BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018576
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/348 (56%), Positives = 252/348 (72%), Gaps = 5/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
+++ +A QLA +VLPM +++ EL + +II KAGPGA++S +IA+QLPT N DAP M
Sbjct: 17 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVM 76
Query: 70 LDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
LDR+LRLLA Y ++ CS+ DG +R Y L +V+KY V N+DGVS+ M QDKV
Sbjct: 77 LDRMLRLLACYIILTCSVRTQQDGK-VQRLYGLATVAKYLVKNEDGVSISALNLMNQDKV 135
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW HLKDA+L+GGIPFN+A+GM AFEY DPRFNK FN M +H+++ M ILE+Y
Sbjct: 136 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
GF +K LVDVGG G + I SKYP IKGINFD PHVIE AP +P +EHV GDMF S
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 255
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
+PK DA+F+KWI HDW DEHCLK LKNCY+++P++GKVIV E +LP P++S+ +K H
Sbjct: 256 IPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVH 315
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
IDV+M+ NPGGKERT+ EF LA GAGF G + N ++MEF K
Sbjct: 316 IDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/348 (50%), Positives = 237/348 (68%), Gaps = 5/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTK-NKDAPT 68
+ + +A QLA +VLPM ++ ELG+ +I+ AG G L+ +++AA+LP+ N +AP
Sbjct: 18 EDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPD 76
Query: 69 MLDRILRLLASYSVVECSLD-GSGAR--RRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
M+DRILRLLASY+VV C ++ G R R Y V K+ PN+DGVS+ M QDKV
Sbjct: 77 MVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKV 136
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW +LKDA+L+GGIPFN+A+GM AFEY DPRFN+ FN M NH+ +I +LE Y
Sbjct: 137 LMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELY 196
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
GF + LVDVGG +G T+ AI + YP IKG+NFD PHVI AP P + HV GDMF+
Sbjct: 197 HGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKE 256
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VP GD I +KWILHDW D+HC LLKNCY ++P GKV++V+ +LP P + S+ H
Sbjct: 257 VPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFH 316
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+D++M+ NPGG+ER + EF LA GAGF+G++S + N W +EF K
Sbjct: 317 VDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 230/348 (66%), Gaps = 4/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKA-GPGAKLSASDIAAQLPTKNKDAPT 68
+++ +A QLA VLPMA++A EL + +I+ K+ P +S ++IAAQLPT N +AP
Sbjct: 19 EEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPV 78
Query: 69 MLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
MLDR+LRLLASYSVV +L R Y L V K+ N+DGVSL P L + DKV
Sbjct: 79 MLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKV 138
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
LE W +LKDAILEGGIPFN+A+GM+ F+Y D R NK FN M +++++ M ILE Y
Sbjct: 139 LLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
GF + +VDVGG G I +KYP I INFD PHVI+ AP +EH+ GDMF
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDG 258
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VPKGDAIF+KWI HDW DEHCLKLLKNCY ++P+ GKVIV E +LP P+ SI +K H
Sbjct: 259 VPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIH 318
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
D LM+ NPGGKERT+ EF LA +GF G + N +VMEF K
Sbjct: 319 TDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 155/353 (43%), Positives = 212/353 (60%), Gaps = 9/353 (2%)
Query: 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGP-GAKLSASDIAAQLP--TKNKD 65
D + A L V P + A +L +F+II KA P GA +S S+IA++LP T++ D
Sbjct: 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD 80
Query: 66 APTMLDRILRLLASYSVVECS---LDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQ 122
P LDR+LRLLASYSV+ + ++ GA R Y L+ V KY VP++ L +
Sbjct: 81 LPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVFLESWSHLKDAILEGGIP-FNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNI 181
L+ W + K+A+++ I F HG+ +E+ D + N+ FN +M + + M +
Sbjct: 141 YPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRM 200
Query: 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGD 241
LE Y GF I LVDVGG G L+ I SKYP IKGINFD P VIE+AP IEHV GD
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260
Query: 242 MFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301
MF SVP+GDA+ LK + H+W DE C++ L NC+K++ +GKVI+VE +LPE PNTS ESK
Sbjct: 261 MFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 302 SNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGN-FWVMEFYK 353
S +D LM GG+ERT+ ++ L+ +GFS + N VMEFYK
Sbjct: 321 LVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/353 (42%), Positives = 203/353 (57%), Gaps = 9/353 (2%)
Query: 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGP-GAKLSASDIAAQLP--TKNKD 65
D + A L V P + A +L +F+II KA P GA S S+IA++LP T++ D
Sbjct: 21 EDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASKLPASTQHSD 80
Query: 66 APTMLDRILRLLASYSVVECS---LDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQ 122
P LDR LRLLASYSV+ + ++ GA R Y L+ V KY VP++ L +
Sbjct: 81 LPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRGYLASFTTFLC 140
Query: 123 DKVFLESWSHLKDAILEGGIP-FNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNI 181
L+ W + K+A+++ I F HG+ +E+ D + N+ FN + + +
Sbjct: 141 YPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRX 200
Query: 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGD 241
LE Y GF I LVDVGG G L+ I SKYP IKGINFD P VIE+AP IEHV GD
Sbjct: 201 LEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGD 260
Query: 242 MFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301
F SVP+GDA LK + H+W DE C++ L NC+K++ +GKVI+VE +LPE PNTS ESK
Sbjct: 261 XFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320
Query: 302 SNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGN-FWVMEFYK 353
S +D L GG+ERT+ ++ L+ +GFS + N V EFYK
Sbjct: 321 LVSTLDNLXFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 17/360 (4%)
Query: 1 MGSIVDGERDQSFAYANQLAMGTVLP----MAMQAVYELGIFQIIDKAGPGAKLSASDIA 56
M S ++G + A L + M+++ E+ I II G LS
Sbjct: 1 MASSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSI 60
Query: 57 AQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGP 116
Q+P+ + R++R LA E + Y+L S+ V D + L P
Sbjct: 61 LQVPSSKIGN---VRRLMRYLAHNGFFEII---TKEEESYALTVASELLVRGSD-LCLAP 113
Query: 117 ALQMIQDKVFLESWSHLKDAILEGGIP-FNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTS 175
++ + D S+ LK I E + F G +++ +P +N FN AM + +
Sbjct: 114 MVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSK 173
Query: 176 LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHI 235
LI + + F ++ +VDVGG G T + I +P +K I FD+P V+E+ ++
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 236 EHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPED---GKVIVVELMLPE 292
+V GDMF S+P DA+ LK+ILH+W D+ CL++LK C ++V D GKV ++++++ +
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293
Query: 293 VPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
+ + ++ +DV M N GKER + E+ L AGF + +TG ++E Y
Sbjct: 294 KKDENQVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 173/350 (49%), Gaps = 14/350 (4%)
Query: 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPT 68
+ Q+ Y N A V M+++ E+ I II G LS Q+P+ D
Sbjct: 15 KAQALLYKNMYAF--VDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN-- 70
Query: 69 MLDRILRLLASYSVVE--CSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVF 126
+ R++R LA E + + Y+L S+ V + + L P ++ + D
Sbjct: 71 -VQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTE-LCLAPMVECVLDPTL 128
Query: 127 LESWSHLKDAILEGGIP-FNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
S+ +LK + E + F G +E+ +P +N +N A+ + + +I + +
Sbjct: 129 STSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCN 188
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
F ++ +VDVGG G T + I +P + + FD+P V+E+ ++ +V GDMF S
Sbjct: 189 LVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFIS 248
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPED---GKVIVVELMLPEVPNTSIESKS 302
VPK DA+ LK +LHDW D+ C+K+LK C ++V D GKVIV+++++ E + + ++
Sbjct: 249 VPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQI 308
Query: 303 NSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
++V + N GKER + E+ L AGF + TG ++E Y
Sbjct: 309 KLLMNVTISCVN--GKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 155/329 (47%), Gaps = 13/329 (3%)
Query: 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87
+++ E I II G LS Q+P+ L R L + ++
Sbjct: 32 SLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLXRYLAHNGFFEII---- 87
Query: 88 DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIP-FNR 146
+ Y+L S+ V D + L P ++ + D S+ LK I E + F
Sbjct: 88 --TKEEESYALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGV 144
Query: 147 AHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQ 206
G +++ +P +N FN A + + LI + + F ++ +VDVGG G T +
Sbjct: 145 TLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAK 204
Query: 207 AITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHC 266
I +P +K I FD+P V+E+ ++ +V GD F S+P DA+ LK+ILH+W D+ C
Sbjct: 205 IICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDC 264
Query: 267 LKLLKNCYKSVPED---GKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323
L++LK C ++V D GKV +++ ++ + + + ++ DV N GKER +
Sbjct: 265 LRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACLN--GKERNEE 322
Query: 324 EFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
E+ L AGF + +TG ++E Y
Sbjct: 323 EWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 170/344 (49%), Gaps = 23/344 (6%)
Query: 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL---PTKNKDAPTMLDRILRLLA-- 78
V MA+++ ELGI I G ++ S++A+ L P+K +L R LRLL
Sbjct: 21 VSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKLHPSK----VNILHRFLRLLTHN 74
Query: 79 ---SYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKD 135
+ ++V+ YSL SK + K L ++ L+ WS K
Sbjct: 75 GFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKK 133
Query: 136 AILEGG--IPFNRAHGMHAFEYGRVDPRFN--KHFNTAMYNHTSLIMSNILESYKGFANI 191
E F A G +++ D + F AM + + + + E+ + F +
Sbjct: 134 WFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGL 193
Query: 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDA 251
+ LVDVGG G + I +P++K FDQP V+ + + ++ V GDMF+S+P DA
Sbjct: 194 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADA 253
Query: 252 IFLKWILHDWDDEHCLKLLKNCYKSVP---EDGKVIVVELMLPEVPNTSIESKSNSHIDV 308
+ LKW+LHDW+DE LK+LKN +++ +DGKVI++++ + E + ++ D+
Sbjct: 254 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 313
Query: 309 LMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
+M+T GKERTK E+ L AGFS + ++G ++E Y
Sbjct: 314 VMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 356
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 170/344 (49%), Gaps = 23/344 (6%)
Query: 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL---PTKNKDAPTMLDRILRLLA-- 78
V MA+++ ELGI I G ++ S++A+ L P+K +L R LRLL
Sbjct: 18 VSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKLHPSK----VNILHRFLRLLTHN 71
Query: 79 ---SYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKD 135
+ ++V+ YSL SK + K L ++ L+ WS K
Sbjct: 72 GFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKK 130
Query: 136 AILEGG--IPFNRAHGMHAFEYGRVDPRFN--KHFNTAMYNHTSLIMSNILESYKGFANI 191
E F A G +++ D + F AM + + + + E+ + F +
Sbjct: 131 WFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGL 190
Query: 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDA 251
+ LVDVGG G + I +P++K FDQP V+ + + ++ V GDMF+S+P DA
Sbjct: 191 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADA 250
Query: 252 IFLKWILHDWDDEHCLKLLKNCYKSVP---EDGKVIVVELMLPEVPNTSIESKSNSHIDV 308
+ LKW+LHDW+DE LK+LKN +++ +DGKVI++++ + E + ++ D+
Sbjct: 251 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 310
Query: 309 LMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
+M+T GKERTK E+ L AGFS + ++G ++E Y
Sbjct: 311 VMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 353
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 170/344 (49%), Gaps = 23/344 (6%)
Query: 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL---PTKNKDAPTMLDRILRLLA-- 78
V MA+++ ELGI I G ++ S++A+ L P+K +L R LRLL
Sbjct: 22 VSSMALKSAMELGIADAIH--NHGKPMTLSELASSLKLHPSK----VNILHRFLRLLTHN 75
Query: 79 ---SYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKD 135
+ ++V+ YSL SK + K L ++ L+ WS K
Sbjct: 76 GFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKK 134
Query: 136 AILEGG--IPFNRAHGMHAFEYGRVDPRFN--KHFNTAMYNHTSLIMSNILESYKGFANI 191
E F A G +++ D + F AM + + + + E+ + F +
Sbjct: 135 WFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGL 194
Query: 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDA 251
+ LVDVGG G + I +P++K FDQP V+ + + ++ V GDMF+S+P DA
Sbjct: 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADA 254
Query: 252 IFLKWILHDWDDEHCLKLLKNCYKSVP---EDGKVIVVELMLPEVPNTSIESKSNSHIDV 308
+ LKW+LHDW+DE LK+LKN +++ +DGKVI++++ + E + ++ D+
Sbjct: 255 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 314
Query: 309 LMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
+M+T GKERTK E+ L AGFS + ++G ++E Y
Sbjct: 315 VMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 28/258 (10%)
Query: 96 YSLNSVSKYYVPNKDGVSLGPALQMIQDKVF------LESWSHLKDAILEGGIPFNRAHG 149
++ N++S +P+ PA + D F +W L ++ G F+ A+G
Sbjct: 110 FAQNALSAVLLPD-------PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANG 162
Query: 150 MHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAIT 209
++ DP+ + FN A SL + + + F+ VD+GG G A+
Sbjct: 163 TSFWQLTHEDPKARELFNRAX-GSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLXAAVL 221
Query: 210 SKYPYIKGINFDQPHVIEHAP-------LHPHIEHVAGDMFQSVPKG-DAIFLKWILHDW 261
+P ++G ++P V E A L E + GD F+++P G D +K +LHDW
Sbjct: 222 DAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDW 281
Query: 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERT 321
DD+ +++L+ + D +++V++ ++ E P S ++ GG ER+
Sbjct: 282 DDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFVDL------LLLVLVGGAERS 335
Query: 322 KHEFMTLATGAGFSGIRS 339
+ EF L +G RS
Sbjct: 336 ESEFAALLEKSGLRVERS 353
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 147/339 (43%), Gaps = 32/339 (9%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
DQ++ N A G ++ + A ELG+F ++ +A PG L + +AA + +
Sbjct: 6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-PGP-LDVAAVAAGVRASAHGTELL 63
Query: 70 LDRI--LRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL 127
LD L+LL ++ G + Y +S Y+ S L+ + +
Sbjct: 64 LDICVSLKLL--------KVETRGGKAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSY 114
Query: 128 ESWSHLKDAILEGGIPFNRAHGMHAFE-----YGRVDPRFNKHFNTAMYNHTSLIMSNIL 182
W HL DA+ EG + G+ A E Y R F A+ S+ ++L
Sbjct: 115 RCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERL--QFMQALQEVWSVNGRSVL 172
Query: 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH------PHIE 236
++ + + D+GG G + S YP K FD P V+ A H I+
Sbjct: 173 TAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQID 231
Query: 237 HVAGDMFQS-VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPN 295
GD F+ +P+ D L +LHDW D C LL+ Y + G ++V+E +L E
Sbjct: 232 FQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRR 291
Query: 296 TSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334
+ ++ S +++L+ T+ G+ERT + L + AGF
Sbjct: 292 GPLLTQLYS-LNMLVQTE---GQERTPTHYHMLLSSAGF 326
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-PHI---- 235
IL F + DVGG G L + ++P ++G+ D+ V+ L P +
Sbjct: 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRW 234
Query: 236 EHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPN 295
+ V GD + VP D LK ILH+W DE +++L NC + P G+V+V++ ++PE N
Sbjct: 235 KVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE-GN 293
Query: 296 TSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGN 345
+ +SK + T G+ERT E L T A G+R D V G
Sbjct: 294 DAHQSKEXDFXXLAART----GQERTAAELEPLFTAA---GLRLDRVVGT 336
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 64/359 (17%)
Query: 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83
V PMA++ L +++D L+ +D A L + P L R++R L V+
Sbjct: 28 VTPMALRVAATL---RLVDHL-----LAGADTLAGLADRTDTHPQALSRLVRHLTVVGVL 79
Query: 84 ECSLDGSGARRRYSLNSVSKYYVPNKDGVSLG---PALQMIQDKVFLESWSHLKDAILEG 140
E G ++ L P + G+ L PA Q +W L A+
Sbjct: 80 E-----GGEKQGRPLR-------PTRLGMLLADGHPAQQ--------RAWLDLNGAVSHA 119
Query: 141 GIPFN-------RAHGMHAFEYGR-------VDPRFNKHFNTAMYNHTSLIMSNILESYK 186
+ F +A YGR D F+ M L ++Y
Sbjct: 120 DLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD 179
Query: 187 GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP-------LHPHIEHVA 239
++ ++ ++DVGG G L AI + P+++G + E A L +
Sbjct: 180 -WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAE 238
Query: 240 GDMFQSVP-KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSI 298
GD F+ +P D + L ++L +W DE L +L+ C +++ G+++V++ +V
Sbjct: 239 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DVEGDGA 296
Query: 299 ESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTG------NFWVMEF 351
+ ++ +D+ M+T GG+ RT+ E + LA AG + + S+ +G +F ++EF
Sbjct: 297 DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLA-LASERTSGSTTLPFDFSILEF 353
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 121/277 (43%), Gaps = 34/277 (12%)
Query: 72 RILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWS 131
R++RLL ++ + + G R N+ + + + + +G + + + F +W+
Sbjct: 60 RLMRLLVAFEIFQ------GDTRDGYANTPTSHLLRDVEGSF--RDMVLFYGEEFHAAWT 111
Query: 132 HLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNI--LESYKGFA 189
+A+L G F A G + Y + P + F AM ++L I L ++G
Sbjct: 112 PACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDFRG-- 168
Query: 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDM 242
+ VDVGG G +AI P +G+ D+ + A + + V GDM
Sbjct: 169 --RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM 226
Query: 243 FQSVPK-GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301
Q VP GD L I+ D D+ L+LL NC +++ DG+V+V+E +I +
Sbjct: 227 LQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE--------RTISAS 278
Query: 302 SNSHIDVLM---MTQNPGGKERTKHEFMTLATGAGFS 335
S + VL + G+ RT E + L GF+
Sbjct: 279 EPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA 315
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 137/333 (41%), Gaps = 56/333 (16%)
Query: 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNK 109
L+ +D A L + P L R++R L V+E G ++ L P +
Sbjct: 46 LAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLE-----GGEKQGRPLR-------PTR 93
Query: 110 DGVSLG---PALQMIQDKVFLESWSHLKDAILEGGIPFN-------RAHGMHAFEYGR-- 157
G L PA Q +W L A+ + F +A YGR
Sbjct: 94 LGXLLADGHPAQQ--------RAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPF 145
Query: 158 -----VDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY 212
D F+ L ++Y ++ ++ ++DVGG G L AI +
Sbjct: 146 WEDLSADVALADSFDALXSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGXLAAIALRA 204
Query: 213 PYIKGINFDQPHVIEHAP-------LHPHIEHVAGDMFQSVP-KGDAIFLKWILHDWDDE 264
P+++G + E A L + GD F+ +P D + L ++L +W DE
Sbjct: 205 PHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDE 264
Query: 265 HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324
L +L+ C +++ G+++V++ +V + ++ +D+ +T GG+ RT+ E
Sbjct: 265 DALTILRGCVRALEPGGRLLVLDRA--DVEGDGADRFFSTLLDLRXLTFX-GGRVRTRDE 321
Query: 325 FMTLATGAGFSGIRSDLVTG------NFWVMEF 351
+ LA AG + + S+ +G +F ++EF
Sbjct: 322 VVDLAGSAGLA-LASERTSGSTTLPFDFSILEF 353
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 99/214 (46%), Gaps = 13/214 (6%)
Query: 129 SWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGF 188
S++ L DAI G + +G +E P F++ + + +Y +
Sbjct: 123 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 181
Query: 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP-------LHPHIEHVAGD 241
N++ ++DVGG G AI + P++ + ++ A L ++ V GD
Sbjct: 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 241
Query: 242 MFQSVP-KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES 300
F+ +P K DAI L ++L +W D +++L C +++ G++++ E ++ S +
Sbjct: 242 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE--RDDLHENSF-N 298
Query: 301 KSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334
+ + +D+ M+ GG RT+ ++ LA AG
Sbjct: 299 EQFTELDLRMLVFL-GGALRTREKWDGLAASAGL 331
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 159 DPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKG- 217
DP + F+T M +H L + I Y +A + +VDVGG G L A+ + + + G
Sbjct: 139 DPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGT 197
Query: 218 -INFDQPHVIEH-----APLHPHIEHVAGDMFQSVPKGDAIF-LKWILHDWDDEHCLKLL 270
++ P H L + V G F +P G + L +LHDWDD + +L
Sbjct: 198 VLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAIL 257
Query: 271 KNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330
+ C ++ G V+V+E + + + + + +D+ M+T GGKER+ E LA
Sbjct: 258 RRCAEAAGSGGVVLVIEAV-------AGDEHAGTGMDLRMLTYF-GGKERSLAELGELAA 309
Query: 331 GAGFS 335
AG +
Sbjct: 310 QAGLA 314
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 133/325 (40%), Gaps = 47/325 (14%)
Query: 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87
A++A EL +F I + S+ +A + T +R R L Y V+
Sbjct: 22 AIKAAVELNVFTAISQGIE----SSQSLAQKCQTS--------ERGXRXLCDYLVI---- 65
Query: 88 DGSGARRR--YSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFN 145
G ++ Y L S S ++ + +G A++ + ++ L A+L+GG +
Sbjct: 66 IGFXTKQAEGYRLTSDSAXFLDRQSKFYVGDAIEFLLSPXITNGFNDLTAAVLKGGTAIS 125
Query: 146 RAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMS----NILESYKGFANIKQLVDVGGNL 201
+ G + E+ V +F K + N LI N +E K ++D+ +
Sbjct: 126 -SEGTLSPEH-PVWVQFAKAXSPXXANPAQLIAQLVNENKIEPLK-------VLDISASH 176
Query: 202 GVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVA-------GDMFQSVPKG---DA 251
G+ A+ P + D V+E A + I+ VA G F+ V G D
Sbjct: 177 GLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE-VDYGNDYDL 235
Query: 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNSHIDVLM 310
+ L LH +D C +LL+ ++ +GKVIV + +PN+ I + ++
Sbjct: 236 VLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF----IPNSDRITPPDAAAFSLVX 291
Query: 311 MTQNPGGKERTKHEFMTLATGAGFS 335
+ P G T E+ + + AGFS
Sbjct: 292 LATTPNGDAYTFAEYESXFSNAGFS 316
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 123/298 (41%), Gaps = 44/298 (14%)
Query: 16 ANQLAM-GTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRIL 74
AN+L G + M+A EL +F + + GP D+A L P L+ +L
Sbjct: 34 ANELVFKGLIEFSCMKAAIELDLFSHMAE-GP------KDLAT-LAADTGSVPPRLEMLL 85
Query: 75 RLLASYSVVECSLDGSGARRRYSLNSVSKYYV------PNKDGVSLGPALQMIQDKVFLE 128
L V+ DG ++SL + Y PN + A+ + D ++
Sbjct: 86 ETLRQMRVINLE-DG-----KWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMG 139
Query: 129 SWSHLK-DAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKG 187
++ +G +P Y V N +F ++ + +LE K
Sbjct: 140 LSQAVRGQKNFKGQVP-----------YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK- 187
Query: 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIE-------HAPLHPHIEHVAG 240
+K+++DVGG +G A+ +P + + P I+ + + +A
Sbjct: 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAV 247
Query: 241 DMF-QSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML--PEVPN 295
D++ +S P+ DA+ IL+ +++ + K + ++ G+++++++++ PE PN
Sbjct: 248 DIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 305
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 60/305 (19%), Positives = 114/305 (37%), Gaps = 65/305 (21%)
Query: 16 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILR 75
A ++A G V+ + + + GIFQ++ G L +I+ + A +L+
Sbjct: 19 AQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQ--EISGRTGLTRYAAQVLLE---- 72
Query: 76 LLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKD 135
AS ++ L+ RY L + + +K + V + HL++
Sbjct: 73 --ASLTIGTILLE----EDRYVLAKAGWFLLNDK----MARVNMEFNHDVNYQGLFHLEE 122
Query: 136 AILEGGIPFNRAHGMHAF-EYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANI--- 191
A+L G R G+ F E+ +Y S + + +S+ GF +
Sbjct: 123 ALLNG-----RPEGLKVFGEW------------PTIYEGLSQLPEQVQKSWFGFDHFYSD 165
Query: 192 ---------------KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIE--------- 227
K+L+D+GGN G ++ D P +E
Sbjct: 166 QSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGL 225
Query: 228 --HAPLHPHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284
+H H ++ D P G DA+++ L + +E + +L +S+ +D KV
Sbjct: 226 SGSERIHGHGANLL-DRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVY 284
Query: 285 VVELM 289
++E +
Sbjct: 285 IMETL 289
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE-VPNTSIESKSNSHIDV 308
D I+++W++ D+H + L+ C S+ +G +++ + M E V ++S +DV
Sbjct: 148 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDV 207
Query: 309 L 309
+
Sbjct: 208 V 208
>pdb|3II1|A Chain A, Structural Characterization Of Difunctional Glucanase-
Xylanse Celm2
Length = 535
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 38 FQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRL-LASYSVVECSLDGSGARRRY 96
+Q AG G S ++ P DA T++D + A + V + G R Y
Sbjct: 145 WQWFPDAGNGVLTSGQNVTGNNP---NDANTLVDSTFQQGWAQHLVSQWGTAAGGGLRYY 201
Query: 97 SL-NSVSKYYVPNKDGVSLGPALQMIQDKVF 126
L N S ++ ++D +GP + I+DK+
Sbjct: 202 ILDNEPSIWFSTHRDVHPVGPTMDEIRDKML 232
>pdb|3FW6|A Chain A, Crystal Structure Of Celm2, A Bifunctional Glucanase-
Xylanase Protein From A Metagenome Library
Length = 534
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 38 FQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRL-LASYSVVECSLDGSGARRRY 96
+Q AG G S ++ P DA T++D + A + V + G R Y
Sbjct: 145 WQWFPDAGNGVLTSGQNVTGNNP---NDANTLVDSTFQQGWAQHLVSQWGTAAGGGLRYY 201
Query: 97 SL-NSVSKYYVPNKDGVSLGPALQMIQDKVF 126
L N S ++ ++D +GP + I+DK+
Sbjct: 202 ILDNEPSIWFSTHRDVHPVGPTMDEIRDKML 232
>pdb|2QH5|A Chain A, Crystal Structure Of Mannose-6-Phosphate Isomerase From
Helicobacter Pylori
pdb|2QH5|B Chain B, Crystal Structure Of Mannose-6-Phosphate Isomerase From
Helicobacter Pylori
Length = 308
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 11/132 (8%)
Query: 191 IKQLVDVGG-----NLGVTLQAITSKYPYIKGIN-FDQPHVIEHAPLHPHIE--HVAGDM 242
IK+ +D+ GV++ +++ YI+ N D IE L IE G
Sbjct: 126 IKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESPNGLDVKRFIEKPSLDKAIEFQKSGGFY 185
Query: 243 FQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS 302
F S G +F + D +H +LK C ++ E + + S++
Sbjct: 186 FNS---GMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLE 242
Query: 303 NSHIDVLMMTQN 314
+ ID+ +M Q+
Sbjct: 243 DMSIDIALMQQS 254
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVE 84
L ++A+ LG+ + DK D+ +++ + +L ++RL + E
Sbjct: 60 LAAIVRAMDTLGV-EYGDKERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQE 118
Query: 85 CSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQD 123
C R Y LN +KYY+ + D + G QD
Sbjct: 119 CF----NRSREYQLNDSAKYYLDSLDRIGAGDYQPTEQD 153
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
Length = 565
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 71 DRILRLLASYSVVECSLDGSGARR-------RYSLNSVSKYYVPNKDGVS 113
D+++ LLA+ +V LDG R RYSL + +Y P DG+S
Sbjct: 280 DQMISLLANSQLVRDELDGKHDYRDHELIQDRYSLRCLPQYLGPIVDGIS 329
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 267 LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319
LKL ++ +K +DG ++ L P +P + ++ +H D+ +T G +E
Sbjct: 153 LKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE 205
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIE 299
EH + + CY P++ +++V +L E+P+ S++
Sbjct: 138 EHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD 173
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|B Chain B, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|C Chain C, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|D Chain D, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
Length = 539
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 71 DRILRLLASYSVVECSLDGSGARR-------RYSLNSVSKYYVPNKDGVS 113
D+ + LLA+ +V LDG R RYSL + +Y P DG+S
Sbjct: 256 DQXISLLANSQLVRDELDGKHDYRDHELIQDRYSLRCLPQYLGPIVDGIS 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,194,233
Number of Sequences: 62578
Number of extensions: 479580
Number of successful extensions: 961
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 31
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)