581)
T PHA02535 200 QYIIAFAR 207 (581)
T ss_pred HHHHHHHH
Confidence 88777743
No 462
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.98 E-value=0.057 Score=44.83 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
.++++.+|+|.|||+.+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4799999999999964443
No 463
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.97 E-value=0.087 Score=49.95 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=27.5
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+-+++++||.-.-++......+.+.+....++.-++.+|
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiit 525 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4568899999998888777776766666654454444443
No 464
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.92 E-value=0.49 Score=46.99 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
..+.++.||+|+|||...-.
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred cCceEEECCCCCCHHHHHHH
Confidence 35889999999999965543
No 465
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.52 Score=40.78 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEe
Q 018574 161 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
.+...+....+. ....++|+|++|.|.... .+.+.+.+..-+ +..++++|.
T Consensus 111 ~i~~~l~~~p~~-~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPLE-APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHccCccc-CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 344444433332 467999999999984432 344555555544 554444443
No 466
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.45 Score=45.26 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
....++|+||+|.+.... .+.+...+...+... ++++.+|
T Consensus 120 ~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred CCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 467899999999984432 334445555444443 3444444
No 467
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=0.49 Score=45.04 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=29.0
Q ss_pred ccCcccCCCCHHHHHHHHH-CCCCCChHHHHHhHhh-hhcCCcEEEEcCCCCchhhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~-~~~~~~~ii~~~tGsGKT~~ 86 (354)
..+|++.|=-+++...+.+ .+. |-.| .+.+.. +..+..+++.+|+|+|||+.
T Consensus 668 nV~WdDVGGLeevK~eIldTIql--PL~h-peLfssglrkRSGILLYGPPGTGKTLl 721 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQL--PLKH-PELFSSGLRKRSGILLYGPPGTGKTLL 721 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcC--cccC-hhhhhccccccceeEEECCCCCchHHH
Confidence 3567777644455444433 222 1111 123322 33356799999999999953
No 468
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.24 Score=45.04 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=28.8
Q ss_pred CccEEEEecchhhhccC-------cHHHHHHHHhhC---CCCCcEEEEEeeCchh
Q 018574 175 AIKLLVLDESDEMLSRG-------FKDQIYDVYRYL---PPDLQVVLISATLPHE 219 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~-------~~~~~~~i~~~~---~~~~~~i~lSaT~~~~ 219 (354)
...+|++||.|.+-..- ....++.++..+ .++--+|++.||--++
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 55789999999874321 234455554444 3456799999996444
No 469
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.85 E-value=0.09 Score=47.07 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=36.0
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
++++.||||+|||..+++|-+... +..++|+=|.-++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHcC
Confidence 578999999999998887755432 1347787888888887776665543
No 470
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.83 E-value=0.85 Score=39.85 Aligned_cols=39 Identities=10% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
...+++||||+|.+.... .+.+.+.++.-+....+++.|
T Consensus 109 ~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 109 SNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred cCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEe
Confidence 456899999999984432 344445555444444445433
No 471
>CHL00176 ftsH cell division protein; Validated
Probab=93.83 E-value=0.22 Score=47.43 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhhHh
Q 018574 70 GRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~ 87 (354)
.+++++.||+|+|||..+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999543
No 472
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.83 E-value=0.14 Score=46.85 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCC-CCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~lSaT 215 (354)
.++.+.|+||+|.+.. ...+.+++.+.. ...++++=||
T Consensus 118 ~ryKVyiIDEvHMLS~----~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 118 GRYKVYIIDEVHMLSK----QAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred ccceEEEEecHHhhhH----HHHHHHhcccccCccCeEEEEec
Confidence 5789999999999843 445555565543 3346666666
No 473
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.82 E-value=0.63 Score=46.15 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
.++.++.||+|.|||..+-..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~l 220 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGL 220 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHH
Confidence 458999999999999655433
No 474
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.82 E-value=0.43 Score=39.17 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=25.2
Q ss_pred hcCC-cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHH
Q 018574 68 IKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (354)
Q Consensus 68 ~~~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (354)
..++ -+.+.++-|||||...= ++.+.+..+ ..++++.|...+..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d---~~~~v~i~~~~~s~ 92 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR-ALLASLNED---QVAVVVIDKPTLSD 92 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH-HHHHhcCCC---ceEEEEecCcchhH
Confidence 3455 67999999999996544 344443322 22444454443333
No 475
>PRK07004 replicative DNA helicase; Provisional
Probab=93.75 E-value=0.43 Score=43.74 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=31.9
Q ss_pred HhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 62 RAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 62 ~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
+...-+..|.-+++.|.||.|||..++-.+....... +..+++++. ---..|+..++
T Consensus 205 ~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--~~~v~~fSl-EM~~~ql~~R~ 261 (460)
T PRK07004 205 RMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY--GLPVAVFSM-EMPGTQLAMRM 261 (460)
T ss_pred ccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc--CCeEEEEeC-CCCHHHHHHHH
Confidence 3333444567789999999999965554444333222 234666542 22334444443
No 476
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.74 E-value=0.47 Score=39.33 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=25.4
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccc---------cCCCceeEEEEc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVD---------TSSREVQALILS 108 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~---------~~~~~~~~lil~ 108 (354)
-.++.+|+|+|||...+..++.... ....+.+++|+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 4689999999999877777665331 112344688877
No 477
>PRK14701 reverse gyrase; Provisional
Probab=93.71 E-value=0.33 Score=51.23 Aligned_cols=60 Identities=20% Similarity=0.347 Sum_probs=53.0
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC------CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 330 (354)
.+.+++|.+++++.+.++++.|+.. +..+..+||+++..++.+.++.+.+|+.+|||+|+
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TP 186 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTA 186 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECC
Confidence 3468999999999999999999863 46778899999999998889999999999999997
No 478
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.71 E-value=0.15 Score=47.98 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=29.6
Q ss_pred HHHHCCCCCChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
.+.+.|+ .+.|.+.+..+.. +..+++.||||||||+... .++..+
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~-a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLY-TALNIL 340 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHH-HHHHhh
Confidence 3555655 5566666666554 3467899999999997653 344444
No 479
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.70 E-value=0.61 Score=42.10 Aligned_cols=84 Identities=13% Similarity=0.216 Sum_probs=62.3
Q ss_pred hHHHHHHHHhhC---CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-
Q 018574 259 KFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD- 330 (354)
Q Consensus 259 ~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~- 330 (354)
.+.+|..++-.. ..-++||.|+|++.+.+++...++. .+.+...-|+++-..++.+++ ...+|+|+|+
T Consensus 236 ~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPG 311 (691)
T KOG0338|consen 236 ALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPG 311 (691)
T ss_pred HHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecch
Confidence 455666655432 2347999999999999998887764 677888889999888777775 6889999997
Q ss_pred -c-----cccCCCcCCCcEEEe
Q 018574 331 -V-----WARGLDVQQAILFFF 346 (354)
Q Consensus 331 -~-----~~~Gidi~~~~~Vi~ 346 (354)
. -+.++|+.++.++|.
T Consensus 312 RlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 312 RLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred hHHHHhccCCCccccceeEEEe
Confidence 2 345777777766654
No 480
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.68 E-value=0.1 Score=44.15 Aligned_cols=43 Identities=14% Similarity=0.353 Sum_probs=28.3
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
..+.++++.|+||||||+.. ..++..+... ..+++.+=...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 44789999999999999654 4455555444 2346666655444
No 481
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.65 E-value=0.35 Score=46.35 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=15.7
Q ss_pred EEEEcCCCCchhhHhHHHHh
Q 018574 73 VIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~ 92 (354)
.++.||.|.|||.++-..+-
T Consensus 43 YLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 58999999999976655443
No 482
>PRK09087 hypothetical protein; Validated
Probab=93.65 E-value=0.26 Score=40.36 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=24.3
Q ss_pred cEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCch
Q 018574 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (354)
Q Consensus 177 ~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~ 218 (354)
++|++|++|.+.. ....+..+++.+......+++|++.++
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p 128 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWP 128 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCCh
Confidence 4799999997632 245566666655553344556665433
No 483
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.64 E-value=0.11 Score=47.99 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=38.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.++++.||||||||..+++|.+-.. . + .++|.=|.-++...+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~--~--~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY--P--G-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc--c--C-CEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999988865321 1 1 47777788888888887777665
No 484
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.72 Score=41.02 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 018574 72 DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~ 90 (354)
..++.||+|+|||..+...
T Consensus 41 ~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999655543
No 485
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.60 E-value=0.8 Score=36.69 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccc-----c-ccCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-----W-ARGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidi~~ 340 (354)
...+++|.+++...+.+.+..++.. ++.+..++|+.+..+.....+ +..+|+|+|.. + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4458999999999999888777654 677888888877655443332 67889999951 2 22356677
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
++++|.
T Consensus 144 l~~lIv 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
Confidence 777664
No 486
>PRK05748 replicative DNA helicase; Provisional
Probab=93.54 E-value=0.87 Score=41.73 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=32.9
Q ss_pred hHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 63 AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 63 ~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
...-+..|.-++|.|.||.|||...+-.+...+... +..+++++. -.-..|+..++
T Consensus 196 ~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSl-Ems~~~l~~R~ 251 (448)
T PRK05748 196 MTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSL-EMGAESLVMRM 251 (448)
T ss_pred hcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeC-CCCHHHHHHHH
Confidence 333344567789999999999966665554433222 234666653 33344555544
No 487
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.059 Score=45.45 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=31.7
Q ss_pred cCcccCCCCHHHHHHHHHC--CCCC--------ChHHHHHhHhh------hhcCCcEEEEcCCCCchhhHh
Q 018574 33 TSFDAMGIKDDLLRGIYQY--GFEK--------PSAIQQRAVMP------IIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~--~~~~--------~~~~Q~~~~~~------~~~~~~~ii~~~tGsGKT~~~ 87 (354)
.+..++|-+.++...|.++ |... .+.|-.++-.. =++..++++.+|||||||+.+
T Consensus 44 ~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 44 KELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred hhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHH
Confidence 4555677777777777664 2211 12222222111 123468999999999999643
No 488
>PRK08006 replicative DNA helicase; Provisional
Probab=93.50 E-value=1.1 Score=41.27 Aligned_cols=120 Identities=18% Similarity=0.115 Sum_probs=57.6
Q ss_pred HhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHH
Q 018574 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE 143 (354)
Q Consensus 64 ~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (354)
..-+..|.-+++.|.||.|||..++-.+....... +..++|+.. ---..|+..++-..... +....+..+.-..+
T Consensus 218 ~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSl-EM~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~ 292 (471)
T PRK08006 218 TAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSL-EMPGEQIMMRMLASLSR--VDQTRIRTGQLDDE 292 (471)
T ss_pred hcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEec-cCCHHHHHHHHHHHhcC--CCHHHhhcCCCCHH
Confidence 34445567789999999999965554444433222 334666653 23344555444332222 22212222221222
Q ss_pred hHH-------hhcCCCeEEEe-----CcHHHHHHHhcCCccCCCccEEEEecchhhh
Q 018574 144 DIR-------KLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (354)
Q Consensus 144 ~~~-------~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~ 188 (354)
++. .+.....+.|- |+..+....+........+++||||=.|.+.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 221 12122334332 3444433332211111257899999999875
No 489
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.46 E-value=0.14 Score=43.11 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=38.1
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
-.|+.+++.+++|+|||...+..+...+..+. ++++++- .+...++.+.+..++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge---~vlyvs~-~e~~~~l~~~~~~~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGE---PVLYVST-EESPEELLENARSFG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC---cEEEEEe-cCCHHHHHHHHHHcC
Confidence 34678999999999999888888777776643 3777664 344555555555544
No 490
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=93.43 E-value=0.11 Score=49.44 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=27.3
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
++.+++++||.-.-++....+.+.+.+....++.-++.+|--
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~ 534 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHR 534 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 456889999998887776666666655555444444444433
No 491
>PF12846 AAA_10: AAA-like domain
Probab=93.41 E-value=0.1 Score=44.89 Aligned_cols=41 Identities=17% Similarity=0.386 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
++++++.|+||+|||......+.+.+..+ ..++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCCchH
Confidence 35789999999999977775555554444 346666554333
No 492
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.38 E-value=1.9 Score=38.06 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.+.+-+.|+.|.|||...-+. .+.+.. +.+.+ ++-.+...++.+.+.++.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~lp~-~~k~R----~HFh~Fm~~vh~~l~~~~ 111 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSLPI-KRKRR----VHFHEFMLDVHSRLHQLR 111 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhCCc-ccccc----ccccHHHHHHHHHHHHHh
Confidence 578999999999999533322 222222 11122 344566666666665543
No 493
>PRK13695 putative NTPase; Provisional
Probab=93.38 E-value=1.5 Score=34.14 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.+++|+|||+....
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999975554
No 494
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.33 E-value=0.071 Score=50.73 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=28.0
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
++-+++++||+=..+|......+...+..+.++.-++.+|=-
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHr 543 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ 543 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 456889999999888876666666666655445444444433
No 495
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.32 E-value=0.19 Score=51.70 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=46.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.++++|.|+.|||||.+...-++..+..+.....+++++-|+.-+..+.+++....
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 56899999999999998888888777665555689999999999988888776544
No 496
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.26 E-value=0.21 Score=39.76 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=38.2
Q ss_pred hHhhhh-cCCcEEEEcCCCCchhhHhHHHHhhccccC-------CCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 63 AVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 63 ~~~~~~-~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
++..++ .|.-+++.||+|+|||...+..+...+... ..+.+++|+..-.. ..++.+++.....
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 333344 577799999999999977766666555311 13456888776544 5566677766553
No 497
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.18 E-value=0.18 Score=39.57 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCC-CCcEEEEEe
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISA 214 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~lSa 214 (354)
.+.+++++||...-++......+...+..+.. +.++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45689999999988877666666666555433 355555443
No 498
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.18 E-value=0.15 Score=52.28 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=46.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccC--CCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
.+++++|.|..|||||.+....++..+... -.-..+|+++.|++-+..+..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 367899999999999999998888888774 34457999999998888888776543
No 499
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.17 E-value=0.15 Score=48.40 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
++-+++++||.-..++......+...+..+..++-++.+|--
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr 538 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 456889999999888877666666666665455555555533
No 500
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.16 E-value=0.11 Score=43.67 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=21.6
Q ss_pred HhHhhhhcCCcEEEEcCCCCchhhHhHHH
Q 018574 62 RAVMPIIKGRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 62 ~~~~~~~~~~~~ii~~~tGsGKT~~~~~~ 90 (354)
++...+..++++++.||+|+|||..+...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 33444556899999999999999755543
Done!