Query 018574
Match_columns 354
No_of_seqs 168 out of 1685
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 17:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.8E-55 9.7E-60 394.6 39.7 330 22-353 45-381 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 5.5E-55 1.9E-59 391.8 35.6 335 19-353 23-357 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1.1E-52 3.6E-57 377.8 36.7 330 23-353 5-357 (417)
4 3eiq_A Eukaryotic initiation f 100.0 8.3E-53 2.8E-57 378.2 34.3 326 28-353 35-361 (414)
5 1s2m_A Putative ATP-dependent 100.0 2.4E-51 8E-56 367.0 36.7 322 30-353 18-339 (400)
6 1xti_A Probable ATP-dependent 100.0 1E-50 3.5E-55 361.9 37.0 320 33-353 8-331 (391)
7 3pey_A ATP-dependent RNA helic 100.0 1.4E-50 4.9E-55 361.5 36.2 316 32-351 4-322 (395)
8 3fht_A ATP-dependent RNA helic 100.0 1.3E-50 4.6E-55 363.6 35.6 323 27-352 19-346 (412)
9 1fuu_A Yeast initiation factor 100.0 6.6E-52 2.2E-56 370.0 22.1 324 29-353 17-340 (394)
10 1hv8_A Putative ATP-dependent 100.0 9.4E-49 3.2E-53 346.3 35.7 314 32-353 5-319 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 4E-50 1.4E-54 366.7 22.8 320 30-352 89-413 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 8.1E-48 2.8E-52 358.5 31.0 324 30-353 14-372 (579)
13 2z0m_A 337AA long hypothetical 100.0 2.1E-46 7.3E-51 327.4 34.0 297 40-353 1-297 (337)
14 3i5x_A ATP-dependent RNA helic 100.0 8.6E-47 2.9E-51 351.5 30.7 314 40-353 79-423 (563)
15 3fho_A ATP-dependent RNA helic 100.0 4.9E-48 1.7E-52 353.9 20.0 319 29-351 115-436 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 3.3E-45 1.1E-49 338.1 30.1 314 29-353 15-348 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.1E-44 3.6E-49 331.7 28.5 304 33-353 2-317 (523)
18 3oiy_A Reverse gyrase helicase 100.0 2.1E-43 7.3E-48 316.6 21.2 289 43-353 9-335 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 3.2E-42 1.1E-46 320.8 20.9 301 53-353 5-484 (556)
20 2ykg_A Probable ATP-dependent 100.0 2.7E-42 9.3E-47 329.0 20.7 309 45-353 3-492 (696)
21 3tbk_A RIG-I helicase domain; 100.0 5.8E-41 2E-45 312.3 24.3 298 55-354 4-484 (555)
22 2va8_A SSO2462, SKI2-type heli 100.0 2.8E-40 9.6E-45 315.2 29.1 305 32-348 7-368 (715)
23 2zj8_A DNA helicase, putative 100.0 4.5E-41 1.5E-45 320.6 23.0 299 34-346 2-344 (720)
24 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-40 3.8E-45 320.8 24.6 304 50-353 243-725 (797)
25 4ddu_A Reverse gyrase; topoiso 100.0 7.2E-41 2.5E-45 327.5 22.9 285 45-351 68-388 (1104)
26 3l9o_A ATP-dependent RNA helic 100.0 1.4E-40 4.8E-45 325.5 24.0 306 32-353 161-561 (1108)
27 1wp9_A ATP-dependent RNA helic 100.0 1.3E-39 4.5E-44 298.6 27.8 295 55-353 9-450 (494)
28 2p6r_A Afuhel308 helicase; pro 100.0 8.6E-41 2.9E-45 317.7 19.6 301 34-346 2-346 (702)
29 4a2w_A RIG-I, retinoic acid in 100.0 5.3E-40 1.8E-44 319.1 24.6 308 46-353 239-725 (936)
30 4gl2_A Interferon-induced heli 100.0 2.7E-40 9.4E-45 315.4 14.2 298 55-353 7-495 (699)
31 2xgj_A ATP-dependent RNA helic 100.0 8.1E-38 2.8E-42 303.6 30.0 285 48-349 80-463 (1010)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 5.6E-40 1.9E-44 321.4 14.8 281 46-350 48-352 (1054)
33 3fe2_A Probable ATP-dependent 100.0 1.1E-37 3.8E-42 258.6 23.5 220 20-239 16-240 (242)
34 1vec_A ATP-dependent RNA helic 100.0 1.6E-36 5.4E-41 245.9 25.2 202 33-234 3-205 (206)
35 2oca_A DAR protein, ATP-depend 100.0 6.1E-38 2.1E-42 288.5 17.3 285 55-353 113-429 (510)
36 3bor_A Human initiation factor 100.0 5.6E-37 1.9E-41 253.5 21.2 211 26-236 23-234 (237)
37 4a4z_A Antiviral helicase SKI2 100.0 1.3E-36 4.3E-41 295.3 25.7 285 50-351 35-453 (997)
38 1q0u_A Bstdead; DEAD protein, 100.0 9.3E-37 3.2E-41 249.4 20.8 207 32-238 3-213 (219)
39 3ber_A Probable ATP-dependent 100.0 1.4E-36 4.6E-41 252.6 22.0 208 29-236 39-247 (249)
40 1qde_A EIF4A, translation init 100.0 2.6E-36 9.1E-41 247.8 23.2 210 29-239 10-219 (224)
41 1wrb_A DJVLGB; RNA helicase, D 100.0 1.3E-36 4.3E-41 254.2 21.5 218 31-248 21-251 (253)
42 1gm5_A RECG; helicase, replica 100.0 2E-37 7E-42 292.0 18.1 290 42-351 356-668 (780)
43 3iuy_A Probable ATP-dependent 100.0 3E-36 1E-40 248.0 22.0 209 26-235 12-227 (228)
44 2oxc_A Probable ATP-dependent 100.0 5.4E-36 1.9E-40 246.5 23.4 207 28-235 19-227 (230)
45 1tf5_A Preprotein translocase 100.0 1.1E-35 3.6E-40 275.5 27.1 294 50-353 79-519 (844)
46 2eyq_A TRCF, transcription-rep 100.0 2.9E-35 9.8E-40 289.8 30.7 293 38-350 586-892 (1151)
47 2fwr_A DNA repair protein RAD2 100.0 5.7E-37 2E-41 279.4 15.4 267 55-353 93-425 (472)
48 2gxq_A Heat resistant RNA depe 100.0 2.9E-35 9.8E-40 238.7 23.6 201 34-236 2-205 (207)
49 1t6n_A Probable ATP-dependent 100.0 3.6E-35 1.2E-39 240.3 23.0 204 32-235 13-219 (220)
50 2pl3_A Probable ATP-dependent 100.0 4.7E-35 1.6E-39 242.1 23.7 208 29-237 21-233 (236)
51 3fmo_B ATP-dependent RNA helic 100.0 3.7E-35 1.3E-39 250.1 22.7 205 30-237 89-298 (300)
52 3ly5_A ATP-dependent RNA helic 100.0 2E-34 6.8E-39 241.4 20.9 200 32-231 51-257 (262)
53 2fsf_A Preprotein translocase 100.0 2.1E-34 7.1E-39 266.2 21.1 281 51-341 71-508 (853)
54 3dkp_A Probable ATP-dependent 100.0 6.5E-34 2.2E-38 236.6 21.2 218 22-239 14-243 (245)
55 1nkt_A Preprotein translocase 100.0 4.5E-33 1.5E-37 257.7 28.5 280 51-341 108-527 (922)
56 4f92_B U5 small nuclear ribonu 100.0 2.8E-33 9.7E-38 283.1 28.7 301 40-346 911-1263(1724)
57 4f92_B U5 small nuclear ribonu 100.0 8.3E-34 2.8E-38 287.0 24.7 290 52-346 76-428 (1724)
58 2xau_A PRE-mRNA-splicing facto 100.0 9.7E-34 3.3E-38 268.8 20.8 306 29-349 68-396 (773)
59 3h1t_A Type I site-specific re 100.0 6.7E-34 2.3E-38 265.7 16.5 284 55-353 178-530 (590)
60 2jlq_A Serine protease subunit 100.0 1.8E-33 6.1E-38 253.4 16.7 257 52-348 1-259 (451)
61 2whx_A Serine protease/ntpase/ 100.0 3.9E-34 1.3E-38 265.1 10.9 272 38-349 155-427 (618)
62 3o8b_A HCV NS3 protease/helica 100.0 2E-32 6.9E-37 251.5 16.4 244 55-346 217-462 (666)
63 3dmq_A RNA polymerase-associat 100.0 4E-32 1.4E-36 264.3 18.8 291 55-353 153-587 (968)
64 1z63_A Helicase of the SNF2/RA 100.0 3.4E-31 1.1E-35 243.0 23.8 283 55-353 37-425 (500)
65 2wv9_A Flavivirin protease NS2 100.0 1.2E-32 3.9E-37 256.8 11.9 261 48-347 203-480 (673)
66 1yks_A Genome polyprotein [con 100.0 9.5E-34 3.3E-38 254.0 4.3 233 66-346 4-246 (440)
67 2v6i_A RNA helicase; membrane, 100.0 9.6E-32 3.3E-36 240.6 17.0 237 69-344 1-238 (431)
68 2z83_A Helicase/nucleoside tri 100.0 2E-31 6.7E-36 240.5 13.2 240 64-346 15-259 (459)
69 3mwy_W Chromo domain-containin 100.0 1.2E-29 4.1E-34 243.5 22.6 291 55-353 236-656 (800)
70 1z3i_X Similar to RAD54-like; 100.0 7.6E-29 2.6E-33 232.4 25.8 292 55-353 55-500 (644)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.3E-29 4.6E-34 244.9 19.6 284 55-352 271-678 (1038)
72 3rc3_A ATP-dependent RNA helic 100.0 3.6E-29 1.2E-33 232.6 21.4 247 65-350 150-399 (677)
73 3jux_A Protein translocase sub 100.0 3E-26 1E-30 208.1 29.8 290 51-353 72-561 (822)
74 2ipc_A Preprotein translocase 99.9 1.2E-23 4.3E-28 194.5 28.2 130 51-188 76-215 (997)
75 3b6e_A Interferon-induced heli 99.9 2.5E-25 8.4E-30 181.4 10.3 164 51-215 29-216 (216)
76 1rif_A DAR protein, DNA helica 99.9 1.9E-23 6.7E-28 176.9 11.4 154 55-220 113-266 (282)
77 1c4o_A DNA nucleotide excision 99.9 2.9E-21 9.8E-26 180.9 24.5 136 205-349 379-516 (664)
78 2vl7_A XPD; helicase, unknown 99.9 1.6E-22 5.6E-27 185.7 15.2 127 51-188 4-188 (540)
79 3crv_A XPD/RAD3 related DNA he 99.9 6E-21 2E-25 176.0 24.1 280 55-352 3-474 (551)
80 3llm_A ATP-dependent RNA helic 99.9 9.2E-22 3.1E-26 161.9 15.6 172 49-231 55-231 (235)
81 2d7d_A Uvrabc system protein B 99.9 9.1E-20 3.1E-24 170.7 24.9 139 205-352 385-530 (661)
82 2fz4_A DNA repair protein RAD2 99.9 4.5E-21 1.5E-25 157.4 14.1 138 55-219 93-231 (237)
83 2hjv_A ATP-dependent RNA helic 99.8 1.4E-19 4.8E-24 139.9 14.0 112 241-353 5-116 (163)
84 1t5i_A C_terminal domain of A 99.8 1.4E-19 4.6E-24 141.1 13.7 110 243-353 3-112 (172)
85 1fuk_A Eukaryotic initiation f 99.8 3E-19 1E-23 138.4 14.8 110 244-353 2-111 (165)
86 2p6n_A ATP-dependent RNA helic 99.8 1.3E-19 4.4E-24 143.5 12.0 126 226-353 10-135 (191)
87 2rb4_A ATP-dependent RNA helic 99.8 3.5E-19 1.2E-23 139.5 13.8 110 242-351 4-113 (175)
88 4a15_A XPD helicase, ATP-depen 99.8 2.9E-18 1E-22 159.3 19.1 81 55-137 3-87 (620)
89 2jgn_A DBX, DDX3, ATP-dependen 99.8 7.6E-19 2.6E-23 138.5 11.5 113 240-353 14-127 (185)
90 3eaq_A Heat resistant RNA depe 99.8 5.2E-18 1.8E-22 136.8 12.9 106 247-353 7-112 (212)
91 3i32_A Heat resistant RNA depe 99.8 1.3E-17 4.5E-22 140.7 14.1 107 246-353 3-109 (300)
92 2yjt_D ATP-dependent RNA helic 99.6 2.6E-19 9E-24 139.4 0.0 109 245-353 3-111 (170)
93 1z5z_A Helicase of the SNF2/RA 99.5 3E-14 1E-18 118.7 10.8 98 257-354 95-197 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 3E-09 1E-13 98.9 10.0 146 57-215 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.8 1.3E-08 4.4E-13 95.7 8.0 68 55-125 189-257 (646)
96 2gk6_A Regulator of nonsense t 98.7 2.3E-07 7.9E-12 86.7 14.6 69 54-124 179-247 (624)
97 2xzl_A ATP-dependent helicase 98.7 2E-07 6.7E-12 89.1 13.1 70 54-125 359-428 (802)
98 3e1s_A Exodeoxyribonuclease V, 98.6 3.1E-07 1.1E-11 84.6 12.7 127 55-215 189-315 (574)
99 3lfu_A DNA helicase II; SF1 he 98.6 2.9E-06 9.8E-11 80.1 19.2 70 54-125 8-78 (647)
100 2wjy_A Regulator of nonsense t 98.6 5.2E-07 1.8E-11 86.2 13.9 69 55-125 356-424 (800)
101 3upu_A ATP-dependent DNA helic 98.6 2.5E-07 8.4E-12 83.4 10.8 135 49-213 19-162 (459)
102 2o0j_A Terminase, DNA packagin 97.8 4.6E-05 1.6E-09 66.1 8.1 121 55-189 163-287 (385)
103 3vkw_A Replicase large subunit 97.8 8.6E-05 2.9E-09 65.3 9.5 108 71-215 162-269 (446)
104 3cpe_A Terminase, DNA packagin 97.7 0.00033 1.1E-08 65.0 12.8 148 55-218 163-315 (592)
105 1uaa_A REP helicase, protein ( 97.6 0.0001 3.4E-09 69.8 6.9 80 55-136 2-85 (673)
106 3ec2_A DNA replication protein 97.6 0.00022 7.6E-09 55.2 7.8 22 69-90 37-58 (180)
107 2orw_A Thymidine kinase; TMTK, 97.4 7.6E-05 2.6E-09 58.0 3.1 39 70-111 3-41 (184)
108 1xx6_A Thymidine kinase; NESG, 97.4 0.0004 1.4E-08 54.1 6.8 39 70-111 8-46 (191)
109 1pjr_A PCRA; DNA repair, DNA r 97.3 0.00044 1.5E-08 65.8 8.0 70 54-125 10-80 (724)
110 1w4r_A Thymidine kinase; type 97.3 0.0012 4.1E-08 51.1 8.5 38 70-110 20-57 (195)
111 3u4q_A ATP-dependent helicase/ 97.3 0.00048 1.6E-08 69.5 7.8 67 55-123 10-79 (1232)
112 3te6_A Regulatory protein SIR3 97.3 0.0029 1E-07 53.4 11.3 40 175-217 132-174 (318)
113 1l8q_A Chromosomal replication 97.2 0.0018 6.2E-08 55.2 10.2 20 70-89 37-56 (324)
114 2b8t_A Thymidine kinase; deoxy 97.2 0.00052 1.8E-08 54.8 6.0 113 70-215 12-124 (223)
115 2kjq_A DNAA-related protein; s 97.2 0.0003 1E-08 52.5 4.3 22 69-90 35-56 (149)
116 2j9r_A Thymidine kinase; TK1, 97.1 0.0012 4.1E-08 51.9 7.3 40 70-112 28-67 (214)
117 2chg_A Replication factor C sm 97.1 0.0061 2.1E-07 48.4 11.1 39 174-213 101-139 (226)
118 1a5t_A Delta prime, HOLB; zinc 97.0 0.0032 1.1E-07 53.9 9.7 38 56-93 3-47 (334)
119 3co5_A Putative two-component 97.0 0.0016 5.5E-08 48.1 6.6 18 68-85 25-42 (143)
120 3hgt_A HDA1 complex subunit 3; 97.0 0.0056 1.9E-07 51.3 10.0 92 257-353 108-206 (328)
121 2z4s_A Chromosomal replication 96.9 0.0035 1.2E-07 55.8 9.0 38 70-108 130-167 (440)
122 2zpa_A Uncharacterized protein 96.9 0.0031 1.1E-07 58.4 8.3 112 55-216 175-288 (671)
123 2orv_A Thymidine kinase; TP4A 96.8 0.0039 1.3E-07 49.6 7.4 40 70-112 19-58 (234)
124 2v1u_A Cell division control p 96.7 0.0087 3E-07 52.2 10.2 20 70-89 44-63 (387)
125 3bos_A Putative DNA replicatio 96.7 0.0046 1.6E-07 49.9 7.7 21 69-89 51-71 (242)
126 4b4t_M 26S protease regulatory 96.7 0.0046 1.6E-07 54.5 7.7 54 30-86 175-231 (434)
127 3h4m_A Proteasome-activating n 96.7 0.0063 2.1E-07 50.7 8.3 55 32-88 13-69 (285)
128 4b4t_J 26S protease regulatory 96.6 0.0072 2.5E-07 52.5 8.4 52 32-86 144-198 (405)
129 3n70_A Transport activator; si 96.6 0.021 7.2E-07 42.1 10.0 21 68-88 22-42 (145)
130 2w58_A DNAI, primosome compone 96.6 0.014 4.9E-07 45.7 9.5 19 71-89 55-73 (202)
131 1d2n_A N-ethylmaleimide-sensit 96.6 0.019 6.6E-07 47.4 10.5 19 71-89 65-83 (272)
132 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0053 1.8E-07 48.2 6.3 40 70-112 28-67 (219)
133 3syl_A Protein CBBX; photosynt 96.5 0.0024 8.3E-08 54.0 4.8 19 70-88 67-85 (309)
134 2qby_B CDC6 homolog 3, cell di 96.4 0.0046 1.6E-07 54.0 6.3 20 70-89 45-64 (384)
135 1jbk_A CLPB protein; beta barr 96.4 0.058 2E-06 41.4 12.0 19 70-88 43-61 (195)
136 3u61_B DNA polymerase accessor 96.4 0.0091 3.1E-07 50.8 7.8 40 175-215 105-144 (324)
137 2p65_A Hypothetical protein PF 96.3 0.01 3.5E-07 45.6 7.2 21 70-90 43-63 (187)
138 1iqp_A RFCS; clamp loader, ext 96.3 0.016 5.5E-07 49.2 9.0 38 174-212 109-146 (327)
139 3kl4_A SRP54, signal recogniti 96.3 0.015 5.2E-07 51.2 8.7 131 71-227 98-234 (433)
140 3eie_A Vacuolar protein sortin 96.3 0.0096 3.3E-07 50.6 7.4 54 32-88 14-69 (322)
141 1fnn_A CDC6P, cell division co 96.3 0.0066 2.3E-07 53.0 6.5 18 72-89 46-63 (389)
142 1gm5_A RECG; helicase, replica 96.3 0.012 4.1E-07 56.1 8.4 75 272-346 417-496 (780)
143 2qby_A CDC6 homolog 1, cell di 96.2 0.016 5.5E-07 50.4 8.7 20 70-89 45-64 (386)
144 2gno_A DNA polymerase III, gam 96.2 0.019 6.6E-07 48.3 8.6 39 174-213 81-119 (305)
145 1sxj_D Activator 1 41 kDa subu 96.1 0.011 3.6E-07 51.0 6.9 38 175-213 133-170 (353)
146 1sxj_E Activator 1 40 kDa subu 96.1 0.024 8.1E-07 48.8 9.0 42 174-216 133-174 (354)
147 1g5t_A COB(I)alamin adenosyltr 96.1 0.037 1.3E-06 42.9 8.8 141 70-224 28-171 (196)
148 3cf0_A Transitional endoplasmi 96.1 0.017 5.9E-07 48.5 7.7 56 32-88 11-67 (301)
149 4b4t_K 26S protease regulatory 96.0 0.022 7.4E-07 50.2 8.3 53 32-87 168-223 (428)
150 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.022 7.4E-07 48.4 7.8 54 32-88 8-63 (322)
151 1sxj_C Activator 1 40 kDa subu 95.9 0.035 1.2E-06 47.5 8.9 38 175-213 110-147 (340)
152 1njg_A DNA polymerase III subu 95.9 0.083 2.8E-06 42.3 10.8 18 72-89 47-64 (250)
153 4b4t_H 26S protease regulatory 95.8 0.032 1.1E-06 49.3 8.2 53 32-87 205-260 (467)
154 3uk6_A RUVB-like 2; hexameric 95.8 0.065 2.2E-06 46.3 10.3 20 70-89 70-89 (368)
155 3dm5_A SRP54, signal recogniti 95.8 0.12 4E-06 45.7 11.7 57 71-133 101-159 (443)
156 4b4t_I 26S protease regulatory 95.7 0.028 9.6E-07 49.2 7.5 55 30-87 176-233 (437)
157 2dr3_A UPF0273 protein PH0284; 95.7 0.039 1.3E-06 44.6 8.0 53 68-124 21-73 (247)
158 1sxj_B Activator 1 37 kDa subu 95.6 0.023 7.8E-07 48.1 6.8 38 175-213 107-144 (323)
159 3oiy_A Reverse gyrase helicase 95.6 0.059 2E-06 47.5 9.6 76 271-346 63-145 (414)
160 3pfi_A Holliday junction ATP-d 95.6 0.026 8.7E-07 48.3 6.9 18 71-88 56-73 (338)
161 3pvs_A Replication-associated 95.5 0.014 4.8E-07 51.9 5.1 18 71-88 51-68 (447)
162 2bjv_A PSP operon transcriptio 95.5 0.09 3.1E-06 43.1 9.6 19 69-87 28-46 (265)
163 3hu3_A Transitional endoplasmi 95.4 0.061 2.1E-06 48.4 8.9 43 176-218 298-350 (489)
164 2zan_A Vacuolar protein sortin 95.4 0.037 1.3E-06 49.3 7.4 55 31-88 129-185 (444)
165 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.056 1.9E-06 43.2 7.6 40 67-109 20-59 (235)
166 2qp9_X Vacuolar protein sortin 95.2 0.066 2.3E-06 46.1 8.1 19 70-88 84-102 (355)
167 3vfd_A Spastin; ATPase, microt 95.1 0.086 3E-06 46.0 8.9 19 70-88 148-166 (389)
168 1w5s_A Origin recognition comp 95.0 0.052 1.8E-06 47.7 7.3 20 70-89 50-71 (412)
169 3cf2_A TER ATPase, transitiona 94.8 0.032 1.1E-06 53.2 5.5 52 31-85 472-526 (806)
170 2chq_A Replication factor C sm 94.8 0.021 7.2E-07 48.2 3.9 17 72-88 40-56 (319)
171 1sxj_A Activator 1 95 kDa subu 94.8 0.086 2.9E-06 48.0 8.1 41 174-216 147-189 (516)
172 4a1f_A DNAB helicase, replicat 94.8 0.055 1.9E-06 46.0 6.3 52 66-121 42-93 (338)
173 2eyq_A TRCF, transcription-rep 94.7 0.12 4.2E-06 51.7 9.7 76 271-346 651-731 (1151)
174 3ber_A Probable ATP-dependent 94.4 0.29 1E-05 39.6 9.8 72 271-346 110-192 (249)
175 4ddu_A Reverse gyrase; topoiso 94.4 0.087 3E-06 52.5 7.6 76 271-346 120-202 (1104)
176 1jr3_A DNA polymerase III subu 94.2 0.22 7.7E-06 42.9 9.3 37 174-211 118-154 (373)
177 2q6t_A DNAB replication FORK h 94.2 0.2 6.7E-06 44.6 8.9 41 67-109 197-237 (444)
178 1n0w_A DNA repair protein RAD5 94.2 0.27 9.2E-06 39.4 9.1 27 67-93 21-47 (243)
179 3hr8_A Protein RECA; alpha and 94.0 0.049 1.7E-06 46.7 4.4 41 70-113 61-101 (356)
180 1xp8_A RECA protein, recombina 94.0 0.072 2.5E-06 45.9 5.5 40 69-111 73-112 (366)
181 1t6n_A Probable ATP-dependent 94.0 0.34 1.2E-05 38.2 9.2 71 273-346 83-164 (220)
182 2r6a_A DNAB helicase, replicat 93.9 0.24 8.3E-06 44.2 9.0 41 67-109 200-240 (454)
183 2zr9_A Protein RECA, recombina 93.7 0.031 1.1E-06 48.0 2.6 40 69-111 60-99 (349)
184 2l8b_A Protein TRAI, DNA helic 93.5 0.089 3E-06 39.9 4.4 122 56-215 35-158 (189)
185 3cf2_A TER ATPase, transitiona 93.4 0.11 3.9E-06 49.5 6.1 41 175-215 297-347 (806)
186 2oxc_A Probable ATP-dependent 93.4 0.29 1E-05 39.0 7.8 71 271-346 91-172 (230)
187 3cmu_A Protein RECA, recombina 93.3 0.1 3.5E-06 54.6 6.0 42 69-113 1426-1467(2050)
188 1u94_A RECA protein, recombina 93.2 0.046 1.6E-06 47.0 2.8 40 69-111 62-101 (356)
189 3fe2_A Probable ATP-dependent 92.6 0.57 2E-05 37.6 8.6 71 272-346 102-182 (242)
190 1ls1_A Signal recognition part 92.5 0.57 1.9E-05 39.0 8.6 24 70-93 98-121 (295)
191 3io5_A Recombination and repai 92.4 0.095 3.3E-06 43.9 3.5 43 72-115 30-72 (333)
192 3b85_A Phosphate starvation-in 92.2 0.16 5.4E-06 40.0 4.5 37 53-89 5-41 (208)
193 1oyw_A RECQ helicase, ATP-depe 92.0 0.37 1.3E-05 43.8 7.4 59 272-330 65-123 (523)
194 3iuy_A Probable ATP-dependent 91.9 0.45 1.5E-05 37.8 7.1 72 271-346 93-173 (228)
195 4b4t_L 26S protease subunit RP 91.9 0.039 1.3E-06 48.7 0.7 54 31-87 176-232 (437)
196 3bor_A Human initiation factor 91.7 0.49 1.7E-05 37.9 7.1 73 271-346 97-179 (237)
197 2v1x_A ATP-dependent DNA helic 91.4 0.65 2.2E-05 42.9 8.4 59 272-330 84-144 (591)
198 1xti_A Probable ATP-dependent 91.4 0.95 3.2E-05 39.1 9.2 72 272-346 76-158 (391)
199 2oap_1 GSPE-2, type II secreti 91.4 0.58 2E-05 42.3 7.8 48 45-95 236-284 (511)
200 1vec_A ATP-dependent RNA helic 91.3 1.1 3.6E-05 34.8 8.6 71 272-346 71-152 (206)
201 2qgz_A Helicase loader, putati 91.2 0.2 6.7E-06 42.2 4.4 25 70-94 152-176 (308)
202 1w36_B RECB, exodeoxyribonucle 91.2 0.34 1.2E-05 48.9 6.7 54 71-124 17-79 (1180)
203 3pxi_A Negative regulator of g 91.0 0.19 6.5E-06 48.1 4.5 17 72-88 523-539 (758)
204 1qvr_A CLPB protein; coiled co 90.5 0.55 1.9E-05 45.6 7.3 20 70-89 191-210 (854)
205 2hjv_A ATP-dependent RNA helic 90.3 1.3 4.4E-05 33.0 7.8 72 102-183 36-111 (163)
206 1c9k_A COBU, adenosylcobinamid 90.3 0.37 1.3E-05 36.7 4.7 46 73-125 2-47 (180)
207 2rb4_A ATP-dependent RNA helic 90.3 1.7 6E-05 32.7 8.7 73 100-182 33-109 (175)
208 3ly5_A ATP-dependent RNA helic 90.2 1.7 5.7E-05 35.4 9.0 71 272-346 126-207 (262)
209 3u4q_B ATP-dependent helicase/ 89.8 0.19 6.6E-06 50.6 3.6 49 73-122 4-52 (1166)
210 1ypw_A Transitional endoplasmi 89.8 1.1 3.7E-05 43.2 8.6 19 69-87 237-255 (806)
211 1qde_A EIF4A, translation init 89.7 0.63 2.2E-05 36.7 6.0 71 271-346 81-161 (224)
212 2l82_A Designed protein OR32; 89.7 2 6.7E-05 28.9 7.2 48 275-322 5-52 (162)
213 2pl3_A Probable ATP-dependent 89.7 0.91 3.1E-05 36.2 7.0 70 272-346 97-177 (236)
214 3hjh_A Transcription-repair-co 89.7 0.57 2E-05 42.0 6.2 74 260-346 371-444 (483)
215 2zts_A Putative uncharacterize 89.7 0.17 5.9E-06 40.8 2.6 52 69-123 29-80 (251)
216 2i1q_A DNA repair and recombin 89.6 0.41 1.4E-05 40.4 5.0 55 70-124 98-166 (322)
217 3e70_C DPA, signal recognition 89.5 1.3 4.5E-05 37.4 8.0 54 175-228 211-265 (328)
218 1wrb_A DJVLGB; RNA helicase, D 89.4 1.4 4.8E-05 35.5 8.0 70 273-346 101-180 (253)
219 2gxq_A Heat resistant RNA depe 89.4 1.7 5.8E-05 33.6 8.2 71 272-346 72-150 (207)
220 2x8a_A Nuclear valosin-contain 89.3 0.12 4.1E-06 42.7 1.4 53 32-87 6-61 (274)
221 2qmh_A HPR kinase/phosphorylas 89.1 0.2 6.8E-06 38.8 2.4 21 70-90 34-54 (205)
222 1kgd_A CASK, peripheral plasma 89.0 0.25 8.5E-06 37.7 3.0 21 69-89 4-24 (180)
223 1p9r_A General secretion pathw 88.9 0.52 1.8E-05 41.4 5.2 30 59-88 154-185 (418)
224 1fuk_A Eukaryotic initiation f 88.9 2.3 7.9E-05 31.6 8.3 73 101-183 30-106 (165)
225 2z43_A DNA repair and recombin 88.8 0.63 2.2E-05 39.3 5.6 55 70-124 107-165 (324)
226 2eyu_A Twitching motility prot 88.7 0.23 7.7E-06 40.6 2.6 23 67-89 22-44 (261)
227 1t5i_A C_terminal domain of A 88.6 3.5 0.00012 30.9 9.3 74 101-184 31-108 (172)
228 3vkg_A Dynein heavy chain, cyt 88.5 1.3 4.5E-05 48.8 8.8 69 41-110 874-946 (3245)
229 1u0j_A DNA replication protein 88.5 0.93 3.2E-05 36.9 6.1 46 43-90 74-124 (267)
230 2cvh_A DNA repair and recombin 88.5 0.27 9.3E-06 38.7 3.0 37 67-109 17-53 (220)
231 2ius_A DNA translocase FTSK; n 88.4 0.51 1.8E-05 42.5 4.9 30 68-97 165-194 (512)
232 1ofh_A ATP-dependent HSL prote 88.4 1.2 4E-05 37.1 7.0 19 70-88 50-68 (310)
233 4f4c_A Multidrug resistance pr 88.4 0.49 1.7E-05 48.2 5.4 39 174-212 1234-1272(1321)
234 1tue_A Replication protein E1; 88.3 0.21 7.3E-06 38.9 2.1 18 71-88 59-76 (212)
235 3vaa_A Shikimate kinase, SK; s 88.3 0.3 1E-05 37.9 3.1 21 69-89 24-44 (199)
236 2r8r_A Sensor protein; KDPD, P 88.1 0.48 1.6E-05 37.5 4.0 27 72-98 8-34 (228)
237 2db3_A ATP-dependent RNA helic 88.1 2.1 7.3E-05 37.7 8.8 71 272-346 129-209 (434)
238 3nbx_X ATPase RAVA; AAA+ ATPas 88.1 0.68 2.3E-05 41.7 5.5 27 61-87 32-58 (500)
239 3bh0_A DNAB-like replicative h 87.9 0.47 1.6E-05 40.0 4.2 54 65-122 63-116 (315)
240 3tau_A Guanylate kinase, GMP k 87.9 0.33 1.1E-05 38.0 3.1 20 69-88 7-26 (208)
241 1zp6_A Hypothetical protein AT 87.7 0.24 8.1E-06 38.1 2.1 22 67-88 6-27 (191)
242 3hws_A ATP-dependent CLP prote 87.7 0.92 3.1E-05 39.0 6.0 20 69-88 50-69 (363)
243 2qor_A Guanylate kinase; phosp 87.7 0.34 1.2E-05 37.8 3.0 23 67-89 9-31 (204)
244 1q0u_A Bstdead; DEAD protein, 87.6 0.59 2E-05 36.8 4.4 71 272-346 72-156 (219)
245 3a8t_A Adenylate isopentenyltr 87.6 0.28 9.6E-06 41.5 2.6 22 70-91 40-61 (339)
246 3cmw_A Protein RECA, recombina 87.6 0.46 1.6E-05 49.2 4.5 91 70-189 1431-1523(1706)
247 4akg_A Glutathione S-transfera 87.5 0.9 3.1E-05 49.4 6.8 51 40-91 890-944 (2695)
248 1qhx_A CPT, protein (chloramph 87.5 0.28 9.6E-06 37.2 2.4 19 70-88 3-21 (178)
249 1ex7_A Guanylate kinase; subst 87.5 0.16 5.5E-06 39.0 1.0 16 71-86 2-17 (186)
250 3eaq_A Heat resistant RNA depe 87.5 2.3 7.8E-05 33.3 7.8 70 102-181 32-105 (212)
251 3trf_A Shikimate kinase, SK; a 87.5 0.36 1.2E-05 36.9 3.0 21 70-90 5-25 (185)
252 2gza_A Type IV secretion syste 87.4 0.36 1.2E-05 41.6 3.2 23 66-88 171-193 (361)
253 1wp9_A ATP-dependent RNA helic 87.3 3.1 0.00011 36.8 9.6 71 271-346 51-131 (494)
254 1e9r_A Conjugal transfer prote 87.3 0.47 1.6E-05 42.0 4.0 44 69-115 52-95 (437)
255 1lvg_A Guanylate kinase, GMP k 87.1 0.39 1.3E-05 37.3 3.0 21 69-89 3-23 (198)
256 4ag6_A VIRB4 ATPase, type IV s 87.0 0.65 2.2E-05 40.4 4.7 41 69-112 34-74 (392)
257 3iij_A Coilin-interacting nucl 86.9 0.42 1.4E-05 36.3 3.1 22 68-89 9-30 (180)
258 3lw7_A Adenylate kinase relate 86.9 0.29 1E-05 36.8 2.2 17 72-88 3-19 (179)
259 2j41_A Guanylate kinase; GMP, 86.8 0.4 1.4E-05 37.3 3.0 22 68-89 4-25 (207)
260 3fmo_B ATP-dependent RNA helic 86.8 0.76 2.6E-05 38.3 4.8 68 272-346 162-241 (300)
261 2r44_A Uncharacterized protein 86.7 0.34 1.2E-05 41.1 2.7 24 65-88 41-64 (331)
262 4gp7_A Metallophosphoesterase; 86.7 0.25 8.4E-06 37.4 1.6 21 68-88 7-27 (171)
263 2p6n_A ATP-dependent RNA helic 86.6 4 0.00014 31.3 8.6 72 102-183 55-130 (191)
264 1gku_B Reverse gyrase, TOP-RG; 86.5 1.3 4.3E-05 44.1 6.9 73 272-346 99-181 (1054)
265 3ney_A 55 kDa erythrocyte memb 86.5 0.46 1.6E-05 36.9 3.1 22 68-89 17-38 (197)
266 3bgw_A DNAB-like replicative h 86.5 1.4 4.7E-05 39.1 6.5 41 66-109 193-233 (444)
267 2i4i_A ATP-dependent RNA helic 86.4 4.2 0.00014 35.3 9.7 70 273-346 102-181 (417)
268 1fuu_A Yeast initiation factor 86.4 2.7 9.4E-05 36.1 8.5 71 271-346 88-168 (394)
269 2ffh_A Protein (FFH); SRP54, s 86.4 7.6 0.00026 34.1 11.0 24 71-94 99-122 (425)
270 3exa_A TRNA delta(2)-isopenten 86.4 0.36 1.2E-05 40.4 2.5 21 71-91 4-24 (322)
271 1ixz_A ATP-dependent metallopr 86.3 0.83 2.8E-05 36.9 4.8 55 31-88 11-67 (254)
272 1v5w_A DMC1, meiotic recombina 86.3 0.94 3.2E-05 38.6 5.2 55 70-124 122-180 (343)
273 3tr0_A Guanylate kinase, GMP k 86.3 0.46 1.6E-05 36.9 3.1 20 69-88 6-25 (205)
274 2jgn_A DBX, DDX3, ATP-dependen 86.1 2.3 7.7E-05 32.5 6.8 88 80-181 29-120 (185)
275 1kag_A SKI, shikimate kinase I 86.1 0.51 1.7E-05 35.5 3.1 19 70-88 4-22 (173)
276 3lda_A DNA repair protein RAD5 86.0 2.3 8E-05 37.0 7.6 25 30-54 81-105 (400)
277 1y63_A LMAJ004144AAA protein; 86.0 0.49 1.7E-05 36.2 3.0 20 69-88 9-28 (184)
278 2j37_W Signal recognition part 86.0 3.6 0.00012 37.0 9.0 35 72-109 103-137 (504)
279 2qz4_A Paraplegin; AAA+, SPG7, 85.9 0.45 1.6E-05 38.6 3.0 19 70-88 39-57 (262)
280 1kht_A Adenylate kinase; phosp 85.7 0.39 1.3E-05 36.8 2.4 19 70-88 3-21 (192)
281 3foz_A TRNA delta(2)-isopenten 85.7 0.44 1.5E-05 39.8 2.7 20 72-91 12-31 (316)
282 2ze6_A Isopentenyl transferase 85.6 0.45 1.5E-05 38.6 2.7 19 72-90 3-21 (253)
283 2pt7_A CAG-ALFA; ATPase, prote 85.5 0.43 1.5E-05 40.5 2.7 20 67-86 168-187 (330)
284 2ehv_A Hypothetical protein PH 85.5 0.65 2.2E-05 37.3 3.7 26 66-91 26-51 (251)
285 1ly1_A Polynucleotide kinase; 85.5 0.38 1.3E-05 36.4 2.2 17 72-88 4-20 (181)
286 4f4c_A Multidrug resistance pr 85.4 0.17 5.8E-06 51.6 0.1 34 174-207 571-604 (1321)
287 1nlf_A Regulatory protein REPA 85.4 1.2 4.1E-05 36.6 5.3 28 65-92 25-52 (279)
288 3a00_A Guanylate kinase, GMP k 85.2 0.58 2E-05 35.8 3.1 18 71-88 2-19 (186)
289 3b9p_A CG5977-PA, isoform A; A 85.1 0.49 1.7E-05 39.3 2.9 54 32-88 17-72 (297)
290 2iut_A DNA translocase FTSK; n 85.1 1 3.4E-05 41.1 4.9 41 70-110 214-255 (574)
291 1z6g_A Guanylate kinase; struc 85.0 0.62 2.1E-05 36.8 3.3 22 67-88 20-41 (218)
292 3jvv_A Twitching mobility prot 84.8 0.46 1.6E-05 40.8 2.5 20 69-88 122-141 (356)
293 2ewv_A Twitching motility prot 84.7 0.44 1.5E-05 41.2 2.4 23 67-89 133-155 (372)
294 2r2a_A Uncharacterized protein 84.7 0.58 2E-05 36.4 2.9 23 72-94 7-29 (199)
295 3t15_A Ribulose bisphosphate c 84.7 0.48 1.6E-05 39.4 2.6 18 71-88 37-54 (293)
296 4eun_A Thermoresistant glucoki 84.6 0.62 2.1E-05 36.1 3.1 20 69-88 28-47 (200)
297 1knq_A Gluconate kinase; ALFA/ 84.4 0.41 1.4E-05 36.1 1.9 19 70-88 8-26 (175)
298 4a2p_A RIG-I, retinoic acid in 84.4 2.3 7.8E-05 38.7 7.2 71 272-346 55-136 (556)
299 3kb2_A SPBC2 prophage-derived 84.4 0.58 2E-05 35.1 2.7 17 72-88 3-19 (173)
300 3lnc_A Guanylate kinase, GMP k 84.3 0.39 1.3E-05 38.3 1.8 22 67-88 24-45 (231)
301 1lv7_A FTSH; alpha/beta domain 84.0 0.62 2.1E-05 37.8 2.9 54 32-88 8-63 (257)
302 1znw_A Guanylate kinase, GMP k 84.0 0.68 2.3E-05 36.1 3.1 23 66-88 16-38 (207)
303 2px0_A Flagellar biosynthesis 83.8 1 3.5E-05 37.5 4.2 25 70-94 105-129 (296)
304 1cr0_A DNA primase/helicase; R 83.8 0.95 3.2E-05 37.6 4.0 42 66-109 31-72 (296)
305 3umf_A Adenylate kinase; rossm 83.6 0.56 1.9E-05 37.0 2.4 22 69-90 28-49 (217)
306 3tbk_A RIG-I helicase domain; 83.5 1.6 5.6E-05 39.6 5.8 71 272-346 52-133 (555)
307 3cm0_A Adenylate kinase; ATP-b 83.4 0.5 1.7E-05 36.0 2.0 20 70-89 4-23 (186)
308 3b5x_A Lipid A export ATP-bind 83.3 2.5 8.5E-05 39.0 6.9 38 174-211 497-534 (582)
309 1hv8_A Putative ATP-dependent 83.0 7 0.00024 33.0 9.4 71 271-346 73-153 (367)
310 3crm_A TRNA delta(2)-isopenten 82.9 0.68 2.3E-05 39.0 2.7 19 72-90 7-25 (323)
311 1s2m_A Putative ATP-dependent 82.8 4.5 0.00015 34.9 8.2 72 271-346 88-169 (400)
312 1zuh_A Shikimate kinase; alpha 82.8 0.77 2.6E-05 34.3 2.8 19 71-89 8-26 (168)
313 2rhm_A Putative kinase; P-loop 82.6 0.51 1.8E-05 36.2 1.8 20 70-89 5-24 (193)
314 1nij_A Hypothetical protein YJ 82.6 0.77 2.6E-05 38.7 3.0 17 72-88 6-22 (318)
315 1s96_A Guanylate kinase, GMP k 82.6 0.84 2.9E-05 36.1 3.1 22 67-88 13-34 (219)
316 3i5x_A ATP-dependent RNA helic 82.5 12 0.0004 34.1 11.2 91 87-184 325-419 (563)
317 3sr0_A Adenylate kinase; phosp 82.5 0.77 2.6E-05 35.9 2.8 19 72-90 2-20 (206)
318 3eiq_A Eukaryotic initiation f 82.5 5.6 0.00019 34.4 8.7 73 271-346 107-189 (414)
319 3qf4_A ABC transporter, ATP-bi 82.3 0.33 1.1E-05 44.9 0.7 38 174-211 496-533 (587)
320 2c9o_A RUVB-like 1; hexameric 82.3 0.74 2.5E-05 41.0 2.9 20 70-89 63-82 (456)
321 3d3q_A TRNA delta(2)-isopenten 82.1 0.77 2.6E-05 38.9 2.8 19 72-90 9-27 (340)
322 1tev_A UMP-CMP kinase; ploop, 81.9 0.58 2E-05 35.9 1.9 19 70-88 3-21 (196)
323 3nwj_A ATSK2; P loop, shikimat 81.9 1 3.5E-05 36.4 3.4 21 69-89 47-67 (250)
324 3nwn_A Kinesin-like protein KI 81.9 0.95 3.2E-05 38.7 3.3 27 63-89 96-124 (359)
325 1ojl_A Transcriptional regulat 81.6 0.96 3.3E-05 37.8 3.2 19 69-87 24-42 (304)
326 1gvn_B Zeta; postsegregational 81.6 0.64 2.2E-05 38.5 2.1 18 71-88 34-51 (287)
327 2c95_A Adenylate kinase 1; tra 81.5 0.93 3.2E-05 34.8 3.0 21 69-89 8-28 (196)
328 1iy2_A ATP-dependent metallopr 81.5 0.75 2.6E-05 37.8 2.5 55 31-88 35-91 (278)
329 1via_A Shikimate kinase; struc 81.3 0.99 3.4E-05 34.0 3.0 18 72-89 6-23 (175)
330 2qt1_A Nicotinamide riboside k 81.2 0.54 1.8E-05 36.7 1.5 26 63-88 14-39 (207)
331 2v54_A DTMP kinase, thymidylat 81.2 1 3.4E-05 34.9 3.1 21 69-89 3-23 (204)
332 2bdt_A BH3686; alpha-beta prot 81.2 0.66 2.2E-05 35.5 2.0 19 71-89 3-21 (189)
333 3dkp_A Probable ATP-dependent 81.2 1.3 4.6E-05 35.4 3.9 72 272-346 98-181 (245)
334 2iyv_A Shikimate kinase, SK; t 81.2 1.1 3.7E-05 34.1 3.2 18 71-88 3-20 (184)
335 3uie_A Adenylyl-sulfate kinase 81.1 0.84 2.9E-05 35.3 2.6 21 68-88 23-43 (200)
336 1ye8_A Protein THEP1, hypothet 81.1 0.96 3.3E-05 34.4 2.8 16 72-87 2-17 (178)
337 1zd8_A GTP:AMP phosphotransfer 81.1 0.9 3.1E-05 36.0 2.8 19 70-88 7-25 (227)
338 1aky_A Adenylate kinase; ATP:A 81.1 1 3.4E-05 35.5 3.1 20 70-89 4-23 (220)
339 1in4_A RUVB, holliday junction 81.0 0.95 3.2E-05 38.4 3.0 18 71-88 52-69 (334)
340 1um8_A ATP-dependent CLP prote 80.9 0.97 3.3E-05 39.0 3.1 19 70-88 72-90 (376)
341 3c8u_A Fructokinase; YP_612366 80.9 0.83 2.9E-05 35.7 2.5 19 69-87 21-39 (208)
342 3t61_A Gluconokinase; PSI-biol 80.9 0.94 3.2E-05 35.1 2.8 18 71-88 19-36 (202)
343 3tif_A Uncharacterized ABC tra 80.9 0.75 2.6E-05 36.8 2.2 18 68-85 29-46 (235)
344 4a74_A DNA repair and recombin 80.8 0.69 2.4E-05 36.6 2.0 25 67-91 22-46 (231)
345 1vma_A Cell division protein F 80.8 1.4 4.7E-05 36.9 3.9 23 71-93 105-127 (306)
346 4a82_A Cystic fibrosis transme 80.8 0.28 9.7E-06 45.2 -0.3 34 174-207 494-527 (578)
347 1nks_A Adenylate kinase; therm 80.8 0.7 2.4E-05 35.3 2.0 18 72-89 3-20 (194)
348 3dl0_A Adenylate kinase; phosp 80.7 0.92 3.1E-05 35.6 2.7 18 72-89 2-19 (216)
349 3tlx_A Adenylate kinase 2; str 80.7 1.2 4E-05 35.9 3.3 21 70-90 29-49 (243)
350 3fb4_A Adenylate kinase; psych 80.6 0.96 3.3E-05 35.4 2.8 18 72-89 2-19 (216)
351 3sqw_A ATP-dependent RNA helic 80.6 17 0.00057 33.4 11.5 87 91-184 278-368 (579)
352 1bg2_A Kinesin; motor protein, 80.6 1.2 4.2E-05 37.5 3.5 27 63-89 69-97 (325)
353 2r62_A Cell division protease 80.5 0.51 1.7E-05 38.5 1.1 19 70-88 44-62 (268)
354 2j0s_A ATP-dependent RNA helic 80.4 5.8 0.0002 34.4 8.1 72 271-346 104-185 (410)
355 1zak_A Adenylate kinase; ATP:A 80.3 1.1 3.7E-05 35.4 3.0 20 70-89 5-24 (222)
356 2i3b_A HCR-ntpase, human cance 80.2 1.2 4.2E-05 34.2 3.1 41 173-216 103-145 (189)
357 3d8b_A Fidgetin-like protein 1 80.2 1 3.4E-05 38.7 2.9 20 70-89 117-136 (357)
358 3eph_A TRNA isopentenyltransfe 80.2 0.88 3E-05 39.5 2.5 20 72-91 4-23 (409)
359 2v9p_A Replication protein E1; 79.9 1.1 3.7E-05 37.5 2.9 21 68-88 124-144 (305)
360 2vli_A Antibiotic resistance p 79.7 0.72 2.5E-05 35.0 1.7 20 70-89 5-24 (183)
361 1e6c_A Shikimate kinase; phosp 79.7 1.2 4.2E-05 33.3 3.0 18 71-88 3-20 (173)
362 2cdn_A Adenylate kinase; phosp 79.5 1.2 4.3E-05 34.3 3.1 19 70-88 20-38 (201)
363 1sgw_A Putative ABC transporte 79.5 0.94 3.2E-05 35.7 2.3 19 68-86 33-51 (214)
364 2pez_A Bifunctional 3'-phospho 79.4 0.83 2.8E-05 34.6 2.0 20 69-88 4-23 (179)
365 1m7g_A Adenylylsulfate kinase; 79.3 1.1 3.8E-05 35.0 2.7 22 67-88 22-43 (211)
366 3gk5_A Uncharacterized rhodane 79.2 1.7 5.9E-05 29.7 3.4 36 271-306 54-89 (108)
367 2plr_A DTMP kinase, probable t 79.2 1 3.6E-05 35.0 2.5 20 70-89 4-23 (213)
368 1q57_A DNA primase/helicase; d 79.2 1.2 4E-05 40.3 3.2 52 67-121 239-290 (503)
369 2bwj_A Adenylate kinase 5; pho 79.2 1.1 3.9E-05 34.4 2.7 20 69-88 11-30 (199)
370 2cbz_A Multidrug resistance-as 79.2 0.92 3.1E-05 36.4 2.2 19 68-86 29-47 (237)
371 1goj_A Kinesin, kinesin heavy 79.1 1.4 4.9E-05 37.6 3.5 25 64-88 73-99 (355)
372 3foj_A Uncharacterized protein 79.0 1.8 6.3E-05 29.0 3.4 36 271-306 55-90 (100)
373 1zu4_A FTSY; GTPase, signal re 79.0 1.7 5.9E-05 36.6 3.9 23 71-93 106-128 (320)
374 1f9v_A Kinesin-like protein KA 78.9 1.5 5.3E-05 37.3 3.6 26 63-88 76-103 (347)
375 2vvg_A Kinesin-2; motor protei 78.9 1.5 5E-05 37.4 3.5 24 65-88 83-108 (350)
376 1rj9_A FTSY, signal recognitio 78.9 2.2 7.4E-05 35.6 4.5 21 70-90 102-122 (304)
377 3lre_A Kinesin-like protein KI 78.9 1.4 4.9E-05 37.6 3.4 25 64-88 98-124 (355)
378 3dc4_A Kinesin-like protein NO 78.8 1.3 4.6E-05 37.6 3.2 23 65-87 88-112 (344)
379 2wwf_A Thymidilate kinase, put 78.7 1.2 4.2E-05 34.6 2.9 22 69-90 9-30 (212)
380 3t0q_A AGR253WP; kinesin, alph 78.7 1.6 5.5E-05 37.2 3.7 26 63-88 77-104 (349)
381 2h58_A Kinesin-like protein KI 78.7 1.5 5.2E-05 37.0 3.5 26 63-88 72-99 (330)
382 3ice_A Transcription terminati 78.7 1.4 4.8E-05 38.1 3.2 22 67-88 171-192 (422)
383 4fcw_A Chaperone protein CLPB; 78.6 1.1 3.7E-05 37.4 2.6 18 71-88 48-65 (311)
384 1t5c_A CENP-E protein, centrom 78.6 1.4 4.8E-05 37.5 3.3 26 63-88 69-96 (349)
385 3eme_A Rhodanese-like domain p 78.6 1.7 5.9E-05 29.3 3.2 36 271-306 55-90 (103)
386 3b6u_A Kinesin-like protein KI 78.6 1.4 4.8E-05 37.8 3.3 25 64-88 94-120 (372)
387 1qf9_A UMP/CMP kinase, protein 78.5 1.2 4E-05 34.0 2.6 18 71-88 7-24 (194)
388 1ak2_A Adenylate kinase isoenz 78.4 1.4 4.7E-05 35.1 3.1 21 70-90 16-36 (233)
389 2nr8_A Kinesin-like protein KI 78.4 1.4 4.9E-05 37.6 3.3 26 63-88 95-122 (358)
390 2zfi_A Kinesin-like protein KI 78.3 1.5 5.3E-05 37.6 3.5 26 63-88 81-108 (366)
391 2yvu_A Probable adenylyl-sulfa 78.3 1.2 4E-05 34.0 2.5 20 70-89 13-32 (186)
392 3tqc_A Pantothenate kinase; bi 78.2 3.2 0.00011 34.9 5.3 16 72-87 94-109 (321)
393 2y65_A Kinesin, kinesin heavy 78.2 1.6 5.6E-05 37.4 3.5 25 64-88 77-103 (365)
394 3gbj_A KIF13B protein; kinesin 78.1 1.5 5.1E-05 37.5 3.3 26 63-88 84-111 (354)
395 1ukz_A Uridylate kinase; trans 78.0 1 3.6E-05 34.8 2.2 17 71-87 16-32 (203)
396 1f2t_A RAD50 ABC-ATPase; DNA d 78.0 1.1 3.7E-05 32.9 2.2 16 72-87 25-40 (149)
397 4etp_A Kinesin-like protein KA 78.0 1.6 5.4E-05 38.1 3.5 26 63-88 132-159 (403)
398 2pt5_A Shikimate kinase, SK; a 78.0 1.1 3.6E-05 33.4 2.2 17 72-88 2-18 (168)
399 2jaq_A Deoxyguanosine kinase; 77.9 1.3 4.5E-05 34.2 2.7 17 72-88 2-18 (205)
400 1v8k_A Kinesin-like protein KI 77.9 1.5 5.2E-05 38.1 3.3 27 63-89 146-174 (410)
401 3a4m_A L-seryl-tRNA(SEC) kinas 77.8 1 3.5E-05 36.6 2.2 19 71-89 5-23 (260)
402 3gfo_A Cobalt import ATP-bindi 77.8 1 3.4E-05 37.1 2.1 19 68-86 32-50 (275)
403 4a14_A Kinesin, kinesin-like p 77.8 1.7 5.8E-05 37.0 3.5 25 64-88 76-102 (344)
404 3be4_A Adenylate kinase; malar 77.8 1.4 4.6E-05 34.7 2.8 20 70-89 5-24 (217)
405 2z0h_A DTMP kinase, thymidylat 77.8 1.1 3.7E-05 34.4 2.2 17 73-89 3-19 (197)
406 3b9q_A Chloroplast SRP recepto 77.8 2 6.7E-05 35.9 3.9 21 70-90 100-120 (302)
407 2pze_A Cystic fibrosis transme 77.7 1 3.6E-05 35.8 2.1 19 68-86 32-50 (229)
408 1x88_A Kinesin-like protein KI 77.7 1.4 4.9E-05 37.7 3.1 27 63-89 80-108 (359)
409 1hqc_A RUVB; extended AAA-ATPa 77.7 1.1 3.8E-05 37.6 2.4 19 70-88 38-56 (324)
410 1nn5_A Similar to deoxythymidy 77.6 1.4 4.9E-05 34.3 2.9 22 69-90 8-29 (215)
411 1e4v_A Adenylate kinase; trans 77.6 1.2 4.2E-05 34.8 2.5 18 72-89 2-19 (214)
412 2pbr_A DTMP kinase, thymidylat 77.5 1.1 3.8E-05 34.3 2.2 18 72-89 2-19 (195)
413 3asz_A Uridine kinase; cytidin 77.5 1.2 4E-05 34.7 2.4 20 69-88 5-24 (211)
414 2pcj_A ABC transporter, lipopr 77.4 1 3.4E-05 35.8 1.9 19 68-86 28-46 (224)
415 4a2q_A RIG-I, retinoic acid in 77.4 4.4 0.00015 38.9 6.8 71 272-346 296-377 (797)
416 2bbw_A Adenylate kinase 4, AK4 77.1 1.5 5.1E-05 35.2 3.0 19 70-88 27-45 (246)
417 1xjc_A MOBB protein homolog; s 77.1 2.1 7.2E-05 32.2 3.5 17 72-88 6-22 (169)
418 1htw_A HI0065; nucleotide-bind 77.1 1.3 4.5E-05 32.8 2.4 20 68-87 31-50 (158)
419 1cke_A CK, MSSA, protein (cyti 77.1 1.5 5.1E-05 34.6 2.9 19 71-89 6-24 (227)
420 1pzn_A RAD51, DNA repair and r 77.0 1.5 5.1E-05 37.5 3.0 24 70-93 131-154 (349)
421 1g6h_A High-affinity branched- 77.0 1.1 3.8E-05 36.3 2.2 19 68-86 31-49 (257)
422 1jjv_A Dephospho-COA kinase; P 76.9 1.5 5E-05 34.1 2.8 18 72-89 4-21 (206)
423 3iwh_A Rhodanese-like domain p 76.9 2.1 7.2E-05 29.0 3.2 35 272-306 56-90 (103)
424 3bfn_A Kinesin-like protein KI 76.8 1.6 5.6E-05 37.7 3.2 33 56-88 75-117 (388)
425 1ji0_A ABC transporter; ATP bi 76.8 1.1 3.9E-05 35.9 2.2 19 68-86 30-48 (240)
426 1g8p_A Magnesium-chelatase 38 76.8 0.81 2.8E-05 39.0 1.3 19 70-88 45-63 (350)
427 3i32_A Heat resistant RNA depe 76.8 6.3 0.00022 32.7 6.7 74 101-184 28-105 (300)
428 2wbe_C Bipolar kinesin KRP-130 76.7 1.6 5.4E-05 37.6 3.1 25 65-89 94-120 (373)
429 4g1u_C Hemin import ATP-bindin 76.6 1.1 3.9E-05 36.5 2.1 19 68-86 35-53 (266)
430 3tqf_A HPR(Ser) kinase; transf 76.6 1.3 4.5E-05 33.4 2.2 24 69-92 15-38 (181)
431 4dzz_A Plasmid partitioning pr 76.6 7.5 0.00026 29.7 6.9 32 74-108 6-37 (206)
432 2if2_A Dephospho-COA kinase; a 76.6 1.1 3.8E-05 34.7 2.0 17 72-88 3-19 (204)
433 2vhj_A Ntpase P4, P4; non- hyd 76.4 1.4 4.7E-05 37.1 2.5 25 69-93 122-146 (331)
434 1g41_A Heat shock protein HSLU 76.4 7.3 0.00025 34.4 7.3 19 70-88 50-68 (444)
435 1b0u_A Histidine permease; ABC 76.4 1.2 4.1E-05 36.3 2.2 19 68-86 30-48 (262)
436 2heh_A KIF2C protein; kinesin, 76.3 1.8 6.3E-05 37.3 3.3 27 63-89 126-154 (387)
437 3pxg_A Negative regulator of g 76.2 2 6.9E-05 38.4 3.8 20 70-89 201-220 (468)
438 1tf5_A Preprotein translocase 76.1 7.4 0.00025 37.3 7.6 73 268-346 120-209 (844)
439 2fsf_A Preprotein translocase 76.1 7 0.00024 37.4 7.4 56 269-330 112-171 (853)
440 2owm_A Nckin3-434, related to 76.0 1.9 6.5E-05 38.0 3.5 24 65-88 130-155 (443)
441 2qi9_C Vitamin B12 import ATP- 75.9 1.2 4.3E-05 35.9 2.1 19 68-86 24-42 (249)
442 1vpl_A ABC transporter, ATP-bi 75.9 1.3 4.3E-05 36.0 2.2 18 69-86 40-57 (256)
443 3u06_A Protein claret segregat 75.8 1.9 6.3E-05 37.7 3.3 26 63-88 130-157 (412)
444 2xb4_A Adenylate kinase; ATP-b 75.8 1.6 5.5E-05 34.5 2.7 18 72-89 2-19 (223)
445 2ghi_A Transport protein; mult 75.8 1.5 5.1E-05 35.7 2.6 20 68-87 44-63 (260)
446 2ff7_A Alpha-hemolysin translo 75.8 1.5 5E-05 35.4 2.5 20 68-87 33-52 (247)
447 3cob_A Kinesin heavy chain-lik 75.7 1.6 5.3E-05 37.6 2.8 26 63-88 71-98 (369)
448 2olj_A Amino acid ABC transpor 75.7 1.3 4.4E-05 36.1 2.2 18 69-86 49-66 (263)
449 1ko7_A HPR kinase/phosphatase; 75.6 5.3 0.00018 33.4 5.9 53 39-91 91-165 (314)
450 2rep_A Kinesin-like protein KI 75.6 2 6.8E-05 37.0 3.4 26 63-88 107-134 (376)
451 1mv5_A LMRA, multidrug resista 75.6 1.1 3.7E-05 36.1 1.7 19 68-86 26-44 (243)
452 1np6_A Molybdopterin-guanine d 75.4 3.3 0.00011 31.2 4.3 18 71-88 7-24 (174)
453 2p5t_B PEZT; postsegregational 75.3 0.85 2.9E-05 36.9 1.0 19 70-88 32-50 (253)
454 3k1j_A LON protease, ATP-depen 75.3 2.4 8.1E-05 39.3 4.1 24 65-88 55-78 (604)
455 2ixe_A Antigen peptide transpo 75.2 1.4 4.7E-05 36.2 2.2 19 68-86 43-61 (271)
456 2yz2_A Putative ABC transporte 75.2 1.4 4.7E-05 36.1 2.2 19 68-86 31-49 (266)
457 2nq2_C Hypothetical ABC transp 75.2 1.3 4.5E-05 35.9 2.1 19 68-86 29-47 (253)
458 3f9v_A Minichromosome maintena 75.0 1.8 6.1E-05 40.0 3.2 14 72-85 329-342 (595)
459 2z0m_A 337AA long hypothetical 74.9 24 0.00084 29.2 10.2 70 272-346 56-135 (337)
460 2ipc_A Preprotein translocase 74.7 11 0.00037 36.5 8.3 58 267-330 115-176 (997)
461 1wv9_A Rhodanese homolog TT165 74.7 2.2 7.7E-05 28.2 2.9 35 273-307 54-88 (94)
462 4e22_A Cytidylate kinase; P-lo 74.5 2 6.7E-05 34.7 3.0 20 69-88 26-45 (252)
463 2zu0_C Probable ATP-dependent 74.5 1.8 6.1E-05 35.4 2.8 20 68-87 44-63 (267)
464 2ce7_A Cell division protein F 74.5 1.4 4.7E-05 39.4 2.2 52 31-87 11-66 (476)
465 2d2e_A SUFC protein; ABC-ATPas 74.4 1.8 6.2E-05 34.9 2.7 21 68-88 27-47 (250)
466 3p32_A Probable GTPase RV1496/ 73.8 40 0.0014 28.5 11.7 22 72-93 81-102 (355)
467 3qf7_A RAD50; ABC-ATPase, ATPa 73.8 2.2 7.4E-05 36.7 3.2 17 72-88 25-41 (365)
468 2og2_A Putative signal recogni 73.7 2.8 9.5E-05 35.9 3.8 21 70-90 157-177 (359)
469 2v3c_C SRP54, signal recogniti 73.5 2.2 7.4E-05 37.7 3.2 35 71-108 100-134 (432)
470 1ry6_A Internal kinesin; kines 73.5 2.2 7.6E-05 36.5 3.1 20 70-89 83-104 (360)
471 1nkt_A Preprotein translocase 73.2 10 0.00034 36.6 7.6 58 267-330 147-208 (922)
472 1j8m_F SRP54, signal recogniti 73.1 2.7 9.4E-05 34.9 3.6 24 71-94 99-122 (297)
473 2jtq_A Phage shock protein E; 73.0 6.7 0.00023 25.1 4.9 36 270-306 39-75 (85)
474 3kta_A Chromosome segregation 72.9 2.1 7.1E-05 32.3 2.7 17 72-88 28-44 (182)
475 2ihy_A ABC transporter, ATP-bi 72.8 1.9 6.4E-05 35.5 2.5 19 68-86 45-63 (279)
476 1yks_A Genome polyprotein [con 72.5 9.3 0.00032 33.7 7.1 68 101-180 177-245 (440)
477 1svm_A Large T antigen; AAA+ f 72.3 2.3 7.8E-05 36.7 3.0 20 69-88 168-187 (377)
478 3nh6_A ATP-binding cassette SU 72.2 1.4 4.7E-05 36.9 1.5 19 69-87 79-97 (306)
479 1uf9_A TT1252 protein; P-loop, 72.2 2.1 7.2E-05 32.9 2.6 17 72-88 10-26 (203)
480 1vht_A Dephospho-COA kinase; s 72.1 1.8 6.2E-05 33.9 2.2 18 71-88 5-22 (218)
481 3l0o_A Transcription terminati 72.0 2.6 8.8E-05 36.5 3.2 28 60-87 162-192 (427)
482 3hix_A ALR3790 protein; rhodan 71.8 3.1 0.0001 28.3 3.0 36 271-306 51-87 (106)
483 2bbs_A Cystic fibrosis transme 71.5 1.8 6E-05 35.9 2.0 26 174-199 176-201 (290)
484 2grj_A Dephospho-COA kinase; T 71.2 2.5 8.7E-05 32.5 2.8 18 72-89 14-31 (192)
485 4eaq_A DTMP kinase, thymidylat 71.2 2.2 7.7E-05 33.8 2.5 21 69-89 25-45 (229)
486 3m6a_A ATP-dependent protease 71.2 2.4 8.1E-05 38.7 3.0 20 69-88 107-126 (543)
487 2ykg_A Probable ATP-dependent 71.1 9.4 0.00032 35.9 7.2 70 273-346 62-142 (696)
488 2jeo_A Uridine-cytidine kinase 71.0 2.2 7.4E-05 34.2 2.4 20 69-88 24-43 (245)
489 1tf7_A KAIC; homohexamer, hexa 70.9 3.6 0.00012 37.4 4.1 51 67-121 278-328 (525)
490 1ltq_A Polynucleotide kinase; 70.9 1.9 6.6E-05 35.7 2.2 17 72-88 4-20 (301)
491 2xxa_A Signal recognition part 70.8 3.8 0.00013 36.1 4.1 35 72-108 102-136 (433)
492 3fht_A ATP-dependent RNA helic 70.8 19 0.00063 31.0 8.7 71 102-182 267-341 (412)
493 2oca_A DAR protein, ATP-depend 70.7 9.6 0.00033 34.2 7.0 67 272-345 157-230 (510)
494 4anj_A Unconventional myosin-V 70.4 4.2 0.00014 40.1 4.6 61 31-91 96-165 (1052)
495 2fz4_A DNA repair protein RAD2 70.2 23 0.00079 28.0 8.4 54 252-306 114-168 (237)
496 1rz3_A Hypothetical protein rb 70.0 2.3 7.9E-05 32.9 2.3 19 70-88 22-40 (201)
497 2k0z_A Uncharacterized protein 69.9 5.4 0.00019 27.2 4.0 37 270-306 54-90 (110)
498 3auy_A DNA double-strand break 69.6 2 6.7E-05 37.1 2.0 15 73-87 28-42 (371)
499 3qks_A DNA double-strand break 69.6 2.3 7.7E-05 33.1 2.2 17 71-87 24-40 (203)
500 2yhs_A FTSY, cell division pro 69.4 3.7 0.00013 36.8 3.7 21 70-90 293-313 (503)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-55 Score=394.56 Aligned_cols=330 Identities=28% Similarity=0.440 Sum_probs=299.1
Q ss_pred eeecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC--
Q 018574 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-- 99 (354)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~-- 99 (354)
.......+.+..+|+++++++.+.+++++.||..|+++|.++++.+++|+++++.+|||+|||.+|++|++..+....
T Consensus 45 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~ 124 (434)
T 2db3_A 45 KVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE 124 (434)
T ss_dssp EEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC
T ss_pred EecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc
Confidence 344455667889999999999999999999999999999999999999999999999999999999999998875432
Q ss_pred ---CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCc
Q 018574 100 ---REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (354)
Q Consensus 100 ---~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 176 (354)
.++++||++|+++|+.|+.+.++++....++++..+.|+.....+...+..+++|+|+||++|.+.+......+.++
T Consensus 125 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 125 LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 35689999999999999999999999888889999999998888877788889999999999999998888888999
Q ss_pred cEEEEecchhhhccCcHHHHHHHHhhC--CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEec
Q 018574 177 KLLVLDESDEMLSRGFKDQIYDVYRYL--PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254 (354)
Q Consensus 177 ~~vvvDE~h~~~~~~~~~~~~~i~~~~--~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (354)
++||+||||++.+.+|...+..++..+ +.+.|++++|||++.....+...++.++..+...........+.+.+..+.
T Consensus 205 ~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~ 284 (434)
T 2db3_A 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN 284 (434)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECC
T ss_pred CeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeC
Confidence 999999999999999999999999875 578899999999999999999999999888887766666677777777776
Q ss_pred cccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Q 018574 255 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334 (354)
Q Consensus 255 ~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 334 (354)
... +...+..++..... ++||||++++.++.+++.|++.++.+..+||++++.+|.++++.|++|+.+|||||+++++
T Consensus 285 ~~~-k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~r 362 (434)
T 2db3_A 285 KYA-KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASR 362 (434)
T ss_dssp GGG-HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTS
T ss_pred cHH-HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhC
Confidence 655 88888888887764 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCcEEEecCCCCCC
Q 018574 335 GLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 335 Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+|+|++++||+||+|.|+
T Consensus 363 GlDi~~v~~VI~~d~p~~~ 381 (434)
T 2db3_A 363 GLDIKNIKHVINYDMPSKI 381 (434)
T ss_dssp SCCCTTCCEEEESSCCSSH
T ss_pred CCCcccCCEEEEECCCCCH
Confidence 9999999999999999875
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.5e-55 Score=391.77 Aligned_cols=335 Identities=75% Similarity=1.164 Sum_probs=307.0
Q ss_pred CcceeecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC
Q 018574 19 DKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (354)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~ 98 (354)
.....+....++...+|+++++++.+.+.+.++||..|+++|.++++.+++++++++.+|||+|||.+++++++..+...
T Consensus 23 ~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~ 102 (410)
T 2j0s_A 23 TKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ 102 (410)
T ss_dssp SSCCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT
T ss_pred cccccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc
Confidence 33444455566778899999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccE
Q 018574 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (354)
Q Consensus 99 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 178 (354)
..+.++||++|+++|+.|+.+.+.+++...++.+..+.++.....+...+..+++|+|+||+.+.+.+....+...++++
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKM 182 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCE
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeE
Confidence 56778999999999999999999999988899999999999888877777778999999999999999888788889999
Q ss_pred EEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccc
Q 018574 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW 258 (354)
Q Consensus 179 vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (354)
||+||+|++.+.++...+..++..++++.|++++|||++.........++.++..+...........+.+.+........
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW 262 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh
Confidence 99999999999999999999999999999999999999998888888888888877776666777788888888888777
Q ss_pred hHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCc
Q 018574 259 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338 (354)
Q Consensus 259 ~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 338 (354)
+...+..++.....+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+
T Consensus 263 k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 263 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 89999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCCC
Q 018574 339 QQAILFFFLFLFCNV 353 (354)
Q Consensus 339 ~~~~~Vi~~~~p~s~ 353 (354)
|++++||++|+|+|+
T Consensus 343 ~~v~~Vi~~~~p~s~ 357 (410)
T 2j0s_A 343 PQVSLIINYDLPNNR 357 (410)
T ss_dssp TTEEEEEESSCCSSH
T ss_pred ccCCEEEEECCCCCH
Confidence 999999999999874
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-52 Score=377.84 Aligned_cols=330 Identities=31% Similarity=0.468 Sum_probs=291.2
Q ss_pred eecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC---
Q 018574 23 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS--- 99 (354)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~--- 99 (354)
......+....+|+++++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++|++|++..+....
T Consensus 5 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~ 84 (417)
T 2i4i_A 5 ATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE 84 (417)
T ss_dssp EESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCH
T ss_pred cCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccc
Confidence 34455667788999999999999999999999999999999999999999999999999999999999988764322
Q ss_pred ---------------CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHH
Q 018574 100 ---------------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD 164 (354)
Q Consensus 100 ---------------~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~ 164 (354)
.++++||++|+++|+.|+++.++++....++.+..+.|+.........+..+++|+|+||+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 85 ALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD 164 (417)
T ss_dssp HHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred hhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHH
Confidence 22579999999999999999999998888899999999998888877888889999999999999
Q ss_pred HHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhC--CC--CCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCc
Q 018574 165 MIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE 240 (354)
Q Consensus 165 ~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~--~~--~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (354)
.+....+.+.++++||+||+|++.+.++...+..++... +. ..|++++|||++.........++..+..+......
T Consensus 165 ~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (417)
T 2i4i_A 165 MMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG 244 (417)
T ss_dssp HHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred HHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 998888888899999999999999999999999998853 32 57899999999999888888888888877766665
Q ss_pred ccccCceeEEEEeccccchHHHHHHHHhhC-CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHh
Q 018574 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFR 319 (354)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 319 (354)
.....+.+.+..+.... +...+..+++.. ..+++||||++++.++.+++.|++.++.+..+||+++.++|.++++.|+
T Consensus 245 ~~~~~i~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (417)
T 2i4i_A 245 STSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 323 (417)
T ss_dssp -CCSSEEEEEEECCGGG-HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCccCceEEEEEeccHh-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHH
Confidence 66667777777666554 788888888876 4678999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 320 SGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 320 ~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+|+.+|||||+++++|+|+|++++||++|+|.|+
T Consensus 324 ~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~ 357 (417)
T 2i4i_A 324 SGKSPILVATAVAARGLDISNVKHVINFDLPSDI 357 (417)
T ss_dssp HTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSH
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEEcCCCCH
Confidence 9999999999999999999999999999999874
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=8.3e-53 Score=378.22 Aligned_cols=326 Identities=62% Similarity=1.002 Sum_probs=294.8
Q ss_pred CcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
..+...+|+++++++.+.+.++++|+..|+++|.++++.+++++++++.+|||+|||.+++++++..+.....+.+++|+
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 114 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL 114 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE
Confidence 34556889999999999999999999999999999999999999999999999999999999999988776667789999
Q ss_pred cCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc-CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
+|+++|+.|+.+.+..++...+..+..+.++.........+. .+++|+|+||+++.+.+....+...++++||+||||+
T Consensus 115 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 115 APTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp CSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred eChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 999999999999999999888889999999888777766665 6689999999999999988888888899999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHH
Q 018574 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (354)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (354)
+.+.++...+..++..++++.|++++|||++.........++.++..+...........+.+.+........+...+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL 274 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887777777888888888888888899999999
Q ss_pred HhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 267 YDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 267 l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
+.....+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 275 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~ 354 (414)
T 3eiq_A 275 YETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 354 (414)
T ss_dssp HHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE
T ss_pred HHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 018574 347 LFLFCNV 353 (354)
Q Consensus 347 ~~~p~s~ 353 (354)
+|.|.|+
T Consensus 355 ~~~p~s~ 361 (414)
T 3eiq_A 355 YDLPTNR 361 (414)
T ss_dssp SSCCSST
T ss_pred eCCCCCH
Confidence 9999885
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.4e-51 Score=367.05 Aligned_cols=322 Identities=38% Similarity=0.646 Sum_probs=287.3
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
....+|+++++++.+.+.+.+.||..|+++|.++++.+++++++++.+|||+|||.+++++++..+.....+.+++|++|
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 34578999999999999999999999999999999999999999999999999999999999988876656678999999
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
+++|+.|+.+.++.+....++.+..+.++.....+.......++|+|+||+.+.+.+......+.++++||+||+|++.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS 177 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh
Confidence 99999999999999998888999999999888777777777899999999999998887777788999999999999988
Q ss_pred cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh
Q 018574 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (354)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (354)
.++...+..+...+++..|++++|||++..........+..+..+.... ......+.+.+....... +...+..++..
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~~~~ 255 (400)
T 1s2m_A 178 RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEERQ-KLHCLNTLFSK 255 (400)
T ss_dssp HHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGGG-HHHHHHHHHHH
T ss_pred hchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechhh-HHHHHHHHHhh
Confidence 8888999999999988999999999999998888888888776554332 244455666666555444 88888899988
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
...+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|+
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 018574 350 FCNV 353 (354)
Q Consensus 350 p~s~ 353 (354)
|+|+
T Consensus 336 p~s~ 339 (400)
T 1s2m_A 336 PKTA 339 (400)
T ss_dssp CSSH
T ss_pred CCCH
Confidence 9874
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1e-50 Score=361.92 Aligned_cols=320 Identities=34% Similarity=0.577 Sum_probs=283.7
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
.+|+++++++.+.+.+.++|+..|+++|.++++.+++++++++.+|||+|||.+++++++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999988876666678999999999
Q ss_pred HHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
|+.|+.+.+.++.... ++++..+.|+.........+.. .++|+|+||+++...+......+.++++||+||||++.+.
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987665 7888889988876666555543 4799999999999988887778889999999999999874
Q ss_pred -CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCc-ccccCceeEEEEeccccchHHHHHHHHh
Q 018574 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (354)
Q Consensus 191 -~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 268 (354)
++...+..++...+...|++++|||+++........++..+..+...... .....+.+.+....... +...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGG-HHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchh-HHHHHHHHHH
Confidence 67888888998888899999999999999888888888888777655443 23445566666555444 8888889998
Q ss_pred hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
....+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 018574 349 LFCNV 353 (354)
Q Consensus 349 ~p~s~ 353 (354)
+|+|+
T Consensus 327 ~p~s~ 331 (391)
T 1xti_A 327 MPEDS 331 (391)
T ss_dssp CCSSH
T ss_pred CCCCH
Confidence 99875
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.4e-50 Score=361.47 Aligned_cols=316 Identities=38% Similarity=0.634 Sum_probs=287.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
..+|+++++++.+.+.+.+.|+..|+++|.++++.++++ +++++.+|||+|||.+++++++..+.....+.++||++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 478999999999999999999999999999999999998 899999999999999999999998877666778999999
Q ss_pred CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
+++|+.|+.+.+.+++...++.+....++...... ..+++|+|+||+.+...+......+.++++||+||||++.+
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 99999999999999988888888777766543321 23589999999999999888878888999999999999987
Q ss_pred -cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh
Q 018574 190 -RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (354)
Q Consensus 190 -~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 268 (354)
.++...+..+...++.+.|++++|||+++........+...+..+...........+.+.+........+...+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (395)
T 3pey_A 160 QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYG 239 (395)
T ss_dssp STTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHH
Confidence 5788889999999999999999999999999999999888888777777777777788888887777778899999999
Q ss_pred hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
....+++||||+++++++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 240 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 319 (395)
T 3pey_A 240 LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD 319 (395)
T ss_dssp TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESS
T ss_pred hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018574 349 LFC 351 (354)
Q Consensus 349 ~p~ 351 (354)
+|+
T Consensus 320 ~p~ 322 (395)
T 3pey_A 320 LPT 322 (395)
T ss_dssp CCB
T ss_pred CCC
Confidence 997
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.3e-50 Score=363.63 Aligned_cols=323 Identities=37% Similarity=0.632 Sum_probs=288.6
Q ss_pred cCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeE
Q 018574 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (354)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~ 104 (354)
.......+|+++++++.+.+.+.+.|+..|+++|.++++.++++ +++++.+|||+|||.+|+++++..+.....++++
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQC 98 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCE
Confidence 34456789999999999999999999999999999999999987 8999999999999999999999988877777789
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEe
Q 018574 105 LILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLD 182 (354)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvD 182 (354)
||++|+++|+.|+.+.+.++.... ++.+....++...... ...+++|+|+||+++.+.+.. ..+.+.++++||+|
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 999999999999999999987654 5677777766554332 234579999999999988855 55666889999999
Q ss_pred cchhhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHH
Q 018574 183 ESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 261 (354)
Q Consensus 183 E~h~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (354)
|||++.+ .++...+..+...++.+.|++++|||+++........++.++..+...........+.+.+........+..
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQ 255 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHH
Confidence 9999987 678888999999999999999999999999999999999998887777777777788888888877777899
Q ss_pred HHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCC
Q 018574 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341 (354)
Q Consensus 262 ~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 341 (354)
.+..++.....+++||||+++++++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++
T Consensus 256 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 256 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCC
Q 018574 342 ILFFFLFLFCN 352 (354)
Q Consensus 342 ~~Vi~~~~p~s 352 (354)
++||++|+|.+
T Consensus 336 ~~Vi~~~~p~~ 346 (412)
T 3fht_A 336 SVVINFDLPVD 346 (412)
T ss_dssp EEEEESSCCBC
T ss_pred CEEEEECCCCC
Confidence 99999999965
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.6e-52 Score=370.01 Aligned_cols=324 Identities=57% Similarity=0.934 Sum_probs=189.5
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
.+...+|+++++++.+.+.+..+|+..|+++|.++++.+++++++++.+|||+|||++++++++..+.....++++||++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 44567899999999999999999999999999999999999999999999999999999999999887766677899999
Q ss_pred CCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh
Q 018574 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (354)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~ 188 (354)
|+++|+.|+.+.+.++....++.+..+.|+.........+. +++|+|+||+.+...+....+...++++||+||+|++.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 99999999999999998888899999999887665554443 58999999999999888877778899999999999999
Q ss_pred ccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh
Q 018574 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (354)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 268 (354)
+.++...+..++..+++..|++++|||+++........++..+..+...........+.+.+........+...+..++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYD 255 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHh
Confidence 88899999999999999999999999999998888888899888888777766667777777766666667778888888
Q ss_pred hCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 269 TLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
....+++||||++++.++.+++.|++.++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 018574 349 LFCNV 353 (354)
Q Consensus 349 ~p~s~ 353 (354)
.|.|+
T Consensus 336 ~p~s~ 340 (394)
T 1fuu_A 336 LPANK 340 (394)
T ss_dssp -----
T ss_pred CCCCH
Confidence 99885
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.4e-49 Score=346.32 Aligned_cols=314 Identities=34% Similarity=0.589 Sum_probs=275.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC-CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
..+|+++++++.+.+.+++.|+..|+++|.++++.++++ +++++.+|||+|||.+++.+++..+... .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 467999999999999999999999999999999999988 6999999999999999999988876543 45679999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
++|+.|+.+.+..+....++.+..+.++.........+. .++|+|+||+.+.+.+......+.++++||+||+|++.+.
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999998777888888888887766655544 5899999999999998887777889999999999999999
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 270 (354)
++...+..++..++++.+++++|||++.........++.++..+..... ..+.+.+....... +...+.+++. .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~l~~~l~-~ 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENE-RFEALCRLLK-N 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCGGG-HHHHHHHHHC-S
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeChHH-HHHHHHHHHh-c
Confidence 9999999999999899999999999999988888888776654443222 24555555554444 7888888887 4
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
..+++||||++++.++.+++.|++.+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|.|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~ 316 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLP 316 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 018574 351 CNV 353 (354)
Q Consensus 351 ~s~ 353 (354)
+|+
T Consensus 317 ~s~ 319 (367)
T 1hv8_A 317 QNP 319 (367)
T ss_dssp SCH
T ss_pred CCH
Confidence 874
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4e-50 Score=366.69 Aligned_cols=320 Identities=38% Similarity=0.638 Sum_probs=177.9
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
....+|.++++++.+.+.+.++||..|+++|.++++.++++ +++++.+|||+|||.+|+++++..+.....++++||+
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34678999999999999999999999999999999999987 8999999999999999999999998877777789999
Q ss_pred cCCHHHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecch
Q 018574 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESD 185 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~h 185 (354)
+|+++|+.|+.+.++.+.... ++.+....++...... ....++|+|+||+++.+.+.. ..+.+.++++||+||+|
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 999999999999999887653 5666666666544322 233578999999999988865 45666899999999999
Q ss_pred hhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHH
Q 018574 186 EMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (354)
Q Consensus 186 ~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 264 (354)
++.+ .++...+..+.+.++.+.|++++|||++.....+...++.++..+...........+.+.+..+.....+...+.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHH
Confidence 9986 578888889999999999999999999999999999999998888887777777778888887777666888888
Q ss_pred HHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEE
Q 018574 265 DLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILF 344 (354)
Q Consensus 265 ~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~V 344 (354)
.++.....+++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 326 ~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~V 405 (479)
T 3fmp_B 326 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 405 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEE
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 018574 345 FFLFLFCN 352 (354)
Q Consensus 345 i~~~~p~s 352 (354)
|+||+|.+
T Consensus 406 I~~d~p~~ 413 (479)
T 3fmp_B 406 INFDLPVD 413 (479)
T ss_dssp --------
T ss_pred EEecCCCC
Confidence 99999964
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.1e-48 Score=358.49 Aligned_cols=324 Identities=25% Similarity=0.407 Sum_probs=263.9
Q ss_pred ccccCcccCC----CCHHHHHHHHHCCCCCChHHHHHhHhhhh--cCCcEEEEcCCCCchhhHhHHHHhhccccCC----
Q 018574 30 EAITSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---- 99 (354)
Q Consensus 30 ~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---- 99 (354)
....+|+++. +++++.+.++.+||..|+++|.++++.++ .++++++.+|||+|||++|++|++..+....
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 3344555543 99999999999999999999999999999 6789999999999999999999998876542
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhcc----CcCeEEEEEeCCcchHHhHHhhc-CCCeEEEeCcHHHHHHHhcC-CccC
Q 018574 100 REVQALILSPTRELATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK-TLRT 173 (354)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~-~~~~ 173 (354)
.++++||++|+++|+.|+.+.+.++.. .....+..+.++.........+. .+++|+|+||+++...+... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 345799999999999999999998752 23466777888887776666553 36899999999998877653 4456
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCC-------CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCc----cc
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE----LT 242 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~-------~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 242 (354)
..+++||+||||++.+++|...+..++..++ ...|++++|||+++........++..+..+...... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 7899999999999999999988888877653 367999999999999999888888887766554322 22
Q ss_pred ccCceeEEEEeccccch----HHHHHHHHhh-CCCCcEEEEcCchhhHHHHHHHHhcC---CCeEEEeecCCCHHHHHHH
Q 018574 243 LEGIKQFFVAVEREEWK----FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMPQKERDAI 314 (354)
Q Consensus 243 ~~~~~~~~~~~~~~~~~----~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~ 314 (354)
...+.+.+......... ...+...+.. ....++||||++++.++.+++.|++. ++.+..+||++++.+|.++
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 33445555544433222 2233333333 45679999999999999999999876 8899999999999999999
Q ss_pred HHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 315 MGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 315 ~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
++.|++|+.+|||||+++++|+|+|++++||++|+|.|+
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~ 372 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSEL 372 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSST
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCH
Confidence 999999999999999999999999999999999999986
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-46 Score=327.37 Aligned_cols=297 Identities=25% Similarity=0.447 Sum_probs=257.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (354)
+++.+.+.++++|+..|+++|.++++.+++++++++.+|||+|||.+++.+++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998764 4569999999999999999
Q ss_pred HHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHH
Q 018574 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (354)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i 199 (354)
.++++....+..+..+.++.........+. .++|+|+||+.+.+.+........++++||+||+|++.+.++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888888988998887766655554 4899999999999988877777788999999999999999999999999
Q ss_pred HhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEc
Q 018574 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 279 (354)
Q Consensus 200 ~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~ 279 (354)
+...+...+++++|||++.........++..+..+... .....+.+.+....... ......+....++++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99999899999999999999888888888877655322 33444555555544432 2223556666778999999
Q ss_pred CchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 280 NTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 280 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+++++++.+++.|+ .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|.|+|+
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999887 48899999999999999999999999999999999999999999999999999874
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=8.6e-47 Score=351.49 Aligned_cols=314 Identities=25% Similarity=0.416 Sum_probs=257.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHhhhh--cCCcEEEEcCCCCchhhHhHHHHhhccccCC----CceeEEEEcCCHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTREL 113 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~l 113 (354)
+++.+.+.+..+||..|+++|.++++.++ .++++++.+|||+|||++|++|++..+.... .+.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999998886543 23579999999999
Q ss_pred HHHHHHHHHHhcc----CcCeEEEEEeCCcchHHhHHhh-cCCCeEEEeCcHHHHHHHhcC-CccCCCccEEEEecchhh
Q 018574 114 ATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEM 187 (354)
Q Consensus 114 ~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vvvDE~h~~ 187 (354)
+.|+.+.+.++.. .....+..+.++.........+ ..+++|+|+||+++...+... ...+..+++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 9999999998643 2245677788887776666555 346899999999998877653 335678999999999999
Q ss_pred hccCcHHHHHHHHhhCC-------CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcc----cccCceeEEEEeccc
Q 018574 188 LSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL----TLEGIKQFFVAVERE 256 (354)
Q Consensus 188 ~~~~~~~~~~~i~~~~~-------~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 256 (354)
.+++|...+..+...++ .+.|++++|||+++.+......++..+..+....... ....+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999888888876652 3678999999999998888888888876665543222 233445555554443
Q ss_pred cchH----HHHHHHHhh-CCCCcEEEEcCchhhHHHHHHHHhcC---CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEE
Q 018574 257 EWKF----DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (354)
Q Consensus 257 ~~~~----~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 328 (354)
.... ..+...+.. ...+++||||++++.++.+++.|++. ++.+..+||++++.+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 3222 222333332 45679999999999999999999876 889999999999999999999999999999999
Q ss_pred ccccccCCCcCCCcEEEecCCCCCC
Q 018574 329 TDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+++++|+|+|++++||++|+|.|+
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~ 423 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSEL 423 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSST
T ss_pred cchhhcCCCcccCCEEEEECCCCch
Confidence 9999999999999999999999986
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-48 Score=353.85 Aligned_cols=319 Identities=34% Similarity=0.550 Sum_probs=238.2
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEE
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 106 (354)
+.....|...++++.+.+.+.+.|+..|+++|.++++.++++ +++++.+|||+|||.+|+++++..+.....+.++||
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLv 194 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAIC 194 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEE
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEE
Confidence 344455667788999999999999999999999999999998 999999999999999999999999887776778999
Q ss_pred EcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
++|+++|+.|+.+.+.+++...++......++..... ...+++|+|+||+.+...+....+.+.++++||+||||+
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 9999999999999999998776666655554433222 233689999999999998888888888999999999999
Q ss_pred hhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHH
Q 018574 187 MLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (354)
Q Consensus 187 ~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 265 (354)
+.+ .++...+..+...++.+.|++++|||+++........+...+..+...........+.+.+........+...+..
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 350 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE 350 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHH
Confidence 987 5788999999999999999999999999999999999998888777777766777778888877777778888999
Q ss_pred HHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEE
Q 018574 266 LYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFF 345 (354)
Q Consensus 266 ~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi 345 (354)
++.....+++||||+++++++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 351 ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 351 LYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp HHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred HHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 018574 346 FLFLFC 351 (354)
Q Consensus 346 ~~~~p~ 351 (354)
++|+|.
T Consensus 431 ~~~~p~ 436 (508)
T 3fho_A 431 NYDMPL 436 (508)
T ss_dssp C----C
T ss_pred EECCCC
Confidence 999993
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.3e-45 Score=338.09 Aligned_cols=314 Identities=12% Similarity=0.213 Sum_probs=246.2
Q ss_pred cccccCcc--cCCCCHHHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEE
Q 018574 29 VEAITSFD--AMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (354)
Q Consensus 29 ~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~l 105 (354)
+.....|. ++++++.+.+.+++ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++.. ...+|
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~l 88 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTL 88 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEE
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEE
Confidence 34445565 47899999999998 79999999999999999999999999999999999999998753 34699
Q ss_pred EEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---h---hcCCCeEEEeCcHHHHH---HHh--cCCccCC
Q 018574 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---K---LEHGVHVVSGTPGRVCD---MIK--RKTLRTR 174 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~iiv~T~~~l~~---~~~--~~~~~~~ 174 (354)
|++|+++|+.|+.+.+..+ ++.+..+.++....+... . ....++|+|+||+++.. ++. .......
T Consensus 89 VisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~ 164 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEAR 164 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTT
T ss_pred EEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhcc
Confidence 9999999999999999887 477778887766544322 1 23568999999998742 221 1233456
Q ss_pred CccEEEEecchhhhccC--cHHHHHH--HHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEE
Q 018574 175 AIKLLVLDESDEMLSRG--FKDQIYD--VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF 250 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~--~~~~~~~--i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (354)
++++||+||||++..++ |...+.. .+....++.+++++|||+++.....+..++..+....... ....+++...+
T Consensus 165 ~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v 243 (591)
T 2v1x_A 165 RFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEV 243 (591)
T ss_dssp CEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEE
T ss_pred CCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEE
Confidence 88999999999998765 5444433 2333345789999999999988777777766554333332 23344443333
Q ss_pred EEecc-ccchHHHHHHHHhh-CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEE
Q 018574 251 VAVER-EEWKFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT 328 (354)
Q Consensus 251 ~~~~~-~~~~~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 328 (354)
..... .......+.+++.. ..++++||||++++.++.+++.|++.++.+..+||++++.+|.++++.|++|+.+||||
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVA 323 (591)
T 2v1x_A 244 RQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVA 323 (591)
T ss_dssp EECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred EeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 32221 12245666666654 35679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcCCCcEEEecCCCCCC
Q 018574 329 TDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 329 T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+++++|+|+|++++|||+|+|.|+
T Consensus 324 T~a~~~GID~p~V~~VI~~~~p~s~ 348 (591)
T 2v1x_A 324 TVAFGMGIDKPDVRFVIHHSMSKSM 348 (591)
T ss_dssp CTTSCTTCCCSCEEEEEESSCCSSH
T ss_pred echhhcCCCcccccEEEEeCCCCCH
Confidence 9999999999999999999999985
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.1e-44 Score=331.65 Aligned_cols=304 Identities=14% Similarity=0.275 Sum_probs=242.9
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
.+|+++++++.+.+.+++ +|+..|+++|.++++.+++|+++++.+|||+|||++|.+|++.. +..+||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 579999999999999999 89999999999999999999999999999999999999998744 23589999999
Q ss_pred HHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hh-cCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh
Q 018574 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~ 187 (354)
+|+.|+.+.+..++ +.+..+.++....+... .+ ...++|+++||+++........+...++++||+||+|++
T Consensus 76 aL~~q~~~~l~~~g----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 99999999998764 67777777665443321 22 345899999999985322222233468899999999999
Q ss_pred hccC--cHHHHH---HHHhhCCCCCcEEEEEeeCchhHHHHHHhcc--CCCeEEEecCCcccccCceeEEEEeccccchH
Q 018574 188 LSRG--FKDQIY---DVYRYLPPDLQVVLISATLPHEILEMTTKFM--TDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (354)
Q Consensus 188 ~~~~--~~~~~~---~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (354)
.+++ |...+. .+...+ ++.+++++|||+++.....+...+ .++..+. . ....+++. +..... ..+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~~l~--~~v~~~-~~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S--SFDRPNIR--YMLMEK-FKPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-C--CCCCTTEE--EEEEEC-SSHH
T ss_pred CcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-C--CCCCCceE--EEEEeC-CCHH
Confidence 8765 544443 344444 468899999999987665444433 2333222 2 12233333 222223 3377
Q ss_pred HHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCC
Q 018574 261 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQ 340 (354)
Q Consensus 261 ~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~ 340 (354)
..+..++....++++||||++++.++.+++.|++.++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 78888888877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCC
Q 018574 341 AILFFFLFLFCNV 353 (354)
Q Consensus 341 ~~~Vi~~~~p~s~ 353 (354)
+++|||+|+|.|+
T Consensus 305 v~~VI~~~~p~s~ 317 (523)
T 1oyw_A 305 VRFVVHFDIPRNI 317 (523)
T ss_dssp CCEEEESSCCSSH
T ss_pred ccEEEEECCCCCH
Confidence 9999999999985
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.1e-43 Score=316.56 Aligned_cols=289 Identities=19% Similarity=0.261 Sum_probs=227.4
Q ss_pred HHHHHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 43 ~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
++.+.+++ +++ +|+++|.++++.+++++++++.+|||+|||.+++++++... ..++++||++|+++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHH
Confidence 44555655 466 89999999999999999999999999999999998888766 33467999999999999999999
Q ss_pred HHhccCcCeEEEEEeCCcch---HHhHHhhcCC-CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc--------
Q 018574 122 LAIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-------- 189 (354)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~-------- 189 (354)
+.++. .++++..++|+.+. ......+..+ ++|+|+||+.+.+.+.. +...++++||+||||++..
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 99887 78899999999887 4445555555 89999999999877664 5567899999999998753
Q ss_pred ---cCcHHH-HHHHHhhCC-----------CCCcEEEEEee-CchhHH-HHHHhccCCCeEEEecCCcccccCceeEEEE
Q 018574 190 ---RGFKDQ-IYDVYRYLP-----------PDLQVVLISAT-LPHEIL-EMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (354)
Q Consensus 190 ---~~~~~~-~~~i~~~~~-----------~~~~~i~lSaT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (354)
.+|... +..++..++ .+.|++++||| .+.... .....+.. +...........+.+.+..
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 237 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEES
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeec
Confidence 455555 677777665 78899999999 444332 22222222 1112222334455555544
Q ss_pred eccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEE-EeecCCCHHHHHHHHHHHhCCCCcEEEE---
Q 018574 253 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS-SMHGDMPQKERDAIMGEFRSGTTRVLIT--- 328 (354)
Q Consensus 253 ~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~--- 328 (354)
. .+...+..+++. .++++||||++++.++.++..|++.++.+. .+||. +|. ++.|++|+.+||||
T Consensus 238 ~----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s 306 (414)
T 3oiy_A 238 S----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQA 306 (414)
T ss_dssp S----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECC
T ss_pred c----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecC
Confidence 4 255666777766 348999999999999999999999999998 88884 344 99999999999999
Q ss_pred -ccccccCCCcCC-CcEEEecCCC--CCC
Q 018574 329 -TDVWARGLDVQQ-AILFFFLFLF--CNV 353 (354)
Q Consensus 329 -T~~~~~Gidi~~-~~~Vi~~~~p--~s~ 353 (354)
|+++++|+|+|+ +++||+||+| .|+
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~ 335 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDV 335 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCH
T ss_pred cCchhhccCccccccCEEEEECCCCCCCH
Confidence 999999999999 9999999999 663
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.2e-42 Score=320.81 Aligned_cols=301 Identities=17% Similarity=0.215 Sum_probs=184.3
Q ss_pred CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC--ceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
..+|+++|.++++.+++++++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+.+.++....++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 348999999999999999999999999999999999999988765432 567999999999999999999999887789
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc-cCCCccEEEEecchhhhccCcHHHH-HHHHhh----CC
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGFKDQI-YDVYRY----LP 204 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~vvvDE~h~~~~~~~~~~~-~~i~~~----~~ 204 (354)
.+..++|+.........+..+++|+|+||+.+.+.+....+ .+.++++||+||||++.+.+....+ ..++.. ..
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 164 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC--
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccC
Confidence 99999998877666666666789999999999999888776 7889999999999999876533322 222222 13
Q ss_pred CCCcEEEEEeeCchh-----------HHHHHHhc------------------cCCCeEEEecCCcccccC----------
Q 018574 205 PDLQVVLISATLPHE-----------ILEMTTKF------------------MTDPVKILVKRDELTLEG---------- 245 (354)
Q Consensus 205 ~~~~~i~lSaT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---------- 245 (354)
+..+++++|||++.. +..+...+ ...+..............
T Consensus 165 ~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (556)
T 4a2p_A 165 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 244 (556)
T ss_dssp -CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHH
Confidence 568899999999431 11111111 111111111100000000
Q ss_pred ----c-e----------------------eEEE-----------------------------------------------
Q 018574 246 ----I-K----------------------QFFV----------------------------------------------- 251 (354)
Q Consensus 246 ----~-~----------------------~~~~----------------------------------------------- 251 (354)
. . .+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (556)
T 4a2p_A 245 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARII 324 (556)
T ss_dssp HHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 0 0 0000
Q ss_pred -----------------------------------------EeccccchHHHHHHHHhh----CCCCcEEEEcCchhhHH
Q 018574 252 -----------------------------------------AVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVD 286 (354)
Q Consensus 252 -----------------------------------------~~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~ 286 (354)
.......+...+.+++.. ..++++||||++++.++
T Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~ 404 (556)
T 4a2p_A 325 DALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS 404 (556)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHH
Confidence 000012244555555543 45689999999999999
Q ss_pred HHHHHHhcC------------CCeEEEeecCCCHHHHHHHHHHHhC-CCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 287 WLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 287 ~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+++.|++. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+|+
T Consensus 405 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~ 484 (556)
T 4a2p_A 405 ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNV 484 (556)
T ss_dssp HHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCH
T ss_pred HHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCH
Confidence 999999875 4455566788999999999999999 999999999999999999999999999999985
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.7e-42 Score=329.04 Aligned_cols=309 Identities=20% Similarity=0.291 Sum_probs=206.3
Q ss_pred HHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC--ceeEEEEcCCHHHHHHHHHHHH
Q 018574 45 LRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~ 122 (354)
.+.+..+|+..|+++|.++++++++|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999987765432 2579999999999999999999
Q ss_pred HhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc-cCCCccEEEEecchhhhccC-cHHHHHHHH
Q 018574 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVY 200 (354)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~ 200 (354)
++....++.+..+.|+.........+..+++|+|+||+.|.+.+....+ .+.++++||+||||++.... +...+..++
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9988778999999998766555555556799999999999999887666 67889999999999987553 333333233
Q ss_pred hh-----CCCCCcEEEEEeeCc-------hhHHHHHHh----------------------ccCCCeEEEecCCcccc---
Q 018574 201 RY-----LPPDLQVVLISATLP-------HEILEMTTK----------------------FMTDPVKILVKRDELTL--- 243 (354)
Q Consensus 201 ~~-----~~~~~~~i~lSaT~~-------~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~--- 243 (354)
.. .++..++++||||+. ......+.. +...|............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 246789999999996 221111111 11112111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 018574 244 -------------------------------------------------------------------------------- 243 (354)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (354)
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence
Q ss_pred ----------------------------cCceeEEEE---------------eccccchHHHHHHHHhhC----CCCcEE
Q 018574 244 ----------------------------EGIKQFFVA---------------VEREEWKFDTLCDLYDTL----TITQAV 276 (354)
Q Consensus 244 ----------------------------~~~~~~~~~---------------~~~~~~~~~~l~~~l~~~----~~~~~l 276 (354)
..+.+.+.. ......+...+..++... .++++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 000000000 001233666677777654 567999
Q ss_pred EEcCchhhHHHHHHHHhcCC----CeEEEe--------ecCCCHHHHHHHHHHHhC-CCCcEEEEccccccCCCcCCCcE
Q 018574 277 IFCNTKRKVDWLTEKMRGYN----FTVSSM--------HGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQAIL 343 (354)
Q Consensus 277 vf~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~~~~ 343 (354)
|||++++.++.+++.|++.+ +++..+ |++++..+|.++++.|++ |+.+|||||+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999887 788888 459999999999999998 99999999999999999999999
Q ss_pred EEecCCCCCC
Q 018574 344 FFFLFLFCNV 353 (354)
Q Consensus 344 Vi~~~~p~s~ 353 (354)
||+||+|+|+
T Consensus 483 VI~~d~p~s~ 492 (696)
T 2ykg_A 483 VILYEYVGNV 492 (696)
T ss_dssp EEEESCC--C
T ss_pred EEEeCCCCCH
Confidence 9999999986
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.8e-41 Score=312.29 Aligned_cols=298 Identities=18% Similarity=0.243 Sum_probs=202.8
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC--ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
+|+++|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+.+.++....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999988876432 56799999999999999999999988778999
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc-cCCCccEEEEecchhhhccC-cHHHHHHHHhhC-----CC
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYL-----PP 205 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~~~-----~~ 205 (354)
..++|+.........+..+++|+|+||+.+...+....+ .+.++++||+||||++...+ +...+...+... ..
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999877766666666789999999999998887766 67889999999999997764 333333333332 24
Q ss_pred CCcEEEEEeeCchh-----------HHHHHHhccCCCeEEEecCCc-------ccccCceeEEEE---------------
Q 018574 206 DLQVVLISATLPHE-----------ILEMTTKFMTDPVKILVKRDE-------LTLEGIKQFFVA--------------- 252 (354)
Q Consensus 206 ~~~~i~lSaT~~~~-----------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------- 252 (354)
..+++++|||+... +..+... +... .+...... ...+........
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 57899999999542 1111111 1101 11100000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 018574 253 -------------------------------------------------------------------------------- 252 (354)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (354)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred --------------------------------------------eccccchHHHHHHHHhh----CCCCcEEEEcCchhh
Q 018574 253 --------------------------------------------VEREEWKFDTLCDLYDT----LTITQAVIFCNTKRK 284 (354)
Q Consensus 253 --------------------------------------------~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~ 284 (354)
......+...+.+++.. ...+++||||++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 00012244555555543 456899999999999
Q ss_pred HHHHHHHHhcCC----C--------eEEEeecCCCHHHHHHHHHHHhC-CCCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 285 VDWLTEKMRGYN----F--------TVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 285 ~~~l~~~l~~~~----~--------~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
++.++..|++.+ + ....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999998763 2 34455669999999999999999 9999999999999999999999999999999
Q ss_pred CCC
Q 018574 352 NVF 354 (354)
Q Consensus 352 s~~ 354 (354)
|+.
T Consensus 482 s~~ 484 (555)
T 3tbk_A 482 NVI 484 (555)
T ss_dssp SCC
T ss_pred CHH
Confidence 973
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-40 Score=315.21 Aligned_cols=305 Identities=15% Similarity=0.218 Sum_probs=235.4
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhh-hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
..+|+++++++++.+.+++.||..|+++|.++++. +.+++++++.+|||+|||+++.++++..+... +.+++|++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~ 84 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPL 84 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSC
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCc
Confidence 35799999999999999999999999999999999 78899999999999999999999998776532 3579999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
++|+.|+++.++.+. ..++++..++|+....... . ..++|+|+||+++...+......+.++++||+||+|.+.+.
T Consensus 85 r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~ 160 (715)
T 2va8_A 85 RALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDP 160 (715)
T ss_dssp HHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCT
T ss_pred HHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCc
Confidence 999999999996443 3478888888876654432 2 35899999999999988876666789999999999998877
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCccccc---------CceeEEE-------Eec
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE---------GIKQFFV-------AVE 254 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-------~~~ 254 (354)
.+...+..++..++ +.|++++|||+++. ..+.. ++..+. +.......... ....... .+.
T Consensus 161 ~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (715)
T 2va8_A 161 ERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVH 236 (715)
T ss_dssp TTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred ccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCc-cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcc
Confidence 77888888877765 88999999999752 33333 332211 11111000000 0000000 011
Q ss_pred cccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCC------------------------------------Ce
Q 018574 255 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYN------------------------------------FT 298 (354)
Q Consensus 255 ~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~------------------------------------~~ 298 (354)
........+.+.+. .++++||||+++++++.++..|.+.. ..
T Consensus 237 ~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~ 314 (715)
T 2va8_A 237 GDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKG 314 (715)
T ss_dssp SSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcC
Confidence 11224455555554 45899999999999999999997642 24
Q ss_pred EEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe----cC
Q 018574 299 VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF----LF 348 (354)
Q Consensus 299 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~----~~ 348 (354)
+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+ ||
T Consensus 315 v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d 368 (715)
T 2va8_A 315 VAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFN 368 (715)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC----
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeecc
Confidence 889999999999999999999999999999999999999999999999 88
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.5e-41 Score=320.56 Aligned_cols=299 Identities=16% Similarity=0.231 Sum_probs=235.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhh-hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
+|+++++++.+.+.+++.|+..|+++|.++++. +.+++++++.+|||+|||.++.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 689999999999999999999999999999998 88899999999999999999999998776532 357999999999
Q ss_pred HHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCc
Q 018574 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~ 192 (354)
|+.|+++.++.+. ..++++..++|+....... ...++|+|+||+++...+......+.++++||+||+|.+.+...
T Consensus 80 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 9999999996554 3478888888876554332 23589999999999988887666678899999999999988778
Q ss_pred HHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEE-----Eecc-----ccchHHH
Q 018574 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV-----AVER-----EEWKFDT 262 (354)
Q Consensus 193 ~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~ 262 (354)
...+..++..++.+.|++++|||+++. ..+. .++.... +..... +..+...+. .... .......
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~-~~l~~~~-~~~~~r---p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP-EELA-EWLNAEL-IVSDWR---PVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH-HHHH-HHTTEEE-EECCCC---SSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHH-HHhCCcc-cCCCCC---CCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 888888888877789999999999752 3333 3333211 111100 000111100 0111 1224455
Q ss_pred HHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC---------------------------------CCeEEEeecCCCHH
Q 018574 263 LCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY---------------------------------NFTVSSMHGDMPQK 309 (354)
Q Consensus 263 l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~ 309 (354)
+.+.+. .++++||||++++.++.++..|.+. ...+..+||+++.+
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 555554 3589999999999999999998753 12488999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 310 ERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 310 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~ 344 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIR 344 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEEC
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEc
Confidence 9999999999999999999999999999999999999
No 24
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-40 Score=320.76 Aligned_cols=304 Identities=17% Similarity=0.215 Sum_probs=191.3
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC--ceeEEEEcCCHHHHHHHHHHHHHhccC
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (354)
.+|+..|+++|.++++.++.|+++++.+|||+|||.+++++++..+..... +.++||++|+++|+.||.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 457889999999999999999999999999999999999999988866432 567999999999999999999999887
Q ss_pred cCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc-cCCCccEEEEecchhhhccCc-HHHHHHHHhh---
Q 018574 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGF-KDQIYDVYRY--- 202 (354)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~vvvDE~h~~~~~~~-~~~~~~i~~~--- 202 (354)
.++.+..++|+.........+..+++|+|+||+++.+.+....+ .+.++++||+||||++...+. ...+..+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 78999999999877766666667799999999999998887766 678899999999999876643 3333233322
Q ss_pred -CCCCCcEEEEEeeCch-----------hHHHHHH------------------hccCCCeEEEecCCcccccC-------
Q 018574 203 -LPPDLQVVLISATLPH-----------EILEMTT------------------KFMTDPVKILVKRDELTLEG------- 245 (354)
Q Consensus 203 -~~~~~~~i~lSaT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~------- 245 (354)
..+..+++++|||+.. .+..+.. .+...+..............
T Consensus 403 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (797)
T 4a2q_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (797)
T ss_dssp TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHH
Confidence 1456899999999952 1111111 11122211111000000000
Q ss_pred --------ceeE--------E--EEe------------------------------------------------------
Q 018574 246 --------IKQF--------F--VAV------------------------------------------------------ 253 (354)
Q Consensus 246 --------~~~~--------~--~~~------------------------------------------------------ 253 (354)
.... . ...
T Consensus 483 l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 562 (797)
T 4a2q_A 483 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (797)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 0000 0 000
Q ss_pred ----------------------------------------------ccccchHHHHHHHHhh----CCCCcEEEEcCchh
Q 018574 254 ----------------------------------------------EREEWKFDTLCDLYDT----LTITQAVIFCNTKR 283 (354)
Q Consensus 254 ----------------------------------------------~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~ 283 (354)
.....+...+..++.. ..++++||||++++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~ 642 (797)
T 4a2q_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (797)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHH
T ss_pred cHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHH
Confidence 0012244455555543 55689999999999
Q ss_pred hHHHHHHHHhcC------------CCeEEEeecCCCHHHHHHHHHHHhC-CCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 284 KVDWLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 284 ~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
.++.++..|++. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|
T Consensus 643 ~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p 722 (797)
T 4a2q_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (797)
T ss_dssp HHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCC
T ss_pred HHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999763 4556667888999999999999999 999999999999999999999999999999
Q ss_pred CCC
Q 018574 351 CNV 353 (354)
Q Consensus 351 ~s~ 353 (354)
+|+
T Consensus 723 ~s~ 725 (797)
T 4a2q_A 723 GNV 725 (797)
T ss_dssp SCH
T ss_pred CCH
Confidence 985
No 25
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=7.2e-41 Score=327.49 Aligned_cols=285 Identities=18% Similarity=0.240 Sum_probs=229.1
Q ss_pred HHHHH-HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 018574 45 LRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 45 ~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
.+.+. .+|| +|+++|.++++.+++|+++++.+|||+|||.+++.+++..+ ..+.++||++|+++|+.|+.+.+..
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHH
Confidence 33443 3688 79999999999999999999999999999998888887776 3345799999999999999999999
Q ss_pred hccCcCeEEEEEeCCcch---HHhHHhhcCC-CeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc----------
Q 018574 124 IGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS---------- 189 (354)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~---------- 189 (354)
++ ..++++..++|+.+. ......+..+ ++|+|+||++|.+++.. +...++++||+||+|++..
T Consensus 144 l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 144 LA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp TS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred hh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 77 778899999999877 5556666665 99999999999877664 5567899999999987654
Q ss_pred -cCcHHH-HHHHHhhCC-----------CCCcEEEEEeeC-chhHH-HHHHhccCCCeEEEecCCcccccCceeEEEEec
Q 018574 190 -RGFKDQ-IYDVYRYLP-----------PDLQVVLISATL-PHEIL-EMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254 (354)
Q Consensus 190 -~~~~~~-~~~i~~~~~-----------~~~~~i~lSaT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (354)
.+|... +..+++.++ .+.|++++|||+ +.... ......+. +..........++.+.+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC-
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec-
Confidence 566666 778887766 789999999994 44332 22223222 22223334455666666554
Q ss_pred cccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEE-EeecCCCHHHHHHHHHHHhCCCCcEEEE----c
Q 018574 255 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVS-SMHGDMPQKERDAIMGEFRSGTTRVLIT----T 329 (354)
Q Consensus 255 ~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T 329 (354)
.+...+..++... ++++||||++++.++.++..|+..++.+. .+|| +|.+ ++.|++|+.+|||| |
T Consensus 296 ---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~T 365 (1104)
T 4ddu_A 296 ---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYY 365 (1104)
T ss_dssp ---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTH
T ss_pred ---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCC
Confidence 2556667777664 38999999999999999999999999998 9998 2555 99999999999999 9
Q ss_pred cccccCCCcCC-CcEEEecCCCC
Q 018574 330 DVWARGLDVQQ-AILFFFLFLFC 351 (354)
Q Consensus 330 ~~~~~Gidi~~-~~~Vi~~~~p~ 351 (354)
+++++|+|+|+ +++|||||+|.
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCE
T ss_pred CeeEecCcCCCCCCEEEEECCCC
Confidence 99999999999 99999999998
No 26
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=325.54 Aligned_cols=306 Identities=18% Similarity=0.247 Sum_probs=240.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
...|...++++.+...+...+...|+++|.++++.+.+++++++.+|||+|||.+|.++++..+.. +.+++|++|++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptr 237 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIK 237 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSH
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcH
Confidence 346777777777777776666668999999999999999999999999999999999999988744 35699999999
Q ss_pred HHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC
Q 018574 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~ 191 (354)
+|+.|+++.+..... .+..++|+... ..+++|+|+||+.|.+.+......+.++++|||||||++.+.+
T Consensus 238 aLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~ 306 (1108)
T 3l9o_A 238 ALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE 306 (1108)
T ss_dssp HHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH
T ss_pred HHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc
Confidence 999999999998774 45567777653 2458999999999999888877767889999999999999888
Q ss_pred cHHHHHHHHhhCCCCCcEEEEEeeCchh--HHHHHHhccCCCeEEEecCCcccccCceeEEEE---------eccc----
Q 018574 192 FKDQIYDVYRYLPPDLQVVLISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA---------VERE---- 256 (354)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~i~lSaT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---- 256 (354)
+...+..++..++.+.|++++|||++.. ...........+..+........ .+.+++.. +...
T Consensus 307 rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 307 RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTTEEC
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeeccccchh
Confidence 9999999999999999999999998764 33555555555554443332111 11111110 0000
Q ss_pred -----------------------------------------cchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC
Q 018574 257 -----------------------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY 295 (354)
Q Consensus 257 -----------------------------------------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 295 (354)
......+...+.....+++||||++++.++.++..|...
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 112333444555556679999999999999999998653
Q ss_pred CCe---------------------------------------EEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Q 018574 296 NFT---------------------------------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGL 336 (354)
Q Consensus 296 ~~~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 336 (354)
++. +..+||++++.+|..+++.|++|..+|||||+++++|+
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 222 78899999999999999999999999999999999999
Q ss_pred CcCCCcEEEecCCCCCC
Q 018574 337 DVQQAILFFFLFLFCNV 353 (354)
Q Consensus 337 di~~~~~Vi~~~~p~s~ 353 (354)
|+|++++||+++.|.+.
T Consensus 545 DiP~v~~VI~~~~~~d~ 561 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDG 561 (1108)
T ss_dssp CC--CEEEESCSEEESS
T ss_pred CCCCceEEEecCcccCc
Confidence 99999999999887653
No 27
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-39 Score=298.60 Aligned_cols=295 Identities=19% Similarity=0.240 Sum_probs=222.2
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
+|+++|.++++.++++ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++.......+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 7999999999999999 9999999999999999999888765 234579999999999999999999987544557888
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEe
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
++|+....... .....++|+|+||+.+...+....+...++++||+||||++........+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 88877655432 23335899999999999988877778889999999999999765444445555555567889999999
Q ss_pred eCchh---HHHHHHhccCCCeEEEecCCcccc---cCceeEEEE------------------------------------
Q 018574 215 TLPHE---ILEMTTKFMTDPVKILVKRDELTL---EGIKQFFVA------------------------------------ 252 (354)
Q Consensus 215 T~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------------------------------ 252 (354)
|+... ...+...+................ ......+..
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99743 333333322211111100000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 018574 253 -------------------------------------------------------------------------------- 252 (354)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (354)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred -------------eccccchHHHHHHHHhh----CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeec--------CCC
Q 018574 253 -------------VEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHG--------DMP 307 (354)
Q Consensus 253 -------------~~~~~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~ 307 (354)
......+...+.+++.. ..++++||||++++.++.+++.|++.++.+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 00122355566666665 46789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 308 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
..+|.++++.|++|+.+|||+|+++++|+|+|++++||++|.|+|+
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~ 450 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSA 450 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCH
Confidence 9999999999999999999999999999999999999999999874
No 28
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=8.6e-41 Score=317.73 Aligned_cols=301 Identities=16% Similarity=0.201 Sum_probs=229.2
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 34 SFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 34 ~~~~~~--~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
+|++++ +++.+.+.+++.||..|+++|.++++.+.+++++++.+|||+|||.++.++++..+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 578888 9999999999999999999999999999999999999999999999999999887654 34699999999
Q ss_pred HHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC
Q 018574 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~ 191 (354)
+|+.|+++.++.+. ..++++..++|+...... ....++|+|+||+++...+......+.++++||+||+|.+.+.+
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996544 447888888887665432 12368999999999999888766657889999999999998777
Q ss_pred cHHHHHHHHhhC---CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCccccc-----CceeEEEEec----cccch
Q 018574 192 FKDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE-----GIKQFFVAVE----REEWK 259 (354)
Q Consensus 192 ~~~~~~~i~~~~---~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~ 259 (354)
....+..++..+ +++.|++++|||+++ ...+.. ++..+. +.......... .....+.... .....
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKF 231 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCH
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhH
Confidence 666666665544 578999999999985 233333 343221 11111111000 0000011000 00114
Q ss_pred HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC------------------------------CCeEEEeecCCCHH
Q 018574 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY------------------------------NFTVSSMHGDMPQK 309 (354)
Q Consensus 260 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~~ 309 (354)
...+.+.+. .++++||||+++++++.++..|.+. +..+..+||+++.+
T Consensus 232 ~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 309 (702)
T 2p6r_A 232 EELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNG 309 (702)
T ss_dssp HHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHH
T ss_pred HHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHH
Confidence 455555554 4589999999999999999988642 13477899999999
Q ss_pred HHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 310 ERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 310 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 310 ~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 310 QRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVR 346 (702)
T ss_dssp HHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEEC
T ss_pred HHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEc
Confidence 9999999999999999999999999999999999999
No 29
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.3e-40 Score=319.13 Aligned_cols=308 Identities=18% Similarity=0.221 Sum_probs=191.2
Q ss_pred HHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC--ceeEEEEcCCHHHHHHHHHHHHH
Q 018574 46 RGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
....-.|+..|+++|.++++.++.|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.||.+.+++
T Consensus 239 ~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 239 KPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ---------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3333456779999999999999999999999999999999999999988766432 56799999999999999999999
Q ss_pred hccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCc-cCCCccEEEEecchhhhccC-cHHHHHHHHh
Q 018574 124 IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYR 201 (354)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~-~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~ 201 (354)
+....++.+..++|+.........+..+++|+|+||+++.+.+....+ .+.++++||+||||++...+ +...+..+..
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 987778999999998866655455555689999999999998887666 67789999999999987654 3333333333
Q ss_pred h----CCCCCcEEEEEeeCch-----------hHHHHHH------------------hccCCCeEEEecCCcccccC---
Q 018574 202 Y----LPPDLQVVLISATLPH-----------EILEMTT------------------KFMTDPVKILVKRDELTLEG--- 245 (354)
Q Consensus 202 ~----~~~~~~~i~lSaT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~--- 245 (354)
. ..+..+++++|||+.. .+..+.. .+...+..............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1456889999999942 1111111 11122221111111000000
Q ss_pred ------------------------cee----------EEEE---------------------------------------
Q 018574 246 ------------------------IKQ----------FFVA--------------------------------------- 252 (354)
Q Consensus 246 ------------------------~~~----------~~~~--------------------------------------- 252 (354)
+.. +...
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 0000
Q ss_pred -------------------------------------------------eccccchHHHHHHHHhh----CCCCcEEEEc
Q 018574 253 -------------------------------------------------VEREEWKFDTLCDLYDT----LTITQAVIFC 279 (354)
Q Consensus 253 -------------------------------------------------~~~~~~~~~~l~~~l~~----~~~~~~lvf~ 279 (354)
......+...+..++.. ..++++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 00012244445555554 3457999999
Q ss_pred CchhhHHHHHHHHhcC------------CCeEEEeecCCCHHHHHHHHHHHhC-CCCcEEEEccccccCCCcCCCcEEEe
Q 018574 280 NTKRKVDWLTEKMRGY------------NFTVSSMHGDMPQKERDAIMGEFRS-GTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 280 ~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
++++.++.++..|++. |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999875 4455566888999999999999999 99999999999999999999999999
Q ss_pred cCCCCCC
Q 018574 347 LFLFCNV 353 (354)
Q Consensus 347 ~~~p~s~ 353 (354)
||+|+|+
T Consensus 719 yD~p~s~ 725 (936)
T 4a2w_A 719 YEYSGNV 725 (936)
T ss_dssp ESCCSCS
T ss_pred eCCCCCH
Confidence 9999986
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=315.39 Aligned_cols=298 Identities=16% Similarity=0.238 Sum_probs=206.0
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC---CceeEEEEcCCHHHHHHH-HHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQT-EKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~-~~~~~~~~~~~~~ 130 (354)
.|+++|.++++.+++|+++++.+|||+|||++|+++++..+.... .+.++||++|+++|+.|| .+.++++... ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 899999999999999999999999999999999999988765431 225699999999999999 9999998754 47
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHH------hcCCccCCCccEEEEecchhhhccC-cHHHHHHHHhh-
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI------KRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY- 202 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~------~~~~~~~~~~~~vvvDE~h~~~~~~-~~~~~~~i~~~- 202 (354)
.+..+.|+.........+...++|+|+||+.|.+.+ ....+.+.++++||+||||++.... +...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888888887766555555567999999999999877 4445677889999999999985432 33333322221
Q ss_pred ---C---------CCCCcEEEEEeeCchh-----------HHHHHHhcc------------------CCCeEEEec-CCc
Q 018574 203 ---L---------PPDLQVVLISATLPHE-----------ILEMTTKFM------------------TDPVKILVK-RDE 240 (354)
Q Consensus 203 ---~---------~~~~~~i~lSaT~~~~-----------~~~~~~~~~------------------~~~~~~~~~-~~~ 240 (354)
. .+..+++++|||+... +..+...+. ..|...... ...
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1 1567899999999762 121211111 111111100 000
Q ss_pred cc-c---------------------cCce-eEEE----------------------------------------------
Q 018574 241 LT-L---------------------EGIK-QFFV---------------------------------------------- 251 (354)
Q Consensus 241 ~~-~---------------------~~~~-~~~~---------------------------------------------- 251 (354)
.. . .... ..|.
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0000 0000
Q ss_pred -----------------------------------------------------EeccccchHHHHHHHHhhCC-CCcEEE
Q 018574 252 -----------------------------------------------------AVEREEWKFDTLCDLYDTLT-ITQAVI 277 (354)
Q Consensus 252 -----------------------------------------------------~~~~~~~~~~~l~~~l~~~~-~~~~lv 277 (354)
.......-...+...+...+ ++++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 00000001122222233333 689999
Q ss_pred EcCchhhHHHHHHHHhcC------CCeEEEeecC--------CCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcE
Q 018574 278 FCNTKRKVDWLTEKMRGY------NFTVSSMHGD--------MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAIL 343 (354)
Q Consensus 278 f~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~ 343 (354)
||++++.++.+++.|++. |+++..+||+ ++..+|.++++.|++|+.+|||||+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 018574 344 FFFLFLFCNV 353 (354)
Q Consensus 344 Vi~~~~p~s~ 353 (354)
||+||+|+|+
T Consensus 486 VI~~d~p~s~ 495 (699)
T 4gl2_A 486 VIRYGLVTNE 495 (699)
T ss_dssp CEEESCCCCH
T ss_pred EEEeCCCCCH
Confidence 9999999985
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-38 Score=303.64 Aligned_cols=285 Identities=19% Similarity=0.288 Sum_probs=224.1
Q ss_pred HHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccC
Q 018574 48 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (354)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (354)
...++| +|+++|.++++.+.+++++++.+|||+|||.++.++++..+.. +.+++|++|+++|+.|+++.+.....
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 344677 6999999999999999999999999999999999888877643 35799999999999999999988764
Q ss_pred cCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCC
Q 018574 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~ 207 (354)
.+..++|+.... ..++|+|+||+.|.+.+.+....+.++++||+||+|.+.+.+++..+..++..++.+.
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 566677776543 2479999999999988887777778999999999999998888888999999999999
Q ss_pred cEEEEEeeCchhHH--HHHHhccCCCeEEEecCCcccccCceeEEEE---------eccc--------------------
Q 018574 208 QVVLISATLPHEIL--EMTTKFMTDPVKILVKRDELTLEGIKQFFVA---------VERE-------------------- 256 (354)
Q Consensus 208 ~~i~lSaT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------------------- 256 (354)
|++++|||+++... ..+......+..+....... ..+.+++.. +...
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 99999999976422 23333334444443332211 111221111 0000
Q ss_pred -------------------------cchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCe-------------
Q 018574 257 -------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT------------- 298 (354)
Q Consensus 257 -------------------------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~------------- 298 (354)
......+...+......++||||+++..++.++..|...++.
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 112334445555555579999999999999999999775432
Q ss_pred --------------------------EEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe----cC
Q 018574 299 --------------------------VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF----LF 348 (354)
Q Consensus 299 --------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~----~~ 348 (354)
+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+ ||
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccC
Confidence 788999999999999999999999999999999999999999999999 99
Q ss_pred C
Q 018574 349 L 349 (354)
Q Consensus 349 ~ 349 (354)
.
T Consensus 463 ~ 463 (1010)
T 2xgj_A 463 G 463 (1010)
T ss_dssp S
T ss_pred C
Confidence 8
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.6e-40 Score=321.42 Aligned_cols=281 Identities=17% Similarity=0.240 Sum_probs=218.3
Q ss_pred HHHHH-CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
+.+.+ +||. | ++|.++++.+++|+++++.+|||+|||. +.++++..+.. .++++||++|+++|+.|+.+.++.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 44444 8998 9 9999999999999999999999999997 77777776654 3567999999999999999999999
Q ss_pred ccCcCe----EEEEEeCCcchHHh---HHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHH
Q 018574 125 GDFINI----QAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (354)
Q Consensus 125 ~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~ 197 (354)
+...++ .+..++|+.+...+ ...+.. ++|+|+||++|.+.+.. +.++++||+||||++.+ +...+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 888788 88899998877653 344455 99999999999886664 55899999999999987 457777
Q ss_pred HHHhhCC-----------CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHH
Q 018574 198 DVYRYLP-----------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (354)
Q Consensus 198 ~i~~~~~-----------~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (354)
.++..+. ...|.+++|||++.. ......+...+..+...........+.+.+.. ..+...+..+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHH
Confidence 7777663 467899999999876 32222222222222223333334455555542 3356666777
Q ss_pred HhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEE----ccccccCCCcCCC-
Q 018574 267 YDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLIT----TDVWARGLDVQQA- 341 (354)
Q Consensus 267 l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----T~~~~~Gidi~~~- 341 (354)
++.. ++++||||++++.++.+++.|++. +.+..+||++ .++++.|++|+.+|||| |+++++|+|+|+|
T Consensus 271 l~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 271 LEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp HTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred Hhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 7765 478999999999999999999988 8999999997 47789999999999999 8999999999996
Q ss_pred cEEEecCCC
Q 018574 342 ILFFFLFLF 350 (354)
Q Consensus 342 ~~Vi~~~~p 350 (354)
++||++|+|
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 999999999
No 33
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.1e-37 Score=258.64 Aligned_cols=220 Identities=29% Similarity=0.459 Sum_probs=199.5
Q ss_pred cceeecccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-
Q 018574 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS- 98 (354)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~- 98 (354)
++.......+....+|.++++++.+.+.+.++||..|+++|.++++.+++|+++++.+|||+|||.+|++|++..+...
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 3344555677888999999999999999999999999999999999999999999999999999999999999877532
Q ss_pred ----CCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCC
Q 018574 99 ----SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (354)
Q Consensus 99 ----~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~ 174 (354)
..++++||++|+++|+.|+.+.++.+....++.+..+.|+.........+..+++|+|+||+++.+.+......+.
T Consensus 96 ~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 96 FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCT
T ss_pred ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcc
Confidence 3466799999999999999999999988888999999999988888887888899999999999999988888889
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCC
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
++++||+||||++.+.+|...+..+++.++++.|++++|||+++....+...++.++..+.....
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999988876654
No 34
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-36 Score=245.86 Aligned_cols=202 Identities=34% Similarity=0.640 Sum_probs=186.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
.+|+++++++.+.+.+.++|+..|+++|.++++.+++++++++.+|||+|||.+++.+++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 57999999999999999999999999999999999999999999999999999999999988876666778999999999
Q ss_pred HHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC
Q 018574 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~ 191 (354)
|+.|+.+.+..+.... +..+..+.++.........+..+++|+|+||+++...+......+.+++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999988766 788888999988877777777889999999999999888877778899999999999999989
Q ss_pred cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEE
Q 018574 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (354)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~ 234 (354)
+...+..+...++++.|++++|||++.....+...++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999998899999999999999999999999888654
No 35
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=6.1e-38 Score=288.47 Aligned_cols=285 Identities=17% Similarity=0.170 Sum_probs=211.8
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
+|+++|.++++.+++++++++.+|||+|||.+++.++...+... +.++||++|+++|+.||.+.+.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 89999999999999999999999999999999999888776543 2379999999999999999999987666677888
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEe
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
+.++...... ...+++|+|+|++.+.. .....+.++++||+||||++.. ..+..+++.+....+++++||
T Consensus 191 ~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 8877665543 44568999999997643 2234456899999999999854 456777788878889999999
Q ss_pred eCchhHHHHHH--hccCCCeEEEecCC------cccccCceeEEEEeccc--------------------cchHHHHHHH
Q 018574 215 TLPHEILEMTT--KFMTDPVKILVKRD------ELTLEGIKQFFVAVERE--------------------EWKFDTLCDL 266 (354)
Q Consensus 215 T~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~ 266 (354)
|++........ .++. +........ ......+.......+.. ..+...+..+
T Consensus 261 Tp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKL 339 (510)
T ss_dssp CGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHH
Confidence 99665322111 1111 111111111 01111111111111100 0122334444
Q ss_pred HhhC---CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEc-cccccCCCcCCCc
Q 018574 267 YDTL---TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQAI 342 (354)
Q Consensus 267 l~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~~~ 342 (354)
+... ..++++|||+ .++++.+++.|++.+.++..+||+++..+|.++++.|++|+.+||||| +++++|+|+|+++
T Consensus 340 l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~ 418 (510)
T 2oca_A 340 AIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLH 418 (510)
T ss_dssp HHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEE
T ss_pred HHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCc
Confidence 4433 3345666666 899999999999988899999999999999999999999999999999 9999999999999
Q ss_pred EEEecCCCCCC
Q 018574 343 LFFFLFLFCNV 353 (354)
Q Consensus 343 ~Vi~~~~p~s~ 353 (354)
+||+++.|+|+
T Consensus 419 ~vi~~~~~~s~ 429 (510)
T 2oca_A 419 HVVLAHGVKSK 429 (510)
T ss_dssp EEEESSCCCSC
T ss_pred EEEEeCCCCCH
Confidence 99999999885
No 36
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5.6e-37 Score=253.50 Aligned_cols=211 Identities=57% Similarity=0.958 Sum_probs=179.4
Q ss_pred ccCcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEE
Q 018574 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (354)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~l 105 (354)
+..++...+|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||.+|+++++..+.....+.++|
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~l 102 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQAL 102 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999887665667899
Q ss_pred EEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCC-CeEEEeCcHHHHHHHhcCCccCCCccEEEEecc
Q 018574 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~ 184 (354)
|++|+++|+.|+.+.+++++...++.+..+.++.........+..+ ++|+|+||+++.+.+....+.+.++++||+|||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 103 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred EEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 9999999999999999999888888888888888776666666555 899999999999998887777888999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEe
Q 018574 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (354)
Q Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~ 236 (354)
|++.+.++...+..+++.++...|++++|||++++...+...++.+|..+..
T Consensus 183 h~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 183 DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999998876654
No 37
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.3e-36 Score=295.33 Aligned_cols=285 Identities=18% Similarity=0.281 Sum_probs=221.4
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
.++| +|+++|.++++.+++|+++++.+|||+|||+++++++...+.. +.+++|++|+++|+.|+++.+.+... +
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 3566 6899999999999999999999999999999988888776543 35699999999999999999987643 5
Q ss_pred eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcE
Q 018574 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 209 (354)
+.+..++|+.... ..++|+|+||+.|.+.+......+.++++||+||+|++.++++...+..++..++++.++
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 6777788876533 347999999999999888777777899999999999998888888899999999999999
Q ss_pred EEEEeeCchhHHHHHHhc---cCCCeEEEecCCcccccCcee--------------------------------------
Q 018574 210 VLISATLPHEILEMTTKF---MTDPVKILVKRDELTLEGIKQ-------------------------------------- 248 (354)
Q Consensus 210 i~lSaT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 248 (354)
+++|||+++.. .+...+ ......+....... ..+.+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~--~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRP--VPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCS--SCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCCC--ccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 99999987542 222222 11122111111100 00000
Q ss_pred ------------------------------------------------------EEEEeccccchHHHHHHHHhhCCCCc
Q 018574 249 ------------------------------------------------------FFVAVEREEWKFDTLCDLYDTLTITQ 274 (354)
Q Consensus 249 ------------------------------------------------------~~~~~~~~~~~~~~l~~~l~~~~~~~ 274 (354)
.+............+...+.....++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~ 338 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLP 338 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCC
Confidence 00001112234667777788777789
Q ss_pred EEEEcCchhhHHHHHHHHhcCCC---------------------------------------eEEEeecCCCHHHHHHHH
Q 018574 275 AVIFCNTKRKVDWLTEKMRGYNF---------------------------------------TVSSMHGDMPQKERDAIM 315 (354)
Q Consensus 275 ~lvf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~ 315 (354)
+||||++++.++.++..|.+.++ .+..+||++++.+|..++
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999999977655 478999999999999999
Q ss_pred HHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 316 GEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 316 ~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
+.|++|..+|||||+++++|+|+|+ ..||+.++|+
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k 453 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRK 453 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEE
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCC-ceEEEecccc
Confidence 9999999999999999999999999 6677766654
No 38
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=9.3e-37 Score=249.37 Aligned_cols=207 Identities=34% Similarity=0.557 Sum_probs=186.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
..+|+++++++.+.+.++++|+..|+++|.++++.+++++++++.+|||+|||.+|+++++..+.....+.++||++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 35799999999999999999999999999999999999999999999999999999999999887666677899999999
Q ss_pred HHHHHHHHHHHHhccCc----CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh
Q 018574 112 ELATQTEKVILAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~ 187 (354)
+|+.|+.+.++++.... ++.+..+.|+.........+..+++|+|+||+++.+.+......+.++++||+||||++
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999988665 67888888888776665556667899999999999988887777888999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecC
Q 018574 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (354)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~ 238 (354)
.+.++...+..++..++.+.|++++|||++.++..+...++.+|..+....
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999988999999999999999999999999998765443
No 39
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=252.56 Aligned_cols=208 Identities=33% Similarity=0.543 Sum_probs=189.8
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
.....+|+++++++.+.+.++.+|+..|+++|.++++.+++++++++.+|||+|||.+|+++++..+.....+.++||++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999998887766667899999
Q ss_pred CCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecchhh
Q 018574 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (354)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~h~~ 187 (354)
|+++|+.|+.+.++++....++.+..+.|+.....+...+..+++|+|+||+++.+.+.. ..+.+.++++||+||||++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 999999999999999988888999999999887777777778899999999999988775 4566788999999999999
Q ss_pred hccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEe
Q 018574 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (354)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~ 236 (354)
.+.++...+..++..++.+.|++++|||++..+..+...++.+|..+..
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999989999999999999999999999999987654
No 40
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.6e-36 Score=247.77 Aligned_cols=210 Identities=56% Similarity=0.936 Sum_probs=181.3
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
+....+|+++++++.+.+.++.+|+..|+++|.++++.+++++++++.+|||+|||.+|+++++..+.....+.++||++
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 89 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999887766777899999
Q ss_pred CCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhh
Q 018574 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (354)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~ 188 (354)
|+++|+.|+.+.+..+....++.+..+.|+.........+.. ++|+|+||+++.+.+........++++||+||||++.
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 168 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHh
Confidence 999999999999999988888888888888776665554444 8999999999999888877778899999999999999
Q ss_pred ccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCC
Q 018574 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (354)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
+.++...+..++..++++.|++++|||+++....+...++.+|..+.....
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 169 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999887765443
No 41
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-36 Score=254.18 Aligned_cols=218 Identities=31% Similarity=0.503 Sum_probs=187.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC---------Cc
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---------RE 101 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---------~~ 101 (354)
...+|+++++++.+.+++...|+..|+++|.++++.+++++++++.+|||+|||.+|+++++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 678899999999999999999999999999999999999999999999999999999999998775432 23
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEE
Q 018574 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVL 181 (354)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvv 181 (354)
+++||++|+++|+.|+.+.++.+....++.+..+.|+.....+...+..+++|+|+||+++.+.+......+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 57999999999999999999999888888888999998888877778888999999999999998888778889999999
Q ss_pred ecchhhhccCcHHHHHHHHhhC--CC--CCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCcee
Q 018574 182 DESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ 248 (354)
Q Consensus 182 DE~h~~~~~~~~~~~~~i~~~~--~~--~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (354)
||||++.+.+|...+..++..+ +. +.|++++|||++++...+...++.++..+.........+++.+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999999853 33 6799999999999999999999999988877766555555554
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-37 Score=292.03 Aligned_cols=290 Identities=20% Similarity=0.235 Sum_probs=213.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHhHhhhhcC------CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHH
Q 018574 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (354)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (354)
+.+.+.++.++| .|+++|.++++.+.++ .++++++|||+|||.+++++++..+..+ .+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 455566678999 9999999999998874 5899999999999999999999887644 46999999999999
Q ss_pred HHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC
Q 018574 116 QTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~ 191 (354)
|+++.+.++....++++..++|+....+. ...+.. .++|+|+||+.+.. ...+.++++||+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 99999999988888999999998766543 233444 48999999987743 4556789999999999963221
Q ss_pred cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHh-h-
Q 018574 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T- 269 (354)
Q Consensus 192 ~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~- 269 (354)
...+.......++++||||+.+....+.. ..+...............+...+ .... ....+...+. .
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~---~~~~-~~~~l~~~i~~~l 575 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTML---VPMD-RVNEVYEFVRQEV 575 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECC---CCSS-THHHHHHHHHHHT
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEE---eccc-hHHHHHHHHHHHH
Confidence 11222233568999999999876555443 22221111121111111222111 1122 2333333333 2
Q ss_pred CCCCcEEEEcCchh--------hHHHHHHHHhc---CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCc
Q 018574 270 LTITQAVIFCNTKR--------KVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338 (354)
Q Consensus 270 ~~~~~~lvf~~~~~--------~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 338 (354)
..+++++|||+.++ .++.+++.|++ .+..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi 655 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC
Confidence 23568999999764 47888888887 36789999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCC
Q 018574 339 QQAILFFFLFLFC 351 (354)
Q Consensus 339 ~~~~~Vi~~~~p~ 351 (354)
|++++||++|.|+
T Consensus 656 P~v~~VIi~d~~r 668 (780)
T 1gm5_A 656 PRANVMVIENPER 668 (780)
T ss_dssp TTCCEEEBCSCSS
T ss_pred CCCCEEEEeCCCC
Confidence 9999999999996
No 43
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=247.98 Aligned_cols=209 Identities=31% Similarity=0.480 Sum_probs=183.0
Q ss_pred ccCcccccCccc-CCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC------
Q 018574 26 TEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------ 98 (354)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~------ 98 (354)
...+++..+|.+ +++++.+.+++.+.|+..|+++|.++++.+++|+++++.+|||+|||.+|++|++..+...
T Consensus 12 ~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~ 91 (228)
T 3iuy_A 12 RLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 91 (228)
T ss_dssp CCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC--------
T ss_pred CcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhc
Confidence 345677889999 7999999999999999999999999999999999999999999999999999998876532
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccE
Q 018574 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (354)
Q Consensus 99 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~ 178 (354)
..++++||++|+++|+.|+.+.++++. ..++.+..+.++.........+..+++|+|+||+++.+.+......+.++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 245679999999999999999999986 4577888888888877777777888999999999999988888888889999
Q ss_pred EEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEE
Q 018574 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (354)
Q Consensus 179 vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~ 235 (354)
||+||||++.+.++...+..++..++++.|++++|||+++....+...++.+|..+.
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999887654
No 44
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=5.4e-36 Score=246.52 Aligned_cols=207 Identities=35% Similarity=0.574 Sum_probs=182.4
Q ss_pred CcccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
.+....+|+++++++.+.+.+++.||..|+++|.++++.+++|+++++.+|||+|||.+|+++++..+.....+.++||+
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil 98 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILIL 98 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999888766667789999
Q ss_pred cCCHHHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
+|+++|+.|+.+.++.+.... ++++..+.|+.........+ .+++|+|+||+++.+.+....+.+.++++||+||||+
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 999999999999999987655 78888888888766655544 4689999999999998887777778899999999999
Q ss_pred hhccC-cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEE
Q 018574 187 MLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (354)
Q Consensus 187 ~~~~~-~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~ 235 (354)
+.+.+ |...+..+++.++...|++++|||+++........++.+|..+.
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 178 LLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp HHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred hhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 99886 99999999999998999999999999999999999988887654
No 45
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.1e-35 Score=275.53 Aligned_cols=294 Identities=17% Similarity=0.181 Sum_probs=217.7
Q ss_pred HCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC
Q 018574 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (354)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (354)
..|+ .|++.|..+++.+++|+ +..++||+|||++|.+|++..... +..++|++||++|+.|.++.+..+...++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4799 99999999999999998 999999999999999999844333 34699999999999999999999999999
Q ss_pred eEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC------CccCCCccEEEEecchhhh-ccC----------
Q 018574 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SRG---------- 191 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~-~~~---------- 191 (354)
+++..+.||.+...... ..+++|+|+||+.| .+++... .+.++.+.++|+||||+++ +.+
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 99999999987654433 34689999999999 5555432 3556889999999999987 443
Q ss_pred -----cHHHHHHHHhhCC---------CCCcEE-----------------EEEeeCchh---HHHHH--HhccC-CCeEE
Q 018574 192 -----FKDQIYDVYRYLP---------PDLQVV-----------------LISATLPHE---ILEMT--TKFMT-DPVKI 234 (354)
Q Consensus 192 -----~~~~~~~i~~~~~---------~~~~~i-----------------~lSaT~~~~---~~~~~--~~~~~-~~~~~ 234 (354)
+...+..++..++ +..|++ ++|||.+.. +.... ..++. +..++
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 6678889999886 356776 788987532 22221 11111 11111
Q ss_pred Ee------------------------------------cCCcccccCc--------------------------------
Q 018574 235 LV------------------------------------KRDELTLEGI-------------------------------- 246 (354)
Q Consensus 235 ~~------------------------------------~~~~~~~~~~-------------------------------- 246 (354)
.. .........+
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 10 0000000000
Q ss_pred --------------eeEEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHH
Q 018574 247 --------------KQFFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 310 (354)
Q Consensus 247 --------------~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 310 (354)
.+..........|...+...+.. ..+.++||||+|++.++.++..|+..|+++..+||++...+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 00001112233477777776654 24578999999999999999999999999999999987666
Q ss_pred HHHHHHHHhCCCCcEEEEccccccCCCcC--------CCcEEEecCCCCCC
Q 018574 311 RDAIMGEFRSGTTRVLITTDVWARGLDVQ--------QAILFFFLFLFCNV 353 (354)
Q Consensus 311 r~~~~~~f~~g~~~vlv~T~~~~~Gidi~--------~~~~Vi~~~~p~s~ 353 (354)
+..+.+.|+. ..|+|||+++++|+|++ ++.+||++|+|.|.
T Consensus 471 r~ii~~ag~~--g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~ 519 (844)
T 1tf5_A 471 AQIIEEAGQK--GAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESR 519 (844)
T ss_dssp HHHHTTTTST--TCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSH
T ss_pred HHHHHHcCCC--CeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCH
Confidence 6555444444 47999999999999999 78899999999984
No 46
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.9e-35 Score=289.84 Aligned_cols=293 Identities=17% Similarity=0.206 Sum_probs=222.4
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHHhHhhhhc----CC--cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 38 MGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIK----GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 38 ~~~~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~----~~--~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
++.++...+.+.. ++| .++++|.++++.+++ ++ ++++++|||+|||.+++.+++..+.. +.+++|++|+
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 4566777776654 677 679999999999886 55 89999999999999998888776543 3479999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
++|+.|+++.+.+.....++++..+++.....+. ...+.. .++|+|+||+.+. ..+.+.++++||+||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 9999999999998887778888888776544332 233444 4899999997653 345678999999999999
Q ss_pred hhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHH
Q 018574 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (354)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (354)
+. ......+..++.+.++++||||+.+....+......+... ..........+...+.... .......+
T Consensus 737 ~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~--i~~~~~~r~~i~~~~~~~~----~~~i~~~i 805 (1151)
T 2eyq_A 737 FG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI--IATPPARRLAVKTFVREYD----SMVVREAI 805 (1151)
T ss_dssp SC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEE--CCCCCCBCBCEEEEEEECC----HHHHHHHH
T ss_pred cC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceE--EecCCCCccccEEEEecCC----HHHHHHHH
Confidence 52 2334455555677899999999988777666555443322 2222222223333333322 22222223
Q ss_pred Hhh-CCCCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcE
Q 018574 267 YDT-LTITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAIL 343 (354)
Q Consensus 267 l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~ 343 (354)
+.. ..+++++|||++++.++.+++.|++. +..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++
T Consensus 806 l~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 806 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp HHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 322 24579999999999999999999887 788999999999999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 018574 344 FFFLFLF 350 (354)
Q Consensus 344 Vi~~~~p 350 (354)
||+++.+
T Consensus 886 VIi~~~~ 892 (1151)
T 2eyq_A 886 IIIERAD 892 (1151)
T ss_dssp EEETTTT
T ss_pred EEEeCCC
Confidence 9988874
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.7e-37 Score=279.35 Aligned_cols=267 Identities=16% Similarity=0.196 Sum_probs=201.1
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeE-EE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (354)
.|+++|.++++.+++++++++.+|||+|||.+++.++... +.++||++|+++|+.||.+++.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6899999999999999999999999999999999887765 346999999999999999999874 466 77
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.++++... ..+|+|+|++.+...... ...++++||+||+|++.+..+.. +...+ ...+++++|
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 77766542 478999999998765542 12468999999999998877664 34444 467899999
Q ss_pred eeCchh-------------------HHHHHHhccCCCeE--EEecCCcc------------------------cccCcee
Q 018574 214 ATLPHE-------------------ILEMTTKFMTDPVK--ILVKRDEL------------------------TLEGIKQ 248 (354)
Q Consensus 214 aT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~------------------------~~~~~~~ 248 (354)
||+... ...+...++..+.. +....... ....+..
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 999631 22222222222111 11110000 0000000
Q ss_pred EEE--------------------EeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCH
Q 018574 249 FFV--------------------AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQ 308 (354)
Q Consensus 249 ~~~--------------------~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 308 (354)
.+. .......+...+.+++....++++||||++.+.++.+++.|. +..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCH
Confidence 000 001122366788888888778899999999999999999984 5678999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+|.++++.|++|+.+|||+|+++++|+|+|++++||++|.|+|+
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~ 425 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSA 425 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCH
Confidence 999999999999999999999999999999999999999999985
No 48
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.9e-35 Score=238.69 Aligned_cols=201 Identities=35% Similarity=0.584 Sum_probs=180.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC---CCceeEEEEcCC
Q 018574 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPT 110 (354)
Q Consensus 34 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p~ 110 (354)
+|+++++++.+.+.+++.|+..|+++|.++++.+++++++++.+|||+|||.+++.+++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999887542 345689999999
Q ss_pred HHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhcc
Q 018574 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (354)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~ 190 (354)
++|+.|+.+.+.++... +.+..+.++.........+..+++|+|+||+.+.+.+......+.++++||+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998755 5667788887776666666678999999999999988887778889999999999999998
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEe
Q 018574 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (354)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~ 236 (354)
++...+..++..++.+.|++++|||+++....+.+.++.+|..+..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999989999999999999999999999998876653
No 49
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.6e-35 Score=240.26 Aligned_cols=204 Identities=36% Similarity=0.605 Sum_probs=181.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
..+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++.+|||+|||.+++.+++..+.....+.++||++|++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 46799999999999999999999999999999999999999999999999999999999998887665566899999999
Q ss_pred HHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
+|+.|+.+.++++.... ++++..+.|+.........+.. .++|+|+||+.+...+....+.+.+++++|+||||++.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 99999999999988765 7888888888876666555543 479999999999999888777888999999999999986
Q ss_pred -cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEE
Q 018574 190 -RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (354)
Q Consensus 190 -~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~ 235 (354)
.++...+..+++.++.+.|++++|||++.....+.+.++.+|..+.
T Consensus 173 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 173 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4788889999999888999999999999999999999999887653
No 50
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=242.13 Aligned_cols=208 Identities=28% Similarity=0.499 Sum_probs=182.7
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC----CCceeE
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQA 104 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~ 104 (354)
.....+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++.+|||+|||.+|+++++..+... ..+.++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 3456789999999999999999999999999999999999999999999999999999999998876432 235679
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-CccCCCccEEEEec
Q 018574 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (354)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vvvDE 183 (354)
||++|+++|+.|+.+.++.++...++.+..+.|+.....+...+ .+++|+|+||+++.+.+... .+...++++||+||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999988888998999988776655554 46899999999998877654 46678899999999
Q ss_pred chhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEec
Q 018574 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (354)
Q Consensus 184 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~ 237 (354)
||++.+.++...+..++..++.+.|++++|||+++....+...++.+|..+...
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999998877643
No 51
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=250.10 Aligned_cols=205 Identities=37% Similarity=0.597 Sum_probs=182.8
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcC--CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
....+|+++++++.+.+.+..+||..|+++|.++++.++.+ +++++.+|||+|||++|++|++..+.....++++||+
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 45689999999999999999999999999999999999987 9999999999999999999999998877777789999
Q ss_pred cCCHHHHHHHHHHHHHhccCc-CeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecch
Q 018574 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESD 185 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~h 185 (354)
+|+++|+.|+.+.+..++... ++.+..+.++...... ...+++|+|+||+++.+++.. ..+.+.++++||+||+|
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999988754 6777778777654432 245689999999999998865 55667899999999999
Q ss_pred hhhc-cCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEec
Q 018574 186 EMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (354)
Q Consensus 186 ~~~~-~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~ 237 (354)
++.+ .++...+..+.+.++.+.|++++|||++..+..+...++.+|..+...
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9987 688999999999999999999999999999999999999999877654
No 52
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=241.37 Aligned_cols=200 Identities=29% Similarity=0.506 Sum_probs=176.4
Q ss_pred ccCcccCC--CCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC----CCceeEE
Q 018574 32 ITSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQAL 105 (354)
Q Consensus 32 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~l 105 (354)
..+|.+++ +++.+.+.++++||..|+++|.++++.++.++++++.+|||+|||.+|+++++..+... ..+.+++
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 45566666 99999999999999999999999999999999999999999999999999999877542 1356799
Q ss_pred EEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC-CccCCCccEEEEecc
Q 018574 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDES 184 (354)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~-~~~~~~~~~vvvDE~ 184 (354)
|++|+++|+.|+.+.++++....+..+..+.|+.........+..+++|+|+||+++...+... .+.+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988888999999998888877777778999999999998877664 466788999999999
Q ss_pred hhhhccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCC
Q 018574 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDP 231 (354)
Q Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~ 231 (354)
|++.+.++...+..+++.++...|++++|||+++++..+.+.++..+
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999998877654
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.1e-34 Score=266.23 Aligned_cols=281 Identities=15% Similarity=0.172 Sum_probs=186.1
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|. .|++.|...+..+++|+ +..++||+|||.+|++|++..... +..++|++||++|+.|.++.+..+...+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 565 89999999999999997 999999999999999999855433 346999999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC------CccCCCccEEEEecchhhh-ccC-----------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SRG----------- 191 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~-~~~----------- 191 (354)
++..+.||.+.... ....+++|+|+||+.| .++++.. ....+.+.++|+||+|+++ +.+
T Consensus 145 ~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 99999999875433 3334689999999999 6776654 2556889999999999998 332
Q ss_pred ----cHHHHHHHHhhCCC--------------------CCcEE------------------------EEEeeCchhHHHH
Q 018574 192 ----FKDQIYDVYRYLPP--------------------DLQVV------------------------LISATLPHEILEM 223 (354)
Q Consensus 192 ----~~~~~~~i~~~~~~--------------------~~~~i------------------------~lSaT~~~~~~~~ 223 (354)
+...+..++..++. ..|++ ++|||.+......
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 45667777777753 34443 6788864311111
Q ss_pred ---H--HhccC-C-------C-----------------------------eEEEecCCcccccCcee-------------
Q 018574 224 ---T--TKFMT-D-------P-----------------------------VKILVKRDELTLEGIKQ------------- 248 (354)
Q Consensus 224 ---~--~~~~~-~-------~-----------------------------~~~~~~~~~~~~~~~~~------------- 248 (354)
+ ..++. + . ..+.+.........+.+
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 0 00000 0 0 01111111111111110
Q ss_pred ---------------------------------EEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhhHHHHHHHHh
Q 018574 249 ---------------------------------FFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMR 293 (354)
Q Consensus 249 ---------------------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~l~ 293 (354)
..........|...+...+.. ..+.++||||+|++.++.++..|+
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 001112233477777777754 345789999999999999999999
Q ss_pred cCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCC
Q 018574 294 GYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341 (354)
Q Consensus 294 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 341 (354)
+.|+++.++||+....++..+.+.|+.| .|+|||+++++|+||+..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 9999999999998777777677778777 799999999999999974
No 54
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=236.64 Aligned_cols=218 Identities=24% Similarity=0.447 Sum_probs=182.5
Q ss_pred eeecccCcccccCcccC----CCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc
Q 018574 22 VFETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (354)
Q Consensus 22 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~ 97 (354)
..+....+....+|+++ ++++.+.+.+.+.||..|+++|.++++.+++|+++++.+|||+|||.+|++|++..+..
T Consensus 14 ~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 14 HVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp EEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred EecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 34445667778888886 89999999999999999999999999999999999999999999999999999988764
Q ss_pred -CCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhH-HhhcCCCeEEEeCcHHHHHHHhcC--CccC
Q 018574 98 -SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI-RKLEHGVHVVSGTPGRVCDMIKRK--TLRT 173 (354)
Q Consensus 98 -~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~~~~~--~~~~ 173 (354)
...+.+++|++|+++|+.|+.+.+.++....++.+..+.++....... .....+++|+|+||+++...+... .+.+
T Consensus 94 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 94 PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 334568999999999999999999999888888877776654433222 123456899999999999988775 4667
Q ss_pred CCccEEEEecchhhhc---cCcHHHHHHHHhhCC-CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCC
Q 018574 174 RAIKLLVLDESDEMLS---RGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~---~~~~~~~~~i~~~~~-~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
.++++||+||||++.+ .++...+..++..+. .+.|++++|||++.++..+...++.++..+.....
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 8899999999999987 468888888877664 57899999999999999999999999988876553
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=4.5e-33 Score=257.72 Aligned_cols=280 Identities=18% Similarity=0.221 Sum_probs=208.0
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|..++..+++|+ +..++||+|||+++.+|++.....+ ..++|++|++.|+.|.++.+..+...+++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g---~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG---NGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT---SCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 688 99999999999999987 9999999999999999997544433 35999999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcC------CccCCCccEEEEecchhhh-cc------------
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SR------------ 190 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~-~~------------ 190 (354)
++..+.||.+...... ..+++|+|+||+.| .+++... .+.++.+.++|+||+|+++ +.
T Consensus 182 sv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 182 QVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp CEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred eEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 9999999887544333 33589999999999 6666543 3556789999999999998 32
Q ss_pred ---CcHHHHHHHHhhCC---------CCCcEE-----------------EEEeeCchh---HHHHH--HhccC-CCeEE-
Q 018574 191 ---GFKDQIYDVYRYLP---------PDLQVV-----------------LISATLPHE---ILEMT--TKFMT-DPVKI- 234 (354)
Q Consensus 191 ---~~~~~~~~i~~~~~---------~~~~~i-----------------~lSaT~~~~---~~~~~--~~~~~-~~~~~- 234 (354)
++...+..+...++ +..|++ ++|||.+.. +...+ ..++. +..++
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 46788999999997 677887 788987642 22211 11111 11111
Q ss_pred ------EecC-----------------------------CcccccCce--------------------------------
Q 018574 235 ------LVKR-----------------------------DELTLEGIK-------------------------------- 247 (354)
Q Consensus 235 ------~~~~-----------------------------~~~~~~~~~-------------------------------- 247 (354)
.++. .......+.
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 1110 000000011
Q ss_pred --------------e-EEEEeccccchHHHHHHHHhh--CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHH
Q 018574 248 --------------Q-FFVAVEREEWKFDTLCDLYDT--LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKE 310 (354)
Q Consensus 248 --------------~-~~~~~~~~~~~~~~l~~~l~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 310 (354)
+ .+... ....|...+...+.. ..+.++||||+|++.++.++..|++.|+++.++||+....+
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rE 498 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE 498 (922)
T ss_dssp EEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH
T ss_pred eEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHH
Confidence 0 11222 233477777776653 24568999999999999999999999999999999976666
Q ss_pred HHHHHHHHhCCCCcEEEEccccccCCCcCCC
Q 018574 311 RDAIMGEFRSGTTRVLITTDVWARGLDVQQA 341 (354)
Q Consensus 311 r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~ 341 (354)
+..+.+.|+.| .|+|||+++++|+||+..
T Consensus 499 a~iia~agr~G--~VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 499 ATIIAVAGRRG--GVTVATNMAGRGTDIVLG 527 (922)
T ss_dssp HHHHHTTTSTT--CEEEEETTCSTTCCCCTT
T ss_pred HHHHHhcCCCC--eEEEecchhhcCccccCC
Confidence 65566666665 799999999999999975
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.8e-33 Score=283.12 Aligned_cols=301 Identities=15% Similarity=0.204 Sum_probs=221.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (354)
+.+...+.+...+|..++|.|.++++.+.. ++++++.||||||||+++.++++..+.... +.+++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 445666777777899999999999999876 578999999999999999999998886543 346999999999999999
Q ss_pred HHHHH-hccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcC--CccCCCccEEEEecchhhhccCcHHH
Q 018574 119 KVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLVLDESDEMLSRGFKDQ 195 (354)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vvvDE~h~~~~~~~~~~ 195 (354)
+.+.+ ++...++++..++|+...+... ...++|+|+||+++..++++. ...+.++++||+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 98865 6677889999999887654332 234799999999997776542 223568999999999988654 3444
Q ss_pred HHHH-------HhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch------HHH
Q 018574 196 IYDV-------YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK------FDT 262 (354)
Q Consensus 196 ~~~i-------~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 262 (354)
+..+ ....+.+.|++++|||+++. .++..++...+...........+..+...+......... ...
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 4333 34456789999999999763 445544433332222222223333344444333332211 111
Q ss_pred HHH-HHhhCCCCcEEEEcCchhhHHHHHHHHhcC----------------------------------CCeEEEeecCCC
Q 018574 263 LCD-LYDTLTITQAVIFCNTKRKVDWLTEKMRGY----------------------------------NFTVSSMHGDMP 307 (354)
Q Consensus 263 l~~-~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~~ 307 (354)
+.. +.+....+++||||++++.++.++..|... ...+..+|++++
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 222 233445679999999999998888766321 124788999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 308 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
+.+|..+.+.|++|.++|||||+.+++|+|+|..++||.
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~ 1263 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIM 1263 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEe
Confidence 999999999999999999999999999999999888883
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.3e-34 Score=287.02 Aligned_cols=290 Identities=16% Similarity=0.286 Sum_probs=213.0
Q ss_pred CCCCChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccC--------CCceeEEEEcCCHHHHHHHHHHHH
Q 018574 52 GFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTS--------SREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
||..+++.|.++++.++. +++++++||||+|||.++.++++..+... ..+.++||++|+++|+.|..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 788999999999998775 78999999999999999999999887542 245689999999999999999999
Q ss_pred HhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCC--ccCCCccEEEEecchhhhccCcHHHHHHHH
Q 018574 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (354)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~ 200 (354)
+.....++++..++|+....... ..+++|+|+||+++..+++... ..+..+++||+||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 88888899999999987654321 2458999999999976665432 2357899999999998755 3444444333
Q ss_pred -------hhCCCCCcEEEEEeeCchhHHHHHHhccCCC-eEEEecCCcccccCceeEEEEeccccc--hH----HHHHH-
Q 018574 201 -------RYLPPDLQVVLISATLPHEILEMTTKFMTDP-VKILVKRDELTLEGIKQFFVAVEREEW--KF----DTLCD- 265 (354)
Q Consensus 201 -------~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~l~~- 265 (354)
...+++.|++++|||+++. .++...+...+ ...........+-.+.+.+........ .. ..+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 2346788999999999763 44444332221 111112222222233444333332221 11 12222
Q ss_pred HHhhCCCCcEEEEcCchhhHHHHHHHHhcC-------------------------------------CCeEEEeecCCCH
Q 018574 266 LYDTLTITQAVIFCNTKRKVDWLTEKMRGY-------------------------------------NFTVSSMHGDMPQ 308 (354)
Q Consensus 266 ~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~ 308 (354)
+......+++||||++++.++.+++.|.+. ...+..+||+++.
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 223344578999999999998888877531 1237889999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 309 KERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
.+|..+.+.|++|.++|||||+.++.|+|+|..++||.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~ 428 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK 428 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe
Confidence 99999999999999999999999999999999999985
No 58
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.7e-34 Score=268.78 Aligned_cols=306 Identities=15% Similarity=0.191 Sum_probs=217.3
Q ss_pred cccccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhhc-CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEE
Q 018574 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (354)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 107 (354)
.....+|.++++++.+.+.++..+ ..|.+.|++.+..++. ++++++.+|||+|||+.....+.........+.+++++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec
Confidence 345678999999999999999988 5788888888877665 67899999999999984333322222222224569999
Q ss_pred cCCHHHHHHHHHHHHHhc-cCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchh
Q 018574 108 SPTRELATQTEKVILAIG-DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (354)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~ 186 (354)
+|+++|+.|+++.+.... ...+..+........ .....++|+++|++.+.+.+... ..+.++++||+||+|.
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHE 219 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccc
Confidence 999999999998775543 222222221111111 11245789999999998876654 3467899999999996
Q ss_pred -hhccC-cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccch---HH
Q 018574 187 -MLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK---FD 261 (354)
Q Consensus 187 -~~~~~-~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 261 (354)
.++.. ....+..+.... ++.+++++|||++.+ .+ ..++.....+...... ..+...|......... ..
T Consensus 220 R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~ 292 (773)
T 2xau_A 220 RTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIR 292 (773)
T ss_dssp CCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHH
Confidence 44432 234445555443 578999999999653 23 3344443333333221 2234444333333322 33
Q ss_pred HHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhc-----------CCCeEEEeecCCCHHHHHHHHHHHh-----CCCCcE
Q 018574 262 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG-----------YNFTVSSMHGDMPQKERDAIMGEFR-----SGTTRV 325 (354)
Q Consensus 262 ~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~v 325 (354)
.+..+......+++||||+++++++.+++.|++ .++.+..+||+++.++|.++++.|. +|+.+|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV 372 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV 372 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE
Confidence 344444455678999999999999999999975 5788999999999999999999999 999999
Q ss_pred EEEccccccCCCcCCCcEEEecCC
Q 018574 326 LITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 326 lv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
||||+++++|+|+|++++||++|+
T Consensus 373 lVAT~iae~GidIp~v~~VId~g~ 396 (773)
T 2xau_A 373 VISTNIAETSLTIDGIVYVVDPGF 396 (773)
T ss_dssp EEECTHHHHTCCCTTEEEEEECSE
T ss_pred EEeCcHHHhCcCcCCeEEEEeCCC
Confidence 999999999999999999999988
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=6.7e-34 Score=265.70 Aligned_cols=284 Identities=17% Similarity=0.254 Sum_probs=172.4
Q ss_pred CChHHHHHhHhhhhc----C-CcEEEEcCCCCchhhHhHHHHhhccccC------CCceeEEEEcCCHHHHHHHH-HHHH
Q 018574 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATQTE-KVIL 122 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~-~~~ii~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~p~~~l~~q~~-~~~~ 122 (354)
.|+++|.++++.+++ + +++++.+|||+|||.+++..+...+... ..+.++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998876 4 6689999999999998766554444332 14568999999999999999 7776
Q ss_pred HhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHh----cCCccCCCccEEEEecchhhhccCcHHHHHH
Q 018574 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK----RKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (354)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~----~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~ 198 (354)
.++. .+..+.++ ....+.+|+|+|++.+..... ...+....+++||+||||++.... ...+..
T Consensus 258 ~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 5542 23233222 123458999999999987654 234455678999999999986542 245556
Q ss_pred HHhhCCCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCccc---ccCceeEEEEe----------------------
Q 018574 199 VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT---LEGIKQFFVAV---------------------- 253 (354)
Q Consensus 199 i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------------------- 253 (354)
+++.++ ..+++++|||+..........++..+........... ...........
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666664 4679999999875433323333333222110000000 00000000000
Q ss_pred ----cccc--------ch----HHHHHHHHhh-CCCCcEEEEcCchhhHHHHHHHHhcCCC--------eEEEeecCCCH
Q 018574 254 ----EREE--------WK----FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRGYNF--------TVSSMHGDMPQ 308 (354)
Q Consensus 254 ----~~~~--------~~----~~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~~ 308 (354)
.... .. ...+...+.. ...+++||||+++++++.+++.|++.+. .+..+||.++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 0000 01 1123333333 3447999999999999999999976543 2677888865
Q ss_pred HHHHHHHHHHhCCCCc---EEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 309 KERDAIMGEFRSGTTR---VLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 309 ~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
++|.++++.|++|+.+ ||+||+++++|+|+|++++||+++.|+|+
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~ 530 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSM 530 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCCh
Confidence 4699999999998766 88899999999999999999999999884
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.8e-33 Score=253.38 Aligned_cols=257 Identities=14% Similarity=0.096 Sum_probs=181.9
Q ss_pred CCCCChHHHHHhHhhhhcCCcE-EEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 52 GFEKPSAIQQRAVMPIIKGRDV-IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~-ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
|+.++++.|. +++.+++++++ ++.+|||||||.+++++++..+... +.+++|++|+++|+.|+.+.+.. .
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g------~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALRG------L 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT------S
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhcC------c
Confidence 6778999985 78888888776 9999999999999999988766543 45799999999999999998742 2
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHh-hCCCCCcE
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR-YLPPDLQV 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~-~~~~~~~~ 209 (354)
.+......... ....+..+.++|++.+.+.+... ..+.++++||+||+|++ +..+...+..+.. ...++.|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 22211111100 12334678899999887766543 44678999999999986 3322222222221 23457899
Q ss_pred EEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHH
Q 018574 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT 289 (354)
Q Consensus 210 i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~ 289 (354)
+++|||++..... .+...+..+..... . +. .. + ..+...+... .+++||||++++.++.++
T Consensus 145 i~~SAT~~~~~~~---~~~~~~~~~~~~~~-~--p~-~~-~----------~~~~~~l~~~-~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDP---FPQSNSPIEDIERE-I--PE-RS-W----------NTGFDWITDY-QGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCS---SCCCSSCEEEEECC-C--CS-SC-C----------SSSCHHHHHC-CSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchh---hhcCCCceEecCcc-C--Cc-hh-h----------HHHHHHHHhC-CCCEEEEcCCHHHHHHHH
Confidence 9999999764322 12222222222110 0 00 00 0 0011222222 469999999999999999
Q ss_pred HHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecC
Q 018574 290 EKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 290 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
+.|++.++.+..+|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||++|
T Consensus 206 ~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp HHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECC
T ss_pred HHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECC
Confidence 999999999999999753 57899999999999999999999999999 9999999
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.9e-34 Score=265.06 Aligned_cols=272 Identities=15% Similarity=0.093 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHH
Q 018574 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (354)
Q Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (354)
+++++.+.+.+... ...++|.|...++.+++++++++.+|||||||.+|+++++..+... +.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 55666666555443 3677888888899999999999999999999999999998877543 45799999999999999
Q ss_pred HHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHH
Q 018574 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (354)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~ 197 (354)
.+.++. ..+. ..... .. ..-..+..+.+.|.+.+.+.+... ..+.++++||+||||++ +.++...+.
T Consensus 232 ~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 988752 2222 11111 00 011223456777888777655543 34678999999999998 555666666
Q ss_pred HHHhhCC-CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEE
Q 018574 198 DVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 276 (354)
Q Consensus 198 ~i~~~~~-~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l 276 (354)
.+...++ .+.|++++|||++.....+.. ..+..+...... +... ...+...+.. ..+++|
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-------------~~~~--~~~ll~~l~~-~~~~~L 359 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-------------PERS--WNTGFDWITD-YQGKTV 359 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------------CSSC--CSSSCHHHHH-CCSCEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------------CHHH--HHHHHHHHHh-CCCCEE
Confidence 6666654 678999999999776332111 122222221110 0010 0111122222 257999
Q ss_pred EEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 277 IFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 277 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
|||++++.++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+++.
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred EEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcc
Confidence 99999999999999999999999999985 678899999999999999999999999998 999844443
No 62
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2e-32 Score=251.49 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=181.8
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.++.+|..++..+..++++++.+|||+|||.++.++++.. +.+++|++|+++|+.|+++.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 6678888888888889999999999999999999888762 3469999999999999998876544 334445
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCc--EEEE
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ--VVLI 212 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~--~i~l 212 (354)
..++.. ...+++|+|+||++| +....+.+.++++||+||+|.+ +.++...+..+++.++...+ ++++
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEE
Confidence 555543 345689999999997 4556677788999999999754 56677778888888877666 7888
Q ss_pred EeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHH
Q 018574 213 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 292 (354)
Q Consensus 213 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l 292 (354)
|||++.... ...+......... .... ....... . +.....+++||||++++.++++++.|
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~~---~~~i---~~~~~~~-~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALSN---TGEI---PFYGKAI-P-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECBS---CSSE---EETTEEE-C-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEeecc---cchh---HHHHhhh-h-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 999987311 1111111111000 0000 0000000 0 22335689999999999999999999
Q ss_pred hcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 293 RGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
++.++.+..+||++++++ |.++..+|||||+++++|+|+| +++||+
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~ 462 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVID 462 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEE
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEe
Confidence 999999999999998764 4567779999999999999997 999983
No 63
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4e-32 Score=264.34 Aligned_cols=291 Identities=16% Similarity=0.127 Sum_probs=200.8
Q ss_pred CChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
.|+|||.+++.+++. +.++++.++||+|||.+++..+...+..+. ..++|||||+ +|+.||..++.+.. ++.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 799999999998887 458899999999999998887776665443 3469999999 99999999996655 3555
Q ss_pred EEEeCCcchHHhHH--hhcCCCeEEEeCcHHHHHHHhc-CCccCCCccEEEEecchhhhccCc-----HHHHHHHHhhCC
Q 018574 133 HACVGGKSVGEDIR--KLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGF-----KDQIYDVYRYLP 204 (354)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vvvDE~h~~~~~~~-----~~~~~~i~~~~~ 204 (354)
..+.++........ ......+|+|+|++.+...... ..+...++++||+||||++..... ...+..+. .
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~---~ 304 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA---E 304 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH---T
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh---h
Confidence 44444332211111 1123478999999888542211 123445789999999999965431 22333332 2
Q ss_pred CCCcEEEEEeeCch----hHHHHHH----------------------------hccCC-------------C--------
Q 018574 205 PDLQVVLISATLPH----EILEMTT----------------------------KFMTD-------------P-------- 231 (354)
Q Consensus 205 ~~~~~i~lSaT~~~----~~~~~~~----------------------------~~~~~-------------~-------- 231 (354)
...+++++||||.+ +...+.. .+... .
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 45579999999843 1111100 00000 0
Q ss_pred -------------------------------eEEEecCCcc---cccCceeEEE--------------------------
Q 018574 232 -------------------------------VKILVKRDEL---TLEGIKQFFV-------------------------- 251 (354)
Q Consensus 232 -------------------------------~~~~~~~~~~---~~~~~~~~~~-------------------------- 251 (354)
..+....... ..........
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRA 464 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGT
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHH
Confidence 0000000000 0000000000
Q ss_pred ------------------EeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhc-CCCeEEEeecCCCHHHHH
Q 018574 252 ------------------AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRG-YNFTVSSMHGDMPQKERD 312 (354)
Q Consensus 252 ------------------~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~ 312 (354)
.......+...+..++....++++||||++++.++.++..|++ .|+++..+||+++..+|.
T Consensus 465 ~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~ 544 (968)
T 3dmq_A 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERD 544 (968)
T ss_dssp HHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHH
T ss_pred hhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Confidence 0111223678888888887788999999999999999999994 599999999999999999
Q ss_pred HHHHHHhCCC--CcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 313 AIMGEFRSGT--TRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 313 ~~~~~f~~g~--~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+++.|++|+ .+|||||+++++|+|+|++++||++|+|+|+
T Consensus 545 ~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~ 587 (968)
T 3dmq_A 545 RAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNP 587 (968)
T ss_dssp HHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSH
T ss_pred HHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCH
Confidence 9999999998 9999999999999999999999999999985
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.4e-31 Score=243.04 Aligned_cols=283 Identities=13% Similarity=0.163 Sum_probs=193.9
Q ss_pred CChHHHHHhHhhhh----cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+|||.++++++. .++++++..+||+|||.+++..+.... ......++||||| .+|+.||.++++++... .
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~-~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~--~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK-KENELTPSLVICP-LSVLKNWEEELSKFAPH--L 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH-HTTCCSSEEEEEC-STTHHHHHHHHHHHCTT--S
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCCCCEEEEcc-HHHHHHHHHHHHHHCCC--c
Confidence 79999999998773 478999999999999988766555443 3333456999999 57999999999998754 4
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEE
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 210 (354)
.+..+.++... .....++|+|+|++.+.+... +....+++||+||||++.+... .....+..+ ...+.+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l-~~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKEL-KSKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTS-CEEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhh-ccCcEE
Confidence 44455554421 112347999999998865433 3345789999999999976542 223334444 346789
Q ss_pred EEEeeCchh-HHHH---HH---------------------------------hccCCCeEEEecCCc----ccccCceeE
Q 018574 211 LISATLPHE-ILEM---TT---------------------------------KFMTDPVKILVKRDE----LTLEGIKQF 249 (354)
Q Consensus 211 ~lSaT~~~~-~~~~---~~---------------------------------~~~~~~~~~~~~~~~----~~~~~~~~~ 249 (354)
++||||... ..++ +. ..+. +..+...... ...+.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~lp~~~~~ 260 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDLPDKIET 260 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTSCSEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcCCCCeEE
Confidence 999998432 1111 11 1111 1111100000 011111111
Q ss_pred EEEecc--------------------------------------------------------ccchHHHHHHHHhhC--C
Q 018574 250 FVAVER--------------------------------------------------------EEWKFDTLCDLYDTL--T 271 (354)
Q Consensus 250 ~~~~~~--------------------------------------------------------~~~~~~~l~~~l~~~--~ 271 (354)
...+.. ...|...+.+++... .
T Consensus 261 ~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 261 NVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHcc
Confidence 111111 112344444555433 4
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC-CCeEEEeecCCCHHHHHHHHHHHhCC-CCc-EEEEccccccCCCcCCCcEEEecC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSG-TTR-VLITTDVWARGLDVQQAILFFFLF 348 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~~~~Gidi~~~~~Vi~~~ 348 (354)
+.++||||++.+.++.++..|+.. ++.+..+||+++..+|.++++.|++| +.+ +|++|.++++|+|+|.+++||++|
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 579999999999999999999875 89999999999999999999999988 455 789999999999999999999999
Q ss_pred CCCCC
Q 018574 349 LFCNV 353 (354)
Q Consensus 349 ~p~s~ 353 (354)
.|+|+
T Consensus 421 ~~~~~ 425 (500)
T 1z63_A 421 RWWNP 425 (500)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 99996
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.98 E-value=1.2e-32 Score=256.79 Aligned_cols=261 Identities=17% Similarity=0.165 Sum_probs=175.2
Q ss_pred HHHCCCC-----CChHHHH-----HhHhhhh------cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 48 IYQYGFE-----KPSAIQQ-----RAVMPII------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 48 l~~~~~~-----~~~~~Q~-----~~~~~~~------~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
+...||. .|++.|. ++++.++ +++++++.+|||+|||.+|+++++..+... +.+++|++|++
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPTr 280 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPTR 280 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESSH
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccHH
Confidence 4445555 8999999 9998888 899999999999999999999998876543 45799999999
Q ss_pred HHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC
Q 018574 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (354)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~ 191 (354)
+|+.|+.+.++.+. +. ... +. .. ..-..+..+-+.+.+.+.+.+... ..+.++++||+||+|++ +..
T Consensus 281 ~La~Q~~~~l~~~~----i~--~~~-~~-l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~ 347 (673)
T 2wv9_A 281 VVAAEMAEALRGLP----VR--YLT-PA-VQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPA 347 (673)
T ss_dssp HHHHHHHHHTTTSC----CE--ECC-C-------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHH
T ss_pred HHHHHHHHHHhcCC----ee--eec-cc-cc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Ccc
Confidence 99999999886442 21 100 00 00 000111233344555554444432 45678999999999998 222
Q ss_pred cHHHHHHHHhhC-CCCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC
Q 018574 192 FKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (354)
Q Consensus 192 ~~~~~~~i~~~~-~~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 270 (354)
+...+..+.... +.+.|+++||||+++....+... ..+.. ... ...+... ....+. .+..
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~-------------~~~~~~~-~~~~l~-~l~~- 408 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVS-------------SEIPDRA-WSSGFE-WITD- 408 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEE-------------CCCCSSC-CSSCCH-HHHS-
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EEe-------------eecCHHH-HHHHHH-HHHh-
Confidence 222232333332 26789999999998653221110 01111 000 0011111 111112 2222
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEec
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFL 347 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~ 347 (354)
..+++||||++++.++.+++.|++.++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEEC
Confidence 45799999999999999999999999999999994 788899999999999999999999999999 9999983
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.98 E-value=9.5e-34 Score=253.99 Aligned_cols=233 Identities=13% Similarity=0.144 Sum_probs=151.6
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhH
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (354)
.+++|+++++.+|||||||.+|+++++..+... +.+++|++|+++|+.|+++.+..+. +. ...+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~~----v~--~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGLD----VK--FHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTSC----EE--EESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcCC----eE--Eecccce-----
Confidence 467899999999999999999999998876543 4579999999999999999886432 22 1111100
Q ss_pred HhhcCCCeEEEeCcHHH---------HHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhC-CCCCcEEEEEee
Q 018574 146 RKLEHGVHVVSGTPGRV---------CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISAT 215 (354)
Q Consensus 146 ~~~~~~~~iiv~T~~~l---------~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~lSaT 215 (354)
.++||+.+ ...+. ....+.++++||+||+|++ +..+...+..+.... +.+.|+++||||
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT 139 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTAT 139 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred ---------eccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCC
Confidence 14444333 22222 2344678999999999998 333222222222222 367899999999
Q ss_pred CchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcC
Q 018574 216 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGY 295 (354)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 295 (354)
+++....+... ..+.... ...++... ....+ ..+... .+++||||++++.++.+++.|++.
T Consensus 140 ~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~-~~~~~-~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 140 PPGTSDEFPHS--NGEIEDV--------------QTDIPSEP-WNTGH-DWILAD-KRPTAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp CTTCCCSSCCC--SSCEEEE--------------ECCCCSSC-CSSSC-HHHHHC-CSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CCchhhhhhhc--CCCeeEe--------------eeccChHH-HHHHH-HHHHhc-CCCEEEEeCCHHHHHHHHHHHHHc
Confidence 97763322111 0111100 00011111 11111 122222 579999999999999999999999
Q ss_pred CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 296 NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 296 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 201 ~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 201 GKSVVVLNRK----TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp TCCEEECCSS----SCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred CCCEEEecch----hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 9999999993 578899999999999999999999999999 999997
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.98 E-value=9.6e-32 Score=240.57 Aligned_cols=237 Identities=13% Similarity=0.120 Sum_probs=160.1
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (354)
+|+++++.+|||+|||.+++++++..+... +.+++|++|+++|+.|+.+.+. ++.+....++... .-
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 368999999999999999988888555433 3579999999999999998775 2334333333111 11
Q ss_pred cCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhC-CCCCcEEEEEeeCchhHHHHHHhc
Q 018574 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKF 227 (354)
Q Consensus 149 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~lSaT~~~~~~~~~~~~ 227 (354)
..+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +..+......+.... +.+.+++++|||+++....+...
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~- 144 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS- 144 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC-
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC-
Confidence 12345666788877665554 445778999999999997 332233333333322 46899999999998742211100
Q ss_pred cCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCC
Q 018574 228 MTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMP 307 (354)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 307 (354)
..+.. .... ..+.. ....+...+... .+++||||+++++++.+++.|++.+.++..+||+
T Consensus 145 -~~~i~-~~~~-------------~~~~~--~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 145 -NSPII-DEET-------------RIPDK--AWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp -SSCCE-EEEC-------------CCCSS--CCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred -CCcee-eccc-------------cCCHH--HHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 01110 0000 01111 111122233333 5789999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEE
Q 018574 308 QKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILF 344 (354)
Q Consensus 308 ~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~V 344 (354)
+|.++++.|++|+.+|||||+++++|+|+| +.+|
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~V 238 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRV 238 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEE
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEE
Confidence 577899999999999999999999999999 6553
No 68
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=2e-31 Score=240.46 Aligned_cols=240 Identities=14% Similarity=0.162 Sum_probs=161.5
Q ss_pred HhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHH
Q 018574 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE 143 (354)
Q Consensus 64 ~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (354)
...+.+++++++.+|||+|||.+|+++++..+... +.++||++|+++|+.|+.+.+.. ..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR-- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTTT------SCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhcC------ceEeEEeccccc--
Confidence 34456689999999999999999999999876533 45799999999999999998862 222211111100
Q ss_pred hHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh-----hccCcHHHHHHHHhhCCCCCcEEEEEeeCch
Q 018574 144 DIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-----LSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (354)
Q Consensus 144 ~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~-----~~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~ 218 (354)
.-..+..+.+.|.+.+...+... ..+.++++||+||||++ ...++.... . ..++.|++++|||++.
T Consensus 85 ---~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~---~--~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 85 ---EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATK---V--ELGEAAAIFMTATPPG 155 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHH---H--HTTSCEEEEECSSCTT
T ss_pred ---CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHH---h--ccCCccEEEEEcCCCc
Confidence 01223456677887776655543 45678999999999983 333322221 1 1367899999999986
Q ss_pred hHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCe
Q 018574 219 EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT 298 (354)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 298 (354)
....+... ..+...... ..+.. ....+...+... .+++||||++++.++.+++.|++.++.
T Consensus 156 ~~~~~~~~--~~pi~~~~~--------------~~~~~--~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~ 216 (459)
T 2z83_A 156 TTDPFPDS--NAPIHDLQD--------------EIPDR--AWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGKK 216 (459)
T ss_dssp CCCSSCCC--SSCEEEEEC--------------CCCSS--CCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred chhhhccC--CCCeEEecc--------------cCCcc--hhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCCc
Confidence 53221110 112211100 00000 000111222222 579999999999999999999999999
Q ss_pred EEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEe
Q 018574 299 VSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFF 346 (354)
Q Consensus 299 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~ 346 (354)
+..+|++ +|.++++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 217 v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 217 VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp EEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEE
T ss_pred EEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEE
Confidence 9999985 5678899999999999999999999999999 99999
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=243.53 Aligned_cols=291 Identities=16% Similarity=0.192 Sum_probs=201.8
Q ss_pred CChHHHHHhHhhhh----cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
+|++||.+++.++. .++++++..+||+|||..++..+...+.......++||||| .+++.||.+++.++.. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 68999999998776 68899999999999998887777665544334456999999 7889999999999874 35
Q ss_pred EEEEEeCCcchHHhHHh------------hcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHH
Q 018574 131 QAHACVGGKSVGEDIRK------------LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~------------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~ 198 (354)
++...+|+......... ....++|+|+|++.+..... .+....+++||+||||++.+.. .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCch--hHHHH
Confidence 66666666554433222 12347899999999976433 2233478999999999996543 23333
Q ss_pred HHhhCCCCCcEEEEEeeCch----hHHHHHHhccCC-----------------------------CeEEEecCCcc--cc
Q 018574 199 VYRYLPPDLQVVLISATLPH----EILEMTTKFMTD-----------------------------PVKILVKRDEL--TL 243 (354)
Q Consensus 199 i~~~~~~~~~~i~lSaT~~~----~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~ 243 (354)
.+..+ .....+++||||.+ ++..++..+... +..+....... ..
T Consensus 389 ~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 44444 34567999999832 222222211111 00000000000 01
Q ss_pred cCceeEEEEecc--------------------------------------------------------------------
Q 018574 244 EGIKQFFVAVER-------------------------------------------------------------------- 255 (354)
Q Consensus 244 ~~~~~~~~~~~~-------------------------------------------------------------------- 255 (354)
+........+..
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 111111111100
Q ss_pred ------ccchHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCC---c
Q 018574 256 ------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT---R 324 (354)
Q Consensus 256 ------~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~ 324 (354)
...|+..+.+++... .+.++||||+....++.+...|...|+.+..++|+++..+|.++++.|+++.. .
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 112445555666543 35699999999999999999999999999999999999999999999998654 4
Q ss_pred EEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 325 VLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 325 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+|++|.++++|+|++.+++||+||.|+|+
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp 656 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNP 656 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCS
T ss_pred EEEecccccCCCCccccceEEEecCCCCh
Confidence 89999999999999999999999999997
No 70
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=7.6e-29 Score=232.36 Aligned_cols=292 Identities=16% Similarity=0.146 Sum_probs=195.5
Q ss_pred CChHHHHHhHhhhh---------cCCcEEEEcCCCCchhhHhHHHHhhccccCC----CceeEEEEcCCHHHHHHHHHHH
Q 018574 55 KPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~---------~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~l~~q~~~~~ 121 (354)
.|+|||.+++.++. .+.++++..+||+|||..++..+...+.... ...++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999874 3567899999999999988877766554332 22468999996 8999999999
Q ss_pred HHhccCcCeEEEEEeCCcchH--HhHHhh-c-----CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcH
Q 018574 122 LAIGDFINIQAHACVGGKSVG--EDIRKL-E-----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (354)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-----~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~ 193 (354)
.++... .+.+..+.++.... ...... . ...+|+|+|++.+.... ..+....+++||+||||++.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-h
Confidence 998644 45555555554322 111121 1 24789999999887543 24445678999999999986543 2
Q ss_pred HHHHHHHhhCCCCCcEEEEEeeCchhH----HH---------------HHHhccC-------------------------
Q 018574 194 DQIYDVYRYLPPDLQVVLISATLPHEI----LE---------------MTTKFMT------------------------- 229 (354)
Q Consensus 194 ~~~~~i~~~~~~~~~~i~lSaT~~~~~----~~---------------~~~~~~~------------------------- 229 (354)
.....+ ..+ .....+++||||.+.. .. +...+..
T Consensus 210 ~~~~al-~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 QTYLAL-NSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHHHHH-HHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHH-Hhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 222222 223 3557899999984321 00 0000000
Q ss_pred ----CCeEEEecCCcc--cccCceeEEEEec-------------------------------------------------
Q 018574 230 ----DPVKILVKRDEL--TLEGIKQFFVAVE------------------------------------------------- 254 (354)
Q Consensus 230 ----~~~~~~~~~~~~--~~~~~~~~~~~~~------------------------------------------------- 254 (354)
.+..+.-..... ..+........+.
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 000000000000 0000000000000
Q ss_pred ----------------------------cccchHHHHHHHHhh---CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEee
Q 018574 255 ----------------------------REEWKFDTLCDLYDT---LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMH 303 (354)
Q Consensus 255 ----------------------------~~~~~~~~l~~~l~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~ 303 (354)
....|...+..++.. ..+.++||||++.+.++.+...|...++.+..+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 011233344444433 3468999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhCCCCc---EEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 304 GDMPQKERDAIMGEFRSGTTR---VLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 304 ~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+++..+|.++++.|++|+.. +|++|.++++|+|++++++||+||.|+|+
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp 500 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 500 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSH
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCc
Confidence 999999999999999998764 88999999999999999999999999986
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.3e-29 Score=244.93 Aligned_cols=284 Identities=10% Similarity=0.057 Sum_probs=185.8
Q ss_pred CChHHHHHhHhhhhc--------------CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIK--------------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~--------------~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 120 (354)
.|+++|.++++.+++ +++++++++||||||.++ +++...+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998875 368999999999999987 55555554333345899999999999999999
Q ss_pred HHHhccCcCeEEEEEeCCcchHHhHHhh-cCCCeEEEeCcHHHHHHHhcCC--ccCCCccEEEEecchhhhccCcHHHHH
Q 018574 121 ILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIY 197 (354)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vvvDE~h~~~~~~~~~~~~ 197 (354)
+..+... .+.++.+.......+ ..+++|+|+|+++|...+.... .....+.+||+||||++.. .....
T Consensus 350 f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~ 420 (1038)
T 2w00_A 350 YQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQK 420 (1038)
T ss_dssp HHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHH
T ss_pred HHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHH
Confidence 9887643 122333443433444 3468999999999988765432 1234678999999999753 23455
Q ss_pred HHHhhCCCCCcEEEEEeeCchh--------HHHHH-------------HhccCCCeEEEecCCcccc------------c
Q 018574 198 DVYRYLPPDLQVVLISATLPHE--------ILEMT-------------TKFMTDPVKILVKRDELTL------------E 244 (354)
Q Consensus 198 ~i~~~~~~~~~~i~lSaT~~~~--------~~~~~-------------~~~~~~~~~~~~~~~~~~~------------~ 244 (354)
.+...++ +.+++++||||... ..... ......|..+......... .
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 6666664 57899999999643 11211 1111112222111100000 0
Q ss_pred CceeEEEEeccccchHHHH-HHHHhhC-----------CCCcEEEEcCchhhHHHHHHHHhcCC------------CeE-
Q 018574 245 GIKQFFVAVEREEWKFDTL-CDLYDTL-----------TITQAVIFCNTKRKVDWLTEKMRGYN------------FTV- 299 (354)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l-~~~l~~~-----------~~~~~lvf~~~~~~~~~l~~~l~~~~------------~~~- 299 (354)
.+... ..+..+. .+..+ ..++... .+.++||||++++.|..+++.|.+.+ .++
T Consensus 500 ~i~~~-~~l~~~~-ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~a 577 (1038)
T 2w00_A 500 AAENQ-QAFLHPM-RIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIA 577 (1038)
T ss_dssp HTCST-TTTTCHH-HHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEE
T ss_pred HHHHH-HHhcCHH-HHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEE
Confidence 00000 0000111 12222 2232211 23589999999999999999997653 445
Q ss_pred EEeecC----------C----------CH-----------------------------HHHHHHHHHHhCCCCcEEEEcc
Q 018574 300 SSMHGD----------M----------PQ-----------------------------KERDAIMGEFRSGTTRVLITTD 330 (354)
Q Consensus 300 ~~~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vlv~T~ 330 (354)
.++|+. + ++ ..|..+++.|++|+.+|||+|+
T Consensus 578 vv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd 657 (1038)
T 2w00_A 578 TIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG 657 (1038)
T ss_dssp EECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS
T ss_pred EEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc
Confidence 345542 1 11 1377889999999999999999
Q ss_pred ccccCCCcCCCcEEEecCCCCC
Q 018574 331 VWARGLDVQQAILFFFLFLFCN 352 (354)
Q Consensus 331 ~~~~Gidi~~~~~Vi~~~~p~s 352 (354)
++.+|+|+|.+ +++++|.|.+
T Consensus 658 ~lltGfDiP~l-~tlylDkpl~ 678 (1038)
T 2w00_A 658 MFLTGFDAPTL-NTLFVDKNLR 678 (1038)
T ss_dssp TTSSSCCCTTE-EEEEEESCCC
T ss_pred hHHhCcCcccc-cEEEEccCCC
Confidence 99999999999 7889999865
No 72
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=3.6e-29 Score=232.64 Aligned_cols=247 Identities=15% Similarity=0.170 Sum_probs=179.7
Q ss_pred hhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh
Q 018574 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144 (354)
Q Consensus 65 ~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (354)
...++++++++.||||+|||..++..+.. .. ..+|++|+++|+.|+++.+... ++.+..+.|+.....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al~~l~~----~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv- 217 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAIQKYFS----AK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV- 217 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHHHHHHH----SS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC-
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHh----cC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe-
Confidence 34567889999999999999844433332 22 2599999999999999999876 467777888765411
Q ss_pred HHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCC-CCCcEEEEEeeCchhHHHH
Q 018574 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEM 223 (354)
Q Consensus 145 ~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~lSaT~~~~~~~~ 223 (354)
.......+++++|++.+. ....+++||+||+|++.+.+++..+..++..++ ...+++++|||.+ ....+
T Consensus 218 -~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l 287 (677)
T 3rc3_A 218 -QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMEL 287 (677)
T ss_dssp -STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHH
T ss_pred -cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHH
Confidence 000112678888876542 235679999999999988889999998888887 6788999999942 23333
Q ss_pred HHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEee
Q 018574 224 TTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMH 303 (354)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~ 303 (354)
... ......+......... . . ... .. ..+.... ...+|||++++.++.+++.|++.+..+..+|
T Consensus 288 ~~~-~~~~~~v~~~~r~~~l---~---~--~~~--~l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~lH 351 (677)
T 3rc3_A 288 MYT-TGEEVEVRDYKRLTPI---S---V--LDH--AL----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAVIY 351 (677)
T ss_dssp HHH-HTCCEEEEECCCSSCE---E---E--CSS--CC----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHh-cCCceEEEEeeecchH---H---H--HHH--HH----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeeeee
Confidence 322 2333333211110000 0 0 000 00 0112222 4568899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhC--CCCcEEEEccccccCCCcCCCcEEEecCCC
Q 018574 304 GDMPQKERDAIMGEFRS--GTTRVLITTDVWARGLDVQQAILFFFLFLF 350 (354)
Q Consensus 304 ~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p 350 (354)
|++++++|.++++.|++ |+.+|||||+++++|+|+ ++++||++|++
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred ccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 99999999999999999 889999999999999999 89999999994
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.96 E-value=3e-26 Score=208.12 Aligned_cols=290 Identities=12% Similarity=0.143 Sum_probs=203.3
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|.-..-.+.+|+ +..+.||+|||+++.+|++-....+ ..+.|++|+..|+.|-++.+..+...+|+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G---~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG---KGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC---CceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 566 78888887776666665 8899999999999999987555444 34999999999999999999999999999
Q ss_pred EEEEEeCCc--------------------------------------------------chHHhHHhhcCCCeEEEeCcH
Q 018574 131 QAHACVGGK--------------------------------------------------SVGEDIRKLEHGVHVVSGTPG 160 (354)
Q Consensus 131 ~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~iiv~T~~ 160 (354)
++..+.... +..+.... ..++|+++|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCEEccCc
Confidence 998887721 11111111 13899999998
Q ss_pred HH-HHHHhcC------CccCCCccEEEEecchhhhccC----------------cHHHHHHHHhhCCCC-----------
Q 018574 161 RV-CDMIKRK------TLRTRAIKLLVLDESDEMLSRG----------------FKDQIYDVYRYLPPD----------- 206 (354)
Q Consensus 161 ~l-~~~~~~~------~~~~~~~~~vvvDE~h~~~~~~----------------~~~~~~~i~~~~~~~----------- 206 (354)
.| .++++.. ......+.+.||||+|.++-.. +...+..+.+.+..+
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 77 3444432 2234678999999999864111 112222222222100
Q ss_pred --------------------------------------------------------------------------------
Q 018574 207 -------------------------------------------------------------------------------- 206 (354)
Q Consensus 207 -------------------------------------------------------------------------------- 206 (354)
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence
Q ss_pred --------------------------CcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchH
Q 018574 207 --------------------------LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (354)
Q Consensus 207 --------------------------~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (354)
.++.+||+|...+..++.+.+..+ .+.+ +.........+..........+.
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~I-Ptnkp~~R~d~~d~vy~t~~eK~ 460 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVI-PTHKPMIRKDHDDLVFRTQKEKY 460 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEEC-CCSSCCCCEECCCEEESSHHHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEE-CCCCCcceeecCcEEEecHHHHH
Confidence 579999999998877776666443 2222 22222222222212223344477
Q ss_pred HHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCc
Q 018574 261 DTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDV 338 (354)
Q Consensus 261 ~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 338 (354)
..+...+... .+.++||||+|++.++.++..|++.|+++..+||+....++..+.+.++. ..|+|||+++++|+|+
T Consensus 461 ~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~VtVATdmAgRGtDI 538 (822)
T 3jux_A 461 EKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GMVTIATNMAGRGTDI 538 (822)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TCEEEEETTTTTTCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--CeEEEEcchhhCCcCc
Confidence 7777776643 45799999999999999999999999999999998544444444445544 4799999999999999
Q ss_pred C--------CCcEEEecCCCCCC
Q 018574 339 Q--------QAILFFFLFLFCNV 353 (354)
Q Consensus 339 ~--------~~~~Vi~~~~p~s~ 353 (354)
+ +..+||++++|.|.
T Consensus 539 ~lg~~V~~~GglhVInte~Pes~ 561 (822)
T 3jux_A 539 KLGPGVAELGGLCIIGTERHESR 561 (822)
T ss_dssp CCCTTTTTTTSCEEEESSCCSSH
T ss_pred cCCcchhhcCCCEEEecCCCCCH
Confidence 8 56699999999874
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.2e-23 Score=194.53 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=110.6
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
.|+ .|++.|..++..+++|+ +..+.||+|||.++.+|++.....+ ..++|++||+.|+.|.++.+..+...+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G---~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG---KGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC---SCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC---CCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 788 99999999999999998 8999999999999999996444433 35999999999999999999999999999
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHH-HHHHhcCC------ccCC---CccEEEEecchhhh
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTR---AIKLLVLDESDEML 188 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l-~~~~~~~~------~~~~---~~~~vvvDE~h~~~ 188 (354)
++..+.|+.+...... ..+++|+|+||+.+ .++++... +.++ .+.++|+||+|.++
T Consensus 150 sv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999887543333 34689999999999 67776542 4556 89999999999986
No 75
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=2.5e-25 Score=181.37 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=118.0
Q ss_pred CCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC---CCceeEEEEcCCHHHHHH-HHHHHHHhcc
Q 018574 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQ-TEKVILAIGD 126 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l~~q-~~~~~~~~~~ 126 (354)
.....|+++|.++++.+++++++++.+|||+|||.+++.++...+... ..+.++||++|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344589999999999999999999999999999999999988766432 234579999999999999 8888888765
Q ss_pred CcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCC------ccCCCccEEEEecchhhhccCcHHH-HHHH
Q 018574 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT------LRTRAIKLLVLDESDEMLSRGFKDQ-IYDV 199 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~------~~~~~~~~vvvDE~h~~~~~~~~~~-~~~i 199 (354)
. ++.+..+.++............+++|+|+||+.+...+.... ..+.++++||+||||++...++... +..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 567777777765554444444468999999999998877643 4567889999999999976644333 3333
Q ss_pred HhhC-------------CCCCcEEEEEee
Q 018574 200 YRYL-------------PPDLQVVLISAT 215 (354)
Q Consensus 200 ~~~~-------------~~~~~~i~lSaT 215 (354)
+... .+..+++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2221 156899999998
No 76
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=1.9e-23 Score=176.88 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=123.6
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.|+++|.++++.++++++.++.+|||+|||.+++.++...+... ..++||++|+++|+.||.+++.+++......+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 89999999999999888899999999999999988877665433 2369999999999999999999988666667777
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEe
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
+.++..... ......+|+|+|++.+.+. ......++++||+||||++.. ..+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 777654432 2234589999999877443 223456789999999999853 467778888877899999999
Q ss_pred eCchhH
Q 018574 215 TLPHEI 220 (354)
Q Consensus 215 T~~~~~ 220 (354)
|++...
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 997653
No 77
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.89 E-value=2.9e-21 Score=180.94 Aligned_cols=136 Identities=21% Similarity=0.189 Sum_probs=98.9
Q ss_pred CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhC--CCCcEEEEcCch
Q 018574 205 PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTK 282 (354)
Q Consensus 205 ~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~ 282 (354)
...|++++|||++...... ................+ . ..+.....+...+...+... .+.++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~-i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP----L-VRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC----E-EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC----e-EEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3578999999998653222 01111111111111111 1 11222222444444444322 457999999999
Q ss_pred hhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC
Q 018574 283 RKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL 349 (354)
Q Consensus 283 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 349 (354)
+.++.+++.|.+.++.+..+||+++..+|.++++.|+.|+.+|||||+++++|+|+|++++||++|.
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 78
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.6e-22 Score=185.71 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCCCCChHHHHHhHhh----hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
.|+ .|+++|.+++.. +..++++++.+|||+|||.+|++|++.. +.+++|++||++|+.|+.+++..+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l~- 75 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLLG- 75 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGGT-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhcC-
Confidence 466 899999998654 4568999999999999999999998753 3579999999999999998887642
Q ss_pred CcCeEEEEEeCCcch--------H------------------------Hh---------------HHhhcCCCeEEEeCc
Q 018574 127 FINIQAHACVGGKSV--------G------------------------ED---------------IRKLEHGVHVVSGTP 159 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~--------~------------------------~~---------------~~~~~~~~~iiv~T~ 159 (354)
+++..+.|.... . +. .......++|+|+|+
T Consensus 76 ---~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 76 ---LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp ---CCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred ---CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 333333322110 0 00 011123479999999
Q ss_pred HHHHHHHhcCCc-------cCCCccEEEEecchhhh
Q 018574 160 GRVCDMIKRKTL-------RTRAIKLLVLDESDEML 188 (354)
Q Consensus 160 ~~l~~~~~~~~~-------~~~~~~~vvvDE~h~~~ 188 (354)
+.+.+......+ ......++||||||++.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999864332221 23467899999999983
No 79
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=6e-21 Score=176.02 Aligned_cols=280 Identities=14% Similarity=0.123 Sum_probs=178.5
Q ss_pred CChHHHHHhHhhh----hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~----~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
++|++|.+.+..+ ..|+++++.+|||+|||.+|++|++. .+.+++|++||++|+.|+.+.+..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 7899999877654 46899999999999999999999987 2457999999999999999999888776677
Q ss_pred EEEEEeCCcch---------------------------------HHhH------------------HhhcCCCeEEEeCc
Q 018574 131 QAHACVGGKSV---------------------------------GEDI------------------RKLEHGVHVVSGTP 159 (354)
Q Consensus 131 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~iiv~T~ 159 (354)
++..+.|..+. .... ......++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77777664321 0001 12234589999999
Q ss_pred HHHHHHHhcCCcc-CCCccEEEEecchhhhccC-----------------------------------------------
Q 018574 160 GRVCDMIKRKTLR-TRAIKLLVLDESDEMLSRG----------------------------------------------- 191 (354)
Q Consensus 160 ~~l~~~~~~~~~~-~~~~~~vvvDE~h~~~~~~----------------------------------------------- 191 (354)
..|.+......+. .....++||||||++.+ .
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9998764433332 24668899999998765 2
Q ss_pred --------cHHHHH----------------------------HHH----------------------------hhCCCC-
Q 018574 192 --------FKDQIY----------------------------DVY----------------------------RYLPPD- 206 (354)
Q Consensus 192 --------~~~~~~----------------------------~i~----------------------------~~~~~~- 206 (354)
+...+. .++ +.+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 000000 000 001122
Q ss_pred CcEEEEEeeCchhHHHHHHhccCCC--eEE---Eec-CCcccccCceeEEEEe--cc--c---cchHHH----HHHHHhh
Q 018574 207 LQVVLISATLPHEILEMTTKFMTDP--VKI---LVK-RDELTLEGIKQFFVAV--ER--E---EWKFDT----LCDLYDT 269 (354)
Q Consensus 207 ~~~i~lSaT~~~~~~~~~~~~~~~~--~~~---~~~-~~~~~~~~~~~~~~~~--~~--~---~~~~~~----l~~~l~~ 269 (354)
..+|++|||+.+ ...+.. .++-+ ... ... .... ..-...+... +. . ...... +..++..
T Consensus 316 ~svIltSaTL~~-~~~~~~-~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 316 LSIILMSGTLPP-REYMEK-VWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp CEEEEEESSCCC-HHHHHH-TSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCc-HHHHHH-HhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 678999999976 233333 33322 210 001 1111 1112222221 11 0 001222 2333333
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEc--cccccCCCcC-----CCc
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT--DVWARGLDVQ-----QAI 342 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T--~~~~~Gidi~-----~~~ 342 (354)
..+.++||++|...++.+++. .+.++..-..+++ +.+.++.|+.....||+++ ..+++|+|+| .++
T Consensus 392 -~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~ 464 (551)
T 3crv_A 392 -AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLIS 464 (551)
T ss_dssp -CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEE
T ss_pred -CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCccee
Confidence 347899999999999999873 3444443333333 4557778854445899998 6999999999 589
Q ss_pred EEEecCCCCC
Q 018574 343 LFFFLFLFCN 352 (354)
Q Consensus 343 ~Vi~~~~p~s 352 (354)
+||..++|--
T Consensus 465 ~viI~~lPfp 474 (551)
T 3crv_A 465 DVVIVGIPYP 474 (551)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEcCCCC
Confidence 9999999964
No 80
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=9.2e-22 Score=161.86 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=124.7
Q ss_pred HHCCCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCC--ceeEEEEcCCHHHHHHHHHHHHHhcc
Q 018574 49 YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGD 126 (354)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (354)
.......++++|.++++.+.+|+++++.||||+|||+++..+++........ +.+++++.|+++++.|+.+.+.....
T Consensus 55 ~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 55 QERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp HHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred HHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 3333447899999999999999999999999999999888888776554332 45799999999999999888875432
Q ss_pred -CcCeEEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhh-hccCcH-HHHHHHHhhC
Q 018574 127 -FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGFK-DQIYDVYRYL 203 (354)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~-~~~~~~-~~~~~i~~~~ 203 (354)
..+..+........ .....+++|+|+||+++.+.+.. .+.++++||+||+|.+ .+.++. ..+..+....
T Consensus 135 ~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 135 EEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp CCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred cccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 22333322111111 01124588999999999988875 3678999999999985 555555 4666666665
Q ss_pred CCCCcEEEEEeeCchhHHHHHHhccCCC
Q 018574 204 PPDLQVVLISATLPHEILEMTTKFMTDP 231 (354)
Q Consensus 204 ~~~~~~i~lSaT~~~~~~~~~~~~~~~~ 231 (354)
++.|++++|||++.+. +...+...+
T Consensus 207 -~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 207 -PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp -TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred -CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 5789999999998875 444444433
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.86 E-value=9.1e-20 Score=170.74 Aligned_cols=139 Identities=21% Similarity=0.267 Sum_probs=101.3
Q ss_pred CCCcEEEEEeeCchhHHHHHHhccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhh-C-CCCcEEEEcCch
Q 018574 205 PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT-L-TITQAVIFCNTK 282 (354)
Q Consensus 205 ~~~~~i~lSaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~lvf~~~~ 282 (354)
...|++++|||++...... ................+ . ..+.....+...+...+.. . .+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~-i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP----L-IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC----E-EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC----e-EEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3678999999997654222 11111111111111111 1 1122222244444443432 2 457999999999
Q ss_pred hhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCC-----CCC
Q 018574 283 RKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFL-----FCN 352 (354)
Q Consensus 283 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~-----p~s 352 (354)
+.++.+++.|++.|+++..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++|. |.|
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s 530 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 530 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTS
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 765
No 82
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.86 E-value=4.5e-21 Score=157.44 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=108.4
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeE-EE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (354)
.|+++|.+++..+++++++++.+|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 6899999999999999899999999999999888777654 346999999999999999998774 456 66
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
.+.++... ..+|+|+|++.+...... ...++++||+||+|++.+..+.. +...+ ...+++++|
T Consensus 163 ~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~~----i~~~~-~~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (237)
T ss_dssp EESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHHH----HHHTC-CCSEEEEEE
T ss_pred EEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHHH----HHHhc-cCCEEEEEe
Confidence 66665532 478999999988765542 12468999999999997765443 44444 467889999
Q ss_pred eeCchh
Q 018574 214 ATLPHE 219 (354)
Q Consensus 214 aT~~~~ 219 (354)
||+...
T Consensus 226 ATp~r~ 231 (237)
T 2fz4_A 226 ATFERE 231 (237)
T ss_dssp ESCC--
T ss_pred cCCCCC
Confidence 999754
No 83
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=1.4e-19 Score=139.95 Aligned_cols=112 Identities=34% Similarity=0.523 Sum_probs=103.8
Q ss_pred ccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhC
Q 018574 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRS 320 (354)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 320 (354)
...+++.+.+..++... |...+..++.....+++||||++++.++.+++.|++.++.+..+||++++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREEN-KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGG-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHH-HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34567888888887655 99999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 321 GTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 321 g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|+.+|||+|+++++|+|+|++++||+||+|+|+
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~ 116 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEK 116 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSH
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCH
Confidence 999999999999999999999999999999885
No 84
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.82 E-value=1.4e-19 Score=141.15 Aligned_cols=110 Identities=29% Similarity=0.501 Sum_probs=102.1
Q ss_pred ccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCC
Q 018574 243 LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 322 (354)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 322 (354)
..++.+++..++... +...+..+++....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGG-HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHH-HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 456788888877655 9999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 323 TRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 323 ~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
.+|||||+++++|+|+|++++||+||+|+|+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~ 112 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDS 112 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSH
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCH
Confidence 9999999999999999999999999999985
No 85
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.82 E-value=3e-19 Score=138.44 Aligned_cols=110 Identities=59% Similarity=0.921 Sum_probs=102.8
Q ss_pred cCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCC
Q 018574 244 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTT 323 (354)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 323 (354)
.++.+.+..++....|...+..+++....+++||||++++.++.++..|++.++.+..+||++++.+|.++++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35778888888777799999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 324 RVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 324 ~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+|||||+++++|+|+|++++||++|+|+|+
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~ 111 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANK 111 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSG
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCH
Confidence 999999999999999999999999999985
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=143.48 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=100.9
Q ss_pred hccCCCeEEEecCCcccccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecC
Q 018574 226 KFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGD 305 (354)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 305 (354)
.++.+|..+.+........++.+.+..++... +...+.+++.... +++||||++++.++.+++.|+..++.+..+||+
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEA-KMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ------------------CCSEEEEEECCGGG-HHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHH-HHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 35666777777666667788899888877665 9999999998754 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 306 MPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 306 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
+++.+|.++++.|++|+.+|||+|+++++|+|+|++++||+||+|+|+
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~ 135 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEI 135 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCH
Confidence 999999999999999999999999999999999999999999999985
No 87
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=139.47 Aligned_cols=110 Identities=40% Similarity=0.723 Sum_probs=104.1
Q ss_pred cccCceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCC
Q 018574 242 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSG 321 (354)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 321 (354)
...++.+.+..++....+...+..+++....+++||||++++.++.++..|.+.++.+..+||++++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45678899998887777999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCcCCCcEEEecCCCC
Q 018574 322 TTRVLITTDVWARGLDVQQAILFFFLFLFC 351 (354)
Q Consensus 322 ~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~ 351 (354)
+.+|||||+++++|+|+|++++||+||+|+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~ 113 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPV 113 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCC
Confidence 999999999999999999999999999994
No 88
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.80 E-value=2.9e-18 Score=159.26 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=65.4
Q ss_pred CChHHHHHhHhhh----hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCe
Q 018574 55 KPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~----~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (354)
+|++.|.+.+..+ .+|+++++.+|||+|||.+|+.|++..+... +.+++|++||++++.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 6899999888644 4689999999999999999999999887542 357999999999999999999887755456
Q ss_pred EEEEEeC
Q 018574 131 QAHACVG 137 (354)
Q Consensus 131 ~~~~~~~ 137 (354)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555544
No 89
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=138.45 Aligned_cols=113 Identities=31% Similarity=0.439 Sum_probs=89.4
Q ss_pred cccccCceeEEEEeccccchHHHHHHHHhhC-CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHH
Q 018574 240 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF 318 (354)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 318 (354)
....+++.+.+..++... |...+.+++... ..+++||||++++.++.++..|+..++.+..+||++++.+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~~~~-K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECCGGG-HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeCcHH-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 345678888888887665 999999999887 467999999999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 319 RSGTTRVLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 319 ~~g~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
++|+.+|||||+++++|+|+|++++||++|+|+|+
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~ 127 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDI 127 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCH
Confidence 99999999999999999999999999999999885
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.76 E-value=5.2e-18 Score=136.77 Aligned_cols=106 Identities=30% Similarity=0.462 Sum_probs=97.1
Q ss_pred eeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEE
Q 018574 247 KQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVL 326 (354)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 326 (354)
.+.+...+.. .+...+..++.....+++||||++++.++.++..|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 7 ~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVR-GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTT-SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHH-HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 3444444444 499999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCcCCCcEEEecCCCCCC
Q 018574 327 ITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 327 v~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|||+++++|+|+|++++||++|+|+|+
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~ 112 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRA 112 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSH
T ss_pred EecChhhcCCCCccCcEEEECCCCcCH
Confidence 999999999999999999999999874
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.75 E-value=1.3e-17 Score=140.70 Aligned_cols=107 Identities=31% Similarity=0.471 Sum_probs=100.0
Q ss_pred ceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcE
Q 018574 246 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRV 325 (354)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 325 (354)
+.+++..++... +...+..++.....+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~~~-K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPVRG-RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCSSS-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCHHH-HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 456666666655 9999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 326 LITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 326 lv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
||||+++++|+|+|++++||++|+|+|+
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~ 109 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRA 109 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSST
T ss_pred EEEechhhcCccccceeEEEEcCCCCCH
Confidence 9999999999999999999999999986
No 92
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.57 E-value=2.6e-19 Score=139.43 Aligned_cols=109 Identities=24% Similarity=0.365 Sum_probs=100.0
Q ss_pred CceeEEEEeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCc
Q 018574 245 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTR 324 (354)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 324 (354)
++.+.+..++....+...+..+++....+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45667777766455888999999887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCcCCCcEEEecCCCCCC
Q 018574 325 VLITTDVWARGLDVQQAILFFFLFLFCNV 353 (354)
Q Consensus 325 vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~ 353 (354)
|||||+++++|+|+|++++||++|+|+|+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~ 111 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSG 111 (170)
Confidence 99999999999999999999999999886
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.54 E-value=3e-14 Score=118.74 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=89.2
Q ss_pred cchHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcC-CCeEEEeecCCCHHHHHHHHHHHhCC-CCc-EEEEccc
Q 018574 257 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGY-NFTVSSMHGDMPQKERDAIMGEFRSG-TTR-VLITTDV 331 (354)
Q Consensus 257 ~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~T~~ 331 (354)
..|...+.+++... .+.++||||++...++.+...|.+. |+.+..+||+++..+|.++++.|++| +.+ +|++|.+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 44888888888765 6789999999999999999999874 89999999999999999999999998 677 7889999
Q ss_pred cccCCCcCCCcEEEecCCCCCCC
Q 018574 332 WARGLDVQQAILFFFLFLFCNVF 354 (354)
Q Consensus 332 ~~~Gidi~~~~~Vi~~~~p~s~~ 354 (354)
+++|+|++.+++||+||+|+|+.
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~ 197 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPA 197 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTT
T ss_pred hcCCcCcccCCEEEEECCCCChh
Confidence 99999999999999999999973
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.93 E-value=3e-09 Score=98.86 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=88.1
Q ss_pred hHHHHHhHhhhhcCCcEEEEcCCCCchhhH--hHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSM--IALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~--~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.+.|..++..++.++.+++.|++|+|||++ ++++.+..+.. ..+.++++++||...+.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 688999999999999999999999999944 44444443321 234579999999999999988877654333321100
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEe
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
. .+.. .....+ ..++-.+++.. . ..........++++|+||++.+ + ...+..++..++.+.|++++.-
T Consensus 230 ~-~~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 K-KRIP--EDASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp C-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred H-hccc--hhhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcc
Confidence 0 0000 000000 11111122111 1 1111122237899999999954 3 4577888888888888888765
Q ss_pred e
Q 018574 215 T 215 (354)
Q Consensus 215 T 215 (354)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 5
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.76 E-value=1.3e-08 Score=95.68 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=56.2
Q ss_pred CChHHHHHhHhhhhcCC-cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~-~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.+++.|.+|+..++..+ -.+|+||+|+|||.+.+..+.+.+..+ .++|+++||..-++++.+.+....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 57899999999988654 679999999999988777766665543 469999999999999999887654
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.71 E-value=2.3e-07 Score=86.70 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=55.3
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
..+++.|.+++..++.+...+|.||+|+|||.+....+...+.. .+.++++++|+...++++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35789999999998888889999999999997765544433321 3457999999999999999888654
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2e-07 Score=89.15 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
..+++.|.+++..++.+...+|.||+|+|||.+....+...+.. .+.++++++|+...++++.+.+.+.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 35789999999999888889999999999997766554433321 23469999999999999999987753
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.63 E-value=3.1e-07 Score=84.56 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=81.3
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (354)
.+++.|.+++..+..++.+++.|++|+|||.+....+ ..+.. .+.++++++||...+..+.+... ....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~-~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~T 258 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVA-DLAES--LGLEVGLCAPTGKAARRLGEVTG-------RTAST 258 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHH-HHHHH--TTCCEEEEESSHHHHHHHHHHHT-------SCEEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHH-HHHHh--cCCeEEEecCcHHHHHHhHhhhc-------ccHHH
Confidence 6899999999999999999999999999997654433 33332 23569999999988887766442 11111
Q ss_pred EeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEe
Q 018574 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (354)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSa 214 (354)
++ . ...... + ...........+++||+||++.+ -...+..+++.++...+++++.-
T Consensus 259 ih------~-ll~~~~-------~------~~~~~~~~~~~~dvlIIDEasml----~~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 259 VH------R-LLGYGP-------Q------GFRHNHLEPAPYDLLIVDEVSMM----GDALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp HH------H-HTTEET-------T------EESCSSSSCCSCSEEEECCGGGC----CHHHHHHHHTTSCTTCEEEEEEC
T ss_pred HH------H-HHcCCc-------c------hhhhhhcccccCCEEEEcCccCC----CHHHHHHHHHhCcCCCEEEEEec
Confidence 10 0 000000 0 00111222346799999999987 34567777888877777666544
Q ss_pred e
Q 018574 215 T 215 (354)
Q Consensus 215 T 215 (354)
.
T Consensus 315 ~ 315 (574)
T 3e1s_A 315 T 315 (574)
T ss_dssp T
T ss_pred c
Confidence 3
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.61 E-value=2.9e-06 Score=80.06 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccC-CCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
..+++.|.+++.. ....++|.|++|||||.+.+.-+.+.+... .+..++|++++|+..+.++.+++....
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 367899999999999988887777666543 234579999999999999999998763
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.60 E-value=5.2e-07 Score=86.16 Aligned_cols=69 Identities=23% Similarity=0.219 Sum_probs=54.9
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
.+++.|.+++..++.+...+|.||+|+|||.+....+...+.. .+.++++++||...++++.+.+...+
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 5789999999998888889999999999997665544433321 34569999999999999998886543
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.59 E-value=2.5e-07 Score=83.35 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=79.6
Q ss_pred HHCCCCCChHHHHHhHhhhhcC-----CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 018574 49 YQYGFEKPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~~-----~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
.-..|..+++.|.+++..++.. ..+++.|++|+|||.+....+......+. ..+++++||...+..+.+.+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~~- 95 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSKLSG- 95 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHHS-
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhhc-
Confidence 3456778999999999876542 38999999999999755444433333322 358999999988877766551
Q ss_pred hccCcCeEEEEEeCCcchHHhHHhhc----CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHH
Q 018574 124 IGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (354)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i 199 (354)
....+++. ..... .....+.. .......++++||+||++.+. ...+..+
T Consensus 96 ------~~~~T~h~-------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l 148 (459)
T 3upu_A 96 ------KEASTIHS-------ILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKIL 148 (459)
T ss_dssp ------SCEEEHHH-------HHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHH
T ss_pred ------cchhhHHH-------HhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHH
Confidence 22222110 00000 00111110 112234568999999999762 3455566
Q ss_pred HhhCCCCCcEEEEE
Q 018574 200 YRYLPPDLQVVLIS 213 (354)
Q Consensus 200 ~~~~~~~~~~i~lS 213 (354)
...++...+++++.
T Consensus 149 ~~~~~~~~~~~~vG 162 (459)
T 3upu_A 149 LSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHSCTTCEEEEEE
T ss_pred HHhccCCCEEEEEC
Confidence 66666555555544
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.84 E-value=4.6e-05 Score=66.14 Aligned_cols=121 Identities=10% Similarity=0.148 Sum_probs=76.7
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC--e--
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--I-- 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~--~-- 130 (354)
.+.++|..++..+...+.+++..+-+.|||.+....++..+.. ..+..++++.|+...+..+.+.+..+....+ +
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~ 241 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhh
Confidence 7899999999876556778999999999998877776664443 2456799999999988888777766543221 1
Q ss_pred EEEEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhc
Q 018574 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~ 189 (354)
..... ... ...+.++..+.+.+.. - ..++ ....+++|+||+|...+
T Consensus 242 ~~~~~-~~~-----~I~f~nGs~i~~lsa~-~-~slr-----G~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 242 GIVEW-NKG-----SIELDNGSSIGAYASS-P-DAVR-----GNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CEEEE-CSS-----EEEETTSCEEEEEECS-H-HHHH-----TSCCSEEEEESGGGSTT
T ss_pred hhccC-Ccc-----EEEeCCCCEEEEEECC-C-CCcc-----CCCCCEEEechhhhcCC
Confidence 11111 000 0112344555443321 0 1111 23468899999998753
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.81 E-value=8.6e-05 Score=65.26 Aligned_cols=108 Identities=19% Similarity=0.067 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (354)
+-.++.|++|+|||..+.-.+. . .+.+|++|+++++..|.+.+.+.+. ..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~-----~---~~~lVlTpT~~aa~~l~~kl~~~~~----------------------~~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN-----F---EEDLILVPGRQAAEMIRRRANASGI----------------------IV 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC-----T---TTCEEEESCHHHHHHHHHHHTTTSC----------------------CC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-----c---CCeEEEeCCHHHHHHHHHHhhhcCc----------------------cc
Confidence 3468999999999975543321 1 2379999999999999888743210 00
Q ss_pred CCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 151 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
....-+.|.++++. ..........++|||||+-.+ .. ..+..++...+. .+++++.-+
T Consensus 212 ~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 11223556655432 212222234799999999855 22 334444444433 445544433
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.74 E-value=0.00033 Score=65.00 Aligned_cols=148 Identities=12% Similarity=0.164 Sum_probs=89.1
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcC--eEE
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~--~~~ 132 (354)
.++++|..++..+...+..++..+-|+|||.+....++..+... ++..++++.|+...+..+.+.++.+....+ +..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 57999999998775567899999999999988776666555443 355799999999999988888877654432 111
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeC--cHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCC-CCcE
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGT--PGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQV 209 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T--~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~-~~~~ 209 (354)
....... ....+.++..+.+.+ +..+ + ..+.+++|+||+|..... ...+..+...+.. ....
T Consensus 242 ~~~~~~~----~~i~~~nGs~i~~~s~~~~~l----r-----G~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ 306 (592)
T 3cpe_A 242 GIVEWNK----GSIELDNGSSIGAYASSPDAV----R-----GNSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSK 306 (592)
T ss_dssp CEEEECS----SEEEETTSCEEEEEECCHHHH----H-----HSCCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCE
T ss_pred ccccCCc----cEEEecCCCEEEEEeCCCCCc----c-----CCCcceEEEehhccCCch--hHHHHHHHHHhccCCCce
Confidence 0000000 001123455554443 2222 1 124678999999987442 2333333333322 1234
Q ss_pred EEEEeeCch
Q 018574 210 VLISATLPH 218 (354)
Q Consensus 210 i~lSaT~~~ 218 (354)
+++..|+..
T Consensus 307 ii~isTP~~ 315 (592)
T 3cpe_A 307 IIITTTPNG 315 (592)
T ss_dssp EEEEECCCT
T ss_pred EEEEeCCCC
Confidence 555566643
No 105
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.58 E-value=0.0001 Score=69.79 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=61.6
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhccC---cCe
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDF---INI 130 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~~~---~~~ 130 (354)
.+++-|.+++... +.+++|.|++|||||.+.+.-+...+.. +....++|+++.|+..+.++.+++...... .++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 4789999999763 6789999999999998887777666654 334457999999999999999999876432 235
Q ss_pred EEEEEe
Q 018574 131 QAHACV 136 (354)
Q Consensus 131 ~~~~~~ 136 (354)
.+.+++
T Consensus 80 ~v~Tfh 85 (673)
T 1uaa_A 80 MISTFH 85 (673)
T ss_dssp EEEEHH
T ss_pred EEEeHH
Confidence 555544
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.58 E-value=0.00022 Score=55.17 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~ 90 (354)
.|+.+++.||+|+|||..+-..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3788999999999999655443
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.41 E-value=7.6e-05 Score=58.01 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
|+-.++.+|+|+|||+.++..+......+ .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeecc
Confidence 55678999999999987766655544333 3588888874
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.38 E-value=0.0004 Score=54.12 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
|+-.++.+|+|+|||+..+-.+......+ .+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEecc
Confidence 55678999999999987776666554433 4589998874
No 109
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.34 E-value=0.00044 Score=65.82 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhcccc-CCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
..+++.|.+++.. ...+++|.|+.|||||.+...-+.+.+.. +-...++|+++.|+..+.++.+++....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999976 35689999999999998888777776654 3244579999999999999999887753
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.29 E-value=0.0012 Score=51.06 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
++-.++.+|+|+|||.-.+..+.....++ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 56679999999999977776666665544 458999886
No 111
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.27 E-value=0.00048 Score=69.52 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=56.8
Q ss_pred CChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCC---CceeEEEEcCCHHHHHHHHHHHHH
Q 018574 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
++++-|.+++..- +++++|.|+.|||||.+.+.-+...+..+. ...+++++++|++.+..+.+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6899999999764 789999999999999988888787776643 445799999999999999888765
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0029 Score=53.37 Aligned_cols=40 Identities=10% Similarity=0.258 Sum_probs=24.2
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhh---CCCCCcEEEEEeeCc
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRY---LPPDLQVVLISATLP 217 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~---~~~~~~~i~lSaT~~ 217 (354)
...+|++||+|.+... +.+..+++. -....-+++++.|+.
T Consensus 132 ~~~ii~lDE~d~l~~q---~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLSE---KILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCCT---HHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhcc---hHHHHHHhcccccCCcEEEEEEecCcc
Confidence 4568999999999732 344444432 122345666777763
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.25 E-value=0.0018 Score=55.21 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.||+|+|||..+-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 46899999999999965443
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.22 E-value=0.00052 Score=54.79 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
|.-.++.|++|+|||++.+..+......+ .+++++.|...-. . ...+....++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~r---~--~~~i~srlG~~------------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDTR---S--IRNIQSRTGTS------------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCGG---G--CSSCCCCCCCS------------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCch---H--HHHHHHhcCCC------------------
Confidence 55678899999999987777766665444 3488887754210 0 00111111110
Q ss_pred CCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
. ..+-+.+.+.+...+... ......++||+||++.+.. ...+.+..+.+ .+.+++ +++-
T Consensus 66 ~-~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~---~gi~Vi-l~Gl 124 (223)
T 2b8t_A 66 L-PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFDD-RICEVANILAE---NGFVVI-ISGL 124 (223)
T ss_dssp S-CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSCT-HHHHHHHHHHH---TTCEEE-EECC
T ss_pred c-cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCcH-HHHHHHHHHHh---CCCeEE-EEec
Confidence 0 122245555565555432 2234579999999997532 23344444443 245544 4443
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.21 E-value=0.0003 Score=52.53 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~ 90 (354)
.++.+++.+|+|+|||..+-..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 6788999999999999654443
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.15 E-value=0.0012 Score=51.95 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
|+-.++.+++|+|||+.++-.+......+. +++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 445678999999999888877776665543 5899998764
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.06 E-value=0.0061 Score=48.43 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
....+||+||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999997543 2445556666655555444443
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.05 E-value=0.0032 Score=53.91 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=26.1
Q ss_pred ChHHHHHhHhhhh----cCC---cEEEEcCCCCchhhHhHHHHhh
Q 018574 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~---~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
++|+|.+.+..+. +++ ..++.||+|+|||..+...+-.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 3577777766554 333 3899999999999665544433
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.02 E-value=0.0016 Score=48.13 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCCchhh
Q 018574 68 IKGRDVIAQAQSGTGKTS 85 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~ 85 (354)
..+.++++.+|+|+|||.
T Consensus 25 ~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp TCSSCEEEEEETTCCHHH
T ss_pred CCCCcEEEECCCCccHHH
Confidence 346789999999999995
No 120
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.97 E-value=0.0056 Score=51.34 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=68.8
Q ss_pred cchHHHHHHHHhhC--CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcccccc
Q 018574 257 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWAR 334 (354)
Q Consensus 257 ~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 334 (354)
..|+..+.+++... .+.+++||++..+..+-+...+...++.+..++|.... .+.+ -.++...+.+.|...+-
T Consensus 108 SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k----~~~~~~~i~Lltsag~~ 182 (328)
T 3hgt_A 108 SGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAA----ANDFSCTVHLFSSEGIN 182 (328)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCC
T ss_pred CccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhh----cccCCceEEEEECCCCC
Confidence 34888888877644 34699999999999999999999999999999998443 2221 12455666666766666
Q ss_pred CCC-----cCCCcEEEecCCCCCC
Q 018574 335 GLD-----VQQAILFFFLFLFCNV 353 (354)
Q Consensus 335 Gid-----i~~~~~Vi~~~~p~s~ 353 (354)
|+| +..++.||.||--+|+
T Consensus 183 gin~~~~nl~~aD~VI~~DsdwNp 206 (328)
T 3hgt_A 183 FTKYPIKSKARFDMLICLDTTVDT 206 (328)
T ss_dssp TTTSCCCCCSCCSEEEECSTTCCT
T ss_pred CcCcccccCCCCCEEEEECCCCCC
Confidence 775 7899999999998886
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.91 E-value=0.0035 Score=55.84 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
...+++.||+|+|||..+-.. ...+.....+..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ai-a~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSI-GNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHH-HHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHHHHhCCCCeEEEee
Confidence 357999999999999654433 33332222233455544
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.85 E-value=0.0031 Score=58.39 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=72.3
Q ss_pred CChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEE
Q 018574 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (354)
Q Consensus 55 ~~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (354)
.++..|.+++..+.. ....++.|+-|.|||.+.-+. ++.+.. .++|..|+.+-+....+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~-~a~~~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQL-ISRIAG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHH-HHHSSS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHH-HHHHHh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 578899999988876 446799999999999444433 444332 268899998766544443211
Q ss_pred EEEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEE
Q 018574 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~l 212 (354)
.+-+..|+.+.. .....+++|||||=.+ -...+..++.. ...++|
T Consensus 240 --------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~----~~~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSR----FPRTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTT----SSEEEE
T ss_pred --------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhh----CCeEEE
Confidence 022234544321 1224789999999887 45566666653 335788
Q ss_pred EeeC
Q 018574 213 SATL 216 (354)
Q Consensus 213 SaT~ 216 (354)
|.|.
T Consensus 285 ~tTv 288 (671)
T 2zpa_A 285 TTTV 288 (671)
T ss_dssp EEEB
T ss_pred EecC
Confidence 8886
No 123
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.80 E-value=0.0039 Score=49.57 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
|+-.++.|++|+|||+..+..+..+...+ .+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g---~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTT---CCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEeecCC
Confidence 56678899999999988877777665544 45888888753
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.0087 Score=52.16 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.||+|+|||..+-.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 56899999999999965443
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.72 E-value=0.0046 Score=49.92 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.++.+++.||+|+|||..+-.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999965443
No 126
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0046 Score=54.48 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=36.0
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhH
Q 018574 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~ 86 (354)
.+..+|++.+--+..++.+.+. .+..|..++..- +...+.+++.||+|+|||..
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHH
Confidence 4457899998778888877653 122333333322 22357899999999999954
No 127
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0063 Score=50.73 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=32.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhh--hhcCCcEEEEcCCCCchhhHhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+|+++.-.+...+.+...-. .+ ....+.+.. +..++.+++.||+|+|||..+-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 4568888766677776665311 00 011122222 2346789999999999996443
No 128
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0072 Score=52.50 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=32.8
Q ss_pred ccCcccCCCCHHHHHHHHHCC---CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~ 86 (354)
..+|++.+=-+..++.+++.= +..|..++..- +...+.+++.||+|+|||..
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 468999876667777776531 11222222221 22357899999999999953
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.61 E-value=0.021 Score=42.11 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCchhhHhH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 346789999999999996443
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.58 E-value=0.014 Score=45.71 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
+.+++.||+|+|||..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 7899999999999965443
No 131
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.55 E-value=0.019 Score=47.40 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
..+++.||+|+|||..+-.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5799999999999965443
No 132
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.52 E-value=0.0053 Score=48.22 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
|.-.++.+|+|+|||+..+..+......+ .+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEeccC
Confidence 55568999999999977766665544433 45899988754
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.50 E-value=0.0024 Score=53.96 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3479999999999996554
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.44 E-value=0.0046 Score=53.96 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
.+.+++.||+|+|||..+-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45699999999999965443
No 135
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.41 E-value=0.058 Score=41.40 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.||+|+|||..+-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999996544
No 136
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.39 E-value=0.0091 Score=50.78 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=25.2
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEee
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
..+++++||+|.+........+..++...+.+.++++ +++
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~-~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII-TAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE-EES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE-EeC
Confidence 5689999999998623334555555555444555554 444
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.35 E-value=0.01 Score=45.63 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
..++++.||+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 467999999999999655433
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.016 Score=49.17 Aligned_cols=38 Identities=16% Similarity=0.389 Sum_probs=24.0
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~l 212 (354)
....++|+||+|.+... ....+..++...+....+++.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEE
Confidence 45689999999998433 234555556655555554443
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.31 E-value=0.015 Score=51.20 Aligned_cols=131 Identities=15% Similarity=0.276 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc-C-CHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS-P-TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-p-~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (354)
.-+++.+++|+|||+.....+...... +.+++++. + .+.-+ .+++..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~--------- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ--------- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC---------
Confidence 357889999999998766555444332 23455544 3 22222 2333333333344332211111
Q ss_pred cCCCeEEEeCcHHHH-HHHhcCCccCCCccEEEEecchhhh---ccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHH
Q 018574 149 EHGVHVVSGTPGRVC-DMIKRKTLRTRAIKLLVLDESDEML---SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (354)
Q Consensus 149 ~~~~~iiv~T~~~l~-~~~~~~~~~~~~~~~vvvDE~h~~~---~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~ 224 (354)
.|..+. ..+.. .....+++||+|++-+.. +..+...+..+.....++.-++.++|+...+.....
T Consensus 163 ---------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a 231 (433)
T 3kl4_A 163 ---------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA 231 (433)
T ss_dssp ---------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH
T ss_pred ---------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH
Confidence 111111 11221 112467899999997643 333556666666666667777888888766555554
Q ss_pred Hhc
Q 018574 225 TKF 227 (354)
Q Consensus 225 ~~~ 227 (354)
..+
T Consensus 232 ~~f 234 (433)
T 3kl4_A 232 SRF 234 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 140
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.31 E-value=0.0096 Score=50.63 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=32.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHH-hHhh-hhcCCcEEEEcCCCCchhhHhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQR-AVMP-IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~-~~~~-~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+|+++.-.+...+.+...-. ++.... .+.. ....+++++.||+|+|||..+-
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3568888777777777766321 111111 1111 1124679999999999996443
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.30 E-value=0.0066 Score=53.02 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.||+|+|||..+-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 799999999999965543
No 142
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.25 E-value=0.012 Score=56.12 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCCcCCCcEEEe
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLDVQQAILFFF 346 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~~~~Vi~ 346 (354)
+.+++|.++++.-+.+.++.+++ .++++..++|+++..++...++.+.+|+.+|+|+|. .+...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 46899999999998888877764 378999999999999999999999999999999995 5556778888888875
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.016 Score=50.39 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
++.+++.||+|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999965443
No 144
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.019 Score=48.25 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=23.4
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
....++|+||+|.+.... .+.+.+.+..-++...+++.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 357899999999985443 344555555444444444433
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.011 Score=50.98 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=24.4
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
...+|++||+|.+... ....+..++...+....+++.+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 5589999999998543 2345556666655555555544
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.024 Score=48.81 Aligned_cols=42 Identities=5% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
.+..++|+||+|.+ +......+...+...+.+..+++.|-.+
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 35689999999994 4445566777777766665555555443
No 147
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.07 E-value=0.037 Score=42.85 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH-HHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (354)
...+++..++|.|||.+++..++..+..+. +++++--.+. ....=...+..+ ++.......+-........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~- 99 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNRE- 99 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHH-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcH-
Confidence 458999999999999999988888887654 4777743221 000001112122 2333222211110000000
Q ss_pred cCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccC--cHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHH
Q 018574 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (354)
Q Consensus 149 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~ 224 (354)
. +.. ..-..+....+ .+....+++||+||.-.....+ -.+.+..++...+....+|+.+--+++++.+..
T Consensus 100 -~--~~~-~a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 100 -A--DTA-ACMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp -H--HHH-HHHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred -H--HHH-HHHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 0 000 00111211111 2334578999999997654333 345666777776666655554445566555544
No 148
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.06 E-value=0.017 Score=48.51 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=32.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHh-hhhcCCcEEEEcCCCCchhhHhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+|++++-.+...+.+.+.-. .+..+...... .+..++.+++.||+|+|||..+-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~-~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ-YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH-HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 3578888666666666655311 11111111111 12346789999999999996443
No 149
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.022 Score=50.16 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=32.3
Q ss_pred ccCcccCCCCHHHHHHHHHC---CCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHh
Q 018574 32 ITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~ 87 (354)
..+|++.+=-+.+++.+.+. .+..|..++..- +...+.+++.||+|+|||..+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 46888887556666666552 111222222221 233578999999999999543
No 150
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.95 E-value=0.022 Score=48.44 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=32.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHH-hHhh-hhcCCcEEEEcCCCCchhhHhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQR-AVMP-IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~-~~~~-~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+|++.+=.+.+.+.+.+.-. +|.+.. .+.. ....+.+++.||+|+|||..+-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 4678888767777777765311 111111 1111 1224689999999999996443
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.035 Score=47.54 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=25.2
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
...++|+||+|.+... ....+..++...+....+++.+
T Consensus 110 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 4789999999988543 3455666666665555555443
No 152
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.87 E-value=0.083 Score=42.30 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.||+|+|||..+-.
T Consensus 47 ~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999965443
No 153
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.032 Score=49.33 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=33.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHH-HHhHhh--hhcCCcEEEEcCCCCchhhHh
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q-~~~~~~--~~~~~~~ii~~~tGsGKT~~~ 87 (354)
..+|++.+=-+.+++.+++.=. +|.. .+.+.. +...+.+++.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4678888777777777776311 1111 122222 233678999999999999533
No 154
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.78 E-value=0.065 Score=46.30 Aligned_cols=20 Identities=45% Similarity=0.649 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
++.+++.||+|+|||..+-.
T Consensus 70 ~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45799999999999964443
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.75 E-value=0.12 Score=45.71 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=32.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc--CCHHHHHHHHHHHHHhccCcCeEEE
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAH 133 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (354)
.-+++.+++|+|||+...-.+...... +.+++++. |.+.-+ .+++..+....++.+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEE
Confidence 357899999999998776655444332 33455554 333322 3444455544455443
No 156
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.028 Score=49.16 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=33.9
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHh
Q 018574 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~ 87 (354)
.+..+|++.+=-+..++.+.+. .+..|..++..-+ ...+.+++.||+|+|||..+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3457899987555666666552 1223333333222 23578999999999999533
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.67 E-value=0.039 Score=44.59 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=33.4
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
..|.-+++.+|+|+|||..++..+...+..+ .+++++.-.. ...++.+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~---~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMG---EPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccC-CHHHHHHHHHHc
Confidence 4577889999999999977665555444332 3477766432 345555555433
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.023 Score=48.11 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=23.2
Q ss_pred CccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
+..+||+||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46899999999985432 334445555544555555444
No 159
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.63 E-value=0.059 Score=47.46 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=62.2
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhc---CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccc---cCCCcCCCcE
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWA---RGLDVQQAIL 343 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~---~Gidi~~~~~ 343 (354)
.+.+++|.++++..+.++++.+++ .++.+..++|+.+..++....+.+..|+.+|+|+|+ .+. .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 457899999999999999999988 578999999999998888888888889999999995 221 1245567777
Q ss_pred EEe
Q 018574 344 FFF 346 (354)
Q Consensus 344 Vi~ 346 (354)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 160
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.59 E-value=0.026 Score=48.29 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 589999999999996443
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.52 E-value=0.014 Score=51.94 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+++.||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 368999999999996443
No 162
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.48 E-value=0.09 Score=43.08 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 018574 69 KGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~ 87 (354)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999543
No 163
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.42 E-value=0.061 Score=48.43 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=28.0
Q ss_pred ccEEEEecchhhhccC----------cHHHHHHHHhhCCCCCcEEEEEeeCch
Q 018574 176 IKLLVLDESDEMLSRG----------FKDQIYDVYRYLPPDLQVVLISATLPH 218 (354)
Q Consensus 176 ~~~vvvDE~h~~~~~~----------~~~~~~~i~~~~~~~~~~i~lSaT~~~ 218 (354)
.++|++||+|.+.... ....+...+........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886421 223444555555556667888888544
No 164
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.40 E-value=0.037 Score=49.29 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=31.1
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHH-HhHhh-hhcCCcEEEEcCCCCchhhHhH
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMP-IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~-~~~~~-~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+|++++=.+...+.+...-. +|.+. +.+.. ....+.+++.||+|+|||..+-
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 34567777656666666654311 11111 01111 1234789999999999996444
No 165
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.28 E-value=0.056 Score=43.19 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=25.7
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+..|.-+++.+|+|+|||..+...+......+ .+++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEc
Confidence 34577889999999999976555443333222 23666553
No 166
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.17 E-value=0.066 Score=46.10 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999996544
No 167
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.15 E-value=0.086 Score=46.02 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
.+++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999996443
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.03 E-value=0.052 Score=47.68 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCcEEE--EcCCCCchhhHhHH
Q 018574 70 GRDVIA--QAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii--~~~tGsGKT~~~~~ 89 (354)
+..+++ .||+|+|||...-.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 346788 89999999965443
No 169
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.83 E-value=0.032 Score=53.16 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=33.5
Q ss_pred cccCcccCCCCHHHHHHHHHCCC-CCChHHHHHhHhh--hhcCCcEEEEcCCCCchhh
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGF-EKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTS 85 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~Q~~~~~~--~~~~~~~ii~~~tGsGKT~ 85 (354)
+..+|++.+--++..+.+++.-. ...++ +.+.. +...+.+++.+|+|+|||.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p---~~f~~~g~~~~~gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHP---DKFLKFGMTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCS---GGGSSSCCCCCSCCEEESSTTSSHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCH---HHHHhcCCCCCceEEEecCCCCCchH
Confidence 34678998888888888877422 11111 11111 1235689999999999994
No 170
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.79 E-value=0.021 Score=48.25 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
++++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999996444
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.77 E-value=0.086 Score=47.97 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=26.6
Q ss_pred CCccEEEEecchhhhccC--cHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 174 RAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
....+|++||+|.+.... ....+..++.. ...++++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999986532 23455555554 345577777764
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.75 E-value=0.055 Score=46.02 Aligned_cols=52 Identities=25% Similarity=0.207 Sum_probs=32.7
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
-+..|.-+++.|++|+|||..++-.+..... .+.+++|+..- .-..|+..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC-CCHHHHHHHH
Confidence 3455778999999999999766655555444 23457777642 2234444443
No 173
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.75 E-value=0.12 Score=51.75 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=64.2
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEc-cccccCCCcCCCcEEE
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITT-DVWARGLDVQQAILFF 345 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gidi~~~~~Vi 345 (354)
.+.+++|.+++...+.+.++.+++ .++.+..+++..+..++...++.+..|+.+|+|+| ..+...+.+.++++||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999999988888764 36788999999999999999999999999999999 4666678888888776
Q ss_pred e
Q 018574 346 F 346 (354)
Q Consensus 346 ~ 346 (354)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 4
No 174
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.43 E-value=0.29 Score=39.59 Aligned_cols=72 Identities=10% Similarity=0.225 Sum_probs=53.2
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc------ccCCCcC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW------ARGLDVQ 339 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~------~~Gidi~ 339 (354)
...+++|.+++++.+.++++.+++. ++.+..++|+.+.......+ .+..+|+|+|. .+ ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999998887654 78888999988765544333 25789999995 21 2457788
Q ss_pred CCcEEEe
Q 018574 340 QAILFFF 346 (354)
Q Consensus 340 ~~~~Vi~ 346 (354)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8887764
No 175
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.38 E-value=0.087 Score=52.48 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=62.6
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhc---CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cccc---CCCcCCCcE
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRG---YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWAR---GLDVQQAIL 343 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~---Gidi~~~~~ 343 (354)
.+.++||.+++++.+.++++.+++ .++.+..++|+.+..++....+.+..|+.+|+|+|+ .+.. -++..++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 467899999999988888888999999999999995 2211 145567777
Q ss_pred EEe
Q 018574 344 FFF 346 (354)
Q Consensus 344 Vi~ 346 (354)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.23 E-value=0.22 Score=42.89 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 211 (354)
....+||+||+|.+.... ...+...+...+.+..+++
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il 154 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLL 154 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEE
Confidence 346799999999984332 3444455554433433333
No 177
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.20 E-value=0.2 Score=44.61 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=27.7
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+..|.-+++.|++|+|||..++..+....... +.+++|+..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 34467789999999999976666555544322 234777664
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.20 E-value=0.27 Score=39.42 Aligned_cols=27 Identities=22% Similarity=0.120 Sum_probs=20.8
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhh
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
+..|.-+.+.+|+|+|||..+...+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 334678899999999999776665554
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.02 E-value=0.049 Score=46.69 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
|.-+.|.+|+|+|||...+..+......+ .+++|+.....+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEeccccc
Confidence 56789999999999976665554443322 347787765443
No 180
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.00 E-value=0.072 Score=45.93 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=27.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
.|+-++|.+++|+|||..++..+......+ .+++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCC
Confidence 356789999999999977666655544332 3477776543
No 181
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.98 E-value=0.34 Score=38.22 Aligned_cols=71 Identities=13% Similarity=0.367 Sum_probs=53.0
Q ss_pred CcEEEEcCchhhHHHHHHHHhcC-----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcCCC
Q 018574 273 TQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQQA 341 (354)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~~ 341 (354)
.+++|.+++++.+.++++.+++. +..+..++|+.+...... .+.++..+|+|+|. .+ ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998887654 678889999887655443 34457789999995 22 234667788
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87764
No 182
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.94 E-value=0.24 Score=44.17 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=27.9
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+..|.-+++.|++|+|||..++..+....... +.+++|+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEEC
Confidence 44567899999999999976666555544322 234777764
No 183
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.69 E-value=0.031 Score=47.99 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
.|+-+++.+|+|+|||..++..+......+ .+++|+.-..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCC
Confidence 467789999999999987666665544332 3477776543
No 184
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.45 E-value=0.089 Score=39.92 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=72.1
Q ss_pred ChHHHHHhHhhhhc--CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEE
Q 018574 56 PSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (354)
Q Consensus 56 ~~~~Q~~~~~~~~~--~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (354)
..+-|..++..++. .+-.++.++-|++|+...+.-++..... .|.++.+++|+..-.....+... ..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~~~l~~~~~-------l~-- 103 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQMNMKQDER-------LS-- 103 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHHHHHSCTTT-------CS--
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHHHHHHhhcC-------cC--
Confidence 34668888888765 3467889999999998755544443332 35579999999776654433221 10
Q ss_pred EEeCCcchHHhHHhhcCCCeEEEeCcHHHHHHHhcCCccCCCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEEE
Q 018574 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~lS 213 (354)
..++ |- ..+......+..-+.+||||+..+........+..-.. .+.|++++-
T Consensus 104 ------------------~~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~---~naqvvll~ 156 (189)
T 2l8b_A 104 ------------------GELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAAR---HNVQVLITD 156 (189)
T ss_dssp ------------------SCSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred ------------------ccee--eh----hhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHh---cCCEEEEeC
Confidence 0110 11 11222333334556999999999854443333333322 567888876
Q ss_pred ee
Q 018574 214 AT 215 (354)
Q Consensus 214 aT 215 (354)
-+
T Consensus 157 ~~ 158 (189)
T 2l8b_A 157 SG 158 (189)
T ss_dssp SS
T ss_pred Cc
Confidence 66
No 185
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.38 E-value=0.11 Score=49.46 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=25.0
Q ss_pred CccEEEEecchhhhcc------C----cHHHHHHHHhhCCCCCcEEEEEee
Q 018574 175 AIKLLVLDESDEMLSR------G----FKDQIYDVYRYLPPDLQVVLISAT 215 (354)
Q Consensus 175 ~~~~vvvDE~h~~~~~------~----~~~~~~~i~~~~~~~~~~i~lSaT 215 (354)
...+|++||+|.+... . ....+...+..+....+++++.||
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 3578999999998532 1 112233334444455667888887
No 186
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=93.37 E-value=0.29 Score=38.97 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC-----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQ 339 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~ 339 (354)
...+++|.+++++.+.++++.+++. ++++..++|+.+..++...+ .+.+|+|+|. .+ ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999999988764 67788899988765544332 3689999995 22 2345667
Q ss_pred CCcEEEe
Q 018574 340 QAILFFF 346 (354)
Q Consensus 340 ~~~~Vi~ 346 (354)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 7777664
No 187
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.28 E-value=0.1 Score=54.56 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=30.8
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (354)
.++.+++.+|+|+|||..+...+.+.... +.+++++.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEccccc
Confidence 36789999999999998877776665543 3457887765443
No 188
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.16 E-value=0.046 Score=47.00 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (354)
.|+-+++.+++|+|||..++..+......+ .+++|+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCC
Confidence 456789999999999987776665554333 3477777643
No 189
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.61 E-value=0.57 Score=37.59 Aligned_cols=71 Identities=8% Similarity=0.171 Sum_probs=52.5
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----cc-ccCCCcCCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VW-ARGLDVQQA 341 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~~ 341 (354)
+.+++|.+++++.+.++++.+++. ++.+..++|+.+.......++ ...+|+|+|+ .+ ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 457999999999999988877653 788999999988666554443 2588999995 11 124577788
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
++||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 87764
No 190
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.53 E-value=0.57 Score=39.02 Aligned_cols=24 Identities=21% Similarity=0.093 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
++.+.+.+++|+|||+.....+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 455778899999999766554443
No 191
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.36 E-value=0.095 Score=43.89 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=30.3
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHH
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (354)
.+.+.+|+|+|||...+..+....... .+.+++|+..-.++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhH
Confidence 579999999999987777766555331 2346888887655543
No 192
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.20 E-value=0.16 Score=39.97 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=29.0
Q ss_pred CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhHH
Q 018574 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..-+..|..++..+..|..+.+.+|.|+|||+.+-.
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 3344556778888888899999999999999975443
No 193
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.04 E-value=0.37 Score=43.82 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 330 (354)
.+++||.++++..+.+....|++.++.+..++++.+..++....+.+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 37899999999999999999999999999999999988888888889999999999995
No 194
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.94 E-value=0.45 Score=37.76 Aligned_cols=72 Identities=7% Similarity=0.113 Sum_probs=48.2
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC---CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-c-----cccCCCcCCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY---NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-V-----WARGLDVQQA 341 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~-----~~~Gidi~~~ 341 (354)
.+.+++|.+++++.+.++++.+++. +..+..++|+.+...+... +. ...+|+|+|. . ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3467999999999999999988764 6778888887664443332 22 4589999995 1 2235677888
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87764
No 195
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.039 Score=48.69 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=32.7
Q ss_pred cccCcccCCCCHHHHHHHHHCC---CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHh
Q 018574 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~ 87 (354)
+..+|++.+=-+..++.+.+.= +..|..++..- +...+.+++.||+|+|||..+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3467888875666666665531 11222222221 223578999999999999543
No 196
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.71 E-value=0.49 Score=37.89 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=45.2
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWA-RGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidi~~ 340 (354)
...+++|.+++++.+.++++.+++. +..+..++|+.+.. ...+.+..+..+|+|+|. .+. ..+++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3468999999999999999988754 56677777765432 223445567789999994 222 3466777
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 877764
No 197
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.43 E-value=0.65 Score=42.95 Aligned_cols=59 Identities=5% Similarity=0.141 Sum_probs=53.8
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHH--hCCCCcEEEEcc
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEF--RSGTTRVLITTD 330 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~T~ 330 (354)
.+.+||.++++..+.+....|++.++.+..++|+.+..++..+.+.+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 47899999999999999999999999999999999999888888887 568899999996
No 198
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.42 E-value=0.95 Score=39.10 Aligned_cols=72 Identities=13% Similarity=0.376 Sum_probs=53.9
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC-----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQQ 340 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~ 340 (354)
..++||.|+++..+.++++.+++. +..+..++|+.+....... +..+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 358999999999999988888764 6889999999876554443 4457789999995 22 23456777
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 877764
No 199
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.36 E-value=0.58 Score=42.31 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=28.8
Q ss_pred HHHHHHCCCCCChHHHHHhHh-hhhcCCcEEEEcCCCCchhhHhHHHHhhcc
Q 018574 45 LRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (354)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~ 95 (354)
...+.+.|. +.+.+...+. .+..|..+++.||||||||+..- .++..+
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~-aL~~~i 284 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLN-AIMMFI 284 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHH-HHGGGS
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHH-HHHhhC
Confidence 344555553 2333333333 34568889999999999996443 334443
No 200
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.32 E-value=1.1 Score=34.77 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=49.7
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC-----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-c----ccc-CCCcCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-V----WAR-GLDVQQ 340 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~~~-Gidi~~ 340 (354)
..+++|.++++..+.++++.+++. +..+..++|+.+..+... .+ .+..+|+|+|. . +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 357999999999999988887653 567888888876544332 22 35789999995 2 222 346677
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 201
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.24 E-value=0.2 Score=42.16 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
++++++.||+|+|||..+...+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999997655444433
No 202
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=91.23 E-value=0.34 Score=48.86 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=42.8
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccC---------CCceeEEEEcCCHHHHHHHHHHHHHh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---------SREVQALILSPTRELATQTEKVILAI 124 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~---------~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (354)
...+|.|+.|||||.+....++..+... -.-.++|+|+=|++-+.++.+++...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3459999999999998888888877532 12347999999999998888887653
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.99 E-value=0.19 Score=48.14 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999996544
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.54 E-value=0.55 Score=45.62 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
.+++++.||+|+|||..+-.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35799999999999964443
No 205
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.30 E-value=1.3 Score=32.97 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=50.5
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCcc
Q 018574 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (354)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 177 (354)
.++||.++++..+..+++.+... ++.+..++++.+..+... .+. ....|+|+|. . -...++....+
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----V-AARGIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTTTCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----h-hhcCCchhcCC
Confidence 46999999999999999988775 477888888866544332 233 3478999993 1 22455666777
Q ss_pred EEEEec
Q 018574 178 LLVLDE 183 (354)
Q Consensus 178 ~vvvDE 183 (354)
+||.-+
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 777644
No 206
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.26 E-value=0.37 Score=36.71 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=25.5
Q ss_pred EEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 018574 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (354)
++|.+++|||||..+...+.. +.+++|+......-..+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-------~~~~~yiaT~~~~d~e~~~rI~~h~ 47 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-------APQVLYIATSQILDDEMAARIQHHK 47 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-------CSSEEEEECCCC------CHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-------CCCeEEEecCCCCCHHHHHHHHHHH
Confidence 689999999999644433221 2347888876554455555554443
No 207
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.25 E-value=1.7 Score=32.66 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=51.0
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCC
Q 018574 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (354)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~ 175 (354)
.+.++||.|+++..+..+++.+... ++.+..++++.+..+... .+. ....|+|+|. .-...++...
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCccc
Confidence 3457999999999999998888764 477888888876554432 233 3478999994 1234566667
Q ss_pred ccEEEEe
Q 018574 176 IKLLVLD 182 (354)
Q Consensus 176 ~~~vvvD 182 (354)
.++||.-
T Consensus 103 ~~~Vi~~ 109 (175)
T 2rb4_A 103 VTIVVNF 109 (175)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 7887743
No 208
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.17 E-value=1.7 Score=35.38 Aligned_cols=71 Identities=10% Similarity=0.082 Sum_probs=51.0
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----cc--ccCCCcCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VW--ARGLDVQQ 340 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~--~~Gidi~~ 340 (354)
+.+++|.+++++.+.++++.+++. +..+..+.|+.+....... +.. ..+|+|+|+ .+ ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGN-GINIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHH-CCSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcC-CCCEEEEcHHHHHHHHHccCCccccc
Confidence 467999999999999998888763 5677888888765544333 233 389999994 11 22577888
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888764
No 209
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=89.80 E-value=0.19 Score=50.60 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=35.6
Q ss_pred EEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
-+|.|+.|||||.+.+.-+.+.+..+..+.++|++||... .-++.+++.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~ 52 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELA 52 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHT
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHH
Confidence 3789999999999888888777766555567999999653 333444443
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.76 E-value=1.1 Score=43.15 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 018574 69 KGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~ 87 (354)
.++.+++.+|+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999543
No 211
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=89.74 E-value=0.63 Score=36.71 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=45.0
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~ 340 (354)
...+++|.++++..+.++++.+++. +..+..++|+.+..+... .+ .+.+|+|+|. .+ ...+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 3458999999999999988887653 677888888765443332 22 2388999995 21 33566777
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 212
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=89.72 E-value=2 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=38.2
Q ss_pred EEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCC
Q 018574 275 AVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGT 322 (354)
Q Consensus 275 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 322 (354)
.+||....+...++...+++.|.++..++++...+.|.+-++.|....
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 467777778888888888888889888888888888888888886533
No 213
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=89.71 E-value=0.91 Score=36.15 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=48.9
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc----cc--CCCcCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW----AR--GLDVQQ 340 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~--Gidi~~ 340 (354)
+.+++|.+++++.+.++++.+++. +..+..++|+.+.......+ +..+|+|+|. .+ .. .+++.+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 467999999999999999888764 47788888886644433322 4689999995 22 12 366777
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777764
No 214
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=89.70 E-value=0.57 Score=41.97 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccccccCCCcC
Q 018574 260 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQ 339 (354)
Q Consensus 260 ~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~ 339 (354)
...+...++.. +.++++.|.+...++.+.+.|++.++........ . .+ ....|.++...+..|+.+|
T Consensus 371 ~~~L~~~~~~~-~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~--~~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLETF-DGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EA--SDRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHHC-CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GC--CTTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hc--CCCcEEEEEcccccCcccC
Confidence 45666666432 4689999999999999999999988875544321 1 12 2346777778899999999
Q ss_pred CCcEEEe
Q 018574 340 QAILFFF 346 (354)
Q Consensus 340 ~~~~Vi~ 346 (354)
..+.+|.
T Consensus 438 ~~klaVI 444 (483)
T 3hjh_A 438 VRNLALI 444 (483)
T ss_dssp TTTEEEE
T ss_pred CCCEEEE
Confidence 9888775
No 215
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.66 E-value=0.17 Score=40.76 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=31.6
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (354)
.|.-+++.|++|+|||..++..+...+... +..++|+.-. .-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc-CCHHHHHHHHHH
Confidence 356789999999999976666555443322 1236676543 234445555543
No 216
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.61 E-value=0.41 Score=40.41 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccC---------CCc----eeEEEEcCCHHH-HHHHHHHHHHh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---------SRE----VQALILSPTREL-ATQTEKVILAI 124 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---------~~~----~~~lil~p~~~l-~~q~~~~~~~~ 124 (354)
|.-+++.+++|+|||..++..+....... ..+ .+++|+.-...+ ..++.+.+..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 45689999999999977766665432211 112 568887754432 44455445444
No 217
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.52 E-value=1.3 Score=37.42 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=35.0
Q ss_pred CccEEEEecchhhh-ccCcHHHHHHHHhhCCCCCcEEEEEeeCchhHHHHHHhcc
Q 018574 175 AIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFM 228 (354)
Q Consensus 175 ~~~~vvvDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~lSaT~~~~~~~~~~~~~ 228 (354)
..+++++|.+-... .......+..+.+.+.++..++.+.++...+.......+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 34678888876542 2335566666666666777788888887776666555543
No 218
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=89.45 E-value=1.4 Score=35.48 Aligned_cols=70 Identities=7% Similarity=0.111 Sum_probs=49.8
Q ss_pred CcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcCCCc
Q 018574 273 TQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQQAI 342 (354)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~~~ 342 (354)
.++||.+++++.+.++++.+++. +..+..++|+.+.......+ ....+|+|+|. .+ ...+++.+++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999999988887653 56778888887654433322 35689999995 22 2245677777
Q ss_pred EEEe
Q 018574 343 LFFF 346 (354)
Q Consensus 343 ~Vi~ 346 (354)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 219
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.38 E-value=1.7 Score=33.60 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=50.8
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC--CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-c----c-ccCCCcCCCcE
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY--NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-V----W-ARGLDVQQAIL 343 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~-~~Gidi~~~~~ 343 (354)
..+++|.++++..+.++++.+++. +..+..++|+.+.......+. ...+|+|+|. . + ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999999865 467788888876554443332 3678999995 1 1 22456777777
Q ss_pred EEe
Q 018574 344 FFF 346 (354)
Q Consensus 344 Vi~ 346 (354)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 220
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.33 E-value=0.12 Score=42.65 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=28.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHH-HHhHhhhh--cCCcEEEEcCCCCchhhHh
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q-~~~~~~~~--~~~~~ii~~~tGsGKT~~~ 87 (354)
..+|++.+-.+++.+.+.+.=. +++. .+++..+. -.+.+++.||+|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 4678888877777777765311 2222 22333221 2345999999999999543
No 221
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.12 E-value=0.2 Score=38.85 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
++.+++.+|||+|||..++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 567899999999999655443
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.04 E-value=0.25 Score=37.71 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.|+-+++.||+|+|||+..-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467789999999999964443
No 223
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.88 E-value=0.52 Score=41.39 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHhHhhhh--cCCcEEEEcCCCCchhhHhH
Q 018574 59 IQQRAVMPII--KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 59 ~Q~~~~~~~~--~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..++..++ .+..+++.+|||||||+...
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3444454443 34568999999999996444
No 224
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.85 E-value=2.3 Score=31.60 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=50.3
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCc
Q 018574 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (354)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 176 (354)
+.++||.++++.-+..+++.+... ++.+..++++.+..+... .+. ....|+|+|. . -...++....
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccC
Confidence 346999999999999999988765 367888888866544332 232 3478999993 1 2235566677
Q ss_pred cEEEEec
Q 018574 177 KLLVLDE 183 (354)
Q Consensus 177 ~~vvvDE 183 (354)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 7776644
No 225
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.80 E-value=0.63 Score=39.33 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=32.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhcccc---CCCceeEEEEcCCHHH-HHHHHHHHHHh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT---SSREVQALILSPTREL-ATQTEKVILAI 124 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~p~~~l-~~q~~~~~~~~ 124 (354)
|.-+++.+++|+|||..++..+...... +..+.+++|+.-...+ ..++.+.+..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999997766665543322 1113457777654332 34444444443
No 226
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.68 E-value=0.23 Score=40.62 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.3
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..|+.+.+.+|+|+|||+..-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHH
Confidence 45677899999999999965443
No 227
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.65 E-value=3.5 Score=30.87 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=50.9
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCc
Q 018574 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (354)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 176 (354)
+.++||.|+++.-+..+++.+... ++.+..++++.+..+... .+. ....|+|+|.- -...++....
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 346999999999999999988775 477888888876554332 233 34789999941 2235555667
Q ss_pred cEEEEecc
Q 018574 177 KLLVLDES 184 (354)
Q Consensus 177 ~~vvvDE~ 184 (354)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 77776443
No 228
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.54 E-value=1.3 Score=48.80 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=41.7
Q ss_pred CHHHHHHHHHCCCCCChHHHHH----hHhhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCC
Q 018574 41 KDDLLRGIYQYGFEKPSAIQQR----AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (354)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~----~~~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (354)
.+.+.+.+.+.|+ ++.+.|.. ..+.+..+..+++.||||+|||.++-..+.+.-.-.+......++-|.
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 4566677778888 66666643 223344477899999999999987654433221111222344556664
No 229
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.50 E-value=0.93 Score=36.92 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCCCChHHHHHhHhhhhcCC-----cEEEEcCCCCchhhHhHHH
Q 018574 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGR-----DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 43 ~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~-----~~ii~~~tGsGKT~~~~~~ 90 (354)
.+.+.|+-.|+. |... ..++..+++++ .+++.||+|+|||..+...
T Consensus 74 ~i~~~l~~qg~~-~~~~-~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~al 124 (267)
T 1u0j_A 74 RIYKILELNGYD-PQYA-ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAI 124 (267)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHH-HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 667777777773 3222 23344445443 5899999999999765533
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.47 E-value=0.27 Score=38.69 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=25.1
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
+..|.-+++.+|+|+|||..+...+. . .+..++++.-
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~ 53 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDT 53 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEES
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEEC
Confidence 34467889999999999976665544 1 2234666653
No 231
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.43 E-value=0.51 Score=42.51 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=21.3
Q ss_pred hcCCcEEEEcCCCCchhhHhHHHHhhcccc
Q 018574 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~ 97 (354)
..+.+++|.++||||||.+.-..+...+..
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~ 194 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYK 194 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999997655444444433
No 232
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.39 E-value=1.2 Score=37.13 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999996443
No 233
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.39 E-value=0.49 Score=48.22 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=26.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~l 212 (354)
++-+++|+||+=..++......+...++...+++-++.+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 355789999998877776677777777766555544443
No 234
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.27 E-value=0.21 Score=38.87 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
+.+++.+|+|+|||..+.
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358999999999996553
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.26 E-value=0.3 Score=37.90 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.++.+++.|++|+|||+..-.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467899999999999975543
No 236
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.11 E-value=0.48 Score=37.55 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=21.0
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~ 98 (354)
++++.+++|+|||+.++-.+......+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 589999999999988776666655443
No 237
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.09 E-value=2.1 Score=37.73 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=51.4
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----cccc-CCCcCCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWAR-GLDVQQA 341 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidi~~~ 341 (354)
..++||.+++++.+.++++.+++. ++++..++|+.+.......+ ....+|+|+|. .+.. .+++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 357999999999999999888753 56788889988765544332 24689999995 1222 3567778
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
++||.
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 87764
No 238
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.06 E-value=0.68 Score=41.69 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=20.6
Q ss_pred HHhHhhhhcCCcEEEEcCCCCchhhHh
Q 018574 61 QRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 61 ~~~~~~~~~~~~~ii~~~tGsGKT~~~ 87 (354)
..+...+..+.++++.||+|+|||..+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344445566899999999999999533
No 239
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.94 E-value=0.47 Score=39.97 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=33.9
Q ss_pred hhhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHH
Q 018574 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (354)
Q Consensus 65 ~~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (354)
.-+..|.-+++.|++|+|||..++..+...+..+ .+++++.-- .-..|+..++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHH
Confidence 3344577899999999999976666555544333 357777643 33344444443
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.87 E-value=0.33 Score=38.03 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.|+-+++.||+|+|||+..-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46778999999999997444
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.75 E-value=0.24 Score=38.10 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=17.4
Q ss_pred hhcCCcEEEEcCCCCchhhHhH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
+..|+.+++.||+|+|||+..-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 4457789999999999996443
No 242
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.68 E-value=0.92 Score=38.99 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
...++++.||+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999996443
No 243
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.67 E-value=0.34 Score=37.76 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=18.4
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
...++-+++.||+|+|||+..-.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999974443
No 244
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=87.63 E-value=0.59 Score=36.80 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=47.2
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC--------CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY--------NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWA-RGLD 337 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gid 337 (354)
..+++|.+++++.+.++++.+++. +..+..++|+.+..+. .+.+ ....+|+|+|. .+. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999999988877653 5677788887643221 1111 24678999995 122 2456
Q ss_pred cCCCcEEEe
Q 018574 338 VQQAILFFF 346 (354)
Q Consensus 338 i~~~~~Vi~ 346 (354)
+.++++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 667777664
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.62 E-value=0.28 Score=41.52 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~ 91 (354)
++.++|.||||+|||......+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999997555443
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.58 E-value=0.46 Score=49.18 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (354)
|+-+.+.+|.|+|||+.++..+.+....+ ..++++.+-.+|.... +++++-. .
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g---~~~~~i~~e~~~~~~~---~~~~Gv~-------------~-------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPIY---ARKLGVD-------------I-------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEECTTSCCCHHH---HHHTTCC-------------G--------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEecCCCCCHHH---HHHcCCC-------------H--------
Confidence 45689999999999988887776655544 3488888877776665 3343311 1
Q ss_pred CCCeEEEeCcHHHHHHHhc--CCccCCCccEEEEecchhhhc
Q 018574 150 HGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLS 189 (354)
Q Consensus 150 ~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~vvvDE~h~~~~ 189 (354)
.++++.-|+.-...+.- ..+....+++||||.+-.+..
T Consensus 1484 --~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 --DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred --HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 12555555433222211 122234678999999987753
No 247
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.55 E-value=0.9 Score=49.38 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHH----HhHhhhhcCCcEEEEcCCCCchhhHhHHHH
Q 018574 40 IKDDLLRGIYQYGFEKPSAIQQ----RAVMPIIKGRDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 40 ~~~~~~~~l~~~~~~~~~~~Q~----~~~~~~~~~~~~ii~~~tGsGKT~~~~~~~ 91 (354)
+.+.+.+.+.+.++ ++.+.+. +..+.+..+..+++.||||+|||.++-..+
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 34556677777787 5666653 223334457889999999999997665443
No 248
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.52 E-value=0.28 Score=37.17 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|+|||++.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999996443
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.52 E-value=0.16 Score=39.04 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCchhhH
Q 018574 71 RDVIAQAQSGTGKTSM 86 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~ 86 (354)
+.+++.||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999963
No 250
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.50 E-value=2.3 Score=33.27 Aligned_cols=70 Identities=24% Similarity=0.335 Sum_probs=50.1
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCcc
Q 018574 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (354)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 177 (354)
.++||.|+++.-+..+++.+...+ +.+..++|+.+..+... .+. ....|+|+|. . -...++...++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidi~~v~ 101 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRLG----HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----V-AARGLDIPQVD 101 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHT----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----T-TTCSSSCCCBS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcC----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----h-hhcCCCCccCc
Confidence 469999999999999999887764 77888898876554433 233 3478999994 2 22456666777
Q ss_pred EEEE
Q 018574 178 LLVL 181 (354)
Q Consensus 178 ~vvv 181 (354)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 251
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.47 E-value=0.36 Score=36.87 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
++.+++.|++|+|||+..-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 467899999999999755443
No 252
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.39 E-value=0.36 Score=41.57 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=18.5
Q ss_pred hhhcCCcEEEEcCCCCchhhHhH
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..|+.+++.||||+|||+..-
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHHH
Confidence 34568999999999999996433
No 253
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=87.26 E-value=3.1 Score=36.81 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=52.5
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC-CC---eEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccc-----cCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY-NF---TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWA-----RGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~-----~Gidi~~ 340 (354)
...++||.|+++..+.+.++.+++. +. .+..++|+....++..... +.+|+|+|. .+. ..+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 4679999999999999999988765 54 8899999988776554432 578999994 222 1455667
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
.++||.
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 777664
No 254
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.25 E-value=0.47 Score=42.01 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=28.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (354)
...++++.|+||+|||..+...+.+.+.. +..++|+=|.-+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCCchhH
Confidence 35789999999999998653333333322 335777777766654
No 255
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.09 E-value=0.39 Score=37.33 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.|+.+.+.||+|+|||+..-.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999965443
No 256
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.97 E-value=0.65 Score=40.43 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (354)
.+.++++.++||+|||...-..+..... .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcC
Confidence 5678999999999999765554444432 2345777767654
No 257
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.90 E-value=0.42 Score=36.32 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchhhHhHH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
..++.+++.|++|+|||+..-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3467899999999999975443
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=86.90 E-value=0.29 Score=36.81 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
.+++.|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997444
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.82 E-value=0.4 Score=37.27 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchhhHhHH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
..|.-+++.||+|+|||+..-.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4577889999999999965443
No 260
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=86.80 E-value=0.76 Score=38.35 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=47.3
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC-----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEccc-c-----c-cCCCcC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY-----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTDV-W-----A-RGLDVQ 339 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~-----~-~Gidi~ 339 (354)
..++||.+++++.+.+++..++.. +..+..+.++...... .....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988887653 4566677766542211 1356789999962 1 1 357788
Q ss_pred CCcEEEe
Q 018574 340 QAILFFF 346 (354)
Q Consensus 340 ~~~~Vi~ 346 (354)
+++++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 8888775
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.75 E-value=0.34 Score=41.07 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=18.9
Q ss_pred hhhhcCCcEEEEcCCCCchhhHhH
Q 018574 65 MPIIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 65 ~~~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+..++++++.||+|+|||..+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344558899999999999996443
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.67 E-value=0.25 Score=37.40 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCchhhHhH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..|.-+.+.||+|+|||+.+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 356778999999999997544
No 263
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.62 E-value=4 Score=31.26 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=50.4
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCcc
Q 018574 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (354)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 177 (354)
.++||.|+++.-+..+++.+...+ +.+..++++.+..+... .+. ....|+|+|. ... ..++....+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKG----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCC
Confidence 369999999999999999887764 77888888876544332 222 3478999992 222 355666777
Q ss_pred EEEEec
Q 018574 178 LLVLDE 183 (354)
Q Consensus 178 ~vvvDE 183 (354)
+||.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 777633
No 264
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=86.55 E-value=1.3 Score=44.13 Aligned_cols=73 Identities=21% Similarity=0.374 Sum_probs=55.7
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CC----eEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCC-cCCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NF----TVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARGLD-VQQA 341 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gid-i~~~ 341 (354)
+.+++|.+++++.+.++++.+++. ++ .+..++|+.+...+.+..+.+.+ .+|+|+|+ .+..-+. +.++
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 468999999999999999888643 55 78999999998888777777776 99999995 2222222 5577
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
++||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77664
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.52 E-value=0.46 Score=36.85 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchhhHhHH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
..|+-+++.||+|+|||...-.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHH
Confidence 3577899999999999974443
No 266
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.48 E-value=1.4 Score=39.10 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=29.4
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
-+..|.-+++.|+||+|||..++..+...+.. +.+++|++-
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 34456789999999999997766666655544 345787764
No 267
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.41 E-value=4.2 Score=35.34 Aligned_cols=70 Identities=9% Similarity=0.081 Sum_probs=50.2
Q ss_pred CcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcCCCc
Q 018574 273 TQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQQAI 342 (354)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~~~ 342 (354)
.+++|.+++++.+.++++.+++ .++.+..++|+.+..+.... +. ...+|+|+|. .+ ...+++.+++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---LE-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---HT-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---hh-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4699999999999999988865 36788889998775544332 22 4679999995 22 2235677777
Q ss_pred EEEe
Q 018574 343 LFFF 346 (354)
Q Consensus 343 ~Vi~ 346 (354)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 268
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=86.41 E-value=2.7 Score=36.14 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~ 340 (354)
...+++|.++++..+.++++.+++ .+..+..++|+.+..+....+. ..+|+|+|. .+ ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346899999999999988887764 3678889999887665544433 578999994 21 22455666
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777664
No 269
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.40 E-value=7.6 Score=34.07 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
+.+.+.++.|+|||+.....+...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 346778999999997666554443
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.39 E-value=0.36 Score=40.38 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchhhHhHHHH
Q 018574 71 RDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~ 91 (354)
+-++|.||||+|||..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHH
Confidence 357899999999996555443
No 271
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.35 E-value=0.83 Score=36.91 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=31.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhh--cCCcEEEEcCCCCchhhHhH
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+|+++.-.+.....++..-. .. .....+..+. -.+.+++.+|+|+|||..+-
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~--~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVE--FL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHH--HH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH--HH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 34678887666677666655311 01 1112232221 13459999999999996443
No 272
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.29 E-value=0.94 Score=38.62 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccC---CCceeEEEEcCCHHH-HHHHHHHHHHh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTREL-ATQTEKVILAI 124 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l-~~q~~~~~~~~ 124 (354)
|.-+++.+|+|+|||..++..+....... ..+.+++|+.-...+ ..++.+.+..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 34579999999999977666555433211 123457777654431 33444444443
No 273
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.26 E-value=0.46 Score=36.90 Aligned_cols=20 Identities=45% Similarity=0.582 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.|.-+.+.||+|+|||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57778999999999997544
No 274
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.07 E-value=2.3 Score=32.48 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHh---HHhhc-CCCeEE
Q 018574 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLE-HGVHVV 155 (354)
Q Consensus 80 GsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~ii 155 (354)
...|.. .+.-++... ..+.++||.|+++.-+..+++.+... ++.+..++|+.+..+. ...+. ....|+
T Consensus 29 ~~~K~~-~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHH-HHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHH-HHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 456764 333333332 23456999999999999999988775 4677788876543322 22222 347899
Q ss_pred EeCcHHHHHHHhcCCccCCCccEEEE
Q 018574 156 SGTPGRVCDMIKRKTLRTRAIKLLVL 181 (354)
Q Consensus 156 v~T~~~l~~~~~~~~~~~~~~~~vvv 181 (354)
|+|. . . ...++....++||.
T Consensus 101 vaT~-~----~-~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA-V----A-ARGLDISNVKHVIN 120 (185)
T ss_dssp EEEC------------CCCSBSEEEE
T ss_pred EEcC-h----h-hcCCCcccCCEEEE
Confidence 9993 1 1 13445556777765
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.06 E-value=0.51 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.414 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|+|||+..-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999996443
No 276
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.05 E-value=2.3 Score=36.99 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=19.9
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCC
Q 018574 30 EAITSFDAMGIKDDLLRGIYQYGFE 54 (354)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~ 54 (354)
..+..+...|+++..++.|++.||.
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 3455666778999999999999985
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.04 E-value=0.49 Score=36.17 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..+++.|++|+|||++.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999997544
No 278
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.96 E-value=3.6 Score=37.03 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=22.9
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.+++.+++|+|||+.+...+...... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 57888999999997766655443322 234566554
No 279
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.89 E-value=0.45 Score=38.59 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999996443
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.72 E-value=0.39 Score=36.76 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|+|||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999997544
No 281
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.71 E-value=0.44 Score=39.76 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 018574 72 DVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~ 91 (354)
-++|.||||+|||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 47899999999997555443
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.55 E-value=0.45 Score=38.61 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 018574 72 DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~ 90 (354)
-+++.||+|||||+.+...
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 3689999999999755433
No 283
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.53 E-value=0.43 Score=40.48 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCCchhhH
Q 018574 67 IIKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~ 86 (354)
+..|+.+.+.+|+|+|||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34589999999999999963
No 284
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.52 E-value=0.65 Score=37.32 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=20.1
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHH
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~~~~ 91 (354)
.+..|.-+.+.+|+|+|||+.+...+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34567889999999999997655444
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=85.48 E-value=0.38 Score=36.41 Aligned_cols=17 Identities=18% Similarity=0.351 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
-+++.|++|||||+.+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999997544
No 286
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.42 E-value=0.17 Score=51.56 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=24.2
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCC
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~ 207 (354)
++-+++++||+=..++......+...+..+.+++
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~ 604 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGR 604 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 4678999999998888766666666665544443
No 287
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.39 E-value=1.2 Score=36.60 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=21.8
Q ss_pred hhhhcCCcEEEEcCCCCchhhHhHHHHh
Q 018574 65 MPIIKGRDVIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 65 ~~~~~~~~~ii~~~tGsGKT~~~~~~~~ 92 (354)
..+..|.-+++.+|+|+|||+.+...+.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456688899999999999976665554
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.24 E-value=0.58 Score=35.82 Aligned_cols=18 Identities=33% Similarity=0.726 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
+-+.+.||+|+|||+..-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457899999999996443
No 289
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.14 E-value=0.49 Score=39.30 Aligned_cols=54 Identities=9% Similarity=0.109 Sum_probs=30.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHH-HHhHhhhh-cCCcEEEEcCCCCchhhHhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPII-KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q-~~~~~~~~-~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+|+++.=.+...+.+.+.-. .+.. .+.+..+. .++.+++.||+|+|||..+-
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 3567777656666666655311 1111 11111122 35789999999999996443
No 290
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.06 E-value=1 Score=41.10 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhccccCCC-ceeEEEEcCC
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPT 110 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~lil~p~ 110 (354)
..+++|.+.||||||.+.-..+...+....+ ..+++++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4689999999999997666555555544333 3344444343
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.05 E-value=0.62 Score=36.79 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCCchhhHhH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
+..|+-+.+.||+|+|||+..-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3458889999999999996443
No 292
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.81 E-value=0.46 Score=40.76 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..+++.||||||||+..-
T Consensus 122 ~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45578999999999996443
No 293
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.74 E-value=0.44 Score=41.17 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=17.9
Q ss_pred hhcCCcEEEEcCCCCchhhHhHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..|..+++.||||+|||+..-.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 34577899999999999965443
No 294
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.69 E-value=0.58 Score=36.36 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=17.4
Q ss_pred cEEEEcCCCCchhhHhHHHHhhc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
-.++.|++|+|||..+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46899999999998766554443
No 295
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.67 E-value=0.48 Score=39.42 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
+.+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568899999999996443
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.57 E-value=0.62 Score=36.12 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..+++.||+|+|||+.+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999996544
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.43 E-value=0.41 Score=36.12 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|+|||+..-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5578999999999996544
No 298
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=84.38 E-value=2.3 Score=38.72 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=47.6
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc----ccC-C-CcCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW----ARG-L-DVQQ 340 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~G-i-di~~ 340 (354)
..++||.++++..+.++++.+++. ++.+..++|+.+...+...+. ...+|+|+|. .+ ..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 578999999999998888888764 889999999976554332221 2478999995 22 222 3 5667
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777765
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.35 E-value=0.58 Score=35.06 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
.+++.|++|+|||+..-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997544
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.27 E-value=0.39 Score=38.29 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=13.8
Q ss_pred hhcCCcEEEEcCCCCchhhHhH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
+..|+-+.+.||+|+|||+..-
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp EECCCEEEEECSCC----CHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 4457788999999999997544
No 301
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.04 E-value=0.62 Score=37.75 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=29.1
Q ss_pred ccCcccCCCCHHHHHHHHHCC--CCCChHHHHHhHhhhhcCCcEEEEcCCCCchhhHhH
Q 018574 32 ITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+|+++.-.+...+.+.+.- +..+..++... ....+.+++.||+|+|||..+-
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 457787766666666554420 10111111100 1124579999999999996443
No 302
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.03 E-value=0.68 Score=36.13 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=17.1
Q ss_pred hhhcCCcEEEEcCCCCchhhHhH
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..|+-+.+.+|+|+|||+..-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 46678889999999999996443
No 303
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.84 E-value=1 Score=37.51 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhhc
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
++.+.+.+++|+|||+.....+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5578899999999997666554443
No 304
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.76 E-value=0.95 Score=37.58 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=26.8
Q ss_pred hhhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcC
Q 018574 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (354)
Q Consensus 66 ~~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (354)
.+..|.-+++.||+|+|||......+....... +.+++++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence 344578899999999999976655444333321 224666653
No 305
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.63 E-value=0.56 Score=37.04 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~ 90 (354)
+.+-+++.||+||||++.+-..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3456788999999999755443
No 306
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=83.50 E-value=1.6 Score=39.64 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=49.6
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc----ccC-C-CcCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW----ARG-L-DVQQ 340 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~G-i-di~~ 340 (354)
..++||+++++..+.+.+..+++. ++.+..++|+.+...+...+. +..+|+|+|. .+ ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 578999999999888888877664 889999999986554432221 2578999995 22 222 2 5566
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 676664
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=83.39 E-value=0.5 Score=36.02 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
|..+++.|++|||||+..-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999975443
No 308
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.27 E-value=2.5 Score=38.99 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 211 (354)
.+.+++++||.-.-++......+...+..+..+.-++.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 534 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45689999999988887777777777766654433333
No 309
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.95 E-value=7 Score=33.03 Aligned_cols=71 Identities=11% Similarity=0.233 Sum_probs=49.6
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----ccCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----ARGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gidi~~ 340 (354)
...+++|.++++..+.++++.+++. +..+..++|+.........+ . ..+|+|+|. .+ ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~--~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C--CCCEEEecHHHHHHHHHcCCccccc
Confidence 4568999999999999988888753 66788888887655443333 2 578999995 22 12355667
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777664
No 310
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.93 E-value=0.68 Score=38.97 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 018574 72 DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~ 90 (354)
.+++.||||+|||......
T Consensus 7 ~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999755543
No 311
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=82.82 E-value=4.5 Score=34.94 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=50.4
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----cc-ccCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VW-ARGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~ 340 (354)
...+++|.++++..+.++++.+++. ++.+..++|+......... ..+..+|+|+|. .+ ....++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 3458999999999998888888653 6778888888764433221 236789999994 12 23456777
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777764
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=82.77 E-value=0.77 Score=34.33 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
+++++.+++|||||++.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999975543
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.63 E-value=0.51 Score=36.16 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.|++|+|||+..-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999975443
No 314
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.63 E-value=0.77 Score=38.69 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
-+++.|+.|+|||+..-
T Consensus 6 v~~i~G~~GaGKTTll~ 22 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLR 22 (318)
T ss_dssp EEEEEESSSSSCHHHHH
T ss_pred EEEEEecCCCCHHHHHH
Confidence 36899999999997543
No 315
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=82.56 E-value=0.84 Score=36.07 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcCCCCchhhHhH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
.-.|+-+++.||.|+|||+..-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 3457889999999999996443
No 316
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.52 E-value=12 Score=34.14 Aligned_cols=91 Identities=7% Similarity=0.095 Sum_probs=60.0
Q ss_pred hHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHH
Q 018574 87 IALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRV 162 (354)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l 162 (354)
.+..+...+.....+.++||.|+++.-+..+++.+..... .++.+..++++....+... .+. ...+|+|+|.
T Consensus 325 ~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~--- 400 (563)
T 3i5x_A 325 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD--- 400 (563)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG---
T ss_pred HHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc---
Confidence 3333444444434556799999999999999999887632 2467778888866544332 222 4588999994
Q ss_pred HHHHhcCCccCCCccEEEEecc
Q 018574 163 CDMIKRKTLRTRAIKLLVLDES 184 (354)
Q Consensus 163 ~~~~~~~~~~~~~~~~vvvDE~ 184 (354)
.-...++..++++||.-..
T Consensus 401 ---~~~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 401 ---VGARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp ---GGTSSCCCTTCCEEEEESC
T ss_pred ---hhhcCCCcccCCEEEEECC
Confidence 2234667777888876553
No 317
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=82.49 E-value=0.77 Score=35.90 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=14.9
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 018574 72 DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~ 90 (354)
.+++.||+||||++.+-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3688999999999755543
No 318
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=82.46 E-value=5.6 Score=34.43 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=50.8
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----cc-ccCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VW-ARGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~ 340 (354)
...+++|.++++..+.++++.+++. +..+..+.|+.+... ..+.+..+..+|+|+|. .+ ...++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999999998888754 566777777755333 34455668899999994 22 22355666
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 776654
No 319
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=82.35 E-value=0.33 Score=44.85 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=26.2
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCCcEEE
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 211 (354)
.+.+++++||.-.-++......+...+..+..+.-++.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 533 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 45689999999988887766667666666544443333
No 320
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.33 E-value=0.74 Score=41.05 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
++++++.||+|+|||..+-.
T Consensus 63 ~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHH
Confidence 46899999999999965543
No 321
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.08 E-value=0.77 Score=38.93 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchhhHhHHH
Q 018574 72 DVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~ 90 (354)
-++|.||||||||..+...
T Consensus 9 lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHH
Confidence 5789999999999765443
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.93 E-value=0.58 Score=35.90 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|||||+.+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458999999999997554
No 323
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.91 E-value=1 Score=36.40 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.++.+++.|++|+|||+..-.
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 389999999999999975443
No 324
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.87 E-value=0.95 Score=38.74 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=19.2
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhHH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~~ 89 (354)
+++.+++|.+ ++.-|.||||||....-
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCC
Confidence 3444556765 58889999999976643
No 325
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.57 E-value=0.96 Score=37.81 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 018574 69 KGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~ 87 (354)
...++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3578999999999999543
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.57 E-value=0.64 Score=38.54 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
.-+++.||+|+|||+.+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999997544
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.51 E-value=0.93 Score=34.76 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.+..+++.|++|||||+..-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456799999999999975443
No 328
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.48 E-value=0.75 Score=37.81 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=32.4
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHhHhhhh--cCCcEEEEcCCCCchhhHhH
Q 018574 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~ii~~~tGsGKT~~~~ 88 (354)
...+|+++.-.+...+.++..-. ... ....+..+. -.+.+++.+|+|+|||..+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 45678888777777776665311 000 112222221 13459999999999996443
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.34 E-value=0.99 Score=34.00 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.+++|+|||+..-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 689999999999975443
No 330
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=81.25 E-value=0.54 Score=36.68 Aligned_cols=26 Identities=19% Similarity=0.047 Sum_probs=18.8
Q ss_pred hHhhhhcCCcEEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
.++.+..+.-+.+.|++|+|||+.+-
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHH
Confidence 34444556678899999999996443
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=81.23 E-value=1 Score=34.87 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.+..+++.|++|+|||+..-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999975543
No 332
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=81.22 E-value=0.66 Score=35.52 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
.-+++.+|+|+|||+..-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3468899999999974443
No 333
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=81.16 E-value=1.3 Score=35.38 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=47.7
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc----cc---CCCcC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW----AR---GLDVQ 339 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~---Gidi~ 339 (354)
+.+++|.+++++.+.++++.+++. +..+..++++.. ..........+..+|+|+|. .+ .. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAV---AAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHH---HHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCcc---HHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999999988764 566666665421 11111222346789999994 11 12 57888
Q ss_pred CCcEEEe
Q 018574 340 QAILFFF 346 (354)
Q Consensus 340 ~~~~Vi~ 346 (354)
++++||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888775
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.15 E-value=1.1 Score=34.07 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+++.+++|||||+..-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999997544
No 335
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=81.13 E-value=0.84 Score=35.34 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCchhhHhH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..|.-+.+.||+|+|||+..-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 346778999999999996544
No 336
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=81.12 E-value=0.96 Score=34.39 Aligned_cols=16 Identities=31% Similarity=0.744 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhhHh
Q 018574 72 DVIAQAQSGTGKTSMI 87 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~ 87 (354)
.+.+.+|+|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999644
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=81.12 E-value=0.9 Score=36.01 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|||||+..-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678999999999997543
No 338
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=81.10 E-value=1 Score=35.48 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.|++|||||+..-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999975543
No 339
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.95 E-value=0.95 Score=38.41 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+++.||+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999996444
No 340
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.93 E-value=0.97 Score=39.03 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999996444
No 341
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=80.89 E-value=0.83 Score=35.65 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 018574 69 KGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~ 87 (354)
.|.-+.|.||+|+|||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567889999999999644
No 342
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.86 E-value=0.94 Score=35.09 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+++.|++|+|||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999997544
No 343
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.86 E-value=0.75 Score=36.82 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCCchhh
Q 018574 68 IKGRDVIAQAQSGTGKTS 85 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~ 85 (354)
..|+-+.+.+|.|+|||+
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357889999999999996
No 344
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=80.85 E-value=0.69 Score=36.58 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=19.2
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~ 91 (354)
+..|+-+.+.+|+|+|||+.+...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456788999999999997655443
No 345
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.84 E-value=1.4 Score=36.87 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCchhhHhHHHHhh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
+-+.+.+++|+|||+.....+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 35789999999999766654443
No 346
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=80.80 E-value=0.28 Score=45.22 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCccEEEEecchhhhccCcHHHHHHHHhhCCCCC
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i~~~~~~~~ 207 (354)
.+.+++++||.-.-++......+...+..+.++.
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~ 527 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDR 527 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTS
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC
Confidence 3467899999988877766666666666554444
No 347
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.77 E-value=0.7 Score=35.32 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.|++|+|||+..-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999965443
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.72 E-value=0.92 Score=35.57 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.|++|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.65 E-value=1.2 Score=35.86 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
+..+++.||+|||||+..-..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456899999999999755433
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=80.63 E-value=0.96 Score=35.44 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.|++|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 351
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=80.61 E-value=17 Score=33.36 Aligned_cols=87 Identities=7% Similarity=0.113 Sum_probs=58.4
Q ss_pred HhhccccCCCceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHH
Q 018574 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMI 166 (354)
Q Consensus 91 ~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~ 166 (354)
+...+.....+.++||.|+++.-+..+++.+..... .++.+..++++....+... .+. ....|+|+|. .
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~ 350 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------V 350 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------G
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------h
Confidence 333333334456799999999999999999987632 2467778888866544332 222 4588999994 2
Q ss_pred hcCCccCCCccEEEEecc
Q 018574 167 KRKTLRTRAIKLLVLDES 184 (354)
Q Consensus 167 ~~~~~~~~~~~~vvvDE~ 184 (354)
-...++...+++||.-..
T Consensus 351 ~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp GTSSCCCTTCCEEEEESC
T ss_pred hhcCCCcccCCEEEEcCC
Confidence 234667777888886654
No 352
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.56 E-value=1.2 Score=37.51 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=19.4
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhHH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~~ 89 (354)
+++.+++|.+ ++..|.||||||....-
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 3444556765 58889999999976643
No 353
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.48 E-value=0.51 Score=38.52 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4578999999999996544
No 354
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=80.41 E-value=5.8 Score=34.36 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCCCcCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-----VWA-RGLDVQQ 340 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gidi~~ 340 (354)
...++||.++++..+.++++.+++. ++.+..++|+.+..+....+. ...+|+|+|. .+. ..++..+
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 3468999999999999999888653 567888888877655443332 3568999994 222 2456667
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 777664
No 355
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=80.31 E-value=1.1 Score=35.39 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
...+++.|++|+|||+..-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999975543
No 356
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.22 E-value=1.2 Score=34.21 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCCccEEEEecchhh--hccCcHHHHHHHHhhCCCCCcEEEEEeeC
Q 018574 173 TRAIKLLVLDESDEM--LSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (354)
Q Consensus 173 ~~~~~~vvvDE~h~~--~~~~~~~~~~~i~~~~~~~~~~i~lSaT~ 216 (354)
....+++|+||+..+ .+..+.+.+..+++. ...+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 456789999997655 344566677776663 23345445564
No 357
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.21 E-value=1 Score=38.69 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
.+.+++.||+|+|||..+-.
T Consensus 117 ~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999965443
No 358
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.19 E-value=0.88 Score=39.53 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchhhHhHHHH
Q 018574 72 DVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~ 91 (354)
-++|.||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 46899999999997655443
No 359
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=79.89 E-value=1.1 Score=37.49 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCchhhHhH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~ 88 (354)
-.|+.+.|.+|+|+|||+..-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 357889999999999996444
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.70 E-value=0.72 Score=34.96 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=12.0
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.|++|||||+.+-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999975543
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=79.67 E-value=1.2 Score=33.28 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
+.+++.+++|||||+..-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999997544
No 362
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.51 E-value=1.2 Score=34.33 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|+|||+..-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999997544
No 363
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=79.48 E-value=0.94 Score=35.66 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 364
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.44 E-value=0.83 Score=34.59 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.|..+++.+++|+|||+..-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35668899999999996444
No 365
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.30 E-value=1.1 Score=34.99 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=17.2
Q ss_pred hhcCCcEEEEcCCCCchhhHhH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
...+..+++.|++|+|||+..-
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3456778999999999996444
No 366
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=79.21 E-value=1.7 Score=29.72 Aligned_cols=36 Identities=8% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 306 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 306 (354)
.+.++++||.+-..+...+..|++.|+.+..+.|++
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 346899999999899999999999999888898884
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.20 E-value=1 Score=34.98 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.|++|||||+..-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45689999999999975543
No 368
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.20 E-value=1.2 Score=40.29 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=33.0
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
+..|.-++|.|++|+|||...+..+...+... +.+++|+.--- -..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSS-CHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccC-CHHHHHHHH
Confidence 44567789999999999977766666555431 33477776432 234444444
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.19 E-value=1.1 Score=34.37 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..+++.|++|+|||+..-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999997543
No 370
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=79.17 E-value=0.92 Score=36.36 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 371
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=79.11 E-value=1.4 Score=37.60 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=18.4
Q ss_pred HhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 64 ~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+..+++|.+ ++..|.||+|||....
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCcceEEEECCCCCCcceEee
Confidence 344566765 5788999999997664
No 372
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=79.03 E-value=1.8 Score=29.00 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=31.4
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 306 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 306 (354)
.+.++++||.+-..+...+..|+..|+.+..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 346899999999999999999999999888888873
No 373
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.98 E-value=1.7 Score=36.56 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCchhhHhHHHHhh
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
+-+.+.+++|+|||+.....+..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45788899999999766554443
No 374
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=78.94 E-value=1.5 Score=37.28 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=20.2
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||||||..+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5666677765 5778999999998764
No 375
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=78.91 E-value=1.5 Score=37.43 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=17.7
Q ss_pred hhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 65 MPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 65 ~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+.+++|.+ ++..|.||||||....
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCceeEEeecCCCCCCCEEee
Confidence 34456665 5788999999997653
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.89 E-value=2.2 Score=35.65 Aligned_cols=21 Identities=43% Similarity=0.571 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
+.-+.+.+|+|+|||+..-..
T Consensus 102 g~vi~lvG~nGsGKTTll~~L 122 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKL 122 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 556889999999999755543
No 377
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.89 E-value=1.4 Score=37.58 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=18.1
Q ss_pred HhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 64 ~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++.+++|.+ ++..|.||||||....
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCceeeec
Confidence 344456665 5888999999997664
No 378
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=78.78 E-value=1.3 Score=37.56 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.1
Q ss_pred hhhhcCCc--EEEEcCCCCchhhHh
Q 018574 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (354)
Q Consensus 65 ~~~~~~~~--~ii~~~tGsGKT~~~ 87 (354)
+.+++|.+ ++..|.||||||..+
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34455665 578899999999765
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.73 E-value=1.2 Score=34.58 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~ 90 (354)
.+..+++.|++|+|||+..-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4667899999999999755433
No 380
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=78.71 E-value=1.6 Score=37.20 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=20.4
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||||||..+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5666777876 4778999999998764
No 381
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.70 E-value=1.5 Score=37.03 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=19.9
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||||||..+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 5556677765 5789999999997664
No 382
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.70 E-value=1.4 Score=38.09 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.3
Q ss_pred hhcCCcEEEEcCCCCchhhHhH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
+-.|+.+.+.+|+|+|||....
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHH
Confidence 3458999999999999996554
No 383
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.60 E-value=1.1 Score=37.42 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+++.||+|+|||.++-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 368999999999996544
No 384
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=78.58 E-value=1.4 Score=37.51 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=18.7
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+++.+++|.+ ++..|+||||||..+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 3444556765 5778999999997664
No 385
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=78.57 E-value=1.7 Score=29.31 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 306 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 306 (354)
.+.++++||.+-..+...+..|+..|+.+..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 346899999998899999999999999888888873
No 386
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.56 E-value=1.4 Score=37.84 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=18.2
Q ss_pred HhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 64 ~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+..+++|.+ ++..|.||||||..+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 344556765 5788999999997654
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.45 E-value=1.2 Score=34.04 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+++.|++|||||+..-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999997544
No 388
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.44 E-value=1.4 Score=35.11 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
+..+++.|++|+|||+..-..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457999999999999755433
No 389
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=78.44 E-value=1.4 Score=37.61 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=18.7
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+++.+++|.+ ++..+.||+|||..+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEec
Confidence 3445556765 4778999999997654
No 390
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=78.35 E-value=1.5 Score=37.58 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=18.9
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||||||..+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 3445566765 5788999999997654
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=78.33 E-value=1.2 Score=33.97 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.|++|+|||+..-.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 55789999999999975544
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=78.23 E-value=3.2 Score=34.90 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhhHh
Q 018574 72 DVIAQAQSGTGKTSMI 87 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~ 87 (354)
-+.+.||+|+|||+.+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 393
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=78.16 E-value=1.6 Score=37.39 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=18.3
Q ss_pred HhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 64 ~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++.+++|.+ ++..|.||||||....
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCceEEEeecCCCCCCceEEe
Confidence 344556765 5789999999997654
No 394
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.07 E-value=1.5 Score=37.50 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=19.2
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+++.+++|.+ ++..|.||||||..+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 4455567765 4788999999997664
No 395
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=78.04 E-value=1 Score=34.81 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchhhHh
Q 018574 71 RDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~ 87 (354)
..+++.|++|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 396
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.02 E-value=1.1 Score=32.89 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchhhHh
Q 018574 72 DVIAQAQSGTGKTSMI 87 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~ 87 (354)
-.+|.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999643
No 397
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.01 E-value=1.6 Score=38.06 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=20.3
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||||||..+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5666677765 4778999999998764
No 398
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=77.96 E-value=1.1 Score=33.44 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
.+++.+++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999996544
No 399
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=77.90 E-value=1.3 Score=34.15 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
.+++.|++|+|||+..-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999996544
No 400
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=77.89 E-value=1.5 Score=38.13 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=19.3
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhHH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~~ 89 (354)
++..+++|.+ ++..|.||||||..+.-
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 3444566765 57789999999987653
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=77.79 E-value=1 Score=36.60 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
..+++.|++|+|||+.+-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4589999999999975443
No 402
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.79 E-value=1 Score=37.07 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3478889999999999963
No 403
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=77.78 E-value=1.7 Score=36.98 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=18.1
Q ss_pred HhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 64 VMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 64 ~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++.+++|.+ ++..+.||||||....
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred HHHHHhhcCeeEEEecccCCCceEeec
Confidence 344556765 5788999999997653
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=77.78 E-value=1.4 Score=34.69 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
+..+++.|++|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999975443
No 405
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.76 E-value=1.1 Score=34.43 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.0
Q ss_pred EEEEcCCCCchhhHhHH
Q 018574 73 VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~~~ 89 (354)
+++.|+.|+|||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999975544
No 406
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.76 E-value=2 Score=35.87 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
|.-+.+.+|+|+|||+..-..
T Consensus 100 g~vi~lvG~nGsGKTTll~~L 120 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKL 120 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 456789999999999755543
No 407
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=77.75 E-value=1 Score=35.81 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 408
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=77.72 E-value=1.4 Score=37.66 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=19.6
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhHH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~~ 89 (354)
+++.+++|.+ ++..|.||||||..+.-
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHTB
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEec
Confidence 4445566765 57889999999976643
No 409
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.66 E-value=1.1 Score=37.64 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
...+++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3689999999999996443
No 410
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.63 E-value=1.4 Score=34.30 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchhhHhHHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~ 90 (354)
.+..+++.|++|||||+..-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999755433
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=77.59 E-value=1.2 Score=34.82 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 412
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=77.54 E-value=1.1 Score=34.25 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999975443
No 413
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.52 E-value=1.2 Score=34.74 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+.-+.+.||+|||||+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 34567899999999996443
No 414
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=77.44 E-value=1 Score=35.77 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp ETTCEEEEEECTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999963
No 415
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=77.40 E-value=4.4 Score=38.93 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc----ccC-C-CcCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW----ARG-L-DVQQ 340 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~~G-i-di~~ 340 (354)
.+++||.++++..+.+.+..+++. ++++..++|+.+...+...+. +..+|+|+|. .+ ..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 578999999999999888877664 889999999986554333221 3688999994 22 222 3 5566
Q ss_pred CcEEEe
Q 018574 341 AILFFF 346 (354)
Q Consensus 341 ~~~Vi~ 346 (354)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677664
No 416
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=77.15 E-value=1.5 Score=35.21 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.||+|+|||+..-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4679999999999996443
No 417
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.14 E-value=2.1 Score=32.16 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
-+.+.++.|+|||+...
T Consensus 6 ~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999996443
No 418
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=77.10 E-value=1.3 Score=32.85 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhhHh
Q 018574 68 IKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~ 87 (354)
..|.-+.+.+|.|+|||+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45677899999999999533
No 419
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=77.08 E-value=1.5 Score=34.57 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchhhHhHH
Q 018574 71 RDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~ 89 (354)
..+.+.||+|||||+..-.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999975443
No 420
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.04 E-value=1.5 Score=37.47 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCchhhHhHHHHhh
Q 018574 70 GRDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
|+-+.+.+|+|+|||......+..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999766655443
No 421
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=76.96 E-value=1.1 Score=36.34 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3578889999999999963
No 422
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=76.94 E-value=1.5 Score=34.07 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+.+.|++|||||+..-.
T Consensus 4 ~i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999975443
No 423
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=76.87 E-value=2.1 Score=29.03 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 306 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 306 (354)
+.+++++|.+-..+...+..|++.|+....+.|++
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 46899999998889999999999999888887763
No 424
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=76.84 E-value=1.6 Score=37.66 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=22.6
Q ss_pred ChHHHHHhHh--------hhhcCCc--EEEEcCCCCchhhHhH
Q 018574 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 56 ~~~~Q~~~~~--------~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+..-|.++++ .+++|.+ ++..|.||||||..+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 4455666554 3445665 5778999999997664
No 425
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=76.84 E-value=1.1 Score=35.86 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999963
No 426
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.83 E-value=0.81 Score=38.95 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999996443
No 427
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.82 E-value=6.3 Score=32.73 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=51.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCc
Q 018574 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (354)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~ 176 (354)
+.++||.|+++.-+..+++.+... ++.+..++++....+... .+. ...+|+|+|. . -...++...+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-AARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-TTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-hhcCccccce
Confidence 346999999999999888887654 478888998866554433 222 3478999994 2 2245666777
Q ss_pred cEEEEecc
Q 018574 177 KLLVLDES 184 (354)
Q Consensus 177 ~~vvvDE~ 184 (354)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 87775343
No 428
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=76.71 E-value=1.6 Score=37.58 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=18.1
Q ss_pred hhhhcCCc--EEEEcCCCCchhhHhHH
Q 018574 65 MPIIKGRD--VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 65 ~~~~~~~~--~ii~~~tGsGKT~~~~~ 89 (354)
+.+++|.+ ++..|.||||||..+.-
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHhCCceEEEEeecCCCCCcceeccc
Confidence 34455665 57889999999976653
No 429
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=76.62 E-value=1.1 Score=36.51 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3478889999999999963
No 430
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.61 E-value=1.3 Score=33.40 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHh
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVC 92 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~ 92 (354)
.|+.+++.++.|+|||..++..+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999976665443
No 431
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=76.59 E-value=7.5 Score=29.75 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=19.5
Q ss_pred EEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 74 ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
+.....|+|||+..+..+...... +.+++++=
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~---g~~vlliD 37 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRS---GYNIAVVD 37 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEE
Confidence 334667899998776665554433 33456554
No 432
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=76.57 E-value=1.1 Score=34.66 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
.+.+.|++|+|||+..-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999996443
No 433
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.45 E-value=1.4 Score=37.06 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCCchhhHhHHHHhh
Q 018574 69 KGRDVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
.+..+++.+|+|+|||..+...+..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4556799999999999766655443
No 434
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=76.43 E-value=7.3 Score=34.36 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999996443
No 435
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=76.43 E-value=1.2 Score=36.29 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.||.|+|||+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3477889999999999963
No 436
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=76.26 E-value=1.8 Score=37.33 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=19.0
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhHH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~~ 89 (354)
+++.+++|.+ ++..|.||||||..+.-
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 3444566765 57889999999987654
No 437
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.20 E-value=2 Score=38.37 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhhHhHH
Q 018574 70 GRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~ 89 (354)
..++++.||+|+|||..+-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 46899999999999965443
No 438
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=76.14 E-value=7.4 Score=37.27 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=52.7
Q ss_pred hhCCCCcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc-----c----
Q 018574 268 DTLTITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW-----A---- 333 (354)
Q Consensus 268 ~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~---- 333 (354)
....+..++|.+++++.|.+.++.+.. .|+++.++.|+++...|.... ..+|+++|+ -+ .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 444556899999999999988877754 489999999999877655432 378999995 22 1
Q ss_pred ---cCCCcCCCcEEEe
Q 018574 334 ---RGLDVQQAILFFF 346 (354)
Q Consensus 334 ---~Gidi~~~~~Vi~ 346 (354)
..++...++.+|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 2355667776653
No 439
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=76.07 E-value=7 Score=37.39 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=43.7
Q ss_pred hCCCCcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc
Q 018574 269 TLTITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330 (354)
Q Consensus 269 ~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 330 (354)
...+.+++|.++|++.|.+.++.+.. .|+++..+.|+++...|.... ..+|+++|+
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 34456899999999999888877654 489999999999876554332 478999996
No 440
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.05 E-value=1.9 Score=38.03 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=17.8
Q ss_pred hhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 65 MPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 65 ~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
+.+++|.+ ++..|.||+|||..+.
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEee
Confidence 34456765 5788999999997664
No 441
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=75.94 E-value=1.2 Score=35.89 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+.+.+.+|.|+|||+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578889999999999963
No 442
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.93 E-value=1.3 Score=36.00 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhhH
Q 018574 69 KGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~ 86 (354)
.|+-+.+.+|.|+|||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 577889999999999963
No 443
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.83 E-value=1.9 Score=37.71 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||||||..+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 5566677765 5788999999997664
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=75.79 E-value=1.6 Score=34.46 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+++.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=75.78 E-value=1.5 Score=35.70 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCCchhhHh
Q 018574 68 IKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~ 87 (354)
..|+.+.+.+|.|+|||+..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999643
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=75.77 E-value=1.5 Score=35.42 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCchhhHh
Q 018574 68 IKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~ 87 (354)
..|+-+.+.+|.|+|||+..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999633
No 447
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.74 E-value=1.6 Score=37.56 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=19.5
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||||||..+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4556667765 5778999999997654
No 448
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=75.67 E-value=1.3 Score=36.11 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchhhH
Q 018574 69 KGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~ 86 (354)
.|+-+.+.+|.|+|||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 477889999999999963
No 449
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=75.63 E-value=5.3 Score=33.39 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHCCCCC-----Ch-HHHHHhHhhhhc----------------CCcEEEEcCCCCchhhHhHHHH
Q 018574 39 GIKDDLLRGIYQYGFEK-----PS-AIQQRAVMPIIK----------------GRDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 39 ~~~~~~~~~l~~~~~~~-----~~-~~Q~~~~~~~~~----------------~~~~ii~~~tGsGKT~~~~~~~ 91 (354)
..++++++..++.++.- .+ ..-..+...+.. |+.+++.++.|+|||..++..+
T Consensus 91 ~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp CCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 35888999999888751 11 111122222222 6789999999999986655443
No 450
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.61 E-value=2 Score=36.99 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.0
Q ss_pred hHhhhhcCCc--EEEEcCCCCchhhHhH
Q 018574 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (354)
Q Consensus 63 ~~~~~~~~~~--~ii~~~tGsGKT~~~~ 88 (354)
++..+++|.+ ++..|.||+|||..+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 3445566765 5778999999997664
No 451
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=75.60 E-value=1.1 Score=36.09 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+.+.+.+|.|+|||+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999963
No 452
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=75.43 E-value=3.3 Score=31.21 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
.-+.+.++.|+|||....
T Consensus 7 ~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 357899999999996443
No 453
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=75.28 E-value=0.85 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+..+++.|++|||||+.+-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999996544
No 454
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.27 E-value=2.4 Score=39.32 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.3
Q ss_pred hhhhcCCcEEEEcCCCCchhhHhH
Q 018574 65 MPIIKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 65 ~~~~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..+..+..+++.+|+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345568899999999999996544
No 455
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=75.23 E-value=1.4 Score=36.18 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+.+.+.+|.|+|||+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 456
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=75.23 E-value=1.4 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577889999999999963
No 457
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=75.20 E-value=1.3 Score=35.87 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp ETTCEEEEECCSSSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577889999999999963
No 458
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.96 E-value=1.8 Score=40.01 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchhh
Q 018574 72 DVIAQAQSGTGKTS 85 (354)
Q Consensus 72 ~~ii~~~tGsGKT~ 85 (354)
++++.||||+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999995
No 459
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=74.91 E-value=24 Score=29.15 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=49.4
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-cc----c-cCCCcCCC
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VW----A-RGLDVQQA 341 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~----~-~Gidi~~~ 341 (354)
..+++|.++++..+.++++.+++. +..+..++|+.+....... +. +.+|+|+|. .+ . ..+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 578999999999999999888743 5788889998876554332 22 488999995 21 1 23456666
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 66654
No 460
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=74.74 E-value=11 Score=36.49 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=45.6
Q ss_pred HhhCCCCcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc
Q 018574 267 YDTLTITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330 (354)
Q Consensus 267 l~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 330 (354)
+....+.+++|.++|...|.+.++.+.. .|+.+..+.|+++...|.... ..+|+++|+
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 4445566899999999988887776654 589999999999977666543 479999995
No 461
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=74.70 E-value=2.2 Score=28.16 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=30.3
Q ss_pred CcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCCC
Q 018574 273 TQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDMP 307 (354)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 307 (354)
.++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999988999999999999988777878753
No 462
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=74.54 E-value=2 Score=34.73 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..+.|.+|+|||||+..-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46678999999999996443
No 463
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=74.53 E-value=1.8 Score=35.37 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCchhhHh
Q 018574 68 IKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~ 87 (354)
..|+-+.+.+|.|+|||+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999643
No 464
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=74.47 E-value=1.4 Score=39.44 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=29.5
Q ss_pred cccCcccCCCCHHHHHHHHHCC--CCCChHHHHHhHhhh--hcCCcEEEEcCCCCchhhHh
Q 018574 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~Q~~~~~~~--~~~~~~ii~~~tGsGKT~~~ 87 (354)
...+|++..=.+...+.+++.- +..+. .+..+ .-.+.+++.+|+|+|||..+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3467888765555555554421 11111 11111 12357999999999999644
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.36 E-value=1.8 Score=34.94 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCchhhHhH
Q 018574 68 IKGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~~~ 88 (354)
..|+-+.+.+|.|+|||+..-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 357888999999999996443
No 466
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=73.80 E-value=40 Score=28.53 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=16.9
Q ss_pred cEEEEcCCCCchhhHhHHHHhh
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQ 93 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~ 93 (354)
.+.+.+++|+|||+.+...+..
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999766554433
No 467
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=73.78 E-value=2.2 Score=36.73 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
-.+|.||+|+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999997553
No 468
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.75 E-value=2.8 Score=35.90 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
+.-+.+.+|+|+|||+..-..
T Consensus 157 g~vi~lvG~nGsGKTTll~~L 177 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKL 177 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHH
Confidence 445789999999999755543
No 469
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=73.51 E-value=2.2 Score=37.67 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=23.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
..+++.+++|+|||+.+...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 368899999999997766655544332 23466655
No 470
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=73.48 E-value=2.2 Score=36.49 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=16.1
Q ss_pred CCc--EEEEcCCCCchhhHhHH
Q 018574 70 GRD--VIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 70 ~~~--~ii~~~tGsGKT~~~~~ 89 (354)
|.+ ++..|.||||||..+.-
T Consensus 83 G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHHHB
T ss_pred CceeEEEeeCCCCCCCCEEEec
Confidence 665 58999999999976653
No 471
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=73.15 E-value=10 Score=36.60 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=45.1
Q ss_pred HhhCCCCcEEEEcCchhhHHHHHHHHhc----CCCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc
Q 018574 267 YDTLTITQAVIFCNTKRKVDWLTEKMRG----YNFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD 330 (354)
Q Consensus 267 l~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 330 (354)
+....+..++|.+++.+.|.+.++.+.. .|+.+.++.|+++...|.... ..+|+++|+
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3444557899999999999887777654 589999999999877665443 378999996
No 472
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=73.08 E-value=2.7 Score=34.88 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCchhhHhHHHHhhc
Q 018574 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~~~~~~~ 94 (354)
+-+.+.+++|+|||+.....+...
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788999999997666554443
No 473
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=72.96 E-value=6.7 Score=25.10 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=28.8
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcCCCe-EEEeecCC
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDM 306 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 306 (354)
..+.+++++|.+-..+...+..|++.|+. +..+ |++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 34578999999988999999999999885 4455 664
No 474
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=72.89 E-value=2.1 Score=32.35 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
-.+|.+|+|+|||..+-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 56899999999996443
No 475
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=72.79 E-value=1.9 Score=35.52 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchhhH
Q 018574 68 IKGRDVIAQAQSGTGKTSM 86 (354)
Q Consensus 68 ~~~~~~ii~~~tGsGKT~~ 86 (354)
..|+-+.+.+|.|+|||+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3578889999999999963
No 476
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=72.47 E-value=9.3 Score=33.71 Aligned_cols=68 Identities=4% Similarity=0.007 Sum_probs=43.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHHhhcC-CCeEEEeCcHHHHHHHhcCCccCCCccEE
Q 018574 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (354)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~v 179 (354)
+.+++|+||++.-+..+++.++.. ++.+..++++. .......+.. ..+|+|+|. .+. ..++.. .++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 346999999999999999998876 46777888743 3333334433 478999994 222 355555 6776
Q ss_pred E
Q 018574 180 V 180 (354)
Q Consensus 180 v 180 (354)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=72.32 E-value=2.3 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.++.+++.||+|+|||+..-
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999996443
No 478
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=72.15 E-value=1.4 Score=36.89 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchhhHh
Q 018574 69 KGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~ 87 (354)
.|+.+.+.+|+|+|||+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4788999999999999643
No 479
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=72.15 E-value=2.1 Score=32.92 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
.+.|.+++|||||+..-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997544
No 480
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=72.07 E-value=1.8 Score=33.91 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhhHhH
Q 018574 71 RDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~~ 88 (354)
..+.+.|++|||||+..-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999997544
No 481
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=72.05 E-value=2.6 Score=36.45 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=21.3
Q ss_pred HHHhHhhh---hcCCcEEEEcCCCCchhhHh
Q 018574 60 QQRAVMPI---IKGRDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 60 Q~~~~~~~---~~~~~~ii~~~tGsGKT~~~ 87 (354)
-.++++.+ -+|+...|.++.|+|||...
T Consensus 162 GiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 162 STRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp HHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred cchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 34555554 45899999999999999654
No 482
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=71.81 E-value=3.1 Score=28.27 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCCcEEEEcCchhhHHHHHHHHhcCCCe-EEEeecCC
Q 018574 271 TITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDM 306 (354)
Q Consensus 271 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 306 (354)
.+.++++||.+-..+...+..|+..|+. +..+.|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 3468999999988999999999999985 77888873
No 483
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=71.55 E-value=1.8 Score=35.92 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=18.6
Q ss_pred CCccEEEEecchhhhccCcHHHHHHH
Q 018574 174 RAIKLLVLDESDEMLSRGFKDQIYDV 199 (354)
Q Consensus 174 ~~~~~vvvDE~h~~~~~~~~~~~~~i 199 (354)
.+.+++++||--.-++......+...
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 176 KDADLYLLDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CCCCEEEEECCcccCCHHHHHHHHHH
Confidence 35678999998887777666666554
No 484
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.17 E-value=2.5 Score=32.46 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchhhHhHH
Q 018574 72 DVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~ 89 (354)
.+.+.|++|||||++.-.
T Consensus 14 iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975543
No 485
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=71.15 E-value=2.2 Score=33.83 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchhhHhHH
Q 018574 69 KGRDVIAQAQSGTGKTSMIAL 89 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~~ 89 (354)
.|.-+++.|++|+|||+..-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 466789999999999975443
No 486
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=71.15 E-value=2.4 Score=38.73 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.+..+++.+|+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999996443
No 487
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=71.13 E-value=9.4 Score=35.87 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=48.7
Q ss_pred CcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-c----cccC-C-CcCCC
Q 018574 273 TQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-V----WARG-L-DVQQA 341 (354)
Q Consensus 273 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~~~G-i-di~~~ 341 (354)
+++||.++++..+.+..+.+++. ++.+..++|+.+...+...+. ...+|+|+|. . +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999999888888887654 788999999876433222221 2589999995 2 2223 2 56677
Q ss_pred cEEEe
Q 018574 342 ILFFF 346 (354)
Q Consensus 342 ~~Vi~ 346 (354)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77764
No 488
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=70.96 E-value=2.2 Score=34.25 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchhhHhH
Q 018574 69 KGRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 69 ~~~~~ii~~~tGsGKT~~~~ 88 (354)
.|.-+.+.||.|||||+.+-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567899999999997554
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=70.91 E-value=3.6 Score=37.36 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=31.1
Q ss_pred hhcCCcEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEcCCHHHHHHHHHHH
Q 018574 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (354)
Q Consensus 67 ~~~~~~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (354)
+..|.-+.+.+++|+|||......+...... +.+++++++... ..|+...+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeCC-HHHHHHHH
Confidence 4457788999999999997655544333222 334677776432 23444443
No 490
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=70.86 E-value=1.9 Score=35.74 Aligned_cols=17 Identities=18% Similarity=0.351 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhhHhH
Q 018574 72 DVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~ 88 (354)
-+++.|++|||||+.+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997544
No 491
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=70.84 E-value=3.8 Score=36.09 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=23.0
Q ss_pred cEEEEcCCCCchhhHhHHHHhhccccCCCceeEEEEc
Q 018574 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (354)
Q Consensus 72 ~~ii~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (354)
.+++.+++|+|||+...-.+....... +.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 567789999999987776665544331 23455554
No 492
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.77 E-value=19 Score=31.01 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=51.1
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccCcCeEEEEEeCCcchHHhHH---hhc-CCCeEEEeCcHHHHHHHhcCCccCCCcc
Q 018574 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (354)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 177 (354)
.++||.|+++.-+..+++.+...+ ..+..++++....+... .+. ....|+|+|. .-...++...++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKEG----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTT----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCC----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCC
Confidence 469999999999999999987764 67778888866554432 233 3478999994 223466777888
Q ss_pred EEEEe
Q 018574 178 LLVLD 182 (354)
Q Consensus 178 ~vvvD 182 (354)
+||.-
T Consensus 337 ~Vi~~ 341 (412)
T 3fht_A 337 VVINF 341 (412)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 88743
No 493
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.70 E-value=9.6 Score=34.21 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=47.5
Q ss_pred CCcEEEEcCchhhHHHHHHHHhcC----CCeEEEeecCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccC--CCcCCCcEE
Q 018574 272 ITQAVIFCNTKRKVDWLTEKMRGY----NFTVSSMHGDMPQKERDAIMGEFRSGTTRVLITTD-VWARG--LDVQQAILF 344 (354)
Q Consensus 272 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~G--idi~~~~~V 344 (354)
.++++|.++++..+.+.++.+++. +..+..++++.+..++ ..+..+|+|+|. .+... ..+.+.++|
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~li 229 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEE
Confidence 359999999999999999999875 2367888888665443 357899999994 33332 334455555
Q ss_pred E
Q 018574 345 F 345 (354)
Q Consensus 345 i 345 (354)
|
T Consensus 230 I 230 (510)
T 2oca_A 230 M 230 (510)
T ss_dssp E
T ss_pred E
Confidence 4
No 494
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=70.38 E-value=4.2 Score=40.11 Aligned_cols=61 Identities=15% Similarity=0.309 Sum_probs=38.8
Q ss_pred cccCcccCC--CCHHHHHHHHHCCCCC--ChHH--HHHhHhhhhc---CCcEEEEcCCCCchhhHhHHHH
Q 018574 31 AITSFDAMG--IKDDLLRGIYQYGFEK--PSAI--QQRAVMPIIK---GRDVIAQAQSGTGKTSMIALTV 91 (354)
Q Consensus 31 ~~~~~~~~~--~~~~~~~~l~~~~~~~--~~~~--Q~~~~~~~~~---~~~~ii~~~tGsGKT~~~~~~~ 91 (354)
++++|..+| .+++..+.++...... |..+ =..+...++. .+.+++.|..|+|||...-..+
T Consensus 96 aVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im 165 (1052)
T 4anj_A 96 AVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165 (1052)
T ss_dssp EECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred EECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHH
Confidence 356777775 3788888776544332 3322 2344444432 5689999999999997665444
No 495
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=70.24 E-value=23 Score=27.98 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=39.5
Q ss_pred EeccccchHHHHHHHHhhCCCCcEEEEcCchhhHHHHHHHHhcCCCe-EEEeecCC
Q 018574 252 AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRGYNFT-VSSMHGDM 306 (354)
Q Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 306 (354)
..+....|.......+... ..+++|++++...+.++.+.+++.+.. +..++|+.
T Consensus 114 ~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~ 168 (237)
T 2fz4_A 114 VLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRI 168 (237)
T ss_dssp EESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSC
T ss_pred EeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3344444655555555444 578999999999999999999888777 88888764
No 496
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=69.96 E-value=2.3 Score=32.86 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhhHhH
Q 018574 70 GRDVIAQAQSGTGKTSMIA 88 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~ 88 (354)
+.-+.+.|++|+|||+.+-
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999996543
No 497
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=69.87 E-value=5.4 Score=27.20 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCCcEEEEcCchhhHHHHHHHHhcCCCeEEEeecCC
Q 018574 270 LTITQAVIFCNTKRKVDWLTEKMRGYNFTVSSMHGDM 306 (354)
Q Consensus 270 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 306 (354)
..+.++++||.+-..+...+..|+..|+....+.|++
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~ 90 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNV 90 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCH
Confidence 3457899999999999999999999988667788885
No 498
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=69.59 E-value=2 Score=37.08 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=0.0
Q ss_pred EEEEcCCCCchhhHh
Q 018574 73 VIAQAQSGTGKTSMI 87 (354)
Q Consensus 73 ~ii~~~tGsGKT~~~ 87 (354)
.++.|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 499
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=69.57 E-value=2.3 Score=33.08 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCchhhHh
Q 018574 71 RDVIAQAQSGTGKTSMI 87 (354)
Q Consensus 71 ~~~ii~~~tGsGKT~~~ 87 (354)
.-.+|.+|+|+|||..+
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 35688999999999643
No 500
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=69.40 E-value=3.7 Score=36.78 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchhhHhHHH
Q 018574 70 GRDVIAQAQSGTGKTSMIALT 90 (354)
Q Consensus 70 ~~~~ii~~~tGsGKT~~~~~~ 90 (354)
|.-+.+.|++|+|||+..-..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~L 313 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKL 313 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHH
Confidence 345789999999999755443
Done!