Your job contains 1 sequence.
>018575
MLPLSSFHPTFTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPLSPPLPAI
SKDIELTRAMSASSKSSLYKLSRSDVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSA
ESKSGRLSEGTKLNLLELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIAL
CIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGEGS
FKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGD
VKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLWGTEALQSSSK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018575
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2824464 - symbol:AT1G56345 species:3702 "Arabi... 865 1.6e-86 1
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 129 5.6e-14 2
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 144 2.5e-13 2
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 145 5.1e-13 2
UNIPROTKB|P0AA41 - symbol:truC species:83333 "Escherichia... 109 1.3e-11 3
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 100 1.4e-11 3
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 100 1.4e-11 3
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 121 8.6e-11 2
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 109 9.3e-11 2
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 108 1.6e-10 2
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 117 3.4e-10 2
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 107 9.8e-10 3
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 118 1.0e-09 2
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 118 1.0e-09 2
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 122 2.8e-09 2
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 103 6.8e-09 2
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 115 1.4e-08 2
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 115 1.4e-08 2
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 100 1.4e-08 2
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 124 1.8e-08 2
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 111 4.6e-08 2
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 111 4.6e-08 2
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 101 8.9e-08 3
TIGR_CMR|GSU_3160 - symbol:GSU_3160 "RNA pseudouridine sy... 95 1.5e-07 2
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 91 3.3e-07 3
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 93 3.3e-07 2
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 122 3.7e-07 2
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 109 3.9e-07 2
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 95 4.6e-07 2
TIGR_CMR|CPS_0536 - symbol:CPS_0536 "RNA pseudouridine sy... 112 8.1e-07 2
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 97 8.3e-07 2
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 94 3.1e-06 2
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 94 3.1e-06 2
UNIPROTKB|G4MYD1 - symbol:MGG_08117 "DRAP deaminase" spec... 95 3.2e-06 2
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 99 3.4e-06 2
TIGR_CMR|CPS_3649 - symbol:CPS_3649 "tRNA pseudouridine s... 92 3.6e-06 2
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 89 5.0e-06 2
UNIPROTKB|O07166 - symbol:Rv3300c "Pseudouridine synthase... 111 5.2e-06 2
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 86 5.4e-06 2
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 101 9.4e-06 2
UNIPROTKB|Q9KRH4 - symbol:VC1668 "Pseudouridine synthase"... 89 1.0e-05 2
TIGR_CMR|VC_1668 - symbol:VC_1668 "pseudouridine synthase... 89 1.0e-05 2
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 96 1.1e-05 2
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 94 1.1e-05 2
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 97 1.2e-05 3
POMBASE|SPAC18B11.02c - symbol:SPAC18B11.02c "tRNA pseudo... 91 2.3e-05 3
TIGR_CMR|CJE_0808 - symbol:CJE_0808 "RNA pseudouridine sy... 74 3.7e-05 3
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 99 8.3e-05 2
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 93 0.00013 2
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 94 0.00019 2
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 77 0.00030 3
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 84 0.00042 2
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 84 0.00042 2
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 85 0.00048 2
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 85 0.00048 2
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 84 0.00051 2
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 105 0.00064 2
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 86 0.00094 2
>TAIR|locus:2824464 [details] [associations]
symbol:AT1G56345 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0006457 "protein folding" evidence=RCA] [GO:0009408 "response
to heat" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0042542 "response to hydrogen
peroxide" evidence=RCA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 EMBL:AC058785 EMBL:AC069159
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 EMBL:BT010200 EMBL:AK228224 IPI:IPI00531084
PIR:D96605 RefSeq:NP_176031.2 UniGene:At.45959
ProteinModelPortal:Q7XA65 SMR:Q7XA65 IntAct:Q7XA65 STRING:Q7XA65
EnsemblPlants:AT1G56345.1 GeneID:842088 KEGG:ath:AT1G56345
TAIR:At1g56345 HOGENOM:HOG000275917 InParanoid:Q7XA65 OMA:GAWRVYA
PhylomeDB:Q7XA65 ProtClustDB:CLSN2680513 Genevestigator:Q7XA65
Uniprot:Q7XA65
Length = 322
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 174/300 (58%), Positives = 212/300 (70%)
Query: 48 NYPTPLSPPLPAISKDIELTXXXXXXXXXXXXXXXXXDVLYEDEWLVAVNKPQGVYCESV 107
NYP P+S P P ISKDIEL D+LYEDE+L+AVNKP+GVYCE+V
Sbjct: 39 NYPKPISAPPPPISKDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAV 98
Query: 108 LASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXDRDTSGVMVITKSHKVASKLVKA 167
L S P ++ S+E L+ DRDTSGVM+ITKSHKVA+KLVKA
Sbjct: 99 LRSAPQIVLDSSSEY---HLAN-------------RLDRDTSGVMIITKSHKVAAKLVKA 142
Query: 168 FTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGAWRVYAASDVGRVLPGGSVVRDMV 227
FT+HK+ K+YIALCIG +P W+R+T+ SGHGRSK GAWRVYAA DVGRVLPGGS VRDM
Sbjct: 143 FTEHKIRKSYIALCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDME 202
Query: 228 TSFEVLSVNGEGSFKEPSELQEHEENNIVV---EKKAVLDADAKKNEILVRAFPRSGRTH 284
T+FEV+SVN + E EL++ N+++V E++ D ++VRAFPRSGRTH
Sbjct: 203 TTFEVVSVNSVKN--ESCELED--VNHVIVAEGERELSCGGDDDDVVVVVRAFPRSGRTH 258
Query: 285 QIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLPLW 344
QIRLHCQYLGI IRGDVKY GVYEWNG+ ++GHELHAE LS DHPVTG ++++APLP W
Sbjct: 259 QIRLHCQYLGIPIRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYW 318
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 129 (50.5 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 34/99 (34%), Positives = 47/99 (47%)
Query: 244 PSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY 303
P ++ HE V VL + VR PR+GR+HQ+R+HCQ LG I GD Y
Sbjct: 121 PRQMVCHETGKPAVTDWRVLRYEGDTTR--VRLLPRTGRSHQLRVHCQALGHPILGDPFY 178
Query: 304 EGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
+ + LH+E L HP +G + +AP P
Sbjct: 179 A---TGAAQAFPRLMLHSEELRLKHPESGRSMTFRAPAP 214
Score = 107 (42.7 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 34/95 (35%), Positives = 43/95 (45%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
DVL+ED L+ +NKP G L SVP G A LS +
Sbjct: 13 DVLHEDAELIVLNKPAG------LLSVP----GRGAHLADCLLSR-VQAAFPGALLVHRL 61
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIA 179
DRDTSGVMV ++ L + F + K KTY+A
Sbjct: 62 DRDTSGVMVFAQTPHAQRNLGRQFEERKTRKTYVA 96
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 144 (55.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 32/65 (49%), Positives = 39/65 (60%)
Query: 278 PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMV 337
P SGR HQIR H +G +RGD +Y G G Y GH LHA ++ HPVTG ++V
Sbjct: 208 PISGRMHQIRKHLSAIGHPVRGDRRYRGTL-LTG--YPGHLLHAFRVALIHPVTGRKLIV 264
Query: 338 QAPLP 342
APLP
Sbjct: 265 HAPLP 269
Score = 92 (37.4 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 29/102 (28%), Positives = 44/102 (43%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
D+L+ED++ V VNKP G+ + L + +GR GT
Sbjct: 79 DILWEDDYCVIVNKPAGLPVHRTAEAGEANLVELAEHFMAGR---GT---AVKLRPVNRL 132
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP 186
DR TSG ++ KS A L + + + K Y+A+ G P
Sbjct: 133 DRGTSGATILAKSSSSAGMLGRYVKEEGLDKLYLAVTDGSLP 174
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 145 (56.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 36/73 (49%), Positives = 47/73 (64%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGK-RYDGHE---LHAESLSFDH 328
LVRAFP +GRTHQIR+HCQ G SI D KY G E++ + + G + LHA S+ F H
Sbjct: 275 LVRAFPVTGRTHQIRVHCQTSGHSIAMDAKY-GHEEFDEQMKSKGLKRLFLHAASIEFTH 333
Query: 329 PVTGCPVMVQAPL 341
P T + ++APL
Sbjct: 334 PNTEQRLKIEAPL 346
Score = 92 (37.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 32/108 (29%), Positives = 45/108 (41%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
+L+ED+ L+ +NKP G+ L+ A R+ E D
Sbjct: 138 ILFEDDRLIVINKPSGMAVHGGSGLSFGLIEALRALRPEARMLE----------LVHRLD 187
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP-KWKRIT 192
RDTSG +++ K L + F D V K Y AL G P K R+T
Sbjct: 188 RDTSGCLMVAKKRSTLRHLHEQFRDKNVQKFYHALVKGHWPTKLTRVT 235
>UNIPROTKB|P0AA41 [details] [associations]
symbol:truC species:83333 "Escherichia coli K-12"
[GO:0006399 "tRNA metabolic process" evidence=IMP] [GO:0009451 "RNA
modification" evidence=IMP] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IMP] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] [GO:0008033 "tRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U29581
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0564 PIR:C65061 RefSeq:NP_417271.1 RefSeq:YP_490999.1
ProteinModelPortal:P0AA41 SMR:P0AA41
EnsemblBacteria:EBESCT00000002568 EnsemblBacteria:EBESCT00000016436
GeneID:12933253 GeneID:947242 KEGG:ecj:Y75_p2728 KEGG:eco:b2791
PATRIC:32120998 EchoBASE:EB2963 EcoGene:EG13171
HOGENOM:HOG000275920 KO:K06175 OMA:FHPIMGD ProtClustDB:PRK11112
BioCyc:EcoCyc:G7449-MONOMER BioCyc:ECOL316407:JW2762-MONOMER
BioCyc:MetaCyc:G7449-MONOMER Genevestigator:P0AA41 Uniprot:P0AA41
Length = 260
Score = 109 (43.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYE-WNGKRYDGHE---LHAESLSFDH 328
LV P++GR HQ+R H +L I GD K+ + + +G + G + LHA LS H
Sbjct: 151 LVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTH 210
Query: 329 PVTGCPVMVQAPL 341
P TG P+ + A L
Sbjct: 211 PFTGEPLTIHAGL 223
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 85 DVLYEDEWLVAVNKPQG 101
++LY+DEWLVAVNKP G
Sbjct: 3 EILYQDEWLVAVNKPSG 19
Score = 67 (28.6 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
DR TSGV+++ S + L + F H++ K Y A+ G
Sbjct: 54 DRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRG 92
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 100 (40.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKY-EGVYEWNGKRYDGHE---LHAESLSFDH 328
L+ P++GR HQ+R H +L I GD + +GV+ + + + LHA L F H
Sbjct: 151 LMEMQPKTGRKHQLRRHMAHLRHPIVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMH 210
Query: 329 PVTGCPVMVQAPLP-LW 344
P T P++++A L +W
Sbjct: 211 PYTQQPLVIRAGLDEVW 227
Score = 88 (36.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
DR TSGV+V S ++AS+++ F +H++ KTY A+ G
Sbjct: 54 DRPTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRG 92
Score = 68 (29.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 11/18 (61%), Positives = 17/18 (94%)
Query: 85 DVLYEDEWLVAVNKPQGV 102
+++Y+DE+LVAVNKP G+
Sbjct: 3 EIVYQDEYLVAVNKPAGM 20
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 100 (40.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKY-EGVYEWNGKRYDGHE---LHAESLSFDH 328
L+ P++GR HQ+R H +L I GD + +GV+ + + + LHA L F H
Sbjct: 151 LMEMQPKTGRKHQLRRHMAHLRHPIVGDTTHGDGVHNRLFREHFSAQRLMLHASELRFMH 210
Query: 329 PVTGCPVMVQAPLP-LW 344
P T P++++A L +W
Sbjct: 211 PYTQQPLVIRAGLDEVW 227
Score = 88 (36.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
DR TSGV+V S ++AS+++ F +H++ KTY A+ G
Sbjct: 54 DRPTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRG 92
Score = 68 (29.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 11/18 (61%), Positives = 17/18 (94%)
Query: 85 DVLYEDEWLVAVNKPQGV 102
+++Y+DE+LVAVNKP G+
Sbjct: 3 EIVYQDEYLVAVNKPAGM 20
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 121 (47.7 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 36/84 (42%), Positives = 45/84 (53%)
Query: 259 KKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGH- 317
K A ++ +N L+ A +GRTHQIR H L I GD G+Y +NGK YD
Sbjct: 210 KSAFINVVKTENLTLMAAKLFTGRTHQIRAHLASLNRHILGD----GLYGYNGK-YDCRI 264
Query: 318 ELHAESLSFDHPVTGCPVMVQAPL 341
LHA L F HP T + V+APL
Sbjct: 265 MLHAYFLYFIHPKTKEQIFVKAPL 288
Score = 96 (38.9 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 30/96 (31%), Positives = 43/96 (44%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
DVLYEDE L+ +NKP + +SV D K LS
Sbjct: 78 DVLYEDEDLLVLNKPSNLVVHGA-SSVKNATLVDWLIEKKYTLSN--LGGEIRAGLVHRL 134
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIAL 180
D+DTSG ++I K++ KL + D + + Y+AL
Sbjct: 135 DKDTSGSILIAKNNFTHQKLSEQLADKSMGRIYLAL 170
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 109 (43.4 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 41/140 (29%), Positives = 62/140 (44%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
D+L+ED +AVNK G+ C+ P L G + + L
Sbjct: 80 DILFEDGGYLAVNKASGLNCQRT----PYQLKGTVEYAVT--LHFRACGSAEPARVIHRL 133
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG-P-APKWKRITIISGHGRSKF 202
DR TSGVM+ S + A+ + + + +V K Y AL G P A W+ ++ G S++
Sbjct: 134 DRGTSGVMIFPASRRAAAHISRELKEGRVEKVYWALVAGMPLADSWQVDAPVAKVGTSRY 193
Query: 203 GAWRV-YAASDVGRVLPGGS 221
G V AA RV+ G+
Sbjct: 194 GVAPVGKAALTEFRVVARGN 213
Score = 108 (43.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 29/68 (42%), Positives = 37/68 (54%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTG 332
LV A PR+GRTHQIR+H + G+SI GD Y G+ R LH +++F G
Sbjct: 217 LVEARPRTGRTHQIRVHLAHGGLSIIGDTTYGGIA---APRM---MLHCRTMTF-RAEDG 269
Query: 333 CPVMVQAP 340
PV AP
Sbjct: 270 RPVSATAP 277
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 108 (43.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 33/101 (32%), Positives = 48/101 (47%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLAS-VPCLLAGD-SAESKSGRLSEGTKXXXXXXXXXXX 143
VLYED++L+ ++KP GV V P + S GR+ EG
Sbjct: 79 VLYEDDYLIVIDKPAGVLAHPVKNHFAPSMQELTLSYYRDKGRIFEG-------FYPIYR 131
Query: 144 XDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGP 184
DR+TSG M+I K +A L + +++K Y+AL GP
Sbjct: 132 LDRNTSGPMLIAKFSLIAEMLNNSLRKRQINKIYLALIEGP 172
Score = 107 (42.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 280 SGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQA 339
+GRTHQIR H +G + GD Y G + + LH +SF HP+T + + A
Sbjct: 225 TGRTHQIRAHFAAIGHPLAGDDLYGGKMDL----IERQALHLYYISFPHPITKKTISLYA 280
Query: 340 PLPLWGTEALQSSSK 354
PLP EAL + K
Sbjct: 281 PLPRDFKEALITLKK 295
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 117 (46.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 33/75 (44%), Positives = 39/75 (52%)
Query: 278 PRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN-----GKRYDGH-----ELHAESLSFD 327
P +GRTHQ+R H +G I GD KY G + N G + G LHA SLSF+
Sbjct: 247 PVTGRTHQLRAHMAGIGHPIIGDGKYGGSGQENLGDGWGAQLGGIISKKLHLHARSLSFE 306
Query: 328 HPVTGCPVMVQAPLP 342
HP T V APLP
Sbjct: 307 HPSTRKKVTFTAPLP 321
Score = 96 (38.9 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 32/104 (30%), Positives = 50/104 (48%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKS-GRLSEGTKXXXXXX-XXXXX 143
VL+ D+ ++ +NKP G LA + G S +++ LSE +
Sbjct: 93 VLHRDDDIIVLNKPAG------LA-----VQGGSGQTRHVDGLSEALRFGNDENPRLVHR 141
Query: 144 XDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG-PAP 186
D+DTSGV+V+ ++ + A++L AF K Y AL G P P
Sbjct: 142 LDKDTSGVLVLARTREAAARLTAAFRHRNTRKIYWALVAGVPTP 185
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 107 (42.7 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 274 VRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEW----------NGKRYDGHELHAES 323
VR +GRTHQIR+H ++ + GD Y G + + K + LHA
Sbjct: 223 VRVKLETGRTHQIRVHMAHINFPLVGDPAYGGRFRIPPAASQTMVDSLKNFPRQALHARF 282
Query: 324 LSFDHPVTGCPVMVQAPLP 342
L DHP TG + ++PLP
Sbjct: 283 LELDHPTTGIRMSWESPLP 301
Score = 80 (33.2 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITI-ISGHGRSK 201
D+DT+G+MV+ K+ + ++LV VS+ Y + IG +I I HG+ +
Sbjct: 138 DKDTTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVTAGGKINAPIGRHGQQR 195
Score = 56 (24.8 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 85 DVLYEDEWLVAVNKPQGV 102
D++YED+ ++ +NKP G+
Sbjct: 84 DIVYEDDDILVINKPAGL 101
Score = 53 (23.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 193 IISGHGRSKFGAWRVYAASDVGRVLPGGSVVR--DMVTSFEVLSVNGEGSFKEPSELQEH 250
+ + H RS+ AW D GR+ G+V+R D+V +L + E + + +
Sbjct: 27 LFAEHSRSRLSAW----IKD-GRLTVDGAVIRPRDIVHGGSILELTAEQE-AQGEWIAQD 80
Query: 251 EENNIVVEKKAVL 263
E +IV E +L
Sbjct: 81 IELDIVYEDDDIL 93
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 268 KKNEILVRAFPRSGRTHQIRLHC-QYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSF 326
++N V +P +GRTHQ+R+HC +LG++ + + +Y KR LHAE LSF
Sbjct: 150 EQNRTRVYLYPHTGRTHQLRVHCAHHLGLN--APIVGDDLYGLQDKRLF---LHAEQLSF 204
Query: 327 DHPVTGCPVMVQ 338
HP T P+ Q
Sbjct: 205 AHPYTKQPMTFQ 216
Score = 81 (33.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/98 (28%), Positives = 43/98 (43%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
++Y+D+ +V VNKP + SVP + DS + RL + D
Sbjct: 20 IVYQDDAIVVVNKP------AEFLSVPGVHVHDSVLT---RL-KAQFTQAEGVFALHRLD 69
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
TSG++V + + +L K F V K Y+AL G
Sbjct: 70 MSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEG 107
Score = 37 (18.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 11 FTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPL 53
F LT +A + +K F S A +TQ PL
Sbjct: 78 FALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPL 120
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 118 (46.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 268 KKNEILVRAFPRSGRTHQIRLHC-QYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSF 326
++N V +P +GRTHQ+R+HC +LG++ + + +Y KR LHAE LSF
Sbjct: 150 EQNRTRVYLYPHTGRTHQLRVHCAHHLGLN--APIVGDDLYGLQDKRLF---LHAEQLSF 204
Query: 327 DHPVTGCPVMVQ 338
HP T P+ Q
Sbjct: 205 AHPYTKQPMTFQ 216
Score = 81 (33.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/98 (28%), Positives = 43/98 (43%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
++Y+D+ +V VNKP + SVP + DS + RL + D
Sbjct: 20 IVYQDDAIVVVNKP------AEFLSVPGVHVHDSVLT---RL-KAQFTQAEGVFALHRLD 69
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
TSG++V + + +L K F V K Y+AL G
Sbjct: 70 MSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEG 107
Score = 37 (18.1 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 11 FTLTPKAVPRFRKTFFSLASMSNPTEPTSQNAPQTQQNYPTPL 53
F LT +A + +K F S A +TQ PL
Sbjct: 78 FALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPL 120
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 122 (48.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN------GKRYDGHELHAESLSF 326
LVR P +GRTHQIR+H QY G I D +Y G E++ G + LHA +L F
Sbjct: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLFLHAAALKF 289
Query: 327 DHPVTGCPVMVQAPL 341
HP TG + ++AP+
Sbjct: 290 THPGTGEVMRIEAPM 304
Score = 80 (33.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 26/98 (26%), Positives = 40/98 (40%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
+LYED+ ++ +NKP G ++ G A R E D
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE----------LVHRLD 144
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
RDTSGV+++ K L + + + K Y+AL G
Sbjct: 145 RDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 103 (41.3 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 38/120 (31%), Positives = 55/120 (45%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLAS-----VPCLLAGDSAESK-SGRLSEGTKXXXXXXX 139
VL+ED +V V+KP G+ + V LLA + S G + G
Sbjct: 86 VLHEDGDVVVVDKPAGMVVHPAAGNPGGTLVNALLAHCTDLSGIGGEIRPGI-------- 137
Query: 140 XXXXXDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGR 199
D+DTSGV+V+ KS + L + F DH V + Y+AL G +P+ + I GR
Sbjct: 138 -VHRIDKDTSGVLVVAKSDRAHESLSRQFHDHTVKRVYLALVYG-SPREDKGRIEGAIGR 195
Score = 98 (39.6 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 30/80 (37%), Positives = 38/80 (47%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYD---------GHE-LHAE 322
L+R +GRTHQIR+H G + GD Y G N R G + LHA+
Sbjct: 228 LLRLRLETGRTHQIRVHMAEAGFPLVGDEVYGGAGRINNLRDPVLRKLIRELGRQALHAK 287
Query: 323 SLSFDHPVTGCPVMVQAPLP 342
+L F HPVTG + LP
Sbjct: 288 TLGFVHPVTGEYLEFDTELP 307
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 115 (45.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYD-GHE---LHAESLSFDH 328
LV+A P +GRTHQIR+H QY+G I D +Y G ++ G E LHA ++ F H
Sbjct: 230 LVQASPVTGRTHQIRVHTQYMGHPIAWDDRY-GDRRFDAYTAQFGIERLFLHAANIQFVH 288
Query: 329 PVTGCPVMVQAPLPLWGTEAL 349
P + + + APL +AL
Sbjct: 289 PASEKKLEIHAPLEAHLEQAL 309
Score = 81 (33.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 24/98 (24%), Positives = 38/98 (38%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
++YED+ L+ +NKP G + G + + D
Sbjct: 97 IVYEDDHLLILNKPSGT----------AVHGGSGLHFGAIEALRALRPQARFLELVHRID 146
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
RDTSG++++ K L F + V K Y AL +G
Sbjct: 147 RDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMG 184
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 115 (45.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYD-GHE---LHAESLSFDH 328
LV+A P +GRTHQIR+H QY+G I D +Y G ++ G E LHA ++ F H
Sbjct: 230 LVQASPVTGRTHQIRVHTQYMGHPIAWDDRY-GDRRFDAYTAQFGIERLFLHAANIQFVH 288
Query: 329 PVTGCPVMVQAPLPLWGTEAL 349
P + + + APL +AL
Sbjct: 289 PASEKKLEIHAPLEAHLEQAL 309
Score = 81 (33.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 24/98 (24%), Positives = 38/98 (38%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
++YED+ L+ +NKP G + G + + D
Sbjct: 97 IVYEDDHLLILNKPSGT----------AVHGGSGLHFGAIEALRALRPQARFLELVHRID 146
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
RDTSG++++ K L F + V K Y AL +G
Sbjct: 147 RDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMG 184
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 100 (40.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKR-----------YDGHELHA 321
L+ + +GRTHQIR+H + G + GD Y G + + + + LHA
Sbjct: 249 LIDCWLETGRTHQIRVHMAHAGHGLLGDPVYGGRRKLSPRALSPEAVDAIGAFPRQALHA 308
Query: 322 ESLSFDHPVTGCPVMVQAPLP 342
L F+HP++G + APLP
Sbjct: 309 AVLGFEHPLSGEKLSFSAPLP 329
Score = 99 (39.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/105 (30%), Positives = 45/105 (42%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLAS-----VPCLLA--GDSAESKSGRLSEGTKXXXXXX 138
V+YED+ L+ ++KP G+ + V LLA GD+ G G
Sbjct: 87 VVYEDDDLIVIDKPAGMVVHPAPGTPSGTLVNALLAHCGDNLSGVGGVKRPGI------- 139
Query: 139 XXXXXXDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D+DTSG++V+ KS L F H + Y ALC G
Sbjct: 140 --VHRIDKDTSGLLVVAKSDAAHHGLAAQFAAHSAERHYTALCYG 182
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 124 (48.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 35/81 (43%), Positives = 46/81 (56%)
Query: 262 VLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHA 321
VL+ + K L++A +GRTHQIR+H YLG + GD KY G ++ N LHA
Sbjct: 216 VLE-EFNKGFTLIQAKLLTGRTHQIRVHFSYLGHPVLGDPKY-G-HQNNPFGVKRQMLHA 272
Query: 322 ESLSFDHPVTGCPVMVQAPLP 342
LSF HP +G + APLP
Sbjct: 273 IKLSFIHPRSGELLEFTAPLP 293
Score = 69 (29.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
D++YEDE LV VNK G+ + L ++ LS G
Sbjct: 83 DIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLV-NALLYHCQNLS-GI-GGVLRPGIVHRL 139
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D+DTSG++V+ K+ L + + K + Y + G
Sbjct: 140 DKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHG 178
Score = 44 (20.5 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 219 GGSVVRDMVTSFEVLSVNGEGSFKEPSELQEHEENNIVVEKKA 261
GG ++ ++ LSV E + P ++ +E+ +VV KKA
Sbjct: 59 GGEIIAVLLPPPRELSVKPE---EIPLDIVYEDEDLVVVNKKA 98
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 111 (44.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 280 SGRTHQIRLHCQYLGISIRGDVKYEG--------VYEWNG--KRYDGHELHAESLSFDHP 329
+GRTHQIR+H YL + GD Y G E + +D LHA L F+HP
Sbjct: 230 TGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHP 289
Query: 330 VTGCPVMVQAPLP 342
VTG + AP+P
Sbjct: 290 VTGEELEFHAPVP 302
Score = 81 (33.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 23/99 (23%), Positives = 43/99 (43%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
+++YED+ ++ +NKP+ P D +
Sbjct: 85 NIVYEDDDIIVINKPRDFVVH------PGAGQADKTVLNALLFHYSPIAEVPRAGIVHRL 138
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D+DT+G+MV+ K+ ++LV+A V++ Y A+ IG
Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG 177
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 111 (44.1 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 280 SGRTHQIRLHCQYLGISIRGDVKYEG--------VYEWNG--KRYDGHELHAESLSFDHP 329
+GRTHQIR+H YL + GD Y G E + +D LHA L F+HP
Sbjct: 230 TGRTHQIRVHMAYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHP 289
Query: 330 VTGCPVMVQAPLP 342
VTG + AP+P
Sbjct: 290 VTGEELEFHAPVP 302
Score = 81 (33.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 23/99 (23%), Positives = 43/99 (43%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
+++YED+ ++ +NKP+ P D +
Sbjct: 85 NIVYEDDDIIVINKPRDFVVH------PGAGQADKTVLNALLFHYSPIAEVPRAGIVHRL 138
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D+DT+G+MV+ K+ ++LV+A V++ Y A+ IG
Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIG 177
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 101 (40.6 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYE---------GVYEWNGKRYDGHELHAES 323
L R +GRTHQIR+H ++G S+ GD KY G+ E + + LHA
Sbjct: 229 LARCILHTGRTHQIRVHMSHIGHSVVGDQKYGKNNKKSLRCGIPEV--RNFKRQALHACL 286
Query: 324 LSFDHPVTG 332
L F HP TG
Sbjct: 287 LGFHHPCTG 295
Score = 83 (34.3 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG-PAPK 187
D+DTSG+MVI K+ K L +A + K K Y+AL G P K
Sbjct: 142 DKDTSGLMVIAKTEKAYLVLSQALEEKKFRKEYLALIWGVPTTK 185
Score = 41 (19.5 bits), Expect = 8.9e-08, Sum P(3) = 8.9e-08
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 86 VLYEDEWLVAVNKPQGV 102
++YEDE ++ ++K +
Sbjct: 85 IIYEDEHIIVIDKAPNI 101
>TIGR_CMR|GSU_3160 [details] [associations]
symbol:GSU_3160 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275920 KO:K06175
OMA:FANHSIE RefSeq:NP_954201.1 ProteinModelPortal:Q747V5
GeneID:2686768 KEGG:gsu:GSU3160 PATRIC:22029179
ProtClustDB:CLSK763245 BioCyc:GSUL243231:GH27-3194-MONOMER
Uniprot:Q747V5
Length = 250
Score = 95 (38.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
++L+ D++LVAV+KP G+ ++ P D E++ L E
Sbjct: 2 EILFRDQYLVAVHKPAGL----LVHRSPI----DRHETRFA-LQEVRDLLGRRVYPVHRL 52
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP 186
D+ TSGV+V A L AF +V+KTY+A+ G P
Sbjct: 53 DKPTSGVLVFALDPATARSLGDAFAGGRVNKTYLAVTRGIVP 94
Score = 90 (36.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKY-EGVYEWNGKRYDGHE---LHAESLSFDH 328
L P +GR HQ+R H +++ I GD Y EG + + G LHA LS H
Sbjct: 149 LAELTPHTGRRHQLRRHMKHIFHPIIGDTTYGEGRHNRFFREEFGCGRLLLHAAELSLPH 208
Query: 329 PVTGCPVMVQAP 340
P +G + + AP
Sbjct: 209 PASGETLTIAAP 220
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 91 (37.1 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 280 SGRTHQIRLHCQYLGISIRGDVKYEG----------VYEWNGKRYDGHELHAESLSFDHP 329
+GRTHQIR+H ++ + GD Y G + +++D LHA L HP
Sbjct: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289
Query: 330 VTGCPVMVQAPLP 342
++G + AP+P
Sbjct: 290 ISGIEMEWHAPIP 302
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D+DT+G+MV+ K+ ++LV++ ++++ Y A+ IG
Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177
Score = 55 (24.4 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 85 DVLYEDEWLVAVNKPQ 100
D++YEDE ++ +NKP+
Sbjct: 85 DIVYEDEDIIIINKPR 100
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 93 (37.8 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 28/102 (27%), Positives = 51/102 (50%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
V+YED+ ++ +NKP G+ SV ++ K R E K D
Sbjct: 93 VVYEDDDVLIINKPAGI---SVQGGTKVKISISDIVDKI-RDGESMKIVHRL-------D 141
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPK 187
+DTSG++++ ++ +++ ++ F + +V K Y+AL G PK
Sbjct: 142 KDTSGILMLARNARISRLIMHEFKNRRVEKKYLALTQG-IPK 182
Score = 92 (37.4 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTG 332
L+ P +GR HQIR+H ++G SI GD KY E D +LHA LS + +
Sbjct: 228 LLELKPITGRKHQIRIHLSHIGCSIIGDKKYGKFCEH--VLNDNLQLHAYFLSIN--IGE 283
Query: 333 CPVMVQAPLPLWGTEALQSSSK 354
+ P+P + +A+ K
Sbjct: 284 KKIDFTVPVPSYMKDAIMQLEK 305
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 122 (48.0 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 255 IVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHC-QYLGISIRGDVKY-EGVYEWNGK 312
I + + VL++ K+ + +P +GRTHQ+R+HC L I GD KY + + N K
Sbjct: 605 IAITEYKVLESSLTKH-CFISLWPETGRTHQLRVHCASVLNTPIIGDPKYGDKESDSNLK 663
Query: 313 R---YDGH-ELHAESLSFDHPVTGCPVMVQAPLP 342
Y LHA + F HP T + + APLP
Sbjct: 664 DLLPYPSKLHLHARRIEFIHPFTNKKIDISAPLP 697
Score = 70 (29.7 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESK--SGRLSEGTKXXXXXXXXXXX 143
VLY+DE ++ +NKPQG+ SV G + +K LS
Sbjct: 430 VLYKDEHIIVLNKPQGL-------SVQ----GGTGLNKHLDMMLSHLRFEKDENPKLVHR 478
Query: 144 XDRDTSGVMVITKSHKVASKLVKAF 168
DR+TSG++++ +S AS + K F
Sbjct: 479 LDRNTSGILILGRSKLAASAMTKKF 503
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 109 (43.4 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 280 SGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQA 339
+GRTHQIR+H +G + GD Y W +++ LHA LSF P G V +
Sbjct: 228 TGRTHQIRVHFAAIGHPVAGDAVYGQKETWLKRQF----LHAHRLSFSLPSNGQNVEFSS 283
Query: 340 PLPLWGTEALQS 351
PLP EAL++
Sbjct: 284 PLPPDLEEALKT 295
Score = 73 (30.8 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 34/156 (21%), Positives = 65/156 (41%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVP-CLLAGDSA-ESKSGRLSEGTKXXXXXXXXXX 142
+++++D+ L+ +NKP G+ L+ G A E + + +
Sbjct: 79 EIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPEMEDFDDPLRPGIVHRL--- 135
Query: 143 XXDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKF 202
D+DTSG++++ K+ + + L F + V K Y+ L G + I + GR
Sbjct: 136 --DKDTSGLLLVAKNREALANLSAQFKERTVRKYYLTLVQGELHPAEGF-IEAPLGRDPQ 192
Query: 203 GAWRVYAASDVGRVLPGGSVVRDMVTSFEVLSVNGE 238
++ S+ GR G V + + +L V E
Sbjct: 193 NRQKIAVVSN-GRPARTGYKVLRYIQGYSLLEVKLE 227
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 95 (38.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
+++Y+DE ++A+NKP GV +V + S ++ G +
Sbjct: 77 NIIYKDENIIAINKPAGV---NVQGGTKVSI---SLSDLLNKIIPGEQLHIVHRL----- 125
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG-PAPKWKRITI 193
DRDTSGV++I + +A L + +V K YIA+ G PA IT+
Sbjct: 126 DRDTSGVLIIARGQSIARILSEELRFRRVRKEYIAVTKGVPAFSKGEITM 175
Score = 88 (36.0 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 252 ENNIVVEKKAVLDA--DAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEW 309
E I E K V +K++ +++ + P +GR HQ+R+H I GD KY E
Sbjct: 187 ETLIPKEAKTVFSVLQSSKRHAVMLLS-PVTGRKHQLRIHLSQFCCPIIGDTKYSKDTEV 245
Query: 310 NGKRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
++++ LHA SF + ++++AP+P
Sbjct: 246 --QQHNSLHLHAFRTSFQ--LFDREIVIKAPVP 274
>TIGR_CMR|CPS_0536 [details] [associations]
symbol:CPS_0536 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_267294.1 ProteinModelPortal:Q489H0 STRING:Q489H0
GeneID:3520534 KEGG:cps:CPS_0536 PATRIC:21464415
HOGENOM:HOG000222064 OMA:MAEFWWG ProtClustDB:CLSK896118
BioCyc:CPSY167879:GI48-631-MONOMER Uniprot:Q489H0
Length = 567
Score = 112 (44.5 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 239 GSFKE-PSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQY---LG 294
G F + P ++ HE +++ +++ + +P +GRTHQ+R+HC + L
Sbjct: 468 GDFDDRPKQMVCHEHGKYAETHWQLIEEVDNTSKLFL--YPITGRTHQLRMHCAHPDGLN 525
Query: 295 ISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVT 331
+ I GD Y G D LHA+ LSF HP+T
Sbjct: 526 LPIIGDSLY-------GHSADRLHLHAQRLSFTHPIT 555
Score = 75 (31.5 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
+++++DE +V VNKP G L SVP DS + R+
Sbjct: 365 EIVFQDEHVVVVNKPAG------LLSVPGKSIKDSVYT---RIKTQFPQASGGLIVHRL- 414
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPK 187
D TSG++++ + + L + F + +++K Y+A G K
Sbjct: 415 DMATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEK 457
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 97 (39.2 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 27/80 (33%), Positives = 37/80 (46%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHE----------LHAE 322
L++ +GRTHQIR+H Y+G SI GD KY G +Y LHA
Sbjct: 244 LIKCRIHTGRTHQIRVHMSYIGNSIIGDQKY-GKNNSKSVKYAKQSTIINTLKRQALHAY 302
Query: 323 SLSFDHPVTGCPVMVQAPLP 342
L F HP + + + +P
Sbjct: 303 KLGFTHPTSNTYIEFHSYIP 322
Score = 85 (35.0 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 29/103 (28%), Positives = 42/103 (40%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
V+YED ++ +NK G+ + L LS K D
Sbjct: 98 VVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAHYGNSLSHVGKATRPGIIHRL--D 155
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG-PAPK 187
+DTSG+MVI K+ K L ++ K Y+A+ G P PK
Sbjct: 156 KDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPK 198
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 94 (38.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 251 EENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY---EGVY 307
EE + + V+ + K +VR P +GR+HQ+R+H Q LG I GD Y E V
Sbjct: 130 EEGRDSLTRYQVVKREEKTT--VVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEAV- 186
Query: 308 EWNGKRYDGHELHAESLSFDHP 329
E+ D +LHA L F HP
Sbjct: 187 EFA----DRLQLHAAELCFYHP 204
Score = 78 (32.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 30/95 (31%), Positives = 40/95 (42%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
DV+YEDE ++A NKP G L SVP + +S RL +
Sbjct: 15 DVIYEDEHIIAANKPSG------LLSVPGRPV-EHYDSMWARLVDYCPDVKVVHRL---- 63
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIA 179
D TSG+++ K + S L K F K Y A
Sbjct: 64 DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYA 98
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 94 (38.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 251 EENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY---EGVY 307
EE + + V+ + K +VR P +GR+HQ+R+H Q LG I GD Y E V
Sbjct: 130 EEGRDSLTRYQVVKREEKTT--VVRLIPITGRSHQLRVHMQSLGHPIVGDDLYAPPEAV- 186
Query: 308 EWNGKRYDGHELHAESLSFDHP 329
E+ D +LHA L F HP
Sbjct: 187 EFA----DRLQLHAAELCFYHP 204
Score = 78 (32.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 30/95 (31%), Positives = 40/95 (42%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
DV+YEDE ++A NKP G L SVP + +S RL +
Sbjct: 15 DVIYEDEHIIAANKPSG------LLSVPGRPV-EHYDSMWARLVDYCPDVKVVHRL---- 63
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIA 179
D TSG+++ K + S L K F K Y A
Sbjct: 64 DMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYA 98
>UNIPROTKB|G4MYD1 [details] [associations]
symbol:MGG_08117 "DRAP deaminase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CM001232 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 KO:K15454 RefSeq:XP_003715073.1
ProteinModelPortal:G4MYD1 EnsemblFungi:MGG_08117T0 GeneID:2678399
KEGG:mgr:MGG_08117 Uniprot:G4MYD1
Length = 487
Score = 95 (38.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 268 KKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFD 327
K+ +VR P +GRTHQIR+H Q+LG I D Y W G ++ A SL+ D
Sbjct: 308 KQGYSIVRCLPVTGRTHQIRVHLQHLGHPIENDPIYANYKVW-GLNLGANDGDA-SLNSD 365
Query: 328 HPV 330
+
Sbjct: 366 EDI 368
Score = 86 (35.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 28/101 (27%), Positives = 43/101 (42%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
VL+ED+ ++ +NKP G+ P AG + + + D
Sbjct: 154 VLHEDDEMIVINKPSGM---------PVHPAGRYNFNSVVEVMRSERSRDFKAYPCNRLD 204
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP 186
R TSG+M I K+ + A K+ + V K Y+A IG P
Sbjct: 205 RLTSGIMFIAKTPQAACKMGEQIMGRTVRKEYLARVIGRFP 245
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 99 (39.9 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 31/79 (39%), Positives = 41/79 (51%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKY------EGVYEWNGKRYDGHELHAESLSF 326
+V A P +GRTHQIR+H + G I GD KY + E GKR LHA L+
Sbjct: 234 MVEAKPVTGRTHQIRVHTLHAGHCIAGDSKYGDDDFTREIRELGGKRLF---LHAYMLTV 290
Query: 327 DHPVTGCPVMVQAPLP-LW 344
P G + +QAP+ +W
Sbjct: 291 PLP-DGGELKLQAPVDEMW 308
Score = 76 (31.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 40/159 (25%), Positives = 62/159 (38%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
+++ED+ L+ +NKP G+ + G + D
Sbjct: 97 IVFEDKALIVINKPAGI----------AVHGGSGLNFGVIEAFRQLRPDAKELELVHRLD 146
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG---PAPKWKRITIISGHGRSKF 202
RDTSG+++I K + L A V K Y+AL G A K R ++ + RS
Sbjct: 147 RDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWATAVKQVRAPLLKSNLRS-- 204
Query: 203 GAWRVYAASDVGR-VLPGGSVVR---DMVTSFEVLSVNG 237
G R+ ++ G+ L V+R D T E V G
Sbjct: 205 GE-RMVEVNEEGKEALTVFKVLRRFGDFATMVEAKPVTG 242
>TIGR_CMR|CPS_3649 [details] [associations]
symbol:CPS_3649 "tRNA pseudouridine synthase C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 HOGENOM:HOG000275920
KO:K06175 RefSeq:YP_270317.1 ProteinModelPortal:Q47Y03
STRING:Q47Y03 GeneID:3523321 KEGG:cps:CPS_3649 PATRIC:21470223
OMA:EIANAVC BioCyc:CPSY167879:GI48-3671-MONOMER Uniprot:Q47Y03
Length = 304
Score = 92 (37.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGK--RYDGHE---LHAESLSFD 327
L+ P +GR HQIR H +L I GD+ Y G + N + G + L A+SL F+
Sbjct: 216 LIEVRPITGRRHQIRRHLAHLRHPILGDINY-GDNKQNPFFIEHFGFKRLMLIAKSLEFN 274
Query: 328 HPVTGCPVMVQAP 340
HP+ + + AP
Sbjct: 275 HPINNDRIKISAP 287
Score = 83 (34.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 85 DVLYEDEWLVAVNKPQGVYCE-SVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXX 143
D+LY+DE++VAV+KP G++ S + A + G+
Sbjct: 22 DILYQDEYMVAVDKPAGLFVHRSYMDKDEIYFALQLVRDQVGQY----------VYPVHR 71
Query: 144 XDRDTSGVMVITKSHKVASKLVKAFTD 170
DR TSGV++ + VA+KL +AF +
Sbjct: 72 LDRPTSGVLLFALTKDVATKLSEAFAN 98
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 89 (36.4 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 29/85 (34%), Positives = 41/85 (48%)
Query: 269 KNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY---EGVYEWN-GKRYDGHELHAESL 324
KN L+ FP +GR HQIR +G + D KY + EW+ K+ LHA +
Sbjct: 223 KNTSLIELFPLTGRKHQIRSQMASIGHPVLNDGKYGRRKAFLEWSVNKKLC---LHACEI 279
Query: 325 SFDHPVTGCPVMVQAPLPLWGTEAL 349
F+ + G + V A LP+ E L
Sbjct: 280 EFE--LFGKVIKVTAELPVHFAENL 302
Score = 85 (35.0 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 28/106 (26%), Positives = 50/106 (47%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
+LYEDE ++A++KP G +S G +A + K D
Sbjct: 93 MLYEDENVLAISKPFGFPVQSGY--------GITAS-----IDNAMKSINPEYRVVHRLD 139
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRI 191
+ T+GV++ K+ A +L + F++ V K+Y+A+ IG + K +
Sbjct: 140 KHTTGVLIFAKTLDAARELWRLFSNRLVKKSYLAIVIGELKEKKGV 185
>UNIPROTKB|O07166 [details] [associations]
symbol:Rv3300c "Pseudouridine synthase" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005886
GenomeReviews:AL123456_GR GO:GO:0003723 EMBL:BX842582
HOGENOM:HOG000275916 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
KO:K06177 EMBL:CP003248 PIR:F70533 RefSeq:NP_217817.1
RefSeq:YP_006516777.1 ProteinModelPortal:O07166 SMR:O07166
EnsemblBacteria:EBMYCT00000003755 GeneID:13318123 GeneID:887958
KEGG:mtu:Rv3300c KEGG:mtv:RVBD_3300c PATRIC:18155955
TubercuList:Rv3300c OMA:FFRMHEV ProtClustDB:CLSK792416
Uniprot:O07166
Length = 305
Score = 111 (44.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 30/84 (35%), Positives = 39/84 (46%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGH-ELHAESLSFDHPVT 331
L R P +GRTHQ+R+H LGI I GD Y V + +L A+ + FD P+T
Sbjct: 218 LYRLTPTTGRTHQLRVHMAALGIPIMGDPLYPNVISVAAHDFSTPLQLLAQRIEFDDPLT 277
Query: 332 GCP-------VMVQAPLPLWGTEA 348
G + A LP W A
Sbjct: 278 GSHREFASTRTLTGATLPTWSAAA 301
Score = 60 (26.2 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 31/117 (26%), Positives = 48/117 (41%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
VL++D +V V+KP LA++P A++ RL + D
Sbjct: 87 VLHQDADIVVVDKPH------FLATMP--RGRHVAQTALVRLRR--ELGLPELSPAHRLD 136
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALC-IGPA---PKWKRITIISGHG 198
R T+GV++ T +V F V KTY+A + P P+ R I+ G
Sbjct: 137 RLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIVKRRG 193
Score = 42 (19.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 209 AASDVGRVLPGGSVV 223
A D G VLP GSVV
Sbjct: 55 AVVDSGTVLPPGSVV 69
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 86 (35.3 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 29/102 (28%), Positives = 46/102 (45%)
Query: 86 VLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXD 145
+LY+D+ ++ VNKP G L SVP G E K ++ + D
Sbjct: 16 ILYQDDHIMVVNKPSG------LLSVP----GRLEEHKDSVMTR-IQRDYPQAESVHRLD 64
Query: 146 RDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG-PAP 186
TSGV+V+ + +L + F + + K Y+A G P+P
Sbjct: 65 MATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSP 106
Score = 83 (34.3 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 27/74 (36%), Positives = 34/74 (45%)
Query: 267 AKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSF 326
A N V P +GR+HQ+R+H LG I GD Y E LHAE L+
Sbjct: 145 AADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASP-EARAMA-PRLLLHAEMLTI 202
Query: 327 DHPVTGCPVMVQAP 340
HP G + +AP
Sbjct: 203 THPAYGNSMTFKAP 216
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 101 (40.6 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 266 DAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGK 312
D N +V+ P +GRTHQIR+H Q+LG I D Y + W GK
Sbjct: 302 DPITNTSVVKCHPLTGRTHQIRVHLQFLGYPIANDPIYSSEFVW-GK 347
Score = 77 (32.2 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP 186
DR TSG+M + KS K A+ ++ D V+K YIA G P
Sbjct: 221 DRLTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVKGEFP 262
>UNIPROTKB|Q9KRH4 [details] [associations]
symbol:VC1668 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 89 (36.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGA 204
D+ TSG++++ ++ AS+L + F KV K Y+A+ PK K+ I RS+ +
Sbjct: 51 DKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIG-SKKPKKKQGLICGDMERSRRSS 109
Query: 205 WRV 207
W++
Sbjct: 110 WKL 112
Score = 78 (32.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 238 EGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISI 297
E S + +L +EN + + A A E L P +G+THQIR+ + +G +I
Sbjct: 103 ERSRRSSWKLVNSQENPAITQ---FFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAI 159
Query: 298 RGDVKYEGVYEWNGKRYDGHELHAESLSFDH 328
GD Y E + + Y LHA +L F +
Sbjct: 160 VGDPIYNTADE-SDRGY----LHAFALRFTY 185
>TIGR_CMR|VC_1668 [details] [associations]
symbol:VC_1668 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 89 (36.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRSKFGA 204
D+ TSG++++ ++ AS+L + F KV K Y+A+ PK K+ I RS+ +
Sbjct: 51 DKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIG-SKKPKKKQGLICGDMERSRRSS 109
Query: 205 WRV 207
W++
Sbjct: 110 WKL 112
Score = 78 (32.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 238 EGSFKEPSELQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISI 297
E S + +L +EN + + A A E L P +G+THQIR+ + +G +I
Sbjct: 103 ERSRRSSWKLVNSQENPAITQ---FFSAAAATGERLFLCKPHTGKTHQIRVALKSIGSAI 159
Query: 298 RGDVKYEGVYEWNGKRYDGHELHAESLSFDH 328
GD Y E + + Y LHA +L F +
Sbjct: 160 VGDPIYNTADE-SDRGY----LHAFALRFTY 185
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 96 (38.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/102 (32%), Positives = 47/102 (46%)
Query: 244 PSELQEHEENNIVVEKKAVL---DADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGD 300
P + +HE + VL D+ ++ L+ P +GR+HQ+R+H LG I GD
Sbjct: 126 PKQKVDHENGKKSLTHYRVLSHNDSIDEQANTLLELTPITGRSHQLRVHMLALGHPILGD 185
Query: 301 VKYEGVYEWNGKRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
Y E R + +LHA LS HP T + AP P
Sbjct: 186 RLY-APEEALTMR-NRLQLHALKLSLFHPRTEQAITFDAPCP 225
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/95 (24%), Positives = 40/95 (42%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
D++Y+D+ +V +NK G+ SVP G E + L +
Sbjct: 18 DIIYQDDDIVVLNKASGIL------SVP----GRLPEHQDC-LQNRVQRVLPTATIVHRL 66
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIA 179
D TSG+M++ + + + F K K+Y+A
Sbjct: 67 DMATSGIMIMALNKPAHVAISRQFEQRKTQKSYLA 101
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 94 (38.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/79 (34%), Positives = 37/79 (46%)
Query: 274 VRAFPRSGRTHQIRLHCQYLGISIRGDVKYE---GV-------YEWNGKRYDGHELHAES 323
+R +GRTHQIR+H ++ + GD Y G+ + K LHA +
Sbjct: 229 IRVQLETGRTHQIRVHMAHIHHPLAGDPVYGSHVGIPVHLSDPLQTALKTLKRQALHAAT 288
Query: 324 LSFDHPVTGCPVMVQAPLP 342
L F HPV P+ APLP
Sbjct: 289 LQFSHPVDQRPMACHAPLP 307
Score = 77 (32.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXX 144
DV+YEDE L+ +NKP G+ P D + + +
Sbjct: 90 DVIYEDETLLVINKPVGLIVH------PGAGVRDQTLINALLHYDPSLSVVPRAGIIHRL 143
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D+DTSG+++I ++ L+KA ++ + Y A+ G
Sbjct: 144 DKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKG 182
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 97 (39.2 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKY-EGVYEWNGKRYDGHELHAES 323
L+ A P +GRTHQIR+H +LG I GD KY + V+ + Y L S
Sbjct: 225 LIEAKPLTGRTHQIRVHAAHLGYPIAGDEKYGDKVFNREMRNYGLRRLFLHS 276
Score = 63 (27.2 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
DR+TSG +++ K L T KV K Y+ L G
Sbjct: 138 DRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKG 176
Score = 43 (20.2 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 86 VLYEDEWLVAVNKPQGV 102
+LYE+ L+ ++KP G+
Sbjct: 89 ILYEEADLLVIDKPAGL 105
>POMBASE|SPAC18B11.02c [details] [associations]
symbol:SPAC18B11.02c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=ISO] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PomBase:SPAC18B11.02c GO:GO:0005829
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 KO:K15454 OrthoDB:EOG4BK8C8
PIR:T37912 RefSeq:NP_592881.1 ProteinModelPortal:Q09709
STRING:Q09709 EnsemblFungi:SPAC18B11.02c.1 GeneID:2542607
KEGG:spo:SPAC18B11.02c OMA:YRKNTVV NextBio:20803656 Uniprot:Q09709
Length = 394
Score = 91 (37.1 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWN---GKRYDG 316
LV P +GRTHQ+R+H QYLG I D Y W GK +G
Sbjct: 242 LVLCKPLTGRTHQLRVHLQYLGYPIANDPIYANKRVWGPSLGKNGEG 288
Score = 68 (29.0 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAP 186
DR TSG+M +KS K A ++ + K Y+A IG P
Sbjct: 156 DRLTSGLMFFSKSPKAAEEMRVHMISKSLKKEYVARVIGEFP 197
Score = 47 (21.6 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 86 VLYEDEWLVAVNKPQGV 102
+++EDE V ++KP GV
Sbjct: 107 IVHEDESYVVIDKPAGV 123
>TIGR_CMR|CJE_0808 [details] [associations]
symbol:CJE_0808 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
RefSeq:YP_178812.1 ProteinModelPortal:Q5HV73 STRING:Q5HV73
GeneID:3230758 KEGG:cjr:CJE0808 PATRIC:20043361
HOGENOM:HOG000275921 OMA:YITSEEI ProtClustDB:CLSK872473
BioCyc:CJEJ195099:GJC0-823-MONOMER Uniprot:Q5HV73
Length = 250
Score = 74 (31.1 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 268 KKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY 303
+ + L + ++GRTHQIR+H +++ + GD KY
Sbjct: 173 QSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKY 208
Score = 74 (31.1 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D++TSGV+++ K ++ F H+V K+YIA+ G
Sbjct: 93 DKETSGVILLCKDEDFRKLCIEEFKKHRVYKSYIAVLDG 131
Score = 50 (22.7 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 86 VLYEDEWLVAVNKPQGVYCESV 107
+++ED+ ++A+NKP E +
Sbjct: 59 IIFEDDKIIAINKPYAYVSEDL 80
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 99 (39.9 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 273 LVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHEL 319
+V+ PR+GRTHQIR+H QYLG I D Y + W ++ G ++
Sbjct: 270 VVKCLPRTGRTHQIRVHLQYLGYPIVNDPIYN-MEAWGPEKGKGGKI 315
Score = 67 (28.6 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPK 187
DR TSGV++ K+ +V+ ++ + + ++ K Y+ +G P+
Sbjct: 185 DRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCRVVGEFPE 227
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 93 (37.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 252 ENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNG 311
+ + V + D D + ++L++ P +GRTHQ+R+HC +G I GD Y +
Sbjct: 145 QTEVTVLEYGTYDGD-QVTKVLLQ--PLTGRTHQLRVHCSAIGHPIVGDYTYS--LRTDN 199
Query: 312 KRYDGHELHAESLSFDHPVTGCPVMVQAPLP 342
Y LHA L P+ P+ V AP P
Sbjct: 200 SPYR-MMLHAYFLHI--PLHNEPIHVTAPDP 227
Score = 66 (28.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG 183
D TSG + + + A + + F D +V+K Y+AL G
Sbjct: 67 DFSTSGALCVALNKAAAGQAYRCFKDRRVTKAYLALVRG 105
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 94 (38.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/52 (46%), Positives = 28/52 (53%)
Query: 280 SGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAESLSFDHPVT 331
SGRTHQIRLH + +G + GD Y G+ H L A SL F HP T
Sbjct: 230 SGRTHQIRLHMKSIGCPVVGDKLY-GLNRDADLCAPHHALWAYSLQFRHPFT 280
Score = 65 (27.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 85 DVLYEDEWLVAVNKPQGVYCESVLASVPCLLAGDSAES-KSGRLSEGTKXXXXXXXXXXX 143
DV YED+ L+ + KP G+ + + L + +LS
Sbjct: 80 DVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEKLSS---LDSSRPGIVHR 136
Query: 144 XDRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIAL 180
D+DT+G +++ K++ L + + + + Y+AL
Sbjct: 137 LDKDTAGFLIVAKTNPAHLSLSQMIKEGVIRREYLAL 173
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 77 (32.2 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 278 PRSGRTHQIRLHCQYLGISIRGDVKY 303
P +GRTHQ+R+HC L + GD+ Y
Sbjct: 168 PLTGRTHQLRVHCSALSHPVVGDLTY 193
Score = 72 (30.4 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
D TSG + + + A K F + +V+K Y+AL G + R+TI GR+
Sbjct: 67 DFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQE-SRMTINYAIGRN 121
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 329 PVTGCPVMVQAPLPLWG---TEALQSS 352
P GCPV P P TEA Q+S
Sbjct: 262 PTEGCPVPCSTPTPPSKPPETEAQQAS 288
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 84 (34.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 270 NEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY 303
+++L++ P +GRTHQ+R+HC LG + GD+ Y
Sbjct: 162 SKVLLK--PLTGRTHQLRVHCSALGHPVVGDLTY 193
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
D TSG + + + A + F + +V+K Y+AL G + R+TI GR+
Sbjct: 67 DFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQE-SRVTISHAIGRN 121
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 84 (34.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 278 PRSGRTHQIRLHCQYLGISIRGDVKY 303
P +GRTHQ+R+HC LG I GD+ Y
Sbjct: 168 PLTGRTHQLRVHCSALGHPIVGDLTY 193
Score = 72 (30.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
D TSG + + + A + F D +V+K Y+AL G + R+TI G++
Sbjct: 67 DFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHIQE-SRVTISYAIGKN 121
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 85 (35.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 270 NEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY 303
+++L++ P +GRTHQ+R+HC LG I GD+ Y
Sbjct: 162 SKVLLK--PLTGRTHQLRVHCSALGHPIVGDLTY 193
Score = 70 (29.7 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
D TSG + + + A K F + +V+K Y+AL G + ++TI GR+
Sbjct: 67 DFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQE-SQVTINYAIGRN 121
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 85 (35.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 270 NEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKY 303
+++L++ P +GRTHQ+R+HC LG I GD+ Y
Sbjct: 162 SKVLLK--PLTGRTHQLRVHCSALGHPIVGDLTY 193
Score = 70 (29.7 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
D TSG + + + A K F + +V+K Y+AL G + ++TI GR+
Sbjct: 67 DFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQE-SQVTINYAIGRN 121
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 84 (34.6 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 278 PRSGRTHQIRLHCQYLGISIRGDVKY 303
P +GRTHQ+R+HC LG I GD+ Y
Sbjct: 168 PLTGRTHQLRVHCSALGHPIVGDLTY 193
Score = 71 (30.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIGPAPKWKRITIISGHGRS 200
D TSG + + + A + F D +V+K Y+AL G + R+TI G++
Sbjct: 67 DFSTSGALCVALNKAAAGSAYRCFKDRRVTKAYLALVRGHVQE-SRMTISYAIGKN 121
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 105 (42.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 55/200 (27%), Positives = 81/200 (40%)
Query: 145 DRDTSGVMVITKSHKVASKLVKAFTDHKVSKTYIALCIG-PAPKWKRITIISGHGRSKFG 203
D+ T+G++V+ K + L + F H + + Y++L G P+P RI I G S
Sbjct: 234 DKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSN-- 291
Query: 204 AWRVYAASDVGRVLPGGSVVRDMVTSFEVLSV-NGEGSFKEPSELQEHEENNIVVEKKAV 262
R+ A+ G V GG R + ++V+ G GS L+ + I K
Sbjct: 292 --RIRMAAIPGGVR-GGRA-RHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAK-Y 346
Query: 263 LDADAKKNEILVRAFPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWNGKRYDGHELHAE 322
+ +E+ G T + L +S R D E + E R D LHA
Sbjct: 347 MGVPLLGDEVY-------GGTKSMALSLLQKRVS-RSD--QEEIIELIS-RMDRPCLHAI 395
Query: 323 SLSFDHPVTGCPVMVQAPLP 342
L F HP TG V P P
Sbjct: 396 VLGFTHPCTGEIVKFSCPPP 415
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 85 DVLYEDEWLVAVNKP 99
D++YED+ ++ VNKP
Sbjct: 149 DIVYEDKHVLVVNKP 163
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 86 (35.3 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 34/149 (22%), Positives = 60/149 (40%)
Query: 39 SQNAPQTQQNYPTPLSPPLPAISKDIELTXXXXXXXXXXXXXXXXXDVLYEDEWLVAVNK 98
+Q Q + P SP + + + T VL++D+ LV +NK
Sbjct: 53 AQKQEQKTKKQLAPTSPVQRRVHELVRFTQQLQRVHPNVLAKALSRGVLHQDKDLVVINK 112
Query: 99 PQGVYCESVLASVPCLLAGDSAESKSGRLSEGTKXXXXXXXXXXXXDRDTSGVMVITKSH 158
P G+ C+ D + ++ G K D++T+GVMV+
Sbjct: 113 PYGLPVHGGPGVQLCI--SDVLPILA-KMLHGHKAEPLHLCHRL--DKETTGVMVLAWEK 167
Query: 159 KVASKLVKAFTDHKVSKTYIALCIG-PAP 186
+VA ++ + F +V+K Y A+ + P P
Sbjct: 168 EVAHQVQEFFRTRQVAKKYWAITVRVPVP 196
Score = 66 (28.3 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 247 LQEHEENNIVVEKKAVLDADAKKNEILVRAFPRSGRTHQIRLHCQY-LGISIRGDVKYEG 305
++ + +I V + VL + + LV P +G HQ+R+H + L I GD KY
Sbjct: 235 VRSNRNAHIAVTQYHVLSSTL--SSALVELQPITGIKHQLRVHLSFGLNCPILGDHKYS- 291
Query: 306 VYEWN 310
+WN
Sbjct: 292 --DWN 294
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 325 0.00087 116 3 11 22 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 58
No. of states in DFA: 617 (66 KB)
Total size of DFA: 234 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.05u 0.11s 27.16t Elapsed: 00:00:01
Total cpu time: 27.06u 0.11s 27.17t Elapsed: 00:00:01
Start: Mon May 20 20:05:47 2013 End: Mon May 20 20:05:48 2013