Query 018576
Match_columns 353
No_of_seqs 165 out of 2254
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 1.1E-44 2.3E-49 319.8 28.2 338 8-353 2-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 1.3E-39 2.9E-44 296.8 24.5 289 25-340 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 6.5E-40 1.4E-44 289.1 17.8 236 93-330 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 2.9E-19 6.4E-24 153.6 14.7 154 188-346 49-229 (238)
5 PLN02233 ubiquinone biosynthes 99.8 4.3E-18 9.2E-23 151.3 17.2 155 188-347 71-254 (261)
6 PF01209 Ubie_methyltran: ubiE 99.8 5.8E-20 1.3E-24 159.7 4.2 155 188-346 45-225 (233)
7 PTZ00098 phosphoethanolamine N 99.8 1.7E-17 3.6E-22 147.7 15.9 156 178-343 41-204 (263)
8 TIGR00740 methyltransferase, p 99.8 1.5E-18 3.2E-23 152.9 8.8 149 189-342 52-228 (239)
9 KOG1540 Ubiquinone biosynthesi 99.7 4.7E-17 1E-21 137.3 14.7 147 188-338 98-278 (296)
10 TIGR02752 MenG_heptapren 2-hep 99.7 2.9E-17 6.2E-22 144.0 14.0 169 180-353 36-231 (231)
11 PRK14103 trans-aconitate 2-met 99.7 6.2E-17 1.3E-21 143.9 15.6 155 179-337 19-180 (255)
12 PRK15451 tRNA cmo(5)U34 methyl 99.7 9.6E-18 2.1E-22 148.1 9.9 151 189-340 55-229 (247)
13 PLN02244 tocopherol O-methyltr 99.7 1.1E-16 2.3E-21 147.7 16.0 151 189-343 117-280 (340)
14 PLN02490 MPBQ/MSBQ methyltrans 99.7 5.1E-16 1.1E-20 141.3 16.5 140 189-343 112-258 (340)
15 COG4106 Tam Trans-aconitate me 99.7 3.4E-16 7.3E-21 129.0 10.4 183 166-353 8-203 (257)
16 PRK00216 ubiE ubiquinone/menaq 99.7 4.6E-15 1E-19 130.5 17.6 168 180-353 42-238 (239)
17 PLN02336 phosphoethanolamine N 99.7 2.6E-15 5.6E-20 145.3 16.0 152 178-342 255-415 (475)
18 COG2230 Cfa Cyclopropane fatty 99.6 2.2E-15 4.9E-20 131.9 13.1 157 178-343 61-225 (283)
19 PRK11207 tellurite resistance 99.6 4.2E-15 9.1E-20 126.7 14.5 140 179-339 20-168 (197)
20 smart00828 PKS_MT Methyltransf 99.6 2.6E-15 5.6E-20 130.9 12.8 137 192-344 1-147 (224)
21 PRK15068 tRNA mo(5)U34 methylt 99.6 7.4E-15 1.6E-19 134.2 16.1 153 180-342 113-275 (322)
22 TIGR00452 methyltransferase, p 99.6 8.5E-15 1.8E-19 132.3 16.2 153 180-342 112-274 (314)
23 PF12847 Methyltransf_18: Meth 99.6 6.2E-16 1.4E-20 119.6 7.7 97 191-287 2-111 (112)
24 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 1.3E-14 2.7E-19 126.4 16.6 165 180-353 30-223 (223)
25 PF02353 CMAS: Mycolic acid cy 99.6 3.8E-15 8.2E-20 132.5 12.8 160 178-343 51-219 (273)
26 PLN02396 hexaprenyldihydroxybe 99.6 1.4E-15 3.1E-20 138.0 9.3 143 190-342 131-290 (322)
27 PRK11873 arsM arsenite S-adeno 99.6 8.6E-15 1.9E-19 131.4 14.2 145 188-341 75-230 (272)
28 PRK01683 trans-aconitate 2-met 99.6 1.8E-14 3.9E-19 128.4 16.1 106 178-286 20-129 (258)
29 PRK08317 hypothetical protein; 99.6 1.6E-14 3.4E-19 127.1 15.2 157 180-342 10-177 (241)
30 PRK06922 hypothetical protein; 99.6 5.1E-15 1.1E-19 142.7 12.8 141 151-292 378-542 (677)
31 PF13489 Methyltransf_23: Meth 99.6 4.6E-15 9.9E-20 122.3 10.7 137 188-338 20-160 (161)
32 PRK11036 putative S-adenosyl-L 99.6 1.2E-14 2.5E-19 129.2 12.3 157 180-343 36-209 (255)
33 smart00138 MeTrc Methyltransfe 99.6 6.1E-14 1.3E-18 124.7 15.4 109 179-288 89-243 (264)
34 TIGR00477 tehB tellurite resis 99.6 6.7E-14 1.4E-18 119.1 13.9 141 179-340 20-168 (195)
35 PF08241 Methyltransf_11: Meth 99.6 7.2E-15 1.6E-19 109.8 6.5 88 195-285 1-95 (95)
36 KOG4300 Predicted methyltransf 99.6 4.8E-14 1E-18 115.5 11.3 177 163-347 50-238 (252)
37 PRK06202 hypothetical protein; 99.5 1.6E-13 3.5E-18 120.3 15.4 144 188-342 58-223 (232)
38 PRK05785 hypothetical protein; 99.5 2.2E-13 4.8E-18 118.4 15.0 152 190-352 51-223 (226)
39 PRK10258 biotin biosynthesis p 99.5 3E-13 6.5E-18 120.0 15.5 145 178-336 31-182 (251)
40 PF08242 Methyltransf_12: Meth 99.5 5E-15 1.1E-19 111.9 3.2 87 195-283 1-99 (99)
41 TIGR02072 BioC biotin biosynth 99.5 4.1E-13 8.8E-18 118.1 15.8 136 190-340 34-175 (240)
42 PF13847 Methyltransf_31: Meth 99.5 4.1E-14 8.9E-19 115.7 8.2 139 189-333 2-152 (152)
43 PF06080 DUF938: Protein of un 99.5 8E-13 1.7E-17 110.4 15.4 158 193-353 28-204 (204)
44 PRK04266 fibrillarin; Provisio 99.5 1E-12 2.2E-17 113.8 16.5 136 184-345 67-214 (226)
45 PRK11705 cyclopropane fatty ac 99.5 4.3E-13 9.3E-18 125.3 15.1 154 179-344 157-315 (383)
46 PLN02336 phosphoethanolamine N 99.5 2.6E-13 5.6E-18 131.4 13.9 144 178-338 26-179 (475)
47 PRK08287 cobalt-precorrin-6Y C 99.5 4.5E-13 9.8E-18 113.4 13.6 124 183-341 25-156 (187)
48 TIGR02021 BchM-ChlM magnesium 99.5 6E-13 1.3E-17 115.6 14.7 146 189-344 54-209 (219)
49 TIGR03587 Pse_Me-ase pseudamin 99.5 2.8E-13 6E-18 115.8 12.1 103 188-292 41-147 (204)
50 PRK12335 tellurite resistance 99.5 5.6E-13 1.2E-17 120.4 13.9 132 189-340 119-258 (287)
51 TIGR00537 hemK_rel_arch HemK-r 99.5 1.4E-12 2.9E-17 109.7 14.8 134 189-353 18-177 (179)
52 PF13649 Methyltransf_25: Meth 99.5 4.2E-14 9.1E-19 107.2 4.2 88 194-281 1-101 (101)
53 TIGR03438 probable methyltrans 99.4 2.4E-12 5.3E-17 116.9 13.9 96 190-285 63-175 (301)
54 KOG2361 Predicted methyltransf 99.4 9E-13 1.9E-17 110.9 9.6 145 192-339 73-235 (264)
55 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.3E-13 5E-18 115.2 4.3 143 190-342 59-216 (243)
56 PRK07580 Mg-protoporphyrin IX 99.4 5.3E-12 1.1E-16 110.5 13.1 146 189-344 62-217 (230)
57 PLN03075 nicotianamine synthas 99.4 2.4E-12 5.2E-17 114.3 10.5 98 189-287 122-233 (296)
58 PRK15001 SAM-dependent 23S rib 99.4 1.1E-11 2.5E-16 114.6 15.3 107 180-287 219-340 (378)
59 TIGR00138 gidB 16S rRNA methyl 99.4 9.8E-12 2.1E-16 104.2 12.6 91 191-287 43-142 (181)
60 PRK09489 rsmC 16S ribosomal RN 99.4 2.5E-11 5.5E-16 111.6 16.1 108 180-288 187-304 (342)
61 PF08003 Methyltransf_9: Prote 99.4 2.2E-11 4.8E-16 107.0 14.7 154 179-342 105-268 (315)
62 PF05401 NodS: Nodulation prot 99.4 1.9E-12 4.1E-17 106.8 7.3 135 184-342 38-180 (201)
63 KOG1270 Methyltransferases [Co 99.3 9E-13 1.9E-17 112.4 5.3 141 191-341 90-249 (282)
64 PRK05134 bifunctional 3-demeth 99.3 8.4E-12 1.8E-16 109.5 11.7 145 189-341 47-205 (233)
65 TIGR03840 TMPT_Se_Te thiopurin 99.3 6E-11 1.3E-15 101.9 15.7 131 189-340 33-186 (213)
66 PF03848 TehB: Tellurite resis 99.3 5.8E-12 1.3E-16 105.2 8.9 140 179-339 20-167 (192)
67 PLN02585 magnesium protoporphy 99.3 1.1E-11 2.3E-16 112.4 11.1 139 190-343 144-301 (315)
68 PRK00107 gidB 16S rRNA methylt 99.3 1.9E-11 4.1E-16 102.7 11.2 92 190-287 45-145 (187)
69 TIGR02469 CbiT precorrin-6Y C5 99.3 4.6E-11 1E-15 93.8 11.4 101 181-287 11-122 (124)
70 PTZ00146 fibrillarin; Provisio 99.3 3.4E-10 7.3E-15 100.3 17.3 132 188-343 130-273 (293)
71 PF05175 MTS: Methyltransferas 99.3 1.4E-11 2.9E-16 102.6 8.1 99 190-288 31-141 (170)
72 TIGR03534 RF_mod_PrmC protein- 99.3 6.9E-11 1.5E-15 104.8 13.1 123 190-342 87-242 (251)
73 PRK13255 thiopurine S-methyltr 99.3 1.7E-10 3.8E-15 99.5 15.1 133 188-341 35-190 (218)
74 PRK00121 trmB tRNA (guanine-N( 99.3 1.6E-11 3.5E-16 105.0 8.5 98 190-287 40-156 (202)
75 TIGR01983 UbiG ubiquinone bios 99.3 2.2E-11 4.7E-16 106.1 9.4 142 190-341 45-203 (224)
76 PRK11188 rrmJ 23S rRNA methylt 99.2 1.6E-10 3.4E-15 99.3 13.5 106 179-288 40-166 (209)
77 PF05891 Methyltransf_PK: AdoM 99.2 3.4E-11 7.3E-16 101.2 7.9 137 190-341 55-201 (218)
78 PLN02232 ubiquinone biosynthes 99.2 2.5E-11 5.5E-16 99.8 6.5 126 218-345 1-151 (160)
79 PRK09328 N5-glutamine S-adenos 99.2 4.8E-10 1E-14 100.8 15.4 135 188-352 106-274 (275)
80 TIGR00091 tRNA (guanine-N(7)-) 99.2 4.1E-11 8.9E-16 101.9 7.8 98 190-288 16-133 (194)
81 PRK11088 rrmA 23S rRNA methylt 99.2 7.5E-11 1.6E-15 105.8 9.6 90 190-288 85-182 (272)
82 TIGR02081 metW methionine bios 99.2 2.4E-10 5.2E-15 97.3 12.1 145 190-342 13-168 (194)
83 COG2813 RsmC 16S RNA G1207 met 99.2 1E-09 2.2E-14 96.7 15.5 109 179-288 148-267 (300)
84 PF05148 Methyltransf_8: Hypot 99.2 6.2E-10 1.3E-14 92.6 13.1 159 154-353 32-197 (219)
85 PRK14968 putative methyltransf 99.2 1.1E-09 2.3E-14 92.7 15.0 123 189-342 22-174 (188)
86 COG2242 CobL Precorrin-6B meth 99.2 7.6E-10 1.6E-14 90.7 12.9 101 182-289 27-137 (187)
87 PRK13944 protein-L-isoaspartat 99.2 2.5E-10 5.4E-15 97.9 10.5 99 180-287 63-173 (205)
88 PRK00517 prmA ribosomal protei 99.1 1.1E-09 2.4E-14 96.9 13.9 123 189-351 118-248 (250)
89 TIGR03533 L3_gln_methyl protei 99.1 1.5E-09 3.4E-14 97.6 14.5 96 190-285 121-249 (284)
90 PF12147 Methyltransf_20: Puta 99.1 4.5E-09 9.8E-14 91.6 16.2 154 189-352 134-310 (311)
91 PRK13942 protein-L-isoaspartat 99.1 6E-10 1.3E-14 96.0 10.7 101 178-287 65-176 (212)
92 PF07021 MetW: Methionine bios 99.1 1.4E-09 3.1E-14 89.7 12.2 143 189-344 12-170 (193)
93 PHA03411 putative methyltransf 99.1 1.1E-09 2.3E-14 96.1 12.1 123 191-336 65-209 (279)
94 PRK14121 tRNA (guanine-N(7)-)- 99.1 6.4E-10 1.4E-14 102.6 10.8 108 180-289 113-237 (390)
95 PRK00377 cbiT cobalt-precorrin 99.1 1.8E-09 3.8E-14 92.2 12.5 97 183-285 34-143 (198)
96 PRK07402 precorrin-6B methylas 99.1 1.1E-09 2.3E-14 93.4 11.1 101 181-288 32-143 (196)
97 TIGR00080 pimt protein-L-isoas 99.1 1E-09 2.3E-14 94.9 10.7 100 179-287 67-177 (215)
98 COG4123 Predicted O-methyltran 99.1 2.6E-09 5.7E-14 92.3 12.8 125 188-342 42-195 (248)
99 PRK14966 unknown domain/N5-glu 99.1 4.9E-09 1.1E-13 97.4 15.4 132 190-351 251-416 (423)
100 TIGR00536 hemK_fam HemK family 99.1 1.5E-09 3.3E-14 97.8 11.3 94 192-285 116-242 (284)
101 PRK14967 putative methyltransf 99.0 6.6E-09 1.4E-13 90.4 14.4 102 188-290 34-162 (223)
102 TIGR00438 rrmJ cell division p 99.0 4.5E-09 9.8E-14 89.0 12.4 104 180-287 22-146 (188)
103 PRK11805 N5-glutamine S-adenos 99.0 1.4E-09 3E-14 98.9 9.6 94 192-285 135-261 (307)
104 PRK01544 bifunctional N5-gluta 99.0 4.4E-09 9.5E-14 101.9 12.7 121 191-341 139-293 (506)
105 PRK04457 spermidine synthase; 99.0 1.4E-09 3E-14 96.7 8.5 98 189-287 65-177 (262)
106 TIGR00406 prmA ribosomal prote 99.0 7.6E-09 1.7E-13 93.4 12.9 93 190-288 159-260 (288)
107 KOG3045 Predicted RNA methylas 99.0 1.9E-08 4.1E-13 85.8 14.0 158 153-353 139-303 (325)
108 COG4976 Predicted methyltransf 99.0 2.2E-09 4.7E-14 89.9 8.0 144 179-342 115-266 (287)
109 PF13659 Methyltransf_26: Meth 99.0 7E-10 1.5E-14 86.2 4.9 97 191-288 1-116 (117)
110 cd02440 AdoMet_MTases S-adenos 99.0 4.8E-09 1E-13 78.7 9.4 92 193-286 1-103 (107)
111 PF01739 CheR: CheR methyltran 99.0 2E-09 4.3E-14 90.9 7.9 99 189-287 30-175 (196)
112 PRK10611 chemotaxis methyltran 98.9 1.2E-08 2.7E-13 91.0 12.4 98 190-287 115-262 (287)
113 TIGR01177 conserved hypothetic 98.9 1.5E-08 3.2E-13 93.4 13.4 99 188-288 180-295 (329)
114 PRK13256 thiopurine S-methyltr 98.9 3E-08 6.4E-13 85.4 13.0 101 188-290 41-166 (226)
115 PRK00811 spermidine synthase; 98.9 7.3E-09 1.6E-13 93.2 9.0 98 189-286 75-190 (283)
116 TIGR03704 PrmC_rel_meth putati 98.9 1.8E-08 3.9E-13 89.0 11.4 97 190-286 86-215 (251)
117 PRK00312 pcm protein-L-isoaspa 98.9 1.6E-08 3.4E-13 87.3 10.6 98 180-288 69-176 (212)
118 COG1352 CheR Methylase of chem 98.9 1.2E-07 2.7E-12 83.5 15.8 98 190-287 96-241 (268)
119 KOG2899 Predicted methyltransf 98.8 1.4E-08 3E-13 85.8 8.8 105 181-285 48-207 (288)
120 PF05724 TPMT: Thiopurine S-me 98.8 4.3E-08 9.3E-13 84.4 12.2 133 188-341 35-190 (218)
121 PF04672 Methyltransf_19: S-ad 98.8 8.3E-09 1.8E-13 89.9 7.4 141 190-338 68-233 (267)
122 COG2890 HemK Methylase of poly 98.8 1.5E-07 3.3E-12 84.3 15.0 121 193-343 113-265 (280)
123 KOG1271 Methyltransferases [Ge 98.8 2.6E-08 5.6E-13 80.5 8.9 122 192-343 69-207 (227)
124 COG2264 PrmA Ribosomal protein 98.8 1.1E-07 2.3E-12 84.6 13.4 123 189-347 161-294 (300)
125 PRK01581 speE spermidine synth 98.8 2.4E-08 5.3E-13 90.9 9.5 100 188-287 148-268 (374)
126 PF06325 PrmA: Ribosomal prote 98.8 3.2E-08 6.9E-13 88.7 9.8 125 189-352 160-294 (295)
127 KOG3010 Methyltransferase [Gen 98.8 2.4E-08 5.2E-13 84.5 8.1 93 190-287 33-137 (261)
128 PLN02366 spermidine synthase 98.8 3.7E-08 8.1E-13 89.1 9.4 99 188-286 89-205 (308)
129 PRK13943 protein-L-isoaspartat 98.8 3.6E-08 7.7E-13 89.8 9.1 99 180-287 71-180 (322)
130 PRK03612 spermidine synthase; 98.7 8.9E-08 1.9E-12 93.4 12.1 98 189-287 296-415 (521)
131 PF08100 Dimerisation: Dimeris 98.7 1.1E-08 2.4E-13 65.8 3.8 51 27-78 1-51 (51)
132 COG2518 Pcm Protein-L-isoaspar 98.7 8.7E-08 1.9E-12 80.5 10.2 100 178-288 61-170 (209)
133 TIGR00417 speE spermidine synt 98.7 4.5E-08 9.7E-13 87.6 8.4 98 189-286 71-185 (270)
134 smart00650 rADc Ribosomal RNA 98.7 7E-08 1.5E-12 80.2 8.3 104 179-288 3-114 (169)
135 PF01135 PCMT: Protein-L-isoas 98.7 1.8E-08 3.9E-13 86.1 4.8 102 178-288 61-173 (209)
136 COG2519 GCD14 tRNA(1-methylade 98.7 2.1E-07 4.6E-12 79.9 11.2 106 178-291 83-199 (256)
137 PLN02781 Probable caffeoyl-CoA 98.7 2.1E-07 4.6E-12 81.3 10.5 98 188-290 66-181 (234)
138 PHA03412 putative methyltransf 98.6 1.9E-07 4.1E-12 80.2 9.5 92 191-282 50-158 (241)
139 PF05219 DREV: DREV methyltran 98.6 4.8E-07 1E-11 78.1 11.8 143 190-343 94-242 (265)
140 PRK10901 16S rRNA methyltransf 98.6 2.9E-07 6.2E-12 87.9 10.9 106 184-290 239-375 (427)
141 PLN02672 methionine S-methyltr 98.6 6.3E-07 1.4E-11 92.7 13.5 122 191-342 119-304 (1082)
142 TIGR00563 rsmB ribosomal RNA s 98.6 2.8E-07 6.1E-12 88.0 9.9 109 182-291 231-372 (426)
143 PF02390 Methyltransf_4: Putat 98.6 1.2E-07 2.7E-12 80.3 6.4 95 193-288 20-134 (195)
144 PRK14902 16S rRNA methyltransf 98.6 3.2E-07 7E-12 88.1 10.1 103 188-290 248-382 (444)
145 PRK14904 16S rRNA methyltransf 98.6 4.6E-07 1E-11 86.9 11.0 104 188-291 248-381 (445)
146 PF03291 Pox_MCEL: mRNA cappin 98.5 2.7E-07 5.8E-12 84.4 8.4 98 190-288 62-187 (331)
147 PRK14901 16S rRNA methyltransf 98.5 4.9E-07 1.1E-11 86.5 9.9 103 188-290 250-387 (434)
148 KOG1541 Predicted protein carb 98.5 2.5E-07 5.5E-12 77.2 6.7 96 190-287 50-160 (270)
149 PF08123 DOT1: Histone methyla 98.5 4.4E-07 9.6E-12 77.2 7.6 111 179-293 32-164 (205)
150 PF11968 DUF3321: Putative met 98.5 2E-06 4.4E-11 72.4 11.2 120 191-343 52-183 (219)
151 PRK14903 16S rRNA methyltransf 98.4 8.9E-07 1.9E-11 84.4 9.5 104 188-291 235-370 (431)
152 TIGR00446 nop2p NOL1/NOP2/sun 98.4 1.5E-06 3.2E-11 77.5 10.1 104 188-291 69-203 (264)
153 KOG1975 mRNA cap methyltransfe 98.4 8.6E-07 1.9E-11 78.2 8.1 105 180-287 109-237 (389)
154 PRK11727 23S rRNA mA1618 methy 98.4 7.7E-07 1.7E-11 80.8 8.0 145 190-343 114-294 (321)
155 COG3963 Phospholipid N-methylt 98.4 1.6E-06 3.6E-11 69.3 8.6 112 177-289 36-158 (194)
156 PLN02476 O-methyltransferase 98.4 4.3E-06 9.3E-11 74.2 12.3 99 188-291 116-232 (278)
157 COG0220 Predicted S-adenosylme 98.4 1.7E-06 3.7E-11 74.6 8.8 96 192-288 50-165 (227)
158 PF08704 GCD14: tRNA methyltra 98.4 1.2E-06 2.7E-11 76.4 7.6 126 180-342 31-172 (247)
159 PF10294 Methyltransf_16: Puta 98.3 1.1E-06 2.4E-11 73.2 6.6 101 188-290 43-159 (173)
160 PRK00274 ksgA 16S ribosomal RN 98.3 2.9E-06 6.4E-11 76.0 8.1 80 179-262 32-118 (272)
161 PF09243 Rsm22: Mitochondrial 98.3 4.1E-06 8.9E-11 75.0 8.8 112 178-292 22-144 (274)
162 TIGR00755 ksgA dimethyladenosi 98.3 4E-06 8.6E-11 74.4 8.6 90 178-275 18-116 (253)
163 PF01596 Methyltransf_3: O-met 98.3 1.4E-06 2.9E-11 74.3 5.3 98 188-290 43-158 (205)
164 PRK14896 ksgA 16S ribosomal RN 98.2 5.9E-06 1.3E-10 73.5 9.2 82 178-263 18-105 (258)
165 PRK10909 rsmD 16S rRNA m(2)G96 98.2 5E-06 1.1E-10 70.6 7.9 94 190-287 53-159 (199)
166 PLN02823 spermine synthase 98.2 5.9E-06 1.3E-10 75.8 8.7 97 189-286 102-219 (336)
167 KOG1500 Protein arginine N-met 98.2 8.6E-06 1.9E-10 72.2 9.2 104 180-285 168-280 (517)
168 COG4122 Predicted O-methyltran 98.2 6.6E-06 1.4E-10 70.3 7.9 100 188-292 57-171 (219)
169 PRK00536 speE spermidine synth 98.2 8.7E-06 1.9E-10 71.7 8.8 90 188-287 70-171 (262)
170 TIGR00478 tly hemolysin TlyA f 98.2 6.2E-05 1.3E-09 65.2 13.7 147 176-343 61-219 (228)
171 COG0421 SpeE Spermidine syntha 98.2 9.2E-06 2E-10 72.5 8.7 98 188-286 74-189 (282)
172 TIGR03439 methyl_EasF probable 98.1 1.4E-05 3E-10 72.7 9.6 104 179-285 68-195 (319)
173 KOG1331 Predicted methyltransf 98.1 5.9E-06 1.3E-10 72.1 6.8 106 178-290 36-146 (293)
174 PF05185 PRMT5: PRMT5 arginine 98.1 6.8E-06 1.5E-10 78.3 7.3 125 153-284 153-294 (448)
175 PRK13168 rumA 23S rRNA m(5)U19 98.1 7.9E-06 1.7E-10 78.5 7.8 99 179-286 287-399 (443)
176 PF03141 Methyltransf_29: Puta 98.1 2.6E-06 5.7E-11 79.9 4.3 97 190-290 117-222 (506)
177 PRK11783 rlmL 23S rRNA m(2)G24 98.1 7.7E-06 1.7E-10 82.8 7.8 96 190-286 538-655 (702)
178 PRK15128 23S rRNA m(5)C1962 me 98.1 1.4E-05 3E-10 75.2 8.3 98 190-288 220-340 (396)
179 KOG2904 Predicted methyltransf 98.0 4.9E-05 1.1E-09 65.9 10.5 100 189-288 147-286 (328)
180 PTZ00338 dimethyladenosine tra 98.0 2.2E-05 4.7E-10 70.9 8.9 89 178-270 25-122 (294)
181 KOG2940 Predicted methyltransf 98.0 3.1E-05 6.6E-10 65.3 9.0 140 190-339 72-225 (325)
182 PRK04148 hypothetical protein; 98.0 4.5E-05 9.9E-10 59.8 9.4 101 180-291 7-113 (134)
183 PLN02589 caffeoyl-CoA O-methyl 98.0 1.4E-05 3.1E-10 70.0 7.2 97 188-289 77-192 (247)
184 PRK01544 bifunctional N5-gluta 98.0 1.4E-05 3.1E-10 77.7 7.1 98 190-288 347-463 (506)
185 PF01564 Spermine_synth: Sperm 98.0 8.8E-06 1.9E-10 71.6 4.4 100 188-287 74-191 (246)
186 PRK03522 rumB 23S rRNA methylu 97.9 2.2E-05 4.7E-10 72.0 6.9 66 190-257 173-249 (315)
187 KOG1661 Protein-L-isoaspartate 97.9 3.1E-05 6.7E-10 64.5 6.9 92 188-287 80-193 (237)
188 COG0293 FtsJ 23S rRNA methylas 97.9 0.00012 2.7E-09 61.5 10.2 116 170-289 25-161 (205)
189 KOG3191 Predicted N6-DNA-methy 97.9 0.00084 1.8E-08 54.8 14.3 134 191-353 44-208 (209)
190 KOG1499 Protein arginine N-met 97.9 2.1E-05 4.5E-10 70.8 5.7 94 190-284 60-164 (346)
191 TIGR00479 rumA 23S rRNA (uraci 97.8 8.1E-05 1.8E-09 71.4 9.5 97 181-285 284-394 (431)
192 COG2521 Predicted archaeal met 97.8 0.00031 6.7E-09 59.6 11.2 133 188-343 132-279 (287)
193 COG2263 Predicted RNA methylas 97.8 7.3E-05 1.6E-09 61.5 7.2 116 190-339 45-166 (198)
194 PF01728 FtsJ: FtsJ-like methy 97.8 3.2E-05 6.9E-10 64.9 4.8 109 176-288 7-140 (181)
195 COG5459 Predicted rRNA methyla 97.7 2.4E-05 5.3E-10 69.9 3.6 102 191-292 114-230 (484)
196 PF02527 GidB: rRNA small subu 97.7 2.8E-05 6E-10 65.1 3.8 89 193-287 51-148 (184)
197 TIGR00095 RNA methyltransferas 97.7 0.00011 2.4E-09 62.0 7.3 95 190-289 49-160 (189)
198 PRK00050 16S rRNA m(4)C1402 me 97.7 0.0001 2.2E-09 66.3 6.7 66 178-244 8-79 (296)
199 PRK11760 putative 23S rRNA C24 97.7 0.00074 1.6E-08 61.3 11.8 95 189-291 210-308 (357)
200 TIGR02085 meth_trns_rumB 23S r 97.6 0.00015 3.3E-09 68.0 7.8 90 190-286 233-333 (374)
201 COG0030 KsgA Dimethyladenosine 97.6 0.0004 8.8E-09 60.8 9.7 92 178-272 19-118 (259)
202 PF07942 N2227: N2227-like pro 97.6 0.0021 4.5E-08 56.9 14.2 134 190-341 56-242 (270)
203 KOG0820 Ribosomal RNA adenine 97.6 0.00022 4.7E-09 61.9 6.7 75 178-255 47-130 (315)
204 PF04816 DUF633: Family of unk 97.6 0.00057 1.2E-08 58.3 9.2 124 194-352 1-138 (205)
205 COG4798 Predicted methyltransf 97.6 0.00092 2E-08 55.2 9.9 138 187-339 45-203 (238)
206 PLN02668 indole-3-acetate carb 97.5 0.0032 6.9E-08 58.6 14.4 103 190-292 63-242 (386)
207 COG0357 GidB Predicted S-adeno 97.4 0.00037 8E-09 59.5 5.9 120 191-343 68-197 (215)
208 PF13679 Methyltransf_32: Meth 97.3 0.00076 1.7E-08 54.1 6.2 95 188-289 23-133 (141)
209 PRK04338 N(2),N(2)-dimethylgua 97.3 0.00061 1.3E-08 63.9 6.3 90 191-286 58-157 (382)
210 COG0500 SmtA SAM-dependent met 97.2 0.0027 5.9E-08 51.1 9.6 95 194-292 52-160 (257)
211 PF00398 RrnaAD: Ribosomal RNA 97.2 0.00088 1.9E-08 59.7 7.0 96 177-279 18-123 (262)
212 KOG3115 Methyltransferase-like 97.2 0.00044 9.5E-09 57.4 4.4 99 191-289 61-185 (249)
213 COG1189 Predicted rRNA methyla 97.2 0.014 3.1E-07 50.1 13.3 152 177-343 66-226 (245)
214 PF09339 HTH_IclR: IclR helix- 97.2 0.00017 3.8E-09 47.0 1.3 46 35-86 6-51 (52)
215 PF01170 UPF0020: Putative RNA 97.2 0.0014 3E-08 54.8 7.0 93 188-280 26-144 (179)
216 COG4262 Predicted spermidine s 97.2 0.0015 3.2E-08 59.2 7.3 94 189-288 288-408 (508)
217 KOG1269 SAM-dependent methyltr 97.1 0.00053 1.1E-08 63.5 4.5 101 190-293 110-221 (364)
218 TIGR00027 mthyl_TIGR00027 meth 97.1 0.0058 1.3E-07 54.3 10.9 148 189-339 80-248 (260)
219 PF11312 DUF3115: Protein of u 97.1 0.0023 5E-08 57.2 8.2 100 191-290 87-245 (315)
220 PRK11933 yebU rRNA (cytosine-C 97.0 0.0034 7.4E-08 60.4 9.2 102 188-289 111-244 (470)
221 COG1889 NOP1 Fibrillarin-like 97.0 0.03 6.4E-07 46.8 13.3 136 183-343 70-216 (231)
222 KOG3987 Uncharacterized conser 97.0 0.00059 1.3E-08 56.8 3.2 143 189-342 111-261 (288)
223 PRK10141 DNA-binding transcrip 97.0 0.00087 1.9E-08 51.5 4.0 68 24-100 8-75 (117)
224 KOG3201 Uncharacterized conser 97.0 0.00031 6.8E-09 56.1 1.5 95 191-287 30-140 (201)
225 KOG4589 Cell division protein 97.0 0.0053 1.1E-07 50.5 8.5 113 174-290 53-187 (232)
226 PHA00738 putative HTH transcri 96.9 0.0011 2.4E-08 49.2 3.9 62 32-102 12-73 (108)
227 PF01022 HTH_5: Bacterial regu 96.9 0.00057 1.2E-08 43.4 2.0 44 34-85 4-47 (47)
228 PF12840 HTH_20: Helix-turn-he 96.9 0.00091 2E-08 45.2 2.9 54 26-86 4-57 (61)
229 smart00550 Zalpha Z-DNA-bindin 96.9 0.002 4.3E-08 44.5 4.5 60 32-100 6-66 (68)
230 COG3315 O-Methyltransferase in 96.9 0.0044 9.6E-08 56.0 8.0 148 190-339 92-262 (297)
231 COG1041 Predicted DNA modifica 96.9 0.026 5.6E-07 51.5 12.7 99 188-288 195-311 (347)
232 COG4076 Predicted RNA methylas 96.9 0.0021 4.5E-08 52.8 5.1 96 192-289 34-137 (252)
233 KOG2798 Putative trehalase [Ca 96.8 0.02 4.2E-07 51.1 11.3 150 178-342 135-338 (369)
234 PF01269 Fibrillarin: Fibrilla 96.8 0.018 4E-07 49.0 10.7 132 188-343 71-214 (229)
235 KOG3420 Predicted RNA methylas 96.8 0.0028 6.1E-08 49.8 5.1 67 190-258 48-124 (185)
236 COG2384 Predicted SAM-dependen 96.7 0.024 5.2E-07 48.1 10.5 116 190-340 16-142 (226)
237 PF02475 Met_10: Met-10+ like- 96.7 0.0013 2.8E-08 55.8 2.9 90 189-284 100-199 (200)
238 PF03059 NAS: Nicotianamine sy 96.7 0.0045 9.8E-08 55.0 6.3 96 190-286 120-229 (276)
239 COG4301 Uncharacterized conser 96.6 0.01 2.2E-07 51.1 7.9 98 188-285 76-191 (321)
240 smart00346 HTH_ICLR helix_turn 96.6 0.0029 6.4E-08 46.4 4.1 57 34-100 7-63 (91)
241 TIGR02143 trmA_only tRNA (urac 96.6 0.0024 5.2E-08 59.5 4.5 51 192-244 199-256 (353)
242 PF02082 Rrf2: Transcriptional 96.6 0.0038 8.3E-08 45.0 4.5 49 48-103 24-72 (83)
243 PF02384 N6_Mtase: N-6 DNA Met 96.6 0.0035 7.6E-08 57.4 5.3 101 188-288 44-184 (311)
244 PF03492 Methyltransf_7: SAM d 96.6 0.033 7.2E-07 51.4 11.7 105 188-292 14-188 (334)
245 TIGR01444 fkbM_fam methyltrans 96.6 0.0027 5.8E-08 50.8 4.0 51 193-243 1-58 (143)
246 KOG1709 Guanidinoacetate methy 96.5 0.025 5.3E-07 47.7 9.4 101 189-292 100-211 (271)
247 PF09445 Methyltransf_15: RNA 96.5 0.0013 2.8E-08 53.7 1.8 62 193-256 2-77 (163)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.4 0.0033 7.2E-08 55.3 3.9 91 237-341 138-239 (256)
249 COG3897 Predicted methyltransf 96.4 0.025 5.5E-07 47.0 8.7 106 182-292 71-184 (218)
250 PF13578 Methyltransf_24: Meth 96.4 0.0013 2.8E-08 49.8 1.1 90 195-287 1-105 (106)
251 PF14947 HTH_45: Winged helix- 96.4 0.0024 5.2E-08 45.3 2.2 56 37-106 11-66 (77)
252 KOG1663 O-methyltransferase [S 96.4 0.021 4.5E-07 48.7 8.1 100 188-292 71-188 (237)
253 PRK05031 tRNA (uracil-5-)-meth 96.3 0.004 8.7E-08 58.2 4.2 51 192-244 208-265 (362)
254 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.024 5.1E-07 57.8 10.1 111 177-288 177-348 (702)
255 COG4627 Uncharacterized protei 96.2 0.0031 6.7E-08 50.1 2.4 79 194-288 6-87 (185)
256 PF13601 HTH_34: Winged helix 96.2 0.0031 6.8E-08 45.1 2.2 66 33-105 1-68 (80)
257 TIGR02987 met_A_Alw26 type II 96.2 0.017 3.8E-07 56.8 7.9 66 190-255 31-119 (524)
258 PF13412 HTH_24: Winged helix- 96.2 0.0055 1.2E-07 39.0 3.0 45 33-84 4-48 (48)
259 KOG2915 tRNA(1-methyladenosine 96.1 0.077 1.7E-06 46.5 10.5 105 178-290 94-213 (314)
260 COG3355 Predicted transcriptio 96.1 0.0087 1.9E-07 46.2 4.2 48 33-87 28-76 (126)
261 PF13463 HTH_27: Winged helix 96.1 0.0067 1.4E-07 41.7 3.4 58 37-102 8-68 (68)
262 PF01978 TrmB: Sugar-specific 96.1 0.003 6.6E-08 43.6 1.6 47 33-86 9-55 (68)
263 PF04703 FaeA: FaeA-like prote 96.1 0.009 2E-07 40.2 3.7 46 36-87 4-49 (62)
264 COG1414 IclR Transcriptional r 96.0 0.0077 1.7E-07 53.1 4.0 59 34-102 6-64 (246)
265 smart00419 HTH_CRP helix_turn_ 96.0 0.0092 2E-07 37.7 3.3 40 49-98 8-47 (48)
266 PF04989 CmcI: Cephalosporin h 96.0 0.048 1E-06 46.2 8.4 105 180-290 26-150 (206)
267 TIGR02431 pcaR_pcaU beta-ketoa 95.9 0.0077 1.7E-07 53.2 3.7 57 34-102 11-67 (248)
268 COG1092 Predicted SAM-dependen 95.9 0.02 4.3E-07 53.6 6.5 99 190-289 217-338 (393)
269 cd00092 HTH_CRP helix_turn_hel 95.9 0.021 4.6E-07 39.0 5.2 44 48-100 24-67 (67)
270 PF03602 Cons_hypoth95: Conser 95.9 0.0071 1.5E-07 50.7 3.2 97 190-290 42-155 (183)
271 KOG2918 Carboxymethyl transfer 95.9 0.17 3.8E-06 45.2 11.8 143 188-342 85-278 (335)
272 TIGR00006 S-adenosyl-methyltra 95.7 0.031 6.6E-07 50.5 6.6 66 178-244 9-80 (305)
273 PRK11569 transcriptional repre 95.7 0.013 2.7E-07 52.7 4.1 58 34-101 30-87 (274)
274 PRK15090 DNA-binding transcrip 95.6 0.013 2.8E-07 52.1 4.0 57 35-102 17-73 (257)
275 PRK10163 DNA-binding transcrip 95.6 0.014 3.1E-07 52.3 4.2 58 34-101 27-84 (271)
276 TIGR02702 SufR_cyano iron-sulf 95.6 0.017 3.8E-07 49.3 4.6 67 34-107 3-72 (203)
277 PRK09834 DNA-binding transcrip 95.6 0.016 3.4E-07 51.8 4.4 63 33-105 12-74 (263)
278 TIGR02337 HpaR homoprotocatech 95.6 0.029 6.4E-07 43.3 5.4 69 32-107 28-97 (118)
279 PF04072 LCM: Leucine carboxyl 95.6 0.046 9.9E-07 45.9 7.0 84 190-273 78-182 (183)
280 TIGR00308 TRM1 tRNA(guanine-26 95.5 0.043 9.3E-07 51.4 7.0 91 191-287 45-147 (374)
281 PF09012 FeoC: FeoC like trans 95.3 0.017 3.6E-07 40.0 2.9 43 37-86 5-47 (69)
282 PF07091 FmrO: Ribosomal RNA m 95.3 0.024 5.2E-07 49.3 4.4 100 189-290 104-211 (251)
283 PF01795 Methyltransf_5: MraW 95.3 0.038 8.3E-07 49.9 5.8 65 178-243 9-79 (310)
284 COG2345 Predicted transcriptio 95.3 0.024 5.2E-07 48.3 4.2 64 34-104 13-79 (218)
285 KOG2730 Methylase [General fun 95.2 0.024 5.1E-07 48.0 4.0 90 190-281 94-196 (263)
286 PF08461 HTH_12: Ribonuclease 95.2 0.021 4.6E-07 39.1 3.0 59 37-103 3-63 (66)
287 COG1959 Predicted transcriptio 95.2 0.029 6.3E-07 45.4 4.2 47 48-101 24-70 (150)
288 smart00347 HTH_MARR helix_turn 95.1 0.026 5.6E-07 41.8 3.5 67 33-106 11-78 (101)
289 PF12802 MarR_2: MarR family; 95.0 0.018 3.8E-07 38.7 2.3 49 33-86 6-54 (62)
290 PF07757 AdoMet_MTase: Predict 95.0 0.035 7.5E-07 41.5 3.8 32 189-222 57-88 (112)
291 PF03141 Methyltransf_29: Puta 95.0 0.081 1.8E-06 50.5 7.1 98 188-288 363-468 (506)
292 PRK10857 DNA-binding transcrip 94.9 0.041 8.8E-07 45.2 4.4 45 48-99 24-68 (164)
293 PRK03902 manganese transport t 94.8 0.038 8.2E-07 44.3 3.9 50 48-106 21-70 (142)
294 TIGR02010 IscR iron-sulfur clu 94.7 0.049 1.1E-06 43.2 4.3 46 48-100 24-69 (135)
295 PRK11512 DNA-binding transcrip 94.6 0.13 2.7E-06 41.3 6.6 48 33-87 41-88 (144)
296 KOG1562 Spermidine synthase [A 94.5 0.076 1.7E-06 47.1 5.4 102 188-290 119-239 (337)
297 PF01638 HxlR: HxlR-like helix 94.5 0.034 7.3E-07 40.7 2.7 62 37-106 10-73 (90)
298 KOG2793 Putative N2,N2-dimethy 94.5 0.22 4.8E-06 43.5 8.1 98 190-290 86-202 (248)
299 PF01047 MarR: MarR family; I 94.5 0.028 6.1E-07 37.4 2.1 47 34-87 5-51 (59)
300 COG4742 Predicted transcriptio 94.4 0.048 1E-06 47.8 4.0 68 27-108 8-75 (260)
301 TIGR00738 rrf2_super rrf2 fami 94.4 0.05 1.1E-06 42.9 3.8 46 48-100 24-69 (132)
302 KOG1099 SAM-dependent methyltr 94.4 0.082 1.8E-06 45.1 5.2 102 180-285 31-161 (294)
303 PF08220 HTH_DeoR: DeoR-like h 94.4 0.068 1.5E-06 35.4 3.8 44 36-86 4-47 (57)
304 PF07381 DUF1495: Winged helix 94.3 0.061 1.3E-06 39.1 3.7 69 31-106 8-87 (90)
305 COG4190 Predicted transcriptio 94.2 0.072 1.6E-06 41.0 4.0 53 27-86 59-111 (144)
306 PF04967 HTH_10: HTH DNA bindi 94.1 0.059 1.3E-06 35.0 2.8 42 26-77 6-47 (53)
307 PRK06474 hypothetical protein; 94.1 0.085 1.8E-06 44.0 4.6 74 26-105 5-82 (178)
308 COG2520 Predicted methyltransf 94.0 0.14 3E-06 47.0 6.3 97 189-292 187-294 (341)
309 KOG4058 Uncharacterized conser 94.0 0.22 4.8E-06 39.5 6.5 106 179-292 62-177 (199)
310 COG1321 TroR Mn-dependent tran 94.0 0.082 1.8E-06 42.9 4.3 50 48-106 23-72 (154)
311 COG0742 N6-adenine-specific me 94.0 0.22 4.7E-06 41.5 6.8 97 190-288 43-155 (187)
312 PRK06266 transcription initiat 94.0 0.13 2.8E-06 42.8 5.4 46 34-86 24-69 (178)
313 COG2265 TrmA SAM-dependent met 93.9 0.075 1.6E-06 50.7 4.5 97 180-285 284-394 (432)
314 PRK11050 manganese transport r 93.8 0.28 6E-06 39.8 7.1 77 12-105 22-98 (152)
315 COG4189 Predicted transcriptio 93.8 0.11 2.3E-06 44.3 4.6 56 25-87 16-71 (308)
316 KOG2352 Predicted spermine/spe 93.8 1.2 2.6E-05 42.6 12.0 102 192-294 50-170 (482)
317 KOG3924 Putative protein methy 93.7 0.18 3.8E-06 46.6 6.2 108 181-292 184-313 (419)
318 PRK03573 transcriptional regul 93.6 0.41 8.9E-06 38.3 7.8 64 37-106 36-100 (144)
319 smart00420 HTH_DEOR helix_turn 93.6 0.11 2.4E-06 33.2 3.6 43 37-86 5-47 (53)
320 smart00418 HTH_ARSR helix_turn 93.4 0.14 3.1E-06 34.1 4.1 35 48-86 9-43 (66)
321 TIGR01884 cas_HTH CRISPR locus 93.4 0.12 2.5E-06 44.2 4.4 60 33-102 144-203 (203)
322 COG0144 Sun tRNA and rRNA cyto 93.4 1.2 2.6E-05 41.5 11.4 104 188-291 154-292 (355)
323 TIGR00122 birA_repr_reg BirA b 93.3 0.15 3.2E-06 35.2 4.1 45 34-86 2-46 (69)
324 PF05958 tRNA_U5-meth_tr: tRNA 93.2 0.059 1.3E-06 50.2 2.5 61 178-242 186-253 (352)
325 KOG2187 tRNA uracil-5-methyltr 93.2 0.095 2.1E-06 50.0 3.8 56 187-244 380-442 (534)
326 cd00090 HTH_ARSR Arsenical Res 93.1 0.14 3E-06 35.4 3.8 57 34-100 9-65 (78)
327 PHA02943 hypothetical protein; 92.8 0.15 3.3E-06 40.3 3.9 55 36-100 15-69 (165)
328 COG0116 Predicted N6-adenine-s 92.8 1 2.2E-05 41.9 9.8 100 187-287 188-344 (381)
329 PRK11920 rirA iron-responsive 92.8 0.15 3.2E-06 41.4 3.9 46 48-100 23-68 (153)
330 PF01325 Fe_dep_repress: Iron 92.8 0.12 2.7E-06 34.5 2.9 35 48-86 21-55 (60)
331 TIGR01889 Staph_reg_Sar staphy 92.6 0.12 2.7E-06 39.2 3.1 51 32-87 25-77 (109)
332 PRK11014 transcriptional repre 92.6 0.16 3.4E-06 40.6 3.9 45 48-99 24-68 (141)
333 smart00345 HTH_GNTR helix_turn 92.5 0.21 4.6E-06 32.8 3.9 34 49-86 19-53 (60)
334 PF10672 Methyltrans_SAM: S-ad 92.5 0.097 2.1E-06 47.0 2.8 98 190-288 123-239 (286)
335 TIGR02944 suf_reg_Xantho FeS a 92.5 0.14 3E-06 40.2 3.4 45 48-99 24-68 (130)
336 smart00344 HTH_ASNC helix_turn 92.5 0.15 3.2E-06 38.6 3.4 46 33-85 4-49 (108)
337 PF00325 Crp: Bacterial regula 92.4 0.09 2E-06 30.1 1.6 31 49-83 2-32 (32)
338 cd07153 Fur_like Ferric uptake 92.3 0.25 5.4E-06 37.8 4.5 63 34-99 3-66 (116)
339 PF03514 GRAS: GRAS domain fam 92.2 0.56 1.2E-05 44.1 7.6 108 179-289 100-245 (374)
340 PF01861 DUF43: Protein of unk 91.9 4.3 9.3E-05 35.3 11.8 90 190-283 44-144 (243)
341 KOG0822 Protein kinase inhibit 91.8 0.99 2.1E-05 43.4 8.5 125 153-285 335-476 (649)
342 COG0275 Predicted S-adenosylme 91.7 0.45 9.8E-06 42.6 5.9 66 178-244 12-84 (314)
343 COG3432 Predicted transcriptio 91.6 0.091 2E-06 38.4 1.3 54 48-107 30-83 (95)
344 PF01726 LexA_DNA_bind: LexA D 91.5 0.21 4.6E-06 34.0 2.9 36 48-86 24-59 (65)
345 TIGR00373 conserved hypothetic 91.4 0.21 4.6E-06 40.7 3.4 45 35-86 17-61 (158)
346 PRK15431 ferrous iron transpor 91.3 0.31 6.7E-06 34.2 3.5 44 37-87 7-50 (78)
347 PRK14165 winged helix-turn-hel 91.1 0.23 5E-06 42.6 3.4 53 48-106 20-72 (217)
348 PF08279 HTH_11: HTH domain; 91.0 0.33 7.1E-06 31.6 3.4 40 36-81 4-43 (55)
349 cd07377 WHTH_GntR Winged helix 91.0 0.57 1.2E-05 31.4 4.7 33 50-86 26-58 (66)
350 PRK13777 transcriptional regul 90.4 0.72 1.6E-05 38.6 5.7 46 35-87 48-93 (185)
351 PF10354 DUF2431: Domain of un 90.4 5.3 0.00011 32.8 10.7 121 196-343 2-154 (166)
352 TIGR01610 phage_O_Nterm phage 90.2 0.38 8.3E-06 35.5 3.5 44 48-99 46-89 (95)
353 PRK05638 threonine synthase; V 89.9 0.37 8E-06 46.4 4.1 64 34-106 373-438 (442)
354 smart00529 HTH_DTXR Helix-turn 89.9 0.33 7.2E-06 35.7 3.0 46 52-106 2-47 (96)
355 COG1733 Predicted transcriptio 89.8 1.1 2.4E-05 34.6 5.9 79 11-106 11-91 (120)
356 COG1064 AdhP Zn-dependent alco 89.7 2.4 5.3E-05 39.0 8.9 93 188-290 164-262 (339)
357 PRK04172 pheS phenylalanyl-tRN 89.3 0.26 5.6E-06 48.1 2.6 69 33-111 7-75 (489)
358 cd08283 FDH_like_1 Glutathione 89.3 3.3 7.2E-05 39.0 10.0 99 188-288 182-307 (386)
359 PF11899 DUF3419: Protein of u 89.3 0.57 1.2E-05 43.9 4.7 60 233-292 275-339 (380)
360 COG2512 Predicted membrane-ass 89.1 0.46 1E-05 42.0 3.7 51 33-90 196-246 (258)
361 PLN02853 Probable phenylalanyl 88.9 0.33 7.1E-06 46.7 2.8 70 32-111 3-73 (492)
362 PF05971 Methyltransf_10: Prot 88.8 0.54 1.2E-05 42.4 4.0 71 190-261 102-190 (299)
363 PRK10870 transcriptional repre 88.5 0.48 1E-05 39.4 3.3 67 34-106 57-125 (176)
364 PF06163 DUF977: Bacterial pro 88.4 0.67 1.5E-05 35.6 3.7 50 30-86 10-59 (127)
365 PF13545 HTH_Crp_2: Crp-like h 88.4 0.51 1.1E-05 32.9 2.9 34 49-86 28-61 (76)
366 PRK11179 DNA-binding transcrip 88.1 0.59 1.3E-05 37.9 3.5 47 32-85 9-55 (153)
367 PF06859 Bin3: Bicoid-interact 88.0 0.15 3.2E-06 38.4 -0.1 85 250-342 3-93 (110)
368 COG1510 Predicted transcriptio 87.9 0.58 1.2E-05 38.1 3.2 36 48-87 40-75 (177)
369 PRK11169 leucine-responsive tr 87.9 0.53 1.1E-05 38.7 3.1 48 31-85 13-60 (164)
370 COG1378 Predicted transcriptio 87.5 1.1 2.5E-05 39.3 5.2 58 32-99 16-73 (247)
371 COG1522 Lrp Transcriptional re 87.2 0.75 1.6E-05 37.1 3.6 48 32-86 8-55 (154)
372 COG4565 CitB Response regulato 87.1 0.61 1.3E-05 39.5 3.0 44 37-86 163-206 (224)
373 COG1846 MarR Transcriptional r 87.1 0.68 1.5E-05 35.4 3.3 70 30-106 20-90 (126)
374 KOG1596 Fibrillarin and relate 86.4 3.3 7.2E-05 35.9 7.1 99 188-290 154-264 (317)
375 PF06962 rRNA_methylase: Putat 86.3 0.83 1.8E-05 36.3 3.3 72 216-289 1-94 (140)
376 PTZ00326 phenylalanyl-tRNA syn 85.9 0.7 1.5E-05 44.6 3.2 72 32-112 6-77 (494)
377 PF04182 B-block_TFIIIC: B-blo 85.8 1 2.2E-05 31.6 3.2 50 32-86 2-51 (75)
378 PF02002 TFIIE_alpha: TFIIE al 85.7 0.64 1.4E-05 35.0 2.3 44 36-86 17-60 (105)
379 COG1497 Predicted transcriptio 85.6 0.83 1.8E-05 39.3 3.1 62 34-106 12-73 (260)
380 PF07789 DUF1627: Protein of u 85.4 1.4 3E-05 34.8 4.0 46 48-99 5-50 (155)
381 COG1063 Tdh Threonine dehydrog 84.9 6.1 0.00013 36.7 8.9 93 192-292 170-274 (350)
382 PF12793 SgrR_N: Sugar transpo 84.7 1.2 2.7E-05 34.1 3.5 37 48-88 18-54 (115)
383 PRK10742 putative methyltransf 84.4 2.1 4.5E-05 37.6 5.1 41 180-223 77-119 (250)
384 PRK09424 pntA NAD(P) transhydr 84.4 7.5 0.00016 38.1 9.5 94 190-288 164-286 (509)
385 PF00392 GntR: Bacterial regul 84.3 0.88 1.9E-05 30.7 2.3 35 48-86 22-57 (64)
386 PF02153 PDH: Prephenate dehyd 84.2 1.6 3.4E-05 38.7 4.5 76 204-285 1-77 (258)
387 PF13730 HTH_36: Helix-turn-he 84.1 0.85 1.8E-05 29.6 2.1 29 51-83 27-55 (55)
388 COG0287 TyrA Prephenate dehydr 84.1 6 0.00013 35.5 8.1 88 192-284 4-95 (279)
389 PF10007 DUF2250: Uncharacteri 84.0 1.4 3.1E-05 32.1 3.4 47 33-86 8-54 (92)
390 cd01842 SGNH_hydrolase_like_5 83.9 2.1 4.6E-05 35.3 4.7 41 250-290 52-102 (183)
391 COG3510 CmcI Cephalosporin hyd 83.7 16 0.00034 30.7 9.5 103 190-294 69-187 (237)
392 PRK09775 putative DNA-binding 83.6 1.4 3E-05 42.4 4.0 55 37-103 5-59 (442)
393 KOG2539 Mitochondrial/chloropl 83.3 3.4 7.3E-05 39.4 6.3 101 190-290 200-318 (491)
394 PRK04214 rbn ribonuclease BN/u 83.2 1.4 3.1E-05 42.0 4.0 43 48-99 309-351 (412)
395 TIGR00498 lexA SOS regulatory 82.5 1.4 3.1E-05 37.3 3.3 48 33-86 7-59 (199)
396 PRK13509 transcriptional repre 82.2 1.5 3.3E-05 38.7 3.5 46 34-86 7-52 (251)
397 PF12324 HTH_15: Helix-turn-he 82.0 1 2.2E-05 31.5 1.8 35 37-78 29-63 (77)
398 PF14394 DUF4423: Domain of un 82.0 2.3 5E-05 35.2 4.3 47 49-104 39-87 (171)
399 PRK07502 cyclohexadienyl dehyd 81.9 7.4 0.00016 35.4 8.1 90 191-285 6-98 (307)
400 COG2933 Predicted SAM-dependen 81.9 4.1 9E-05 35.8 5.9 84 189-280 210-296 (358)
401 PF01189 Nol1_Nop2_Fmu: NOL1/N 81.7 2.5 5.4E-05 38.1 4.8 103 188-290 83-222 (283)
402 PF05584 Sulfolobus_pRN: Sulfo 81.3 2.6 5.7E-05 29.1 3.6 44 35-86 8-51 (72)
403 PF05711 TylF: Macrocin-O-meth 81.3 3.7 8E-05 36.1 5.5 97 190-288 74-213 (248)
404 PF08784 RPA_C: Replication pr 80.4 1.4 3.1E-05 32.8 2.4 50 33-86 48-98 (102)
405 PF13404 HTH_AsnC-type: AsnC-t 80.2 1.9 4.2E-05 26.4 2.5 38 33-77 4-41 (42)
406 PF05206 TRM13: Methyltransfer 80.1 4.6 0.0001 35.8 5.8 35 188-222 16-55 (259)
407 PRK10906 DNA-binding transcrip 79.5 1.8 4E-05 38.2 3.1 47 33-86 6-52 (252)
408 PF02636 Methyltransf_28: Puta 79.3 2.8 6.1E-05 37.0 4.3 34 190-223 18-59 (252)
409 PRK11886 bifunctional biotin-- 79.3 2.7 5.8E-05 38.6 4.3 56 35-101 7-62 (319)
410 TIGR03433 padR_acidobact trans 79.1 8.6 0.00019 28.5 6.2 66 37-106 9-81 (100)
411 COG1568 Predicted methyltransf 79.1 4.3 9.3E-05 36.0 5.1 206 51-287 36-260 (354)
412 KOG1209 1-Acyl dihydroxyaceton 79.1 27 0.00058 30.0 9.5 78 189-287 5-86 (289)
413 PF08221 HTH_9: RNA polymerase 79.0 1.8 3.9E-05 29.1 2.2 43 37-86 18-60 (62)
414 PF13814 Replic_Relax: Replica 79.0 2.7 5.9E-05 35.1 3.9 61 40-107 3-71 (191)
415 PRK10434 srlR DNA-bindng trans 78.7 1.9 4.2E-05 38.2 3.0 46 34-86 7-52 (256)
416 COG1802 GntR Transcriptional r 78.5 3.5 7.6E-05 35.8 4.6 37 47-87 37-73 (230)
417 PF07109 Mg-por_mtran_C: Magne 78.3 8.4 0.00018 28.4 5.7 78 256-345 3-86 (97)
418 PF13384 HTH_23: Homeodomain-l 78.2 1.5 3.2E-05 27.7 1.6 41 33-82 6-46 (50)
419 KOG0024 Sorbitol dehydrogenase 78.1 14 0.0003 33.7 8.1 97 188-292 167-278 (354)
420 PF08222 HTH_CodY: CodY helix- 77.9 1.8 3.8E-05 28.3 1.8 39 48-91 3-41 (61)
421 COG3413 Predicted DNA binding 77.6 2.2 4.7E-05 36.7 2.9 44 24-77 159-202 (215)
422 PRK07417 arogenate dehydrogena 77.1 12 0.00027 33.4 7.8 83 193-283 2-87 (279)
423 PHA02591 hypothetical protein; 76.9 2.3 5E-05 29.6 2.3 32 37-76 51-82 (83)
424 COG5631 Predicted transcriptio 76.8 8.2 0.00018 31.1 5.6 80 20-106 64-150 (199)
425 PF01475 FUR: Ferric uptake re 76.6 2.5 5.4E-05 32.5 2.8 67 31-100 7-74 (120)
426 PF13518 HTH_28: Helix-turn-he 76.5 3.1 6.7E-05 26.4 2.8 30 50-83 13-42 (52)
427 PF05732 RepL: Firmicute plasm 76.5 2.8 6.2E-05 34.4 3.2 45 50-103 76-120 (165)
428 PRK01747 mnmC bifunctional tRN 76.5 3.7 8E-05 41.8 4.7 97 190-286 57-205 (662)
429 PRK11534 DNA-binding transcrip 76.3 3.8 8.3E-05 35.3 4.2 36 48-87 29-64 (224)
430 PF02319 E2F_TDP: E2F/DP famil 76.3 0.97 2.1E-05 31.3 0.3 37 48-86 23-62 (71)
431 PRK09802 DNA-binding transcrip 76.0 2.8 6.1E-05 37.4 3.3 47 33-86 18-64 (269)
432 PRK12423 LexA repressor; Provi 75.9 3 6.5E-05 35.5 3.3 35 49-86 25-59 (202)
433 PF02254 TrkA_N: TrkA-N domain 75.9 3.8 8.2E-05 31.0 3.6 81 199-285 4-94 (116)
434 PF03428 RP-C: Replication pro 75.3 3.2 6.9E-05 34.5 3.2 41 51-97 72-113 (177)
435 PF03444 HrcA_DNA-bdg: Winged 75.3 3.7 8E-05 28.9 3.0 35 48-86 22-56 (78)
436 KOG1098 Putative SAM-dependent 75.0 4.9 0.00011 39.6 4.7 70 171-244 25-95 (780)
437 COG0640 ArsR Predicted transcr 74.8 6.9 0.00015 28.3 4.8 53 27-86 20-72 (110)
438 PF03686 UPF0146: Uncharacteri 74.7 7.9 0.00017 30.1 5.0 89 190-290 13-105 (127)
439 PF03269 DUF268: Caenorhabditi 74.7 9.3 0.0002 31.1 5.5 26 267-292 91-116 (177)
440 PF11994 DUF3489: Protein of u 74.4 9 0.0002 26.5 4.6 55 36-98 14-71 (72)
441 PRK11753 DNA-binding transcrip 74.1 3.6 7.7E-05 34.9 3.4 34 49-86 168-201 (211)
442 TIGR03338 phnR_burk phosphonat 74.1 4.4 9.5E-05 34.6 3.9 36 48-87 33-68 (212)
443 PRK05225 ketol-acid reductoiso 73.7 4.3 9.2E-05 38.9 4.0 91 191-289 36-133 (487)
444 PRK09954 putative kinase; Prov 73.7 3.8 8.2E-05 38.2 3.7 44 34-84 5-48 (362)
445 cd00315 Cyt_C5_DNA_methylase C 73.4 21 0.00046 31.9 8.3 122 193-338 2-140 (275)
446 PF02295 z-alpha: Adenosine de 73.0 1.8 3.8E-05 29.6 1.0 60 33-100 5-64 (66)
447 TIGR01321 TrpR trp operon repr 72.9 4.5 9.7E-05 29.6 3.1 40 31-78 41-80 (94)
448 TIGR03697 NtcA_cyano global ni 72.8 4 8.6E-05 34.0 3.3 34 49-86 143-176 (193)
449 PF05331 DUF742: Protein of un 72.7 4.6 0.0001 30.8 3.3 34 49-86 55-88 (114)
450 KOG1501 Arginine N-methyltrans 72.4 4.3 9.2E-05 38.4 3.5 88 190-278 66-165 (636)
451 PF14740 DUF4471: Domain of un 72.3 4.7 0.0001 36.3 3.7 79 234-339 201-287 (289)
452 COG1565 Uncharacterized conser 72.1 11 0.00025 34.8 6.1 60 159-223 51-118 (370)
453 COG1675 TFA1 Transcription ini 72.0 4.6 0.0001 33.4 3.3 45 35-86 21-65 (176)
454 COG5379 BtaA S-adenosylmethion 71.8 6.2 0.00013 35.3 4.2 57 233-289 307-368 (414)
455 KOG2651 rRNA adenine N-6-methy 71.3 8.9 0.00019 35.7 5.2 43 181-224 144-186 (476)
456 TIGR02787 codY_Gpos GTP-sensin 71.1 4.4 9.6E-05 35.1 3.1 45 36-86 187-231 (251)
457 COG0686 Ald Alanine dehydrogen 70.8 12 0.00025 34.0 5.8 92 191-285 168-266 (371)
458 PRK11161 fumarate/nitrate redu 70.8 4 8.7E-05 35.3 3.0 34 49-86 184-217 (235)
459 TIGR03879 near_KaiC_dom probab 70.3 2.9 6.2E-05 29.1 1.5 33 49-85 32-64 (73)
460 PRK10411 DNA-binding transcrip 70.3 5 0.00011 35.2 3.4 45 35-86 7-51 (240)
461 PRK11414 colanic acid/biofilm 69.6 7.5 0.00016 33.4 4.4 36 47-86 32-67 (221)
462 COG1255 Uncharacterized protei 69.1 49 0.0011 25.3 8.4 89 190-290 13-105 (129)
463 TIGR01202 bchC 2-desacetyl-2-h 68.9 32 0.00069 31.2 8.6 85 191-288 145-232 (308)
464 COG1349 GlpR Transcriptional r 68.1 4.7 0.0001 35.7 2.8 46 34-86 7-52 (253)
465 PRK09462 fur ferric uptake reg 68.0 9.6 0.00021 30.5 4.4 67 31-99 16-83 (148)
466 PRK09334 30S ribosomal protein 67.8 5.4 0.00012 28.7 2.5 35 48-86 40-74 (86)
467 TIGR02698 CopY_TcrY copper tra 67.7 9.1 0.0002 30.0 4.1 47 33-86 5-55 (130)
468 cd08237 ribitol-5-phosphate_DH 67.5 28 0.00062 32.0 8.1 93 189-288 162-257 (341)
469 smart00531 TFIIE Transcription 67.5 5.5 0.00012 32.0 2.9 41 36-83 5-45 (147)
470 PRK13918 CRP/FNR family transc 67.3 6.1 0.00013 33.2 3.3 34 49-86 149-182 (202)
471 TIGR02147 Fsuc_second hypothet 67.1 8.3 0.00018 34.4 4.2 45 49-102 137-183 (271)
472 PRK15001 SAM-dependent 23S rib 66.9 43 0.00094 31.5 9.1 90 192-289 46-144 (378)
473 PF02796 HTH_7: Helix-turn-hel 66.6 4.6 0.0001 25.0 1.8 23 49-75 21-43 (45)
474 PF14502 HTH_41: Helix-turn-he 66.5 12 0.00026 23.6 3.6 33 50-86 7-39 (48)
475 PRK10046 dpiA two-component re 66.3 7 0.00015 33.6 3.5 45 36-86 166-210 (225)
476 PF09681 Phage_rep_org_N: N-te 66.1 8.9 0.00019 29.7 3.6 43 48-99 52-94 (121)
477 PRK13699 putative methylase; P 66.0 9.6 0.00021 33.1 4.3 51 235-285 2-70 (227)
478 PRK09391 fixK transcriptional 66.0 9.4 0.0002 33.0 4.3 34 49-86 179-212 (230)
479 PRK11639 zinc uptake transcrip 65.7 12 0.00025 30.9 4.6 54 31-86 25-79 (169)
480 PF12692 Methyltransf_17: S-ad 65.2 37 0.00081 27.2 6.9 97 191-289 29-136 (160)
481 PF01210 NAD_Gly3P_dh_N: NAD-d 65.1 8.2 0.00018 31.2 3.5 89 193-286 1-102 (157)
482 COG3373 Uncharacterized protei 64.7 6.2 0.00013 28.3 2.3 65 33-104 18-92 (108)
483 PRK04424 fatty acid biosynthes 64.5 3.9 8.4E-05 34.3 1.5 46 34-86 9-54 (185)
484 PF07848 PaaX: PaaX-like prote 64.4 4.6 0.0001 27.9 1.6 48 48-101 19-69 (70)
485 PRK10402 DNA-binding transcrip 64.4 6.9 0.00015 33.8 3.1 34 49-86 169-202 (226)
486 PRK00215 LexA repressor; Valid 64.4 8.4 0.00018 32.7 3.6 36 48-86 22-57 (205)
487 PF00165 HTH_AraC: Bacterial r 64.1 5.5 0.00012 24.1 1.8 26 49-78 8-33 (42)
488 COG0735 Fur Fe2+/Zn2+ uptake r 64.1 11 0.00023 30.3 3.9 67 32-101 21-88 (145)
489 PRK11642 exoribonuclease R; Pr 63.8 8.8 0.00019 40.0 4.2 57 36-99 23-79 (813)
490 PRK06719 precorrin-2 dehydroge 63.6 73 0.0016 25.8 8.8 79 190-276 12-93 (157)
491 COG0286 HsdM Type I restrictio 63.0 43 0.00093 32.8 8.6 51 178-229 175-230 (489)
492 COG1339 Transcriptional regula 62.5 7.5 0.00016 32.5 2.7 51 49-106 19-70 (214)
493 PRK13239 alkylmercury lyase; P 62.4 6.7 0.00015 33.3 2.6 39 33-78 23-61 (206)
494 PF06969 HemN_C: HemN C-termin 62.1 8.8 0.00019 25.8 2.7 45 49-103 20-65 (66)
495 PRK01381 Trp operon repressor; 61.7 10 0.00022 28.1 3.0 39 31-77 41-79 (99)
496 PRK08507 prephenate dehydrogen 61.7 34 0.00075 30.4 7.2 84 193-284 2-88 (275)
497 PRK09990 DNA-binding transcrip 61.5 11 0.00023 33.1 3.9 36 48-87 29-65 (251)
498 PLN02494 adenosylhomocysteinas 60.7 26 0.00056 34.0 6.4 99 178-288 241-342 (477)
499 TIGR00635 ruvB Holliday juncti 60.3 6.6 0.00014 35.6 2.4 35 48-86 254-289 (305)
500 PF03807 F420_oxidored: NADP o 59.5 4.2 9.2E-05 29.6 0.8 64 215-284 26-91 (96)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=319.82 Aligned_cols=338 Identities=50% Similarity=0.842 Sum_probs=303.0
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCC-CCCCCcCcHHHHHHHHhcccceeee
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPT-KNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++......++++++++..++++.+|+|+||||.|.+++ + ..|+|..+.. ++|..+.+++|+||.|++.+++++.
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~ 76 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCR 76 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceee
Confidence 45566788999999999999999999999999999963 2 7888888874 4778999999999999999999998
Q ss_pred ccCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHH
Q 018576 87 LDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHF 166 (353)
Q Consensus 87 ~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (353)
...+ . .|.+++.++.++.+.+..++.+++.....+..++.|..+.++++.++.++...+|..+++|...+......+
T Consensus 77 ~~~~--~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~ 153 (342)
T KOG3178|consen 77 LVGG--E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDF 153 (342)
T ss_pred eecc--e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHH
Confidence 4322 3 899999999888666667899999888889999999999999999999999999977899998888778899
Q ss_pred HHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-CCeeEEeCCCCCC
Q 018576 167 NTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-PHIEHVAGDMFQS 245 (353)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~rv~~~~~d~~~~ 245 (353)
++.|...+....+.+++.+.+++.....+|||+|.|..+..++..||+++++.+|+|.+++.+... +.|+.+.+|++..
T Consensus 154 ~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 154 NGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD 233 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc
Confidence 999999999988889998888888999999999999999999999999999999999999999988 8999999999999
Q ss_pred CCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC-CCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE-VPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 246 ~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
.|++|+|++.++||+|+|++|.++|++++..|+|+|.+++.|.+.|. ..............|..|+..+.+|++|+.+|
T Consensus 234 ~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e 313 (342)
T KOG3178|consen 234 TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKE 313 (342)
T ss_pred CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHH
Confidence 99999999999999999999999999999999999999999998875 33222234566778889998887799999999
Q ss_pred HHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 325 FMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|+.++.++||.+..+...+..+++|+++|
T Consensus 314 ~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 314 FQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999886
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1.3e-39 Score=296.80 Aligned_cols=289 Identities=16% Similarity=0.288 Sum_probs=212.9
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
...+|++|+++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++. ++.|+||+.+..
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~------~~~y~~t~~~~~ 68 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE------DGKWSLTEFADY 68 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec------CCcEecchhHHh
Confidence 4579999999999999988 49999999999999 999999999999999999975 588999999998
Q ss_pred ccCCCCCC---ChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHH-hchhhhHHH
Q 018576 105 YVPNKDGV---SLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMY-NHTSLIMSN 180 (353)
Q Consensus 105 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~ 180 (353)
++.+.++. ++.++..+. .......|.+|.++++. .+++...++ +....++. ..|...|. .......+.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~ 140 (306)
T TIGR02716 69 MFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQL 140 (306)
T ss_pred hccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHH
Confidence 77765532 122333332 11223568899999984 444432221 21212222 23444443 333334455
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEE
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAI 252 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i 252 (353)
+.+.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.++++ +|++++.+|+++ ++|.+|+|
T Consensus 141 l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 141 LLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV 219 (306)
T ss_pred HHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence 666666 778899999999999999999999999999999998888776542 689999999987 67767999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh--CCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ--NPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~t~~~~~~ll~ 330 (353)
++++++|+|+++.+.++|++++++|+|||+++|.|...++...+. .....+..+... ..-...++.++|.++|+
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~ 295 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN----FDYLSHYILGAGMPFSVLGFKEQARYKEILE 295 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch----hhHHHHHHHHcccccccccCCCHHHHHHHHH
Confidence 999999999988889999999999999999999998776532211 111111111000 00112345799999999
Q ss_pred hcCCceeeEe
Q 018576 331 GAGFSGIRSD 340 (353)
Q Consensus 331 ~aGf~~v~~~ 340 (353)
++||+.++++
T Consensus 296 ~aGf~~v~~~ 305 (306)
T TIGR02716 296 SLGYKDVTMV 305 (306)
T ss_pred HcCCCeeEec
Confidence 9999988754
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=6.5e-40 Score=289.12 Aligned_cols=236 Identities=33% Similarity=0.618 Sum_probs=206.6
Q ss_pred ccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHh
Q 018576 93 RRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYN 172 (353)
Q Consensus 93 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 172 (353)
+++|+||+.|+.|+.+++..++..++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.++++....|+.+|..
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 68999999999999998866788888776789999999999999999999999999988999999999999999999999
Q ss_pred chhhhH-HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCCCCcE
Q 018576 173 HTSLIM-SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDA 251 (353)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~ 251 (353)
.+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.+|+
T Consensus 83 ~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~ 161 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADV 161 (241)
T ss_dssp HHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESE
T ss_pred hhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccc
Confidence 888776 77778887 8888999999999999999999999999999999999999888889999999999998888999
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCC--CEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPED--GKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pg--G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+++++||+|+++++.++|++++++|+|| |+|+|+|.+.++....+........+|+.|++++ +|++||.+||++||
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll 240 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALL 240 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHH
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHh
Confidence 99999999999999999999999999999 9999999999887555432222357899999987 79999999999998
Q ss_pred H
Q 018576 330 T 330 (353)
Q Consensus 330 ~ 330 (353)
+
T Consensus 241 ~ 241 (241)
T PF00891_consen 241 K 241 (241)
T ss_dssp H
T ss_pred C
Confidence 5
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=2.9e-19 Score=153.61 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=119.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
..++.+|||||||||.++..+++..+..+++++|. +.|++.++++ ..|+|+.+|+.. |+|++ |+|++++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34689999999999999999999999999999999 8899988764 228999999999 99986 99999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhC----C------------CCccc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQN----P------------GGKER 320 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~------------~g~~~ 320 (353)
|++++| ..++|++++|+|||||++++.|...|..+.... ....+.+. .+... . .-...
T Consensus 129 lrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHH---HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 999986 469999999999999999999998876532211 11111111 11111 0 01224
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCce
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGNF 346 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~~ 346 (353)
+.+++.++++++||+.+.......+.
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~ 229 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGI 229 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeee
Confidence 78999999999999998866665443
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.79 E-value=4.3e-18 Score=151.32 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=115.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC--cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
..+..+|||||||+|.++..+++.+ |+.+++++|+ ++|++.++++ ++++++++|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999999886 6789999999 7888877532 478999999988 77764 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccc-cchhh--h-hhCCC-----------Cc
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH-IDVLM--M-TQNPG-----------GK 318 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~-----------g~ 318 (353)
+.+++|++++. .++|++++++|||||++++.|...+...... ....+ +...+ . ..... ..
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999998764 6899999999999999999998765431100 00000 00000 0 00000 12
Q ss_pred ccCHHHHHHHHHhcCCceeeEeeeCCceE
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLVTGNFW 347 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~~~~~~ 347 (353)
..+.+++.++++++||+.++......+..
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 46899999999999999998887765544
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.79 E-value=5.8e-20 Score=159.69 Aligned_cols=155 Identities=20% Similarity=0.299 Sum_probs=81.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~ 256 (353)
..++.+|||||||||.++..+++.. |+.+++++|. +.|++.++++ .+|+++++|+.+ |++++ |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5567899999999999999999986 6789999999 8899888753 589999999998 88876 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh----hhhhCCC-----------CcccC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL----MMTQNPG-----------GKERT 321 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------g~~~t 321 (353)
.||+++|. .++|++++|+|||||+++|+|...|..+... ..+...+... -.....+ ....+
T Consensus 125 glrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH--HHHHH--------------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhh--ceeeeeecccccccccccccccccccccccccccccc
Confidence 99999874 5899999999999999999999887642110 0000000000 0000000 11236
Q ss_pred HHHHHHHHHhcCCceeeEeeeCCce
Q 018576 322 KHEFMTLATGAGFSGIRSDLVTGNF 346 (353)
Q Consensus 322 ~~~~~~ll~~aGf~~v~~~~~~~~~ 346 (353)
.+++.++++++||+.++..+...+.
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~ 225 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGI 225 (233)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 8899999999999999988876553
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=1.7e-17 Score=147.68 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=119.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-- 249 (353)
...+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .+++.+..+|+.+ ++|.+
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 345677676 7788999999999999999998875 679999999 677776654 3579999999987 77754
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++++++.++..++|++++++|||||++++.+.......... . .... ... .......+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~--~---~~~~--~~~-~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD--E---EFKA--YIK-KRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH--H---HHHH--HHH-hcCCCCCCHHHHHHHH
Confidence 999999998888766778999999999999999999998664421111 0 0000 111 1122346889999999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||+.++.....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999887754
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.76 E-value=1.5e-18 Score=152.85 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i~~~~~ 257 (353)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ .+++++.+|+.+ +.+..|+|++.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999974 7899999999 7888877642 468999999987 6665699999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhh-----------------hhCCCCccc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMM-----------------TQNPGGKER 320 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~g~~~ 320 (353)
+|++++++...+|++++++|+|||.+++.|...+++..... . ...++.. .........
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH--L---LIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH--H---HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99998877889999999999999999999987655322110 0 0010000 000012356
Q ss_pred CHHHHHHHHHhcCCceeeEeee
Q 018576 321 TKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
|.+++.++++++||+.+++...
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHH
Confidence 8999999999999998765443
No 9
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.74 E-value=4.7e-17 Score=137.34 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=111.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC------CeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY------IKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~- 249 (353)
.....++|||+||||..+..+++..+. .++++.|+ |+|++.++++ .++.++++|..+ |+|.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 445689999999999999999998877 78999999 8999877553 459999999999 99976
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccch---------------hhhhh
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDV---------------LMMTQ 313 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 313 (353)
|+|++.+-+.+|++. .+.|++++|+|||||++.+.|+-.-+.....+... ..+++. .++..
T Consensus 178 ~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~iagd~~sYqYLve 254 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIAGDRKSYQYLVE 254 (296)
T ss_pred ceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhhhhHhhhhhHHh
Confidence 999999999999885 69999999999999999999986544211110000 001111 01110
Q ss_pred CCCCcccCHHHHHHHHHhcCCceee
Q 018576 314 NPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 314 ~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
. =.+..+.+++..+.++|||+.+.
T Consensus 255 S-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 255 S-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred h-hhcCCCHHHHHHHHHHcCCcccc
Confidence 0 01234789999999999999887
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=2.9e-17 Score=143.97 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=121.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 249 (353)
.++..+. ..++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 3455555 6667899999999999999999986 6789999999 777776653 2579999999987 66654
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh----h-----------
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT----Q----------- 313 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~----~----------- 313 (353)
|+|++.+++|++++. .++|+++.++|+|||++++.+...+...... ......+...+-. .
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIPGFK--QLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCChHHH--HHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 999999999988764 5899999999999999999987654321100 0000000000000 0
Q ss_pred CCCCcccCHHHHHHHHHhcCCceeeEeeeC-CceEEEEEeC
Q 018576 314 NPGGKERTKHEFMTLATGAGFSGIRSDLVT-GNFWVMEFYK 353 (353)
Q Consensus 314 ~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~-~~~~vi~~~~ 353 (353)
.......+.+++.++|+++||+.+++.... +..+++..+|
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 001123578999999999999999988876 5666777665
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=6.2e-17 Score=143.89 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=110.0
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCC-C-cEEEec
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPK-G-DAIFLK 255 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~-~-D~i~~~ 255 (353)
..+++.++ ...+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++++.+|+.+..+. . |+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEEe
Confidence 46677676 66778999999999999999999999999999999 7888888764 689999998763333 3 999999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccc---ccccchh-hhhhCCCCcccCHHHHHHHHHh
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS---NSHIDVL-MMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
.+||++++. .+++++++++|+|||++++........+........ ..+.... ...........+.+++.++|++
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 999998764 689999999999999999874321111000000000 0010000 0000001234589999999999
Q ss_pred cCCcee
Q 018576 332 AGFSGI 337 (353)
Q Consensus 332 aGf~~v 337 (353)
+||++.
T Consensus 175 aGf~v~ 180 (255)
T PRK14103 175 AGCKVD 180 (255)
T ss_pred CCCeEE
Confidence 999854
No 12
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.73 E-value=9.6e-18 Score=148.14 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHH--CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSK--YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i~~~~~ 257 (353)
.+..+|||||||+|..+..+++. .|+.+++++|. +.+++.++++ .+++++++|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45689999999999999999884 58999999999 8899887653 379999999987 5555699999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-----------hh-hhCCC-CcccCHHH
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-----------MM-TQNPG-GKERTKHE 324 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~-g~~~t~~~ 324 (353)
+|++++++..+++++++++|+|||.+++.|....+....... ....+.... .. ....+ -...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999987777899999999999999999999776544222100 000000000 00 00001 12348999
Q ss_pred HHHHHHhcCCceeeEe
Q 018576 325 FMTLATGAGFSGIRSD 340 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~ 340 (353)
..++|+++||+.+.++
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999977653
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.73 E-value=1.1e-16 Score=147.70 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=110.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999988 679999999 6677665431 579999999987 67655 99999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC--ccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT--SIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
+|++++. .++|++++++|||||+++|.+......... .........++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 9999764 689999999999999999998765322111 000000011111111101 12235899999999999999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
No 14
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.70 E-value=5.1e-16 Score=141.30 Aligned_cols=140 Identities=24% Similarity=0.328 Sum_probs=110.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
....+|||||||+|.++..+++.++..+++++|. +++++.+++. .+++++.+|+.+ +++.+ |+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3467999999999999999999988889999999 7788877653 578999999987 66654 999999999999
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++. .++|++++++|+|||++++.+...+... ... ...+.++ ...+.+++.++|+++||+.+++..
T Consensus 192 ~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCH--HHHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence 875 4789999999999999999876543310 000 0111111 125789999999999999998877
Q ss_pred eC
Q 018576 342 VT 343 (353)
Q Consensus 342 ~~ 343 (353)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 64
No 15
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.67 E-value=3.4e-16 Score=129.00 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=130.6
Q ss_pred HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCC
Q 018576 166 FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMF 243 (353)
Q Consensus 166 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~ 243 (353)
|.+.-...+++ ..+++..++ .....+|+|+|||+|..+..|++++|...++|+|. ++|++.|+++ ++++|..+|+.
T Consensus 8 Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 8 YLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred HHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 44444444454 457888888 88899999999999999999999999999999998 8999988765 89999999998
Q ss_pred CCCCC--CcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC---CCCc
Q 018576 244 QSVPK--GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN---PGGK 318 (353)
Q Consensus 244 ~~~p~--~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~ 318 (353)
+-.|+ .|+++++-+||.++|. .++|.++...|.|||.|.+.-+-.-+.++............+...... ....
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~ 163 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAP 163 (257)
T ss_pred hcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCC
Confidence 85553 4999999999988765 699999999999999999976543332221100000000001111000 0234
Q ss_pred ccCHHHHHHHHHhcCCceeeE------eeeCCceEEEEEeC
Q 018576 319 ERTKHEFMTLATGAGFSGIRS------DLVTGNFWVMEFYK 353 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~------~~~~~~~~vi~~~~ 353 (353)
..+...|-++|...+=+ +.+ +++++..+|+++.|
T Consensus 164 v~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 164 LPSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred CCCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 45889999999888733 333 33457778888765
No 16
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=4.6e-15 Score=130.53 Aligned_cols=168 Identities=18% Similarity=0.232 Sum_probs=118.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
.++..+. ..+..+|||||||+|.++..+++.+| ..+++++|. +.+++.+++. .++.++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 3444444 44568999999999999999999997 789999998 6666665542 468999999987 44433
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhh----hhCCC-------
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMM----TQNPG------- 316 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------- 316 (353)
|+|++.+++|++++ ...+|+++++.|+|||++++.+...+...... .........+. ....+
T Consensus 121 ~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 99999999999875 46899999999999999999998765432100 00000000000 00000
Q ss_pred -----CcccCHHHHHHHHHhcCCceeeEeeeC-CceEEEEEeC
Q 018576 317 -----GKERTKHEFMTLATGAGFSGIRSDLVT-GNFWVMEFYK 353 (353)
Q Consensus 317 -----g~~~t~~~~~~ll~~aGf~~v~~~~~~-~~~~vi~~~~ 353 (353)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578899999999999999998865 4456666654
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=2.6e-15 Score=145.35 Aligned_cols=152 Identities=14% Similarity=0.255 Sum_probs=116.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~- 249 (353)
.+.+++.+. ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.++++ .++.+..+|+.. ++|.+
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 345666665 6667899999999999999999876 679999999 6777766542 479999999987 66654
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++..+++++++. .++|++++++|+|||++++.+.......... . .... .. ..+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~--~~-~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEY--IK-QRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHH--HH-hcCCCCCCHHHHHHH
Confidence 999999999998764 5899999999999999999998754321111 0 1111 11 113456789999999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
++++||+++.+...
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999877654
No 18
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=2.2e-15 Score=131.90 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=127.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
.+.+++.+. +.++.+|||||||.|.+++..+++| +++++++++ ++..+.++++ .++++.-.|..+..+.-
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 456778887 9999999999999999999999999 899999999 5566655542 47888888876522224
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|-|++...++++..+....+++++++.|+|||++++.....+..+.. ...++..--.+|+|..++..++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999889999999999999999999999887664321 22333333446899999999999999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
.++||++..+....
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988776554
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=4.2e-15 Score=126.68 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=106.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~- 249 (353)
+.+++.++ ...+.+|||+|||+|..+..++++ +.+++++|. +.+++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 45555555 555689999999999999999986 569999999 7777766542 458888899876 55555
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++|++++++...++++++++|+|||++++++...+++.... .. -...++.+++.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VG--------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CC--------CCCccCHHHHHHHh
Confidence 999999999998877889999999999999999887776544321100 00 01235788899988
Q ss_pred HhcCCceeeE
Q 018576 330 TGAGFSGIRS 339 (353)
Q Consensus 330 ~~aGf~~v~~ 339 (353)
+ ||+.++.
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 7 8988765
No 20
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=2.6e-15 Score=130.93 Aligned_cols=137 Identities=15% Similarity=0.247 Sum_probs=107.0
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-CCCCC-cEEEeccccccC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDW 261 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~ 261 (353)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+.. |+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 666666654 2578999999876 55555 999999999998
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++ ...+|++++++|+|||++++.+...+...... .. .. .....+.++|.++++++||+.++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~-----~~-~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIE--------HE-----ET-TSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCcccc--------cc-----cc-ccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 75 46999999999999999999987533211000 00 00 12245789999999999999998877
Q ss_pred eCC
Q 018576 342 VTG 344 (353)
Q Consensus 342 ~~~ 344 (353)
...
T Consensus 145 ~~~ 147 (224)
T smart00828 145 ASL 147 (224)
T ss_pred CcH
Confidence 643
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=7.4e-15 Score=134.15 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=107.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC-------CCCCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP-------LHPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~rv~~~~~d~~~-~~p~~- 249 (353)
.+...++ .-.+.+|||||||+|.++..+++..+. +++++|. +.++..++ ...+++++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3444454 334689999999999999999998765 6999998 44443221 13579999999877 55444
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..+|||..+. ..+|+++++.|+|||.+++.+...+......... ......+.. .-..+|.+++.++|
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~~---~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMRN---VYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCcc---ceeCCCHHHHHHHH
Confidence 999999999997654 6899999999999999998776655432211000 000000000 01245889999999
Q ss_pred HhcCCceeeEeee
Q 018576 330 TGAGFSGIRSDLV 342 (353)
Q Consensus 330 ~~aGf~~v~~~~~ 342 (353)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988765
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.64 E-value=8.5e-15 Score=132.33 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=106.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC-------CCCCCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA-------PLHPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~p~~- 249 (353)
.++..+. ...+.+|||||||+|.++..++...+. +++++|. +.++..+ ....++.+...++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4555444 445689999999999999999887654 7999998 5455432 123578888888765 33334
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..+|||+.+. ..+|++++++|+|||.|++.+...+........ .......|.. .-...+.+++.++|
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~---p~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLV---PKDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccC---chHHHHhccc---cccCCCHHHHHHHH
Confidence 999999999998764 689999999999999999988765432111000 0000000100 11235889999999
Q ss_pred HhcCCceeeEeee
Q 018576 330 TGAGFSGIRSDLV 342 (353)
Q Consensus 330 ~~aGf~~v~~~~~ 342 (353)
+++||+.+++...
T Consensus 262 ~~aGF~~V~i~~~ 274 (314)
T TIGR00452 262 EKVGFENFRILDV 274 (314)
T ss_pred HHCCCeEEEEEec
Confidence 9999999987754
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=6.2e-16 Score=119.59 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=82.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCC-CC-CCCCC-cEEEecc-cc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDM-FQ-SVPKG-DAIFLKW-IL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~-~~-~~p~~-D~i~~~~-~L 258 (353)
+.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++++|+ .. ..++. |+|++.. ++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57999999999999999999999999999999 778876654 37999999999 33 33444 9999999 66
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 259 HDWDD-EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 259 h~~~~-~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65443 567899999999999999999875
No 24
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.63 E-value=1.3e-14 Score=126.37 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=118.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG--D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 250 (353)
.++..+. ..++.+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444444 446789999999999999999999987 79999998 666666544 2578999999987 55543 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC----------C----
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP----------G---- 316 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---- 316 (353)
+|++.+++|+.++ ...+++++++.|+|||++++.+...+..... ....+..+....+ +
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALL------KKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhh------HHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 9999999998765 5689999999999999999998865432110 0011111000000 0
Q ss_pred -----CcccCHHHHHHHHHhcCCceeeEeeeCCc-eEEEEEeC
Q 018576 317 -----GKERTKHEFMTLATGAGFSGIRSDLVTGN-FWVMEFYK 353 (353)
Q Consensus 317 -----g~~~t~~~~~~ll~~aGf~~v~~~~~~~~-~~vi~~~~ 353 (353)
....+.++|.++|+++||+.+++.+...+ ..+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 11347889999999999999999988766 44555543
No 25
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=3.8e-15 Score=132.47 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=111.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 249 (353)
...+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+ ++..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPGK 127 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCCC
Confidence 456777777 8889999999999999999999998 789999998 445554432 2679999999865 3335
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|.|++...+.++.......+++++.+.|+|||++++...+.+...... ......++.....+|+|...+.+++...
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 999999999999888889999999999999999999888775531110 0000113333333689999999999999
Q ss_pred HHhcCCceeeEeeeC
Q 018576 329 ATGAGFSGIRSDLVT 343 (353)
Q Consensus 329 l~~aGf~~v~~~~~~ 343 (353)
++++||++..+...+
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999998887654
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=1.4e-15 Score=137.98 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
++.+|||||||+|.++..+++ ++.+++++|. +++++.++++ .++.++.+|+.+ +.+.+ |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 3679999999 7788877643 378999999876 44443 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhCCC-----CcccCHHHHHHHHHhc
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQNPG-----GKERTKHEFMTLATGA 332 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----g~~~t~~~~~~ll~~a 332 (353)
||+.+. ..+|++++++|||||.+++.+...... . ......... ..-+.+. .+.++.+++.++|+++
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~---~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---A---YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---H---HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 999875 589999999999999999987643210 0 000000000 0000111 2357899999999999
Q ss_pred CCceeeEeee
Q 018576 333 GFSGIRSDLV 342 (353)
Q Consensus 333 Gf~~v~~~~~ 342 (353)
||+++++..+
T Consensus 281 Gf~i~~~~G~ 290 (322)
T PLN02396 281 SVDVKEMAGF 290 (322)
T ss_pred CCeEEEEeee
Confidence 9999887543
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.62 E-value=8.6e-15 Score=131.43 Aligned_cols=145 Identities=17% Similarity=0.282 Sum_probs=109.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~ 256 (353)
..++.+|||||||+|..+..+++.. ++.+++++|. +.+++.++++ ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5567899999999999888877765 6678999999 7788877652 588999999987 66654 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
++|++++. .++|++++++|||||++++.+....... .. . ...+..+...+ .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~---~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-PE---E--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-CH---H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 99987653 5899999999999999999998754321 10 0 11122222111 244568899999999999998
Q ss_pred eeEee
Q 018576 337 IRSDL 341 (353)
Q Consensus 337 v~~~~ 341 (353)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87644
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=1.8e-14 Score=128.37 Aligned_cols=106 Identities=22% Similarity=0.348 Sum_probs=90.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCCCCC-CC-cEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQSVP-KG-DAIF 253 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p-~~-D~i~ 253 (353)
...++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ +++.++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 446677666 67788999999999999999999999999999999 7888888765 679999999876333 34 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
++.+||++++. .++|++++++|+|||.+++.
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 99999988764 58999999999999999886
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.61 E-value=1.6e-14 Score=127.08 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=111.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-- 249 (353)
.+.+.+. ..++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.++++ .++++...|+.. +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3455555 6778899999999999999999998 7889999999 6666666542 578999999876 55543
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc-cccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++.+++|++++. ..++++++++|+|||++++.+.......... ...........+.- . .....+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--H-FADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--c-CCCCcHHHHHHHH
Confidence 999999999998764 6899999999999999999886432110000 00000111111110 1 2233456789999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
++++||+.+++...
T Consensus 164 l~~aGf~~~~~~~~ 177 (241)
T PRK08317 164 FREAGLTDIEVEPY 177 (241)
T ss_pred HHHcCCCceeEEEE
Confidence 99999998766443
No 30
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=5.1e-15 Score=142.71 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=106.9
Q ss_pred ChhhhcccCchHHHHHHHHHHhchhhh--HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh
Q 018576 151 HAFEYGRVDPRFNKHFNTAMYNHTSLI--MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE 227 (353)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 227 (353)
.+|+++...++..++|...|....... .......++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 568888887777777776554322211 111122233 55678999999999999999999999999999999 66787
Q ss_pred hCCCC-----CCeeEEeCCCCC-C--CCCC--cEEEeccccccC-----------CchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 228 HAPLH-----PHIEHVAGDMFQ-S--VPKG--DAIFLKWILHDW-----------DDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 228 ~a~~~-----~rv~~~~~d~~~-~--~p~~--D~i~~~~~Lh~~-----------~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.+++. .+++++++|..+ + ++.+ |+|+++.++|+| ++.+..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 77542 467888899876 3 4443 999999999976 2456789999999999999999999
Q ss_pred eeecCC
Q 018576 287 ELMLPE 292 (353)
Q Consensus 287 e~~~~~ 292 (353)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 976554
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=4.6e-15 Score=122.28 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=96.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCC-C-cEEEeccccccCCc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPK-G-DAIFLKWILHDWDD 263 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~-~-D~i~~~~~Lh~~~~ 263 (353)
.....+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. . |+|++..+||++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 35678999999999999999966533 9999999 667766 233333332223 2333 3 99999999999985
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
...+|+++++.|+|||++++.++...... ......+ ...... ......++.++|+++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~~----~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDPS----PRSFLKW-RYDRPY-GGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSHH----HHHHHHC-CGTCHH-TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcchh----hhHHHhc-CCcCcc-CceeccCCHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999998753210 0001111 111110 0134568999999999999999875
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=1.2e-14 Score=129.22 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=107.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC--CCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ--SVPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~~p~- 248 (353)
.+++.++ .++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++++|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555554 45679999999999999999987 468999999 7888877652 578999999865 2333
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc-cccccccc-cchh---hhhhCCCCcccCH
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNSH-IDVL---MMTQNPGGKERTK 322 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~-~~~~---~~~~~~~g~~~t~ 322 (353)
. |+|++..+||+++++ .++|+++.++|+|||++++............ ....+... ..+. -.... -....+.
T Consensus 112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 3 999999999998765 5899999999999999998765422100000 00000000 0000 00000 1223578
Q ss_pred HHHHHHHHhcCCceeeEeeeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~ 343 (353)
+++.++|+++||+++.+.-+.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEE
Confidence 999999999999998765543
No 33
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.58 E-value=6.1e-14 Score=124.72 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=86.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchH----HHHHHHHHCC-----CCeEEEecc-hHHHhhCCCC----------------
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGV----TLQAITSKYP-----YIKGINFDQ-PHVIEHAPLH---------------- 232 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~---------------- 232 (353)
+.+....+ ...+.+|+|+|||||. +++.+++.+| +.+++++|+ +.+++.|++.
T Consensus 89 p~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 89 PLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLA 167 (264)
T ss_pred HHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHh
Confidence 34443332 3456899999999996 5666666655 578999999 7888877752
Q ss_pred -----------------CCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 233 -----------------PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 233 -----------------~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.+|+|..+|+.+ +.+.+ |+|++.++||+++++...+++++++++|+|||+|++-..
T Consensus 168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999988 44443 999999999999988888999999999999999998543
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.56 E-value=6.7e-14 Score=119.09 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=103.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 250 (353)
..+.+.+. ...+.+|||+|||+|..+..++++ +.+++++|. +.+++.+++. -.+++...|+.. +.+.. |
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 34555555 445689999999999999999985 579999999 7777765432 136777778765 44444 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|+++.++|+++.+....++++++++|+|||++++++....+.... .. +.....+.+++.++|.
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------~~--------~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------HM--------PFSFTFKEDELRQYYA 160 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------CC--------CcCccCCHHHHHHHhC
Confidence 9999999999987778899999999999999988877653321000 00 0122467889999886
Q ss_pred hcCCceeeEe
Q 018576 331 GAGFSGIRSD 340 (353)
Q Consensus 331 ~aGf~~v~~~ 340 (353)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 58877665
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=7.2e-15 Score=109.78 Aligned_cols=88 Identities=20% Similarity=0.363 Sum_probs=75.8
Q ss_pred EEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHH
Q 018576 195 VDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 195 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~ 267 (353)
||||||+|..+..+++. +..+++++|. +.+++.+++. .++.+..+|+.+ +++++ |+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999999 8899999999 6677776653 567799999988 78765 999999999998 4467
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018576 268 KLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~i 285 (353)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 36
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=4.8e-14 Score=115.50 Aligned_cols=177 Identities=16% Similarity=0.126 Sum_probs=118.3
Q ss_pred HHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCe
Q 018576 163 NKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHI 235 (353)
Q Consensus 163 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv 235 (353)
...|++.|.++.+.....+- .+-+.+....||+||||||..-... .--|..++|.+|. +.|.+.+.+ +.++
T Consensus 50 t~~yne~~~~ykrelFs~i~-~~~gk~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIY-YFLGKSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHhcccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 45677777776554433332 2332455678899999999873222 1125678999998 666655433 2556
Q ss_pred e-EEeCCCCC-C-CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh
Q 018576 236 E-HVAGDMFQ-S-VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM 310 (353)
Q Consensus 236 ~-~~~~d~~~-~-~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 310 (353)
. |+.++..+ + ++++ |.|++..+|+-.. +.++.|++++++|||||+++++|+...+...... .+....+...
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~--i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNR--ILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHH--HHHHHhchhh
Confidence 6 88888877 4 5655 9999999998754 4689999999999999999999998776533211 1122223222
Q ss_pred hhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceE
Q 018576 311 MTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFW 347 (353)
Q Consensus 311 ~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~ 347 (353)
...+ .|...|++.|+. |++|-|+..+......+..
T Consensus 204 ~~~~-dGC~ltrd~~e~-Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 204 HLES-DGCVLTRDTGEL-LEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred heec-cceEEehhHHHH-hhhcccccchhhcccCCce
Confidence 2222 577778877765 7889999988776654443
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=1.6e-13 Score=120.25 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=101.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCC-C-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSK----YPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPK-G-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~-~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++.+...+... +.+. . |+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 346689999999999998888764 45679999999 8888887764 456666665443 3333 3 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh------CCC-----CcccCHHHH
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ------NPG-----GKERTKHEF 325 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----g~~~t~~~~ 325 (353)
+||++++++..++|++++++++ |.+++.+...+... . .......... ..+ -+.++.+++
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~-------~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA-------Y-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH-------H-HHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999998878899999999998 67777766543210 0 0000000000 001 134689999
Q ss_pred HHHHHhcCCceeeEeee
Q 018576 326 MTLATGAGFSGIRSDLV 342 (353)
Q Consensus 326 ~~ll~~aGf~~v~~~~~ 342 (353)
.+++++ ||++....+.
T Consensus 208 ~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 208 AALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHhhC-CCeEEeccce
Confidence 999999 9998877665
No 38
>PRK05785 hypothetical protein; Provisional
Probab=99.54 E-value=2.2e-13 Score=118.42 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
.+.+|||||||||.++..+++.+ +.+++++|. ++|++.+++. ..++++|+.+ |++++ |+|++.++||++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 36799999999999999999987 579999999 8899988764 3567888887 77765 999999999998764
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh---hhhhCCCC-------------cccCHHHHHHHH
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL---MMTQNPGG-------------KERTKHEFMTLA 329 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------~~~t~~~~~~ll 329 (353)
.++|++++++||| .+.++|...|+...... ....++... +...+ ++ ...+.+++.+++
T Consensus 127 -~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~--~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 127 -EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRK--YLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred -HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHH--HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6899999999999 35566665544211000 000111100 00011 11 123789999999
Q ss_pred HhcCCceeeEeeeCCceE-EEEEe
Q 018576 330 TGAGFSGIRSDLVTGNFW-VMEFY 352 (353)
Q Consensus 330 ~~aGf~~v~~~~~~~~~~-vi~~~ 352 (353)
+++| ..++......+.. +...+
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEe
Confidence 9984 6677777765543 44443
No 39
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=3e-13 Score=119.99 Aligned_cols=145 Identities=13% Similarity=0.155 Sum_probs=105.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAI 252 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i 252 (353)
...+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ +.+++.++++ ..+.++.+|+.+ +++++ |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445556565 445689999999999999888764 578999999 8888888764 446789999987 66654 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh--CCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ--NPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~t~~~~~~ll~ 330 (353)
+++.++|+.++ ...+|++++++|+|||.+++.......-+ .+...+.... .......+.++|.+++.
T Consensus 108 ~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---------el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP---------ELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH---------HHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 99999997655 46899999999999999999876533210 0111111100 00233468899999999
Q ss_pred hcCCce
Q 018576 331 GAGFSG 336 (353)
Q Consensus 331 ~aGf~~ 336 (353)
..|++.
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888764
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.52 E-value=5e-15 Score=111.89 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=59.9
Q ss_pred EEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C---CeeEEeCCCCCCCC-CC-cEEEeccccccCC
Q 018576 195 VDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P---HIEHVAGDMFQSVP-KG-DAIFLKWILHDWD 262 (353)
Q Consensus 195 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~---rv~~~~~d~~~~~p-~~-D~i~~~~~Lh~~~ 262 (353)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ . ++++...|.....+ +. |+|++.++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999999999999999999 7888888775 2 23444444444223 34 999999999999
Q ss_pred chHHHHHHHHHHHhCCCCCEE
Q 018576 263 DEHCLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l 283 (353)
++...+|+++++.|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 44579999999999999986
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.52 E-value=4.1e-13 Score=118.12 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCCCC--cEEEeccccccCCc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~ 263 (353)
.+.+|||||||+|.++..+++.+|..+++++|. +.++..+++. +++.++.+|+.+ +++.. |+|++.+++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999999 6677666543 578999999987 55544 99999999998765
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
..++|++++++|+|||.+++.++..... ......... . .....+.++|.++++++ |+.+.+.
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~---------~~~~~~~~~--~-~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFSTFGPGTL---------HELRQSFGQ--H-GLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEeCCccCH---------HHHHHHHHH--h-ccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4689999999999999999986543221 001111100 1 33456888999999988 8876543
No 42
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.51 E-value=4.1e-14 Score=115.65 Aligned_cols=139 Identities=23% Similarity=0.262 Sum_probs=99.6
Q ss_pred CCCCeEEEEcCCchHHHHHHH-HHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-C--CCCC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAIT-SKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-S--VPKG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~-D~i~~~~ 256 (353)
.+..+|||+|||+|.++..++ +.+|+.+++++|. +.+++.+++ .++++|.++|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5578999999999 888888765 2689999999998 4 3334 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
++|++.+. ..+|+++.+.|+|+|.+++.+.......... ...... ...........+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQ-LEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHH-HHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHH-HHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99998765 5889999999999999999998732110000 000000 0011111111112 6779999999998
No 43
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.51 E-value=8e-13 Score=110.41 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=118.2
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecchH-H---Hhh-CC--CCCCee-EEeCCCCCC-CC---------CC-cEEE
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-V---IEH-AP--LHPHIE-HVAGDMFQS-VP---------KG-DAIF 253 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~---~~~-a~--~~~rv~-~~~~d~~~~-~p---------~~-D~i~ 253 (353)
+|||||||||..+..+++.+|+++..--|... . |+. .. ..+++. -+..|+.++ .| .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999999999987777622 1 211 11 123332 234455442 22 23 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+.+++|-.+...+..+++.+.++|+|||.|++.-++..+..-. ......+|.......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t---s~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT---SESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC---CcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999887654211 1222345554444334566789999999999999
Q ss_pred CceeeEeeeCCceEEEEEeC
Q 018576 334 FSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 334 f~~v~~~~~~~~~~vi~~~~ 353 (353)
++.++.+.++...-++.++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998888888776
No 44
>PRK04266 fibrillarin; Provisional
Probab=99.50 E-value=1e-12 Score=113.77 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=95.4
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh----hCCCCCCeeEEeCCCCCC-----CCCC-cEE
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE----HAPLHPHIEHVAGDMFQS-----VPKG-DAI 252 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~-----~p~~-D~i 252 (353)
.++ ..++.+|||+|||+|.++..+++..+..+++++|. +.+++ .+++.+++.++.+|...+ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 355 67788999999999999999999988678999999 65555 445557899999998653 2333 888
Q ss_pred EeccccccCCch-HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 253 FLKWILHDWDDE-HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 253 ~~~~~Lh~~~~~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
++ +.+++ ....+|++++++|||||+++|.-...+. |+.. ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~--------------d~~~-----~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSI--------------DVTK-----DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccc--------------cCcC-----CHH-HHHHHHHHHHHH
Confidence 74 33332 3346799999999999999995221110 0000 001 112445699999
Q ss_pred cCCceeeEeeeCCc
Q 018576 332 AGFSGIRSDLVTGN 345 (353)
Q Consensus 332 aGf~~v~~~~~~~~ 345 (353)
+||+.++......+
T Consensus 201 aGF~~i~~~~l~p~ 214 (226)
T PRK04266 201 GGFEILEVVDLEPY 214 (226)
T ss_pred cCCeEEEEEcCCCC
Confidence 99999998887533
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.50 E-value=4.3e-13 Score=125.30 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=114.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCCCCCCC-cEEE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQSVPKG-DAIF 253 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p~~-D~i~ 253 (353)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.++++ ..+++...|+.+ .+.. |+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence 34556665 6777899999999999999999876 579999999 7788776653 247788888754 2333 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+..++++.++.....++++++++|+|||++++.+...+...... ..+++.. .+|+|...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence 99999998877778999999999999999999887654321110 1111111 146777888999888766 58
Q ss_pred CceeeEeeeCC
Q 018576 334 FSGIRSDLVTG 344 (353)
Q Consensus 334 f~~v~~~~~~~ 344 (353)
|.+..+...+.
T Consensus 305 ~~v~d~~~~~~ 315 (383)
T PRK11705 305 FVMEDWHNFGA 315 (383)
T ss_pred cEEEEEecChh
Confidence 99887765543
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=2.6e-13 Score=131.44 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=109.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC---CCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ---SVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~---~~p~~ 249 (353)
...+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.+++ .+++.++++|+.. ++|.+
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345566665 4456799999999999999999875 48999998 777776543 2578999999864 45544
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++++..++|++++++|+|||++++.|.+........ . . ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999988889999999999999999999997654321100 0 0 00122356789999
Q ss_pred HHHhcCCceee
Q 018576 328 LATGAGFSGIR 338 (353)
Q Consensus 328 ll~~aGf~~v~ 338 (353)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998764
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.50 E-value=4.5e-13 Score=113.40 Aligned_cols=124 Identities=16% Similarity=0.294 Sum_probs=95.9
Q ss_pred HhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEe
Q 018576 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFL 254 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~ 254 (353)
..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|...+.+.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 56778999999999999999999999999999999 7777766542 56899999875545544 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
....++ ...+++++++.|+|||++++..... .+.+++.+++++.||
T Consensus 104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCGV 149 (187)
T ss_pred CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCCC
Confidence 876543 3578999999999999998754321 124567789999999
Q ss_pred ceeeEee
Q 018576 335 SGIRSDL 341 (353)
Q Consensus 335 ~~v~~~~ 341 (353)
+.+++..
T Consensus 150 ~~~~~~~ 156 (187)
T PRK08287 150 SELDCVQ 156 (187)
T ss_pred CcceEEE
Confidence 8776544
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.50 E-value=6e-13 Score=115.57 Aligned_cols=146 Identities=13% Similarity=0.078 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCCcEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKGDAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~~~~~Lh~ 260 (353)
....+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++.+..+|+.+....-|+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45689999999999999999886 458999998 7788777642 3789999998763222399999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh--hCCCCcccCHHHHHHHHHhcCCceee
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT--QNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
++.+....+++++++.+++++.+.+.. .... . .....+.-.... ..+.-..++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAP----KTAW---L-AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECC----CchH---H-HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 987778899999999988765544321 1100 0 000000000000 00012245889999999999999998
Q ss_pred EeeeCC
Q 018576 339 SDLVTG 344 (353)
Q Consensus 339 ~~~~~~ 344 (353)
......
T Consensus 204 ~~~~~~ 209 (219)
T TIGR02021 204 EGLVST 209 (219)
T ss_pred eecccc
Confidence 876543
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=2.8e-13 Score=115.80 Aligned_cols=103 Identities=18% Similarity=0.414 Sum_probs=88.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCCCCCCC--cEEEeccccccCCc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQSVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~~~~ 263 (353)
..++.+|||||||+|.++..+++..|..+++++|+ +.+++.|++ .+++.+..+|+.++++.+ |+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567999999999999999999889999999999 789998877 477889999988766554 99999999999987
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
++..++++++++++ +++++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 77889999999997 4789988886544
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=5.6e-13 Score=120.40 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
.++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. -++++...|+.. .+++. |+|++..+||+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999885 579999999 6677765432 368888888876 44444 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
++++....++++++++|+|||++++++....+....+ .+....++.+++.++++ +|++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 9877889999999999999999888766543321100 01122467889999996 48887764
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.48 E-value=1.4e-12 Score=109.66 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~ 261 (353)
.++.+|||+|||+|.++..+++..+ +++++|. +.+++.++++ .+++++.+|..+..+.. |+|+++..+|..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999998 7777766542 35788999987643334 999999888766
Q ss_pred Cch-------------------HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 262 DDE-------------------HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 262 ~~~-------------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
++. -..++|+++.++|+|||++++++.... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~ 146 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GE 146 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------Ch
Confidence 532 135789999999999999999875321 14
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.++.+++++.||+...+...+.++-.+.++|
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 5678899999999988888887777777664
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=4.2e-14 Score=107.24 Aligned_cols=88 Identities=24% Similarity=0.418 Sum_probs=73.1
Q ss_pred EEEEcCCchHHHHHHHHHC---CCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEec-ccccc
Q 018576 194 LVDVGGNLGVTLQAITSKY---PYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLK-WILHD 260 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~-~~Lh~ 260 (353)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++. .++++++.|+.+ ++..+ |+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 7788877653 479999999987 54443 999995 55999
Q ss_pred CCchHHHHHHHHHHHhCCCCC
Q 018576 261 WDDEHCLKLLKNCYKSVPEDG 281 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG 281 (353)
+++++..++|+++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
No 53
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.43 E-value=2.4e-12 Score=116.88 Aligned_cols=96 Identities=13% Similarity=0.252 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-----C--CeeEEeCCCCCC--CCC-----C-cEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-----P--HIEHVAGDMFQS--VPK-----G-DAI 252 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~--rv~~~~~d~~~~--~p~-----~-D~i 252 (353)
++.+|||+|||+|..+..|++..+ ..+++++|+ ++|++.++++ + +|.++++|+.+. ++. . .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999987 589999999 6777666432 3 366789999762 332 2 356
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
++..+++++++++..++|++++++|+|||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 667899999988999999999999999999986
No 54
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=9e-13 Score=110.90 Aligned_cols=145 Identities=21% Similarity=0.267 Sum_probs=107.0
Q ss_pred CeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-----CCCCC--cEEEecc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-----SVPKG--DAIFLKW 256 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-----~~p~~--D~i~~~~ 256 (353)
.+||+||||.|....-+++..|+ +++...|. |..++..+++ .++.....|+.. +.+.+ |+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999988 89999998 7788877665 456666666654 22234 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCC---cccCHHHHHHHHHhcC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGG---KERTKHEFMTLATGAG 333 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~t~~~~~~ll~~aG 333 (353)
+|..++.+....++++++++|||||.|++-|....+-.... .. ....++....+-. +| ..++.+++..++.++|
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRG-DGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh-cc-CCceeecceEEcc-CCceeeeccHHHHHHHHHhcc
Confidence 99999999999999999999999999999987653321000 00 0112222222211 23 2368999999999999
Q ss_pred CceeeE
Q 018576 334 FSGIRS 339 (353)
Q Consensus 334 f~~v~~ 339 (353)
|..++.
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 987764
No 55
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.39 E-value=2.3e-13 Score=115.24 Aligned_cols=143 Identities=20% Similarity=0.193 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC---C--eeEEeCCCCC-CCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP---H--IEHVAGDMFQ-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---r--v~~~~~d~~~-~~p~~--D~i~~~~~Lh~ 260 (353)
.+.+|||||||.|.++..+++. +.+++++|. +..++.|+.+. . +++.+...++ ....+ |+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4689999999999999999998 489999999 77899888762 2 3455555544 22223 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhCCCC-----cccCHHHHHHHHHhcCC
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQNPGG-----KERTKHEFMTLATGAGF 334 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g-----~~~t~~~~~~ll~~aGf 334 (353)
.++++ .+++++.+.+||||.+++........ ......+... .+-+.|.| +...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 98864 79999999999999999988753321 0111111110 01112333 34568899999999998
Q ss_pred ceeeEeee
Q 018576 335 SGIRSDLV 342 (353)
Q Consensus 335 ~~v~~~~~ 342 (353)
.......+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 87766543
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.39 E-value=5.3e-12 Score=110.50 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-cEEEeccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG-DAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh 259 (353)
.+..+|||||||+|.++..+++.. .+++++|. +.+++.+++. +++++..+|+... ... |+|++..++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-LGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-cCCcCEEEEcchhh
Confidence 456799999999999999999875 46999998 7777777642 4789999995322 233 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
+++++....+++++.+.+++++. +.... ..+.. ........... ..........+.++|.++++++||++.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLI-FTFAP---YTPLL---ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEE-EEECC---ccHHH---HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 89988888999999997754443 32211 11000 00000000000 0000122345789999999999999998
Q ss_pred EeeeCC
Q 018576 339 SDLVTG 344 (353)
Q Consensus 339 ~~~~~~ 344 (353)
+.+...
T Consensus 212 ~~~~~~ 217 (230)
T PRK07580 212 TERISS 217 (230)
T ss_pred eeeccc
Confidence 877653
No 57
>PLN03075 nicotianamine synthase; Provisional
Probab=99.38 E-value=2.4e-12 Score=114.29 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCchHHHH-H-HHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC--CC-cEEEe
Q 018576 189 ANIKQLVDVGGNLGVTLQ-A-ITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP--KG-DAIFL 254 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~-~-l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p--~~-D~i~~ 254 (353)
.++.+|+|||||.|.++. - +++.+|+.+++++|. +++++.|++. ++++|..+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 367999999999774433 3 335679999999999 7777766542 579999999987332 33 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. +||+|+.++..++|++++++|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999976777899999999999999999854
No 58
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.38 E-value=1.1e-11 Score=114.56 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=85.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCCCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQSVPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~~p~- 248 (353)
-+++.++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.+++. .++++...|.++..+.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 3556666 33346999999999999999999999999999999 5667666531 3689999998875544
Q ss_pred C-cEEEecccccc---CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHD---WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~---~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|+++-.+|. +++....++++.++++|+|||.|+++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 99999877664 445556799999999999999999984
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=9.8e-12 Score=104.21 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC-cEEEeccccccC
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDW 261 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~ 261 (353)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ ..... |+|++.. +|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 68999999999999999999899999999999 566654432 2579999999977 32233 9998876 543
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
...+++.+++.|+|||++++..
T Consensus 121 ----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 ----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 3467888999999999999763
No 60
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=2.5e-11 Score=111.56 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=84.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DAI 252 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~i 252 (353)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. -..+++..|.+...++. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3445454 33346899999999999999999999999999999 6677766542 23567788887655444 999
Q ss_pred EeccccccC---CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILHDW---DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh~~---~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+++..+|.. ......++++++.+.|+|||.|+|+-.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999863 234567999999999999999998765
No 61
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.36 E-value=2.2e-11 Score=107.01 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=102.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHH------HhhCC-CCCCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHV------IEHAP-LHPHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~------~~~a~-~~~rv~~~~~d~~~-~~p~~ 249 (353)
..+...++.+ .+.+|||||||.|.++..++++-|. .++|+|. +.. ++..- ...++.+...-+.+ +....
T Consensus 105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 3455555423 4689999999999999999998553 7999997 221 22222 12334444333333 32233
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++-.||+|..++ ...|+.+++.|+|||.|++-..+.+.+........ ..+--|.. .-...|...+..|
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m~n---v~FiPs~~~L~~w 254 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKMRN---VWFIPSVAALKNW 254 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCCCc---eEEeCCHHHHHHH
Confidence 999999999997664 68999999999999999998887765432211110 00101100 1234689999999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
++++||+.++++..
T Consensus 255 l~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 255 LERAGFKDVRCVDV 268 (315)
T ss_pred HHHcCCceEEEecC
Confidence 99999999998765
No 62
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=1.9e-12 Score=106.78 Aligned_cols=135 Identities=17% Similarity=0.245 Sum_probs=95.5
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCCCCCC--cEEEecc
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQSVPKG--DAIFLKW 256 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~~--D~i~~~~ 256 (353)
.++ -....+++|+|||.|.++..|+.++ -+.+++|. +..++.|++ .++|+++..|+....|.+ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 455 5566899999999999999999986 37899998 777887765 378999999998877765 9999999
Q ss_pred ccccCCc-hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 257 ILHDWDD-EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 257 ~Lh~~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
++|++++ ++...+++++.++|+|||.|++...-.. ...- -|...-.+.+.++|++. |+
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-----------------~c~~---wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-----------------NCRR---WGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-----------------HHHH---TT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-----------------cccc---cCcccchHHHHHHHHHH-hh
Confidence 9999986 5788999999999999999999765210 0000 13334577788888863 44
Q ss_pred eeeEeee
Q 018576 336 GIRSDLV 342 (353)
Q Consensus 336 ~v~~~~~ 342 (353)
.++...+
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 4444443
No 63
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.35 E-value=9e-13 Score=112.40 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=103.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------C----CeeEEeCCCCCCCCCCcEEEeccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------P----HIEHVAGDMFQSVPKGDAIFLKWI 257 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----rv~~~~~d~~~~~p~~D~i~~~~~ 257 (353)
+.+|||||||+|-++..|++. +.+++++|. +.+++.|+++ . |+++...|.....+.-|+|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999997 479999999 7889888765 2 356666666553434599999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc-chhhhhhCCCC-----cccCHHHHHHHHHh
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI-DVLMMTQNPGG-----KERTKHEFMTLATG 331 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-----~~~t~~~~~~ll~~ 331 (353)
++|..|. ..+++.+.+.|+|+|+|+|.+....-... ....++ +..... .|.| +..+.++..+++..
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~-----~~~i~~~E~vl~i-vp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSF-----AGTIFLAEIVLRI-VPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHh-----hccccHHHHHHHh-cCCCCcCHHHcCCHHHHHHHHHh
Confidence 9998654 69999999999999999999875433110 000111 111121 2222 34589999999999
Q ss_pred cCCceeeEee
Q 018576 332 AGFSGIRSDL 341 (353)
Q Consensus 332 aGf~~v~~~~ 341 (353)
+|+++..+..
T Consensus 240 ~~~~v~~v~G 249 (282)
T KOG1270|consen 240 NGAQVNDVVG 249 (282)
T ss_pred cCcchhhhhc
Confidence 9998876643
No 64
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=8.4e-12 Score=109.48 Aligned_cols=145 Identities=18% Similarity=0.094 Sum_probs=97.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-C-CC-CC-cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-S-VP-KG-DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~-~p-~~-D~i~~~~~L 258 (353)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++++...|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45689999999999999988875 468999998 5666665532 356777777755 2 12 23 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh--hC--CCCcccCHHHHHHHHHhcCC
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT--QN--PGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~g~~~t~~~~~~ll~~aGf 334 (353)
++.++. ..+|+++.+.|+|||++++........ ........ ....... .. ......+.++|.++++++||
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVG-AEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCCH--HHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhh-HHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 988754 588999999999999999876431110 00000000 0000000 00 01234578999999999999
Q ss_pred ceeeEee
Q 018576 335 SGIRSDL 341 (353)
Q Consensus 335 ~~v~~~~ 341 (353)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9987754
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.33 E-value=6e-11 Score=101.94 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=97.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------------CCCCeeEEeCCCCC-CCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------------LHPHIEHVAGDMFQ-SVP- 247 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~~p- 247 (353)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. +..+|++.++|+++ +..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 789999999 56666531 12468999999988 321
Q ss_pred -CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHH
Q 018576 248 -KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEF 325 (353)
Q Consensus 248 -~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 325 (353)
.. |.|+-..++|+++.+.....++.+.++|+|||++++.....++.... . -....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 22 99999999999998888899999999999999988877654321100 0 0123678889
Q ss_pred HHHHHhcCCceeeEe
Q 018576 326 MTLATGAGFSGIRSD 340 (353)
Q Consensus 326 ~~ll~~aGf~~v~~~ 340 (353)
.++|.. +|.+....
T Consensus 173 ~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 173 EALYGG-HYEIELLE 186 (213)
T ss_pred HHHhcC-CceEEEEe
Confidence 998863 55554443
No 66
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=5.8e-12 Score=105.19 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=96.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCC-CCCCC-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~-D 250 (353)
..+...++ .-++.++||+|||.|..+..|+++ +..++++|. +..++.+++ .-.|+....|+.+ .+++. |
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 34555566 556789999999999999999998 789999998 445554432 2348899999987 66666 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++..+++++..+...++++++.+.++|||++++...+..++...+ .. ....+...|+.+.++
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~~--------~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------SP--------FPFLLKPGELREYYA 160 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S--B-TTHHHHHTT
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------CC--------CCcccCHHHHHHHhC
Confidence 99999999999988899999999999999999998766432221000 00 112345667888774
Q ss_pred hcCCceeeE
Q 018576 331 GAGFSGIRS 339 (353)
Q Consensus 331 ~aGf~~v~~ 339 (353)
||++++.
T Consensus 161 --dW~il~y 167 (192)
T PF03848_consen 161 --DWEILKY 167 (192)
T ss_dssp --TSEEEEE
T ss_pred --CCeEEEE
Confidence 6887654
No 67
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=1.1e-11 Score=112.44 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCCCCCCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQSVPKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~~~p~~-D~i~~~~ 256 (353)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++|...|+.. ++.. |+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcC
Confidence 4579999999999999999986 578999999 7788766543 246788888753 3333 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC------CcccCHHHHHHHHH
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG------GKERTKHEFMTLAT 330 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~t~~~~~~ll~ 330 (353)
+|||++++....+++.+.+ +.+| .++|.. .+... ....+... ...+++ ....+.++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~--~p~~~-------~~~~l~~~-g~~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEK-RLIISF--APKTL-------YYDILKRI-GELFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCC-EEEEEe--CCcch-------HHHHHHHH-HhhcCCCCcCceeeeCCHHHHHHHHH
Confidence 9999988777778888875 4554 444432 12110 00000000 000111 12347999999999
Q ss_pred hcCCceeeEeeeC
Q 018576 331 GAGFSGIRSDLVT 343 (353)
Q Consensus 331 ~aGf~~v~~~~~~ 343 (353)
++||++.+..-..
T Consensus 289 ~AGf~v~~~~~~~ 301 (315)
T PLN02585 289 KAGWKVARREMTA 301 (315)
T ss_pred HCCCEEEEEEEee
Confidence 9999987655443
No 68
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.31 E-value=1.9e-11 Score=102.70 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++. ++++++.+|+.+ +..+. |+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 478999999999999999999999999999999 6777766542 459999999877 33223 99998752
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.....+++.+++.|+|||++++.+
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 124689999999999999999875
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=4.6e-11 Score=93.79 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=78.3
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCC---CCCC-
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQS---VPKG- 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~~- 249 (353)
++..+. .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|.... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444444 55567999999999999999999999999999998 666766543 25788888887641 2233
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++....+ ...++++++++.|+|||++++.-
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999876543 24589999999999999998753
No 70
>PTZ00146 fibrillarin; Provisional
Probab=99.27 E-value=3.4e-10 Score=100.29 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecch-H----HHhhCCCCCCeeEEeCCCCCCC-----CCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQP-H----VIEHAPLHPHIEHVAGDMFQSV-----PKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~----~~~~a~~~~rv~~~~~d~~~~~-----p~~-D~i~~~ 255 (353)
+.+..+|||+|||+|.++..+++.. +.-+++.+|+. . +++.++.+++|.++..|+..+. .+. |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999987 45689999983 2 6677766688999999986532 123 999887
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
... + ++...++.++++.|||||+++|....... +. .+....+-.++. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~i--------------d~-----g~~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCI--------------DS-----TAKPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEecccc--------------cc-----CCCHHHHHHHHH-HHHHHcCCc
Confidence 642 2 23456778999999999999994221111 00 001111112344 889999999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
.++++.+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 98887765
No 71
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.27 E-value=1.4e-11 Score=102.57 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~ 260 (353)
...+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++. ..++++..|.++..+. . |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 578999999999999999999999999999998 6677766542 3389999999986663 3 99999988886
Q ss_pred CCc---hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDD---EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~---~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-.+ +-..++++.+.+.|+|||.++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 2467999999999999999987554
No 72
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.27 E-value=6.9e-11 Score=104.82 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~ 260 (353)
+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.++++.. |+|+++-..+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446999999999999999999999999999998 7777766542 46999999998765543 99998643332
Q ss_pred ------CCchH------------------HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 261 ------WDDEH------------------CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 261 ------~~~~~------------------~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
+.... ...+++++.+.|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 22111 24789999999999999887320
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....+++.++|+++||+.+++...
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeC
Confidence 012457889999999998877654
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.27 E-value=1.7e-10 Score=99.46 Aligned_cols=133 Identities=13% Similarity=0.092 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------------CCCCeeEEeCCCCCCCCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------------LHPHIEHVAGDMFQSVPK 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~~~p~ 248 (353)
..+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++.++|+++..+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345679999999999999999985 789999999 55566431 125689999999983222
Q ss_pred ---C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 249 ---G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 249 ---~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
. |+|+-.-++|+++.+...++++.+.++|+|||+++++....++.... . .....+.++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHH
Confidence 2 99999999999998888999999999999999876665554332100 0 012367899
Q ss_pred HHHHHHhcCCceeeEee
Q 018576 325 FMTLATGAGFSGIRSDL 341 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~ 341 (353)
+.+++.. +|.+.....
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9998863 366554443
No 74
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.27 E-value=1.6e-11 Score=105.04 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCC-CC-C--CCCC--cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDM-FQ-S--VPKG--DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~-~~-~--~p~~--D~i~~~~ 256 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +++++.+++ ..++.++.+|+ .. + ++.+ |+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 777776654 25799999998 43 3 4443 9999876
Q ss_pred ccccCC------chHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHDWD------DEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~~~------~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..+... ......+|++++++|+|||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543211 1113689999999999999999865
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.26 E-value=2.2e-11 Score=106.14 Aligned_cols=142 Identities=17% Similarity=0.117 Sum_probs=97.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCC--CC-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVP--KG-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p--~~-D~i~~~~~L 258 (353)
.+.+|||+|||+|.++..+++.. .+++++|. +.+++.+++. .++++...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999988864 46999998 6666665542 258888888765 322 33 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhh-hhCC-----CCcccCHHHHHHHHHhc
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMM-TQNP-----GGKERTKHEFMTLATGA 332 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~~~t~~~~~~ll~~a 332 (353)
|+..+. ..+|+++++.|+|||.+++.....+.. . .........+. ...+ .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998654 589999999999999999876532110 0 00000000000 0000 11234788999999999
Q ss_pred CCceeeEee
Q 018576 333 GFSGIRSDL 341 (353)
Q Consensus 333 Gf~~v~~~~ 341 (353)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999987753
No 76
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.24 E-value=1.6e-10 Score=99.30 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=80.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC---------CCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS---------VPK 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p~ 248 (353)
.++.+.+.-+.++.+|||||||+|.++..+++.. +..+++++|+.++. ..+++.++++|+.++ .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3455555423567899999999999999999987 45799999995532 235799999999872 333
Q ss_pred C--cEEEeccccccCCchH---------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G--DAIFLKWILHDWDDEH---------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~---------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ |+|++..+.|...... ...+|+.++++|+|||.+++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 9999987776544321 24689999999999999999654
No 77
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.22 E-value=3.4e-11 Score=101.17 Aligned_cols=137 Identities=19% Similarity=0.323 Sum_probs=95.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCC-eeEEeCCCCCCCCC--C-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPH-IEHVAGDMFQSVPK--G-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~r-v~~~~~d~~~~~p~--~-D~i~~~~~Lh 259 (353)
...+.||.|+|.|..+..++..+ --++-.+|. +..++.|++ ..+ .++.+.-+.+-.|+ . |+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999886644 236777776 666776662 234 34555544442343 3 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
|++|++..++|++++++|+|+|.++|-|.+..... ..+|-. .+.-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDEE-----DSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEETT-----TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCCc-----cCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876431 122211 1345689999999999999999876
Q ss_pred ee
Q 018576 340 DL 341 (353)
Q Consensus 340 ~~ 341 (353)
..
T Consensus 200 ~~ 201 (218)
T PF05891_consen 200 EK 201 (218)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 78
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.21 E-value=2.5e-11 Score=99.84 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=85.6
Q ss_pred EEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 218 INFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 218 ~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
+++|. ++|++.|+++ .+++++.+|+.+ +++.+ |+|++.+++|++++ ..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence 47888 7888877432 369999999988 77664 99999999999875 4699999999999999999
Q ss_pred EEeeecCCCCCCccccccccc-cchhhhhhCCC-----------CcccCHHHHHHHHHhcCCceeeEeeeCCc
Q 018576 285 VVELMLPEVPNTSIESKSNSH-IDVLMMTQNPG-----------GKERTKHEFMTLATGAGFSGIRSDLVTGN 345 (353)
Q Consensus 285 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------g~~~t~~~~~~ll~~aGf~~v~~~~~~~~ 345 (353)
|.|...++..-......+... .-......... ....+.+++.++|+++||+.++......+
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 999876542110000000000 00000000000 12358899999999999999988777644
No 79
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=4.8e-10 Score=100.85 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=96.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~L 258 (353)
..+..+|||+|||+|..+..++..+|..+++++|. +.+++.+++. .++.++.+|++++.+. . |+|+++...
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 44567999999999999999999999999999998 6666665532 5799999999876553 3 999885322
Q ss_pred cc------CCc------------------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC
Q 018576 259 HD------WDD------------------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN 314 (353)
Q Consensus 259 h~------~~~------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (353)
.. +.. +...++++++.+.|+|||++++ +..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC-------------------------
Confidence 11 111 1235789999999999999987 210
Q ss_pred CCCcccCHHHHHHHHHhcCCceeeEee-eCCceEEEEEe
Q 018576 315 PGGKERTKHEFMTLATGAGFSGIRSDL-VTGNFWVMEFY 352 (353)
Q Consensus 315 ~~g~~~t~~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~ 352 (353)
. ...+++.+++++.||+.+++.. ..+...++.++
T Consensus 240 --~--~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 --Y--DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred --c--hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0 1134688999999998777643 33444444443
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.20 E-value=4.1e-11 Score=101.89 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-C---CCCC--cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-S---VPKG--DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~---~p~~--D~i~~~~ 256 (353)
...+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|+.+ + .+.+ |.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 667766643 2579999999975 2 4443 8888776
Q ss_pred ccccCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 257 ILHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
..+ |+... ...++++++++|+|||.|++...
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 543 22211 14789999999999999988664
No 81
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.20 E-value=7.5e-11 Score=105.77 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC---CeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY---IKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
...+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++. +++.+..+|..+ +++.+ |+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 4578999999999999999998874 37899999 7788877654 779999999887 77654 999876431
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
..+++++++|+|||+++++.+
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeC
Confidence 236789999999999999764
No 82
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.19 E-value=2.4e-10 Score=97.28 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEEEeccccccCCc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i~~~~~Lh~~~~ 263 (353)
+..+|||||||+|.++..+++.. ..+++++|. +++++.+++ .+++++.+|+.+ +++.. |+|+++.+||++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 45799999999999998887753 567899998 677777654 358888888865 24433 99999999999876
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-ccc-c-ccc--cccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT-SIE-S-KSN--SHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~-~-~~~--~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
..++|+++.+.+++ +++.-+........ ... . ... ..+...... .+.....+.+++.++++++||++++
T Consensus 91 --~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 91 --PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred --HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCCCEEEE
Confidence 45789988877553 33332111000000 000 0 000 000000000 0123456899999999999999988
Q ss_pred Eeee
Q 018576 339 SDLV 342 (353)
Q Consensus 339 ~~~~ 342 (353)
....
T Consensus 165 ~~~~ 168 (194)
T TIGR02081 165 RAAF 168 (194)
T ss_pred EEEe
Confidence 7665
No 83
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1e-09 Score=96.74 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=86.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D 250 (353)
+-+++.++ .....+|||+|||.|..++.+++.+|+.+++.+|. ...++.++++ .+..+...|.+++..+. |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 45677777 55455999999999999999999999999999999 4557777653 23356777887765555 9
Q ss_pred EEEeccccccCC---chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 251 AIFLKWILHDWD---DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 251 ~i~~~~~Lh~~~---~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.|+++--+|.-- ..-..++++...++|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999999732 22234899999999999999999765
No 84
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.17 E-value=6.2e-10 Score=92.64 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=100.3
Q ss_pred hhcccCchHHHHHHHHHHh----chhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhC
Q 018576 154 EYGRVDPRFNKHFNTAMYN----HTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHA 229 (353)
Q Consensus 154 ~~~~~~~~~~~~~~~~m~~----~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 229 (353)
+.+.++|+....|+.+.+. +-.-.+..+++.+...+....|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC----
Confidence 3455666666666555543 33345666777666445568999999999998865532 357888887221
Q ss_pred CCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc
Q 018576 230 PLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306 (353)
Q Consensus 230 ~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (353)
+-..+..|+.. |++.+ |++++...|-. .+...+|+++.|.|||||.|.|.|....
T Consensus 105 ----n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 ----NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp ----STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred ----CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 22467788877 88766 99999988865 4478999999999999999999997421
Q ss_pred chhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 307 DVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 307 ~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+ -..+++.+.++..||+..........+-+.+++|
T Consensus 163 -------f-----~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 -------F-----ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred -------C-----cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 1 1356788899999999988766667777777764
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.17 E-value=1.1e-09 Score=92.66 Aligned_cols=123 Identities=16% Similarity=0.238 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CC-eeEEeCCCCCCCCC-C-cEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PH-IEHVAGDMFQSVPK-G-DAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~r-v~~~~~d~~~~~p~-~-D~i~~~~~ 257 (353)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. ++ +.++.+|+.++++. . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 679999999 6777766432 22 88999998875554 3 99988755
Q ss_pred cccCC-------------------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 258 LHDWD-------------------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 258 Lh~~~-------------------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
++... ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43211 1224578999999999999988754210
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
...+++.+++.++||++..+...
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeec
Confidence 12356788999999988766443
No 86
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.16 E-value=7.6e-10 Score=90.74 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=81.4
Q ss_pred HHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCC---CCCCcE
Q 018576 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQS---VPKGDA 251 (353)
Q Consensus 182 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~~D~ 251 (353)
+..+. +.++.+++|||||||..+.+++...|..+++.+|. ++.++..++ .++++.+.+|..+. .|..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 44555 77889999999999999999999899999999998 556554443 28899999998773 333499
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
||+...- . ...+|..+...|+|||+|++.-..
T Consensus 106 iFIGGg~-~-----i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG-N-----IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC-C-----HHHHHHHHHHHcCcCCeEEEEeec
Confidence 9999773 2 468899999999999999985543
No 87
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=2.5e-10 Score=97.94 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=76.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC--
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-- 248 (353)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +++++.++++ .+++++.+|..+.++.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 4455554 56678999999999999999998874 568999999 6777766542 3589999999874432
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|++..++++++ +++.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 3 9999998887654 35778999999998754
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.13 E-value=1.1e-09 Score=96.93 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCCcEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKGDAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~~~~~Lh~ 260 (353)
.++.+|||||||+|.++..+++..+ .+++++|. +.+++.++++ .++.+..+|. ..|+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4578999999999999988776543 47999999 7778777653 2233333221 2299887633
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
.+....+++++.++|+|||++++..... ...+++.+.+++.||+.+++.
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 2335688999999999999999875421 124567889999999999888
Q ss_pred eeCCceEEEEE
Q 018576 341 LVTGNFWVMEF 351 (353)
Q Consensus 341 ~~~~~~~vi~~ 351 (353)
..+...+++--
T Consensus 238 ~~~~W~~~~~~ 248 (250)
T PRK00517 238 ERGEWVALVGK 248 (250)
T ss_pred EeCCEEEEEEE
Confidence 87766666543
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.12 E-value=1.5e-09 Score=97.59 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccc--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWI-- 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~-- 257 (353)
++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|++++++. . |+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 7777776642 4799999999876654 3 99998621
Q ss_pred -----------cccCCc----------hHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 -----------LHDWDD----------EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 -----------Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++.+. .....+++++.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111 1236889999999999999875
No 90
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.11 E-value=4.5e-09 Score=91.60 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCC------CCC-eeEEeCCCCCC--C----CCCcEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPL------HPH-IEHVAGDMFQS--V----PKGDAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~r-v~~~~~d~~~~--~----p~~D~i 252 (353)
..+.+||||.||+|.+....+..+|. .++.+.|. +..++..++ ... ++|.++|.++. + |.-+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 78899998 555665543 244 49999999972 2 223999
Q ss_pred EeccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC-----CcccCHHHHH
Q 018576 253 FLKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG-----GKERTKHEFM 326 (353)
Q Consensus 253 ~~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~t~~~~~ 326 (353)
+.+..+..++|.+ +...|+.+.+++.|||+|+....-..+.. + ........ +.+ -+.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-----e----~IAr~Lts-Hr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-----E----MIARVLTS-HRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-----H----HHHHHHhc-ccCCCceEEEecCHHHHH
Confidence 9999999999877 55689999999999999997654332211 0 01111111 112 2468999999
Q ss_pred HHHHhcCCceeeEeeeC-CceEEEEEe
Q 018576 327 TLATGAGFSGIRSDLVT-GNFWVMEFY 352 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~~-~~~~vi~~~ 352 (353)
+|+++|||+.++..--. +-++|..+.
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeec
Confidence 99999999976654333 334554443
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.11 E-value=6e-10 Score=96.01 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=77.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~ 248 (353)
...++..+. ..++.+|||||||+|..+..+++.. ++.+++++|. +++++.++++ .+++++.+|.....+ .
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 344555565 6778999999999999999999876 4579999998 7788777652 579999999887433 3
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ |+|++....+.+ .+.+.+.|+|||+|++..
T Consensus 144 ~~fD~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 3 999998776543 235667899999998854
No 92
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=1.4e-09 Score=89.69 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEEEeccccccCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAIFLKWILHDWD 262 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i~~~~~Lh~~~ 262 (353)
+++.||||+|||.|.++..|.+. .++++.|+++ ++.+..+.+ ..+..+++|+.+ .+|+. |.|+++.+|....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 56799999999999999888885 5889999998 444444433 368899999987 35654 9999999999975
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecCCC---------CCCccccc-cccccchhhhhhCCCCcccCHHHHHHHHHhc
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLPEV---------PNTSIESK-SNSHIDVLMMTQNPGGKERTKHEFMTLATGA 332 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 332 (353)
. ..++|+++.|+ |...+|.-+-...= ...+.... ...|.+ +||=...|..+++++.++.
T Consensus 90 ~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 R--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred H--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence 5 45888887665 55666554321100 00010000 011111 3455667999999999999
Q ss_pred CCceeeEeeeCC
Q 018576 333 GFSGIRSDLVTG 344 (353)
Q Consensus 333 Gf~~v~~~~~~~ 344 (353)
|+++++...+..
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999998877653
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.10 E-value=1.1e-09 Score=96.09 Aligned_cols=123 Identities=10% Similarity=0.093 Sum_probs=91.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCCCC-CCC-cEEEeccccccCCchHH
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQSV-PKG-DAIFLKWILHDWDDEHC 266 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~-p~~-D~i~~~~~Lh~~~~~~~ 266 (353)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++. ++++++.+|+.+.. ... |+|+++-.+++.+..+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46999999999999999999887789999999 7888877764 67999999998733 333 99999888877554322
Q ss_pred ------------------HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 267 ------------------LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 267 ------------------~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
.++++.+...|+|+|.+.+.=...+ . -....+.++|+.+
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-------------~----------y~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-------------Y----------YDGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-------------c----------ccccCCHHHHHHH
Confidence 3566777778888886666511100 0 0112468899999
Q ss_pred HHhcCCce
Q 018576 329 ATGAGFSG 336 (353)
Q Consensus 329 l~~aGf~~ 336 (353)
|+++||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 99999964
No 94
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.09 E-value=6.4e-10 Score=102.59 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=81.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---CCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---SVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~ 249 (353)
.+.+.+. ......+||||||+|.++..+++.+|+..++|+|+ +.+++.+.+ ..++.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3455454 33456999999999999999999999999999998 666655533 2679999999853 45554
Q ss_pred --cEEEeccccccCCchH-----HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 --DAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|.|++.+... |+... ...+|+.++++|+|||.+.+..-.
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 9998765432 33221 148999999999999999996643
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.08 E-value=1.8e-09 Score=92.22 Aligned_cols=97 Identities=13% Similarity=0.232 Sum_probs=75.1
Q ss_pred HhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CCCC-
Q 018576 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VPKG- 249 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p~~- 249 (353)
..+. .....+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+. .+..
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 4444 6677899999999999999998875 6679999999 7777765431 5788999998652 2223
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
|+|++... ......+++.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99988542 23456899999999999999986
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.08 E-value=1.1e-09 Score=93.44 Aligned_cols=101 Identities=12% Similarity=0.229 Sum_probs=77.3
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---CCC-C
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---VPK-G 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~p~-~ 249 (353)
+...+. ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.++++ ++++++.+|+.+. ... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 445554 56678999999999999999998889899999999 7787766542 5789999988642 222 2
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.+++.. .....++++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 12356899999999999999998764
No 97
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.07 E-value=1e-09 Score=94.88 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=76.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K- 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~- 248 (353)
..++..+. ..++.+|||||||+|.++..+++..+ +.+++++|. +++++.++++ ++++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66788999999999999999999875 578999998 7778776542 579999999977333 2
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|++....+.. ...+.+.|+|||++++.-
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 3 999988665443 445778999999998853
No 98
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=2.6e-09 Score=92.27 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=97.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C--CCCC--cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S--VPKG--DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~--~p~~--D~i~~ 254 (353)
.....+|||+|||+|..++.++++++.++++++++ +.+.+.|++. +|+++++.|+.. . .+.+ |+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44578999999999999999999999999999999 6677766652 789999999976 2 2223 99999
Q ss_pred ccccccCCch----------------HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 255 KWILHDWDDE----------------HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 255 ~~~Lh~~~~~----------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
+--.+.-.+. ...++++.+.+.|||||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------------------
Confidence 9777665433 2468899999999999999987642
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....+|.+++...+|...++..+
T Consensus 173 -erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 173 -ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred -HHHHHHHHHHHhcCCCceEEEEe
Confidence 01346778888888887776554
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.06 E-value=4.9e-09 Score=97.38 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCC-C-C-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVP-K-G-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p-~-~-D~i~~~~~Lh 259 (353)
+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.++++ .+++++.+|+++ ..+ . . |+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 7788777653 479999999976 333 2 3 9999965321
Q ss_pred cCCc-----------------------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 260 DWDD-----------------------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 260 ~~~~-----------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
.-.+ +..+++++.+.+.|+|||.+++ |...
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 1000 1134778888889999998764 3311
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee-CCceEEEEE
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV-TGNFWVMEF 351 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~-~~~~~vi~~ 351 (353)
.-.+.+.+++++.||..+++... .+...++..
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 01446788899999988776543 344444433
No 100
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.05 E-value=1.5e-09 Score=97.84 Aligned_cols=94 Identities=15% Similarity=0.258 Sum_probs=74.7
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEec------
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLK------ 255 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~------ 255 (353)
.+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ .+++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 6777766542 3599999999886654 3 999986
Q ss_pred -------cccccCCc----------hHHHHHHHHHHHhCCCCCEEEE
Q 018576 256 -------WILHDWDD----------EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 256 -------~~Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.++++-+. .....+++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22332221 1356899999999999998764
No 101
>PRK14967 putative methyltransferase; Provisional
Probab=99.04 E-value=6.6e-09 Score=90.42 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=74.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCC-C-cEEEeccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPK-G-DAIFLKWILH 259 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh 259 (353)
..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .++.++.+|+.+.++. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455679999999999999998876 3458999998 6677655542 3578889998775554 3 9999974332
Q ss_pred cCCc-------------------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 260 DWDD-------------------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 260 ~~~~-------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.-+. .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 114568899999999999999876543
No 102
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.02 E-value=4.5e-09 Score=88.96 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=75.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC---------CCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS---------VPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p~- 248 (353)
++...+....++.+|||+|||+|.++..+++.+ +..+++++|+.+.. ..+++.++.+|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445545677899999999999999999987 66789999995433 335788998898652 233
Q ss_pred C-cEEEecccccc---CCc------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHD---WDD------EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~---~~~------~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|++....|. |.- ....++|+++++.|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3 99998644321 111 123689999999999999999853
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=1.4e-09 Score=98.86 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=74.6
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccc----
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWI---- 257 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~---- 257 (353)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+++.++. . |+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 7778766542 4699999999875554 3 99998621
Q ss_pred ---------cccCCc----------hHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 ---------LHDWDD----------EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 ---------Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++.+. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111 2246889999999999999886
No 104
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.00 E-value=4.4e-09 Score=101.93 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=88.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEecccc--
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWIL-- 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~L-- 258 (353)
..+|||||||+|.++..++..+|+.+++++|. +.+++.++++ +++.++.+|+++..+. . |+|+++--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 6777776642 4799999998875544 3 999985211
Q ss_pred ------------ccCC------c----hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 259 ------------HDWD------D----EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 259 ------------h~~~------~----~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
.+.+ . +...++++++.+.|+|||.+++ |...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 1111 0 1235688899999999999875 4210
Q ss_pred CcccCHHHHHHHHHhcCCceeeEee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
...+.+.+++.+.||..+++..
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEe
Confidence 0144577788888988776654
No 105
>PRK04457 spermidine synthase; Provisional
Probab=99.00 E-value=1.4e-09 Score=96.69 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC---CCCCC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ---SVPKG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p~~-D~i~~~~ 256 (353)
+++.+|||||||+|.++..+++.+|+.+++++|+ +++++.+++ .++++++.+|..+ ..++. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 888887764 2679999999865 23334 9998752
Q ss_pred cccc--CCch-HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHD--WDDE-HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~--~~~~-~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
++. .+.. ....+++++++.|+|||.+++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 1111 12699999999999999999853
No 106
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.98 E-value=7.6e-09 Score=93.44 Aligned_cols=93 Identities=20% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
++.+|||||||+|.++..+++. +..+++++|. +.+++.++++ .++.+...+.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999888764 4568999999 6777776652 34666666533322333 999987543
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+....++.++++.|+|||++++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3356899999999999999998764
No 107
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.97 E-value=1.9e-08 Score=85.76 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=111.1
Q ss_pred hhhcccCchHHHHHHHHHHhchh----hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhh
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTS----LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEH 228 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 228 (353)
+..+..+|.....|+.+.+..-. ..+..+++.+...+....|.|+|||.+..+. .-.-++.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-----ccccceeeeeeec----
Confidence 44556677777777776654322 2455666666634567899999999998765 1123677778722
Q ss_pred CCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccc
Q 018576 229 APLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305 (353)
Q Consensus 229 a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~ 305 (353)
.+-+++..|+.. |+++. |++++...|.. .+...++++++|+|+|||.+.|.|.... .
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------f 269 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------F 269 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh-------------c
Confidence 234677888888 77654 99988887754 4467999999999999999999986321 1
Q ss_pred cchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 306 ~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
-+...+.+.|...||...+.......+.+.++.|
T Consensus 270 --------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 270 --------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred --------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 1233477889999999887766666777776654
No 108
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.97 E-value=2.2e-09 Score=89.87 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=99.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCee-EEeC---CCCCC-CCCC-cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIE-HVAG---DMFQS-VPKG-DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~-~~~~---d~~~~-~p~~-D~ 251 (353)
++++.... .....++||+|||||-.+..|.... -+.+|+|+ ..|+++|.++.-.+ +.+. +|... -++. |+
T Consensus 115 ~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 115 AEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHhcc-CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 34444444 4457899999999999988887653 36789999 67899988763322 1222 23321 2233 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc-ccCHHHHHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK-ERTKHEFMTLAT 330 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~t~~~~~~ll~ 330 (353)
|+...||-++.+ ...++.-+...|+|||.+.++-...+.... +.. .|..+ -.+..-.++.++
T Consensus 192 i~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l-------~ps~RyAH~~~YVr~~l~ 254 (287)
T COG4976 192 IVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVL-------GPSQRYAHSESYVRALLA 254 (287)
T ss_pred hhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCC--------eec-------chhhhhccchHHHHHHHH
Confidence 999999999875 568899999999999999998766655311 111 11111 235667788999
Q ss_pred hcCCceeeEeee
Q 018576 331 GAGFSGIRSDLV 342 (353)
Q Consensus 331 ~aGf~~v~~~~~ 342 (353)
..||+++.+.+.
T Consensus 255 ~~Gl~~i~~~~t 266 (287)
T COG4976 255 ASGLEVIAIEDT 266 (287)
T ss_pred hcCceEEEeecc
Confidence 999999988765
No 109
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.97 E-value=7e-10 Score=86.23 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=75.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-C--CCCC--cEEEeccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-S--VPKG--DAIFLKWI 257 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p~~--D~i~~~~~ 257 (353)
+.+|||+|||+|.++..+++.. ..+++++|+ +..++.++. .++++++.+|+.+ . .+.. |+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3589999999999999999998 789999999 666665543 2679999999987 3 4443 99999877
Q ss_pred cccCCc------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 258 LHDWDD------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 258 Lh~~~~------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.+.... +....+++++.+.|+|||.++++-+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 764321 1246889999999999999998753
No 110
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=4.8e-09 Score=78.73 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=74.5
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------CCCCeeEEeCCCCCCC---CCC-cEEEeccccccC
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------LHPHIEHVAGDMFQSV---PKG-DAIFLKWILHDW 261 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~~---p~~-D~i~~~~~Lh~~ 261 (353)
+|+|+|||+|.++..+++ .+..+++++|. +..+..++ ...++.+...|+.+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999998 45554443 2367899999998732 233 999999999875
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 355789999999999999999876
No 111
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.97 E-value=2e-09 Score=90.92 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCchH----HHHHHHHH---CC--CCeEEEecc-hHHHhhCCCC--------------------------
Q 018576 189 ANIKQLVDVGGNLGV----TLQAITSK---YP--YIKGINFDQ-PHVIEHAPLH-------------------------- 232 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~----~~~~l~~~---~p--~~~~~~~D~-~~~~~~a~~~-------------------------- 232 (353)
.+..+|+..||+||. +++.+.+. .. +.++++.|+ +.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 357899999999995 33333341 12 467899998 6778777541
Q ss_pred --------CCeeEEeCCCCC-CCCC-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 233 --------PHIEHVAGDMFQ-SVPK-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 233 --------~rv~~~~~d~~~-~~p~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+|+|..+|..+ +.+. . |+|+|++||-+++++...+++++++++|+|||+|++-.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 369999999998 3333 3 99999999999999989999999999999999999854
No 112
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.94 E-value=1.2e-08 Score=90.98 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCchH----HHHHHHHHCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 018576 190 NIKQLVDVGGNLGV----TLQAITSKYP----YIKGINFDQ-PHVIEHAPLH---------------------------- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 232 (353)
+..+|+..||+||. .++.+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35899999999995 3334444332 467999998 6677665431
Q ss_pred ---------CCeeEEeCCCCC-CCC--CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 233 ---------PHIEHVAGDMFQ-SVP--KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 233 ---------~rv~~~~~d~~~-~~p--~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+|+|..+|..+ ++| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999988 554 34 99999999999998889999999999999999988744
No 113
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.94 E-value=1.5e-08 Score=93.39 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=74.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
+.++.+|||+|||+|.++.+.+.. +.+++++|. +.+++.++.+ +.+++..+|+.+ +.+.. |+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999999886653 678999999 6777765532 447899999987 55443 99998632
Q ss_pred ccc-------CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 258 LHD-------WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 258 Lh~-------~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
... ...+...++|+++++.|+|||++++.-+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 211 1113357899999999999999998653
No 114
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.90 E-value=3e-08 Score=85.36 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=83.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------------------CCCeeEEeCCCCC-CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------------------HPHIEHVAGDMFQ-SV- 246 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~d~~~-~~- 246 (353)
..+..+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..++++.++|+++ +.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 345679999999999999999997 678999999 555665311 2479999999998 32
Q ss_pred C---CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 247 P---KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 247 p---~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+ .. |+|+=..+|+.++++...+..+.+.+.|+|||.++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2 12 99999999999999989999999999999999999987643
No 115
>PRK00811 spermidine synthase; Provisional
Probab=98.88 E-value=7.3e-09 Score=93.18 Aligned_cols=98 Identities=24% Similarity=0.302 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCC--CC-C-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSV--PK-G-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~--p~-~-D~i 252 (353)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|...-+ +. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999999997655568999999 777777654 368999999987622 22 3 999
Q ss_pred EeccccccCCchH--HHHHHHHHHHhCCCCCEEEEE
Q 018576 253 FLKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 253 ~~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~ 286 (353)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433222211 258899999999999998874
No 116
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.88 E-value=1.8e-08 Score=89.01 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCCCCC----CC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQSVP----KG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p----~~-D~i~~~~~Lh~ 260 (353)
...+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .+++++.+|+++..+ .. |+|+++--...
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999999 7788777653 346889999876433 23 99998743221
Q ss_pred ------CCch------------------HHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 ------WDDE------------------HCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ------~~~~------------------~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.+++ -..++++.+.+.|+|||++++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1110 1347888889999999999864
No 117
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.88 E-value=1.6e-08 Score=87.35 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=73.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C--
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-- 249 (353)
.++..+. ..+..+|||||||+|.++..+++... +++++|. +.+++.++++ .++.++.+|..+.++. +
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 3444454 66778999999999999988777653 7999998 6677666542 4689999998774442 3
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776543 3456789999999998654
No 118
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.86 E-value=1.2e-07 Score=83.52 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCchH----HHHHHHHHCC-----CCeEEEecc-hHHHhhCCCC---------------------------
Q 018576 190 NIKQLVDVGGNLGV----TLQAITSKYP-----YIKGINFDQ-PHVIEHAPLH--------------------------- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 232 (353)
+..+|.-.||+||. .++.+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999994 5666667776 478899998 6677777541
Q ss_pred --------CCeeEEeCCCCC-C-CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 233 --------PHIEHVAGDMFQ-S-VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 233 --------~rv~~~~~d~~~-~-~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..|.|..+|..+ + .+.. |+|+|.+||-+++.+.-.+++++.+..|+|||+|++=.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248999999988 4 4444 99999999999998888899999999999999999843
No 119
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=85.79 Aligned_cols=105 Identities=21% Similarity=0.353 Sum_probs=76.2
Q ss_pred HHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC-------------------------
Q 018576 181 ILESYK-GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP------------------------- 233 (353)
Q Consensus 181 ~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~------------------------- 233 (353)
.++.++ .+-.+..+|||||..|.++..+++.|....++|+|+ +..|..|+++-
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 344444 255788999999999999999999998889999999 66678776630
Q ss_pred ----------------CeeEEe-------CCCCC-CCCCCcEEEec----cccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 234 ----------------HIEHVA-------GDMFQ-SVPKGDAIFLK----WILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 234 ----------------rv~~~~-------~d~~~-~~p~~D~i~~~----~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
++.|.. -||.. ..|+-|+|+|- ++--+|.|+-...+|+++++.|.|||+|++
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111111 12322 12233888554 454568899999999999999999999886
No 120
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.85 E-value=4.3e-08 Score=84.44 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=97.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC---C---------------CCCeeEEeCCCCC-CCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP---L---------------HPHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~rv~~~~~d~~~-~~p 247 (353)
.....+||..|||.|.-+..|+++ +.+++|+|+ +..++.+. . ..+|++.++|+|+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 556789999999999999999997 679999999 55666541 1 1468999999998 322
Q ss_pred C--C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 248 K--G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 248 ~--~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
. . |+|+=.-+|+.++.+...+..+.+.+.|+|||.++++....+.... .......+.++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~------------------~GPPf~v~~~e 174 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM------------------EGPPFSVTEEE 174 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS------------------SSSS----HHH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC------------------CCcCCCCCHHH
Confidence 2 2 9999999999999999999999999999999996666554433210 00111246889
Q ss_pred HHHHHHhcCCceeeEee
Q 018576 325 FMTLATGAGFSGIRSDL 341 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~ 341 (353)
+.++|. .+|++.....
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 999998 7888766543
No 121
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.84 E-value=8.3e-09 Score=89.94 Aligned_cols=141 Identities=18% Similarity=0.318 Sum_probs=84.9
Q ss_pred CCCeEEEEcCC--chHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC----CCC--eeEEeCCCCCC---CC--C--C---
Q 018576 190 NIKQLVDVGGN--LGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL----HPH--IEHVAGDMFQS---VP--K--G--- 249 (353)
Q Consensus 190 ~~~~vLDvG~G--~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~r--v~~~~~d~~~~---~p--~--~--- 249 (353)
+..++|||||| |-....+++++ .|+.+++-+|. |-++..++. .++ ..++.+|+.++ +. + +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999 44567777765 59999999999 777777764 245 88999999873 22 1 1
Q ss_pred ----cEEEeccccccCCc-hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 250 ----DAIFLKWILHDWDD-EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 250 ----D~i~~~~~Lh~~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
=.+++..+||+++| ++...+++.++++|.||++|+|...+.+..+.. ........... ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-----~~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-----AEALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-----HHHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-----HHHHHHHHHcC-CCCceecCHHH
Confidence 37899999999987 678899999999999999999999876432111 01111111111 22467899999
Q ss_pred HHHHHHhcCCceee
Q 018576 325 FMTLATGAGFSGIR 338 (353)
Q Consensus 325 ~~~ll~~aGf~~v~ 338 (353)
+.++|. ||+.++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999996 888653
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.5e-07 Score=84.28 Aligned_cols=121 Identities=19% Similarity=0.205 Sum_probs=87.6
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEeccc--ccc--
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFLKWI--LHD-- 260 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~~~~--Lh~-- 260 (353)
+|||||||+|..++.++..+|+++++++|+ +..++.|+++ .++.++.+|.+++.+.. |+|+++-- =..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 7777766542 45677777988866655 88888732 111
Q ss_pred -CC------------------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccC
Q 018576 261 -WD------------------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERT 321 (353)
Q Consensus 261 -~~------------------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 321 (353)
.. -+-..+++..+.+.|+|||.+++ |... + .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-------------------------~----q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-------------------------T----Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-------------------------C----c
Confidence 00 01356788889999999777765 3211 1 1
Q ss_pred HHHHHHHHHhcC-CceeeEeeeC
Q 018576 322 KHEFMTLATGAG-FSGIRSDLVT 343 (353)
Q Consensus 322 ~~~~~~ll~~aG-f~~v~~~~~~ 343 (353)
.+...+++.+.| |..+......
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~ 265 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDL 265 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecC
Confidence 456788999999 6666665543
No 123
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.81 E-value=2.6e-08 Score=80.52 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=88.4
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------C-CCeeEEeCCCCCC-C-CCC-cEEEecccccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------H-PHIEHVAGDMFQS-V-PKG-DAIFLKWILHD 260 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~~-~-p~~-D~i~~~~~Lh~ 260 (353)
.+|||+|||.|.++..|++.-=.-+.+|+|. +..++.|+. . +.|+|.+.|+.+| + +.. |+|+=..++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998643345788897 555555432 1 3499999999984 2 222 77766655544
Q ss_pred CC------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 261 WD------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 261 ~~------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
++ .......+..+.+.|+|||.++|.-. -.|.+|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCCe
Confidence 32 22224567888889999999998432 1468889999999999
Q ss_pred ceeeEeeeC
Q 018576 335 SGIRSDLVT 343 (353)
Q Consensus 335 ~~v~~~~~~ 343 (353)
.....+|.+
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 988887765
No 124
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.1e-07 Score=84.61 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCee----EEeCCCCCCCCC---CcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIE----HVAGDMFQSVPK---GDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~----~~~~d~~~~~p~---~D~i~~~~~ 257 (353)
.++.+|||||||+|-+++..++.- ..+++++|+ |..++.++.+ .+|. ....+..+ .+. .|+|+++=
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-~~~~~~~DvIVANI- 237 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-VPENGPFDVIVANI- 237 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-hcccCcccEEEehh-
Confidence 477999999999999999988853 457999999 6677776653 3343 22223222 222 29988764
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
| .+-...+...+++.++|||++++.-.... -.+...+.+.++||.++
T Consensus 238 L----A~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 238 L----AEVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVV 284 (300)
T ss_pred h----HHHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEe
Confidence 3 23467999999999999999998764321 14456788888999998
Q ss_pred eEeeeCCceE
Q 018576 338 RSDLVTGNFW 347 (353)
Q Consensus 338 ~~~~~~~~~~ 347 (353)
++..-....+
T Consensus 285 ~~~~~~eW~~ 294 (300)
T COG2264 285 EVLEREEWVA 294 (300)
T ss_pred EEEecCCEEE
Confidence 8876644433
No 125
>PRK01581 speE spermidine synthase; Validated
Probab=98.80 E-value=2.4e-08 Score=90.95 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------------CCCeeEEeCCCCCCC---CCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------------HPHIEHVAGDMFQSV---PKG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~---p~~- 249 (353)
..++.+||+||||+|..+..+++..+..+++++|+ +++++.|++ .+|++++.+|..+.+ ++.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35678999999999999999998655678999999 778887774 268999999988622 223
Q ss_pred cEEEeccccc---cCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 DAIFLKWILH---DWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 D~i~~~~~Lh---~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...-. ....-....+++.+++.|+|||.+++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999874211 0111223579999999999999998863
No 126
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.79 E-value=3.2e-08 Score=88.73 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC--cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG--DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~--D~i~~~~~L 258 (353)
.++.+|||||||||-+++..++.. ..+++++|. |..++.++++ +++... . ....+.. |+|+++-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANIL- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES--
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCC-
Confidence 355799999999999999888863 458999998 6677766653 445442 1 1223323 99887633
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
.+-...++..+.+.|+|||+|++.-....+ .+++.+.+++ ||+.++
T Consensus 235 ----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 235 ----ADVLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHHHHT-TEEEEE
T ss_pred ----HHHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHHHHC-CCEEEE
Confidence 244678889999999999999997654211 3466777877 999998
Q ss_pred EeeeCCceEEEEEe
Q 018576 339 SDLVTGNFWVMEFY 352 (353)
Q Consensus 339 ~~~~~~~~~vi~~~ 352 (353)
....+...+++--+
T Consensus 281 ~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 281 EREEGEWVALVFKK 294 (295)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 88877666665433
No 127
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.78 E-value=2.4e-08 Score=84.54 Aligned_cols=93 Identities=23% Similarity=0.329 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeC-------CCCCCC--CCC-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAG-------DMFQSV--PKG-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~-------d~~~~~--p~~-D~i~~~~~L 258 (353)
....++|||||+|..++-++..|. ++++.|. +.|++.++++++++.... ++.+-. ++. |+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 344999999999988888877754 6899999 789999999866544332 222211 233 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCC-EEEEEe
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDG-KVIVVE 287 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG-~l~i~e 287 (353)
|.++ ..++.+.++++||+.| .+++..
T Consensus 111 HWFd---le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 111 HWFD---LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred Hhhc---hHHHHHHHHHHcCCCCCEEEEEE
Confidence 9875 3589999999999776 555443
No 128
>PLN02366 spermidine synthase
Probab=98.76 E-value=3.7e-08 Score=89.14 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=73.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC---CCCC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ---SVPK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~-D~ 251 (353)
.+++.+||+||||.|..+.++++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..+. . |+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35678999999999999999987533357899998 667777655 2689999999764 2333 3 99
Q ss_pred EEeccccccCCch--HHHHHHHHHHHhCCCCCEEEEE
Q 018576 252 IFLKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 252 i~~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
|++-..-+..+.. -...+++.++++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9885443322211 1357899999999999999764
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=3.6e-08 Score=89.77 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=74.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCCCCC--C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQSVPK--G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~--~ 249 (353)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|. +++++.+++ .+++.++.+|..+..+. .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4445454 566789999999999999999998864 57999998 777766654 25789999998763332 2
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 999988665443 334677999999998854
No 130
>PRK03612 spermidine synthase; Provisional
Probab=98.74 E-value=8.9e-08 Score=93.38 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC-------------CCCeeEEeCCCCCC---CCCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL-------------HPHIEHVAGDMFQS---VPKG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p~~- 249 (353)
+++.+|||||||+|..+.++++ +|. .+++.+|+ +++++.+++ .+|++++.+|..+. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999997 565 79999999 888888766 16899999998762 2334
Q ss_pred cEEEeccccccCCch---HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 DAIFLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...-...+.. ...++++++++.|+|||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987543321111 12468999999999999988764
No 131
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.74 E-value=1.1e-08 Score=65.77 Aligned_cols=51 Identities=61% Similarity=0.888 Sum_probs=42.6
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
.+|++|+++||||.|.++| ++|.|++||+.+++..+|.++..++|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999975 36999999999999436667889999999985
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.7e-08 Score=80.47 Aligned_cols=100 Identities=11% Similarity=0.225 Sum_probs=79.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~ 249 (353)
+..++..+. ++++.+|||||||+|..+.-+++... +++.++. +...+.|+++ .+|.++++|-...+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 445666666 88899999999999999999998765 8899998 7777777653 5799999999887765 4
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.|+..-..-..|+ .+.+.|+|||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99998877655543 24568999999999776
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.72 E-value=4.5e-08 Score=87.64 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i~ 253 (353)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+- .++. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999988766678999998 667666554 25788888887652 1233 9999
Q ss_pred eccccccCCchH--HHHHHHHHHHhCCCCCEEEEE
Q 018576 254 LKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 254 ~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~ 286 (353)
+...-+.-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 876533222222 358899999999999999986
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.69 E-value=7e-08 Score=80.20 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=71.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG--D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 250 (353)
+.+++.+. ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 35566665 667789999999999999999998 468999998 567666544 3589999999988 55543 8
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.|+++-..| .+.+...+++++. .+.++|.+++...
T Consensus 80 ~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred EEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 887765544 4433333443321 1336677666544
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.69 E-value=1.8e-08 Score=86.07 Aligned_cols=102 Identities=16% Similarity=0.299 Sum_probs=74.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK- 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~- 248 (353)
...+++.+. +.++.+|||||||+|..+.-++... +.-+++.+|. +...+.|+++ .+|.++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 456677777 8888999999999999999999876 4457899998 7777777653 5799999998775554
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ |.|++.......+. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 3 99999988765432 25567999999998554
No 136
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.1e-07 Score=79.94 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=84.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC-CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS-VP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~-~p 247 (353)
...|+.... ..++.+|+|.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ ++|.+..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 334555555 888999999999999999999984 47789999998 7777777653 5699999999883 44
Q ss_pred CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 248 KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
+. |+|++ +++++ -++|.++.++|+|||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 44 88876 46665 4899999999999999999877654
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.65 E-value=2.1e-07 Score=81.34 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC--------CCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV--------PKG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~--------p~~- 249 (353)
..++.+|||||||+|..+..++...| +.+++.+|. ++.++.|+++ ++++++.+|+.+.+ .+.
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44688999999999999999998875 679999998 6677766542 67999999997621 123
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++-. ..+....++..+.+.|+|||.+++-+...
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 9987742 23445688999999999999877655443
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.64 E-value=1.9e-07 Score=80.19 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=71.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHC---CCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEeccccccCCc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKY---PYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDD 263 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~ 263 (353)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++. +++.++..|+.. +.+.. |+|+++--.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 3578999999 7788888765 678999999976 44333 99999977664331
Q ss_pred ----------hHHHHHHHHHHHhCCCCCE
Q 018576 264 ----------EHCLKLLKNCYKSVPEDGK 282 (353)
Q Consensus 264 ----------~~~~~~L~~~~~~L~pgG~ 282 (353)
.-...+++++.+.++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1134689999986666664
No 139
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.63 E-value=4.8e-07 Score=78.14 Aligned_cols=143 Identities=16% Similarity=0.183 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCC-cEEEeccccccCCchHHH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~ 267 (353)
+..++||||.|.|..+..++..+.+ +...+. +.|....+++ +++.+..|-....+.. |+|.|-|+|.-..+ ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~--P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRCDR--PL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhccCC--HH
Confidence 4579999999999999999998875 556666 5565555543 4454444322222223 99999999987654 46
Q ss_pred HHHHHHHHhCCCCCEEEEEeeec--CC--CCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 268 KLLKNCYKSVPEDGKVIVVELML--PE--VPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~i~e~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
.+|+.++++|+|+|++++.-..+ |. ....... +....++ ......+-..+.+.+.|+.+||++++....|
T Consensus 169 ~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~-~P~e~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSN-RPSELLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCC-CchhhcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999998855432 11 0000000 0000111 1101111223344588999999999887664
No 140
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=2.9e-07 Score=87.87 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=77.5
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCC---CCC-C-cEE
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQS---VPK-G-DAI 252 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~---~p~-~-D~i 252 (353)
.++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ .+++++.+|+.+. .+. . |.|
T Consensus 239 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 239 LLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred HcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEE
Confidence 344 55678999999999999999999988789999998 7777766542 2478899998762 222 3 999
Q ss_pred Eeccc------cc-------cCCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLKWI------LH-------DWDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~~~------Lh-------~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++.-- +. .....+ ..++|+++.+.|+|||++++.....
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 84321 11 111111 2479999999999999999888643
No 141
>PLN02672 methionine S-methyltransferase
Probab=98.59 E-value=6.3e-07 Score=92.71 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=85.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------------------CCCeeEEeCCCCCCCC
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------------------HPHIEHVAGDMFQSVP 247 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~rv~~~~~d~~~~~p 247 (353)
+.+|||||||+|..++.+++.+|..+++++|+ +.+++.|++ .+|++++++|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 667765522 1479999999988553
Q ss_pred C---C-cEEEeccc--ccc----CC--------------------------ch----HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 248 K---G-DAIFLKWI--LHD----WD--------------------------DE----HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 248 ~---~-D~i~~~~~--Lh~----~~--------------------------~~----~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. . |+|+++-- ... ++ ++ -.++++..+.+.|+|||.++ .|
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-FN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-EE
Confidence 2 2 88887632 110 00 01 12577888888999999776 44
Q ss_pred eecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH-HHHHhcCCceeeEeee
Q 018576 288 LMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM-TLATGAGFSGIRSDLV 342 (353)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~-~ll~~aGf~~v~~~~~ 342 (353)
.... ..+.+. +++++.||+.++++..
T Consensus 278 iG~~-----------------------------q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGGR-----------------------------PGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECcc-----------------------------HHHHHHHHHHHHCCCCeeEEeee
Confidence 3211 133566 5788888887766553
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.58 E-value=2.8e-07 Score=87.98 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=78.4
Q ss_pred HHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C-CeeEEeCCCCC-CC--CC-C
Q 018576 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P-HIEHVAGDMFQ-SV--PK-G 249 (353)
Q Consensus 182 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~-~~--p~-~ 249 (353)
...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ . ++.+..+|... +. +. .
T Consensus 231 ~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 231 ATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 33444 55678999999999999999999988789999998 6677665432 1 23446677654 22 22 2
Q ss_pred -cEEEec------cccccCCch-------H-------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 250 -DAIFLK------WILHDWDDE-------H-------CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 250 -D~i~~~------~~Lh~~~~~-------~-------~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
|.|++- .+++..++- + -.++|+++.+.|||||+|+..+....
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999852 455544331 1 25899999999999999999987664
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.57 E-value=1.2e-07 Score=80.32 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=68.0
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------CCCCeeEEeCCCCCC----CCCC--cEEEeccccc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------LHPHIEHVAGDMFQS----VPKG--DAIFLKWILH 259 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~----~p~~--D~i~~~~~Lh 259 (353)
.+||||||.|.++..+++.+|+..++|+|. ...+..+. ..+++.++.+|+..- ++.+ |-|++.+-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999999999999998 44454432 247899999998761 3333 6555543321
Q ss_pred cCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 260 DWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 260 ~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+... ...+|..+.+.|+|||.|.+..-
T Consensus 100 -WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 -WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 22111 24899999999999999988764
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.57 E-value=3.2e-07 Score=88.06 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=75.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+++++.+|+.+. ++.. |+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 5566899999999999999999987 6789999999 6666655432 4589999998762 3333 999874
Q ss_pred cc------ccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 WI------LHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~~------Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
-- +.. ++..+ ...+|+++.+.|+|||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 22 111 11111 2468999999999999999766543
No 145
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=4.6e-07 Score=86.93 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=76.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEec--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLK-- 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~-- 255 (353)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+|+++.+|+.+..+. . |+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44568999999999999999998764 468999999 7777766542 4689999998763233 3 999862
Q ss_pred ----ccc-------ccCCchHH-------HHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 256 ----WIL-------HDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 256 ----~~L-------h~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
.++ +.++.+.. .++|+++.+.|+|||+|+.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 12232222 3689999999999999999887653
No 146
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.54 E-value=2.7e-07 Score=84.39 Aligned_cols=98 Identities=23% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------------C----CeeEEeCCCCC-C----C-
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------------P----HIEHVAGDMFQ-S----V- 246 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----rv~~~~~d~~~-~----~- 246 (353)
+..+|||+|||-|+=+....... -..++++|+ ...++.|+++ . ...|+.+|.+. . +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999998777776653 347899999 5667666442 1 24678888875 2 2
Q ss_pred CC--C-cEEEeccccccC--CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 247 PK--G-DAIFLKWILHDW--DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 247 p~--~-D~i~~~~~Lh~~--~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+. . |+|-+.+.||+. +.+.++.+|+++...|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999984 456678899999999999999998765
No 147
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=4.9e-07 Score=86.46 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=77.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C----CCC-C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S----VPK-G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~----~p~-~-D~i 252 (353)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+|+++++|..+ + ... . |.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 55678999999999999999999864 568999998 6677665542 468999999876 3 222 3 999
Q ss_pred Eec------cccccCCc-------hH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLK------WILHDWDD-------EH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~------~~Lh~~~~-------~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++. .+++..++ +. -.++|+++.+.|||||+|+..+...
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 863 34444332 11 2588999999999999999887654
No 148
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.52 E-value=2.5e-07 Score=77.21 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC-CeeEEeCCCCC--CCCCC--cEEEeccccccC--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP-HIEHVAGDMFQ--SVPKG--DAIFLKWILHDW-- 261 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-rv~~~~~d~~~--~~p~~--D~i~~~~~Lh~~-- 261 (353)
...-|||||||+|-.+..+... +..++++|+ |.|++.|.+.. .=+++-+|+-+ |++.+ |.+++...++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 4789999999999887777654 568899999 89999887621 13577788877 45555 888877666433
Q ss_pred -------CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 262 -------DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 262 -------~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+......++..++..|++|++.++.-
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 22334577899999999999988754
No 149
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.48 E-value=4.4e-07 Score=77.19 Aligned_cols=111 Identities=16% Similarity=0.279 Sum_probs=69.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------------CCCeeEEeCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------------HPHIEHVAGDM 242 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d~ 242 (353)
..+++.+. +.+...++|||||.|......+-.++--+++|+++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 34556665 77788999999999999998888776666999997 443333221 25688999999
Q ss_pred CC-CC-----CCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 243 FQ-SV-----PKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 243 ~~-~~-----p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
.+ +. .++|+|++++++ |+ ++...-|.+....||||.+++-...+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 87 32 346999999987 43 556677788889999999988776666543
No 150
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.48 E-value=2e-06 Score=72.35 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=90.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CCCC---C--cEEEeccccccCCch
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SVPK---G--DAIFLKWILHDWDDE 264 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~---~--D~i~~~~~Lh~~~~~ 264 (353)
..++|||||=+...... .++-..++.+|+.. + .-.+.+.||++ |+|. . |+|.++.||-+.+++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns------~--~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNS------Q--HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCC------C--CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999976554333 35566799999833 1 23456788888 8873 2 999999999999966
Q ss_pred H-HHHHHHHHHHhCCCCCE-----EEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 265 H-CLKLLKNCYKSVPEDGK-----VIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 265 ~-~~~~L~~~~~~L~pgG~-----l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
. .-+.|+++++.|+|+|. |+|+-+.. .+ .|.+..+.+.|.++++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~--------------------Cv--~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP--------------------CV--TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch--------------------Hh--hcccccCHHHHHHHHHhCCcEEEE
Confidence 5 44999999999999999 77764421 11 267778899999999999999988
Q ss_pred EeeeC
Q 018576 339 SDLVT 343 (353)
Q Consensus 339 ~~~~~ 343 (353)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76543
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=8.9e-07 Score=84.41 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=76.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C-C-CCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S-V-PKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~-~-p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++.. ++.+++++|+ +..++.++++ .+++++.+|... + . ++. |.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999987 5679999999 6677666542 458899999865 2 2 223 998862
Q ss_pred ------ccccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 256 ------WILHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 256 ------~~Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
.++.. ++.+. -.++|.++.+.|+|||.|+.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12221 12111 25789999999999999988877653
No 152
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.43 E-value=1.5e-06 Score=77.53 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=74.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCC--CcEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPK--GDAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~--~D~i~~~~ 256 (353)
..++.+|||+|||+|..+..+++... ..+++++|. +..++.++++ .++.++..|... +.+. .|.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999999875 468999998 6666655432 468888888754 2222 39888631
Q ss_pred ------ccc-------cCCchHH-------HHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 257 ------ILH-------DWDDEHC-------LKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 257 ------~Lh-------~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
++. .|+.+.. .++|+++.+.|||||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 111 1232222 4699999999999999988776543
No 153
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.43 E-value=8.6e-07 Score=78.20 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchH-HHhhCCCC--------C----CeeEEeCCCCC-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-VIEHAPLH--------P----HIEHVAGDMFQ-S 245 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~--------~----rv~~~~~d~~~-~ 245 (353)
.++..+. ++...++|+|||-|+=++..-+.- --.++++|+++ .++.|+++ . .+.|+.+|.+. .
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3444443 566799999999998877776552 12689999954 58887763 1 26888888875 1
Q ss_pred ----C--CC--CcEEEecccccc-C-CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 246 ----V--PK--GDAIFLKWILHD-W-DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 246 ----~--p~--~D~i~~~~~Lh~-~-~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ ++ -|+|-+.+++|+ | +.+.++-+|+++.+.|+|||+++-.-
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 2 22 299999999998 3 35568899999999999999998644
No 154
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.42 E-value=7.7e-07 Score=80.77 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=91.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEe----CCCCCCC--CCC--cEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVA----GDMFQSV--PKG--DAI 252 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~----~d~~~~~--p~~--D~i 252 (353)
...++||||||+|....-++.+.++++++++|+ +.+++.|++. ++|+++. .+++..+ +.. |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888998889999999999 6677766542 3677654 2333322 233 999
Q ss_pred EeccccccCCchH---HHHHHHHHH----------------HhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh
Q 018576 253 FLKWILHDWDDEH---CLKLLKNCY----------------KSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ 313 (353)
Q Consensus 253 ~~~~~Lh~~~~~~---~~~~L~~~~----------------~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (353)
+++--+|.-.++. ...-.+++. +.+.+||.+-++..+..+.. .+.. ...++..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~------~~~~-~~gwftsm 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK------AFAK-QVLWFTSL 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH------HHHh-hCcEEEEE
Confidence 9999988643321 112233322 22346666655555443320 0000 00111111
Q ss_pred CCCCcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 314 NPGGKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 314 ~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
=++.-+...+.+.|++.|.+.++++.+.
T Consensus 267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 267 --VSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --eeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 2555689999999999999888888774
No 155
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.41 E-value=1.6e-06 Score=69.30 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=89.9
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCC-CCCCeeEEeCCCCC-C--CCC--
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAP-LHPHIEHVAGDMFQ-S--VPK-- 248 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~-~~~rv~~~~~d~~~-~--~p~-- 248 (353)
.++.+.+.++ ++.+.-||++|.|||.++.+++++- +....+.++. ++-..... ..+.+++++||.++ . ..+
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 3455666666 8888999999999999999999865 6667777776 55554444 45889999999986 3 221
Q ss_pred C---cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 249 G---DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 249 ~---D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+ |.|++.--+-.++-....++|+.+...|++||.++-....
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2 9999999999999888889999999999999999887765
No 156
>PLN02476 O-methyltransferase
Probab=98.41 E-value=4.3e-06 Score=74.24 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC--------CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP--------KG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p--------~~- 249 (353)
..++.+|||||+++|..++.+++..| +.+++.+|. ++..+.|++. ++|+++.+|+.+.++ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999999875 568899998 6666666542 689999999876221 22
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
|+||+-. +.......+..+.+.|+|||.+++-+....
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 8887763 345578999999999999999887555443
No 157
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.38 E-value=1.7e-06 Score=74.63 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=70.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---C-CCCC--cEEEecccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---S-VPKG--DAIFLKWIL 258 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~-~p~~--D~i~~~~~L 258 (353)
-.+||||||.|.++..+++++|+..++|+++ ...+..+.+ ..+++++++|+.. . .+.+ |-|++.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999998 444433322 2489999999876 2 3443 655554331
Q ss_pred ccCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 259 HDWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 259 h~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-|+... ...+|+.+.+.|+|||.|.+..-
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 132111 23799999999999999998763
No 158
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.36 E-value=1.2e-06 Score=76.43 Aligned_cols=126 Identities=16% Similarity=0.247 Sum_probs=87.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~- 248 (353)
.|+..++ ..++.+|||.|.|+|.++..|++.. |.-++.-+|. ++..+.|++. ++|.+...|+.+ .+++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4555565 7889999999999999999999855 8899999998 6666666542 579999999965 4432
Q ss_pred ---C-cEEEeccccccCCchHHHHHHHHHHHhC-CCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 249 ---G-DAIFLKWILHDWDDEHCLKLLKNCYKSV-PEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 249 ---~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L-~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
. |.|++ +++++. .++..+.++| +|||++++.-++..+ ..
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 2 88876 466554 7799999999 899999987665422 11
Q ss_pred HHHHHHHhcCCceeeEeee
Q 018576 324 EFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~ 342 (353)
...+.|++.||..+++..+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 2335577789988776654
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.34 E-value=1.1e-06 Score=73.18 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=66.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------CCCeeEEeCCCCCCC-----CC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------HPHIEHVAGDMFQSV-----PK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~-----p~-~-D~ 251 (353)
...+.+|||+|||+|..++.++...+..+++..|.+++++..+. ..++.+...|..++. .. . |+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999999877789999998656553322 256888888765422 22 3 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+.+.++++ ++....+++.+.+.|+|+|.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 5668899999999999998877766544
No 160
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.27 E-value=2.9e-06 Score=76.00 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=59.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~ 251 (353)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ +++.- +.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 34555555 66678999999999999999999975 8899998 7777776543 689999999987 55432 55
Q ss_pred EEeccccccCC
Q 018576 252 IFLKWILHDWD 262 (353)
Q Consensus 252 i~~~~~Lh~~~ 262 (353)
|+.+- =++.+
T Consensus 109 vv~Nl-PY~is 118 (272)
T PRK00274 109 VVANL-PYNIT 118 (272)
T ss_pred EEEeC-Cccch
Confidence 55543 34444
No 161
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.26 E-value=4.1e-06 Score=74.99 Aligned_cols=112 Identities=17% Similarity=0.324 Sum_probs=78.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecc-hHHHhhCCCC----CCeeE--EeCCCCC---CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQ-PHVIEHAPLH----PHIEH--VAGDMFQ---SV 246 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~rv~~--~~~d~~~---~~ 246 (353)
+.++....+ --.+.+|||+|+|+|..+......++.. +++.+|. +.+++.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 344444455 2346799999999999999988888854 6899998 6666655431 11111 1111111 23
Q ss_pred CCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 247 PKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 247 p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+..|+|+++++|-.+++....++++++.+.+.+ .|+|+|+..+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 344999999999999987788999999888776 99999986554
No 162
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.26 E-value=4e-06 Score=74.41 Aligned_cols=90 Identities=14% Similarity=0.244 Sum_probs=62.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCCc-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKGD- 250 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D- 250 (353)
...+++.+. ..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 345666665 66778999999999999999999986 4888888 666665543 3679999999987 555324
Q ss_pred --EEEeccccccCCchHHHHHHHHHHH
Q 018576 251 --AIFLKWILHDWDDEHCLKLLKNCYK 275 (353)
Q Consensus 251 --~i~~~~~Lh~~~~~~~~~~L~~~~~ 275 (353)
+|+.+-. ++++. .++.++..
T Consensus 95 ~~~vvsNlP-y~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLP-YNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCC-hhhHH----HHHHHHhc
Confidence 5554443 33443 44555443
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.25 E-value=1.4e-06 Score=74.34 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCC-------C-C-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVP-------K-G- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-------~-~- 249 (353)
..++.+||+||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+.++ . .
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34688999999999999999999987 589999998 666666654 2689999999875221 1 2
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+||+-. ...+....+..+.+.|+|||.+++-+...
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9988864 24556789999999999999888765543
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.24 E-value=5.9e-06 Score=73.48 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCCcE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKGDA 251 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D~ 251 (353)
...+++.+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345566555 5667899999999999999999983 58999998 667766544 3679999999987 6655588
Q ss_pred EEeccccccCCc
Q 018576 252 IFLKWILHDWDD 263 (353)
Q Consensus 252 i~~~~~Lh~~~~ 263 (353)
|+++-..+ ++.
T Consensus 95 Vv~NlPy~-i~s 105 (258)
T PRK14896 95 VVSNLPYQ-ISS 105 (258)
T ss_pred EEEcCCcc-cCc
Confidence 87765543 443
No 165
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.22 E-value=5e-06 Score=70.60 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC--C-C-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP--K-G-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p--~-~-D~i~~~~~L 258 (353)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++. .+++++.+|+++.++ . . |+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666543 68999998 6666555432 478999999876322 2 2 999998774
Q ss_pred ccCCchHHHHHHHHHHHh--CCCCCEEEEEe
Q 018576 259 HDWDDEHCLKLLKNCYKS--VPEDGKVIVVE 287 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~--L~pgG~l~i~e 287 (353)
+. .....+++.+... |+|++.+++..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 43 2234555555543 78877666543
No 166
>PLN02823 spermine synthase
Probab=98.21 E-value=5.9e-06 Score=75.77 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCCCC---CC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQSVP---KG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~p---~~-D~i~ 253 (353)
+++.+||.||+|.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|....+. +. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4578999999999999999998666678999999 778877764 2689999999887322 23 9999
Q ss_pred eccccccCCc--h---HHHHHHH-HHHHhCCCCCEEEEE
Q 018576 254 LKWILHDWDD--E---HCLKLLK-NCYKSVPEDGKVIVV 286 (353)
Q Consensus 254 ~~~~Lh~~~~--~---~~~~~L~-~~~~~L~pgG~l~i~ 286 (353)
+-.. ..+.. . --..+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8631 11100 0 0246787 899999999998764
No 167
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.20 E-value=8.6e-06 Score=72.24 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=74.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D 250 (353)
.++.+...+ .+.-|||||||+|-++.-.++.- ..++..++.++|.+.|++. +||..+.|.+.+ ++|+. |
T Consensus 168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhccccc-CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 444443312 35789999999999887766653 4588999999998888752 799999999998 89986 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+|++--.=..+-.+....---.+++.|+|.|.++=
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 99876433222223333333346799999998763
No 168
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.18 E-value=6.6e-06 Score=70.26 Aligned_cols=100 Identities=15% Similarity=0.270 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEe-CCCCCCC----CCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVA-GDMFQSV----PKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~-~d~~~~~----p~~-D~i 252 (353)
..++.+||+||.+.|..++.++...| +.+.|.+|. ++..+.|++. ++|..+. +|..+.+ .+. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 789999999 7788887763 6688888 5876622 123 998
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
|+-. ...+-.++|..+.+.|+|||.+++-+...+.
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 8752 2455679999999999999998876665543
No 169
>PRK00536 speE spermidine synthase; Provisional
Probab=98.17 E-value=8.7e-06 Score=71.73 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=68.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCCCCCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQSVPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~~~p~~-D~i~~~ 255 (353)
.+++.+||=||||.|..++++++. |. +++.+|+ +.+++.++++ +|++++.. +.+...+. |+|+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 467899999999999999999996 54 9999998 7788877762 78888762 22111233 999977
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.. + + ..+.+.++++|+|||.++.+-
T Consensus 147 s~---~-~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE---P-D---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC---C-C---hHHHHHHHHhcCCCcEEEECC
Confidence 53 1 2 477899999999999999854
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.16 E-value=6.2e-05 Score=65.19 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=84.5
Q ss_pred hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh-hCCCCCCeeEEe-CCCCC----CCC-
Q 018576 176 LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE-HAPLHPHIEHVA-GDMFQ----SVP- 247 (353)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~rv~~~~-~d~~~----~~p- 247 (353)
.....+++.+....++.++||+|||||.++..+++. +..+++++|. +.++. ..++.+++.... .|+.. .++
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 344566666651235679999999999999999986 4568999999 43544 566667764333 34432 111
Q ss_pred C---CcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE-EeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 248 K---GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV-VELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 248 ~---~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
+ .|+.+++.. .+|..+.+.|+| |.+++ +-+-..-.+.. ........+-. ......+
T Consensus 140 d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~-------~~~~~~~ 199 (228)
T TIGR00478 140 DFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKE-------AIALALH 199 (228)
T ss_pred CceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHH-------HHHHHHH
Confidence 1 165555543 347888999999 65443 32222111000 00000111110 0112356
Q ss_pred HHHHHHHhcCCceeeEeeeC
Q 018576 324 EFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~~ 343 (353)
++..++.+.||++..+.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 200 KVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHcCCCeEeeEEECC
Confidence 67778888999988877654
No 171
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.16 E-value=9.2e-06 Score=72.46 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=77.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCCC---CCCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQS---VPKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~~---~p~~-D~i 252 (353)
.+++.+||-||+|.|.++.++++..+--+++.+|+ +.+++.+++. +|++.+..|..+- .+.. |+|
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 34557999999999999999999988889999999 8888877652 7899999998762 3334 999
Q ss_pred EeccccccCCch---HHHHHHHHHHHhCCCCCEEEEE
Q 018576 253 FLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 253 ~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
++-.+=.. ... --..+++.++++|+|+|.++..
T Consensus 154 i~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 88755331 110 0258999999999999999988
No 172
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.14 E-value=1.4e-05 Score=72.67 Aligned_cols=104 Identities=12% Similarity=0.199 Sum_probs=75.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC----CCeEEEecch-HHHhhC----C--CCCCeeE--EeCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP----YIKGINFDQP-HVIEHA----P--LHPHIEH--VAGDMFQS 245 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~~-~~~~~a----~--~~~rv~~--~~~d~~~~ 245 (353)
..++..++ ....|+|+|||+|.-+..|++.+. ..+++.+|++ +.++.+ + ..+.+.+ +.+|+.++
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 456899999999998777777653 4679999983 455433 2 2355655 78888652
Q ss_pred ---CC-----CC-c-EEEeccccccCCchHHHHHHHHHHH-hCCCCCEEEE
Q 018576 246 ---VP-----KG-D-AIFLKWILHDWDDEHCLKLLKNCYK-SVPEDGKVIV 285 (353)
Q Consensus 246 ---~p-----~~-D-~i~~~~~Lh~~~~~~~~~~L~~~~~-~L~pgG~l~i 285 (353)
++ .. . ++++.+++.+++++++..+|+++++ .|+||+.|+|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 22 12 4 4566689999999999999999999 9999998887
No 173
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=5.9e-06 Score=72.08 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=80.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
+..++...+ ....++|+|||.|.+ ...+|.+..++.|+ ...+..+++.........|+.. |.++. |..+
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky----~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKY----LGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred HHHHHhccC---CcceeeecccCCccc----CcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence 344444433 468999999999976 44458889999999 4556666654444677788887 66653 9999
Q ss_pred eccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 254 LKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
...++|+|+... ...+++++.+.++|||..+|.-...
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999998555 4599999999999999988765543
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.11 E-value=6.8e-06 Score=78.31 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=76.7
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhcccc---CCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEecc-hH
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGF---ANIKQLVDVGGNLGVTLQAITSKY----PYIKGINFDQ-PH 224 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 224 (353)
++-+++++-....|.+++. ..+.+..... .....|+|||||+|-++...++.. ...++..++- +.
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred HhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 5566777766666666552 2333333211 125789999999999987766553 4578999986 33
Q ss_pred HHhhC----CC---CCCeeEEeCCCCC-CCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 225 VIEHA----PL---HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 225 ~~~~a----~~---~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
.+... +. .++|+++.+|+.+ ..|+- |+|++-..=.....+-...+|....+.|+|||.++
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 22211 11 2789999999998 67765 99977644332223445677888899999998765
No 175
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.11 E-value=7.9e-06 Score=78.47 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=67.9
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC-----C
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS-----V 246 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~-----~ 246 (353)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+. +
T Consensus 287 ~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 287 ARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence 34444444 4556899999999999999999875 58999998 7788776642 4699999998652 2
Q ss_pred CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 247 PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 247 p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
+.. |+|++.---. ....+++.+.+ ++|++.+++.
T Consensus 364 ~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 364 ALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEE
Confidence 222 9988753321 12345555544 6887766653
No 176
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.11 E-value=2.6e-06 Score=79.95 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEe---cc-hHHHhhCCCCCCeeEEeCCCC--C-CCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINF---DQ-PHVIEHAPLHPHIEHVAGDMF--Q-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~rv~~~~~d~~--~-~~p~~--D~i~~~~~Lh~ 260 (353)
..+.+||||||+|.++..++++. +..+-+ |. +..++.|.++. |-.+-+-+- . |+|.. |+|.++.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccccccc
Confidence 44689999999999999999973 333222 22 23344444331 322222221 2 77765 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|...+ ..+|-++-|+|||||++++.-+-.
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCcc
Confidence 98665 478999999999999999877643
No 177
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.10 E-value=7.7e-06 Score=82.82 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC---CCCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS---VPKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~---~p~~-D~i~~~~ 256 (353)
.+.+|||+|||+|.++..+++. ...+++++|. +.+++.++++ ++++++.+|+++. .+.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999999985 3447999999 6677766542 3799999998762 2233 9999852
Q ss_pred cccc--------CC-chHHHHHHHHHHHhCCCCCEEEEE
Q 018576 257 ILHD--------WD-DEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 257 ~Lh~--------~~-~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
--.. +. ......+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 2100 00 123467899999999999988764
No 178
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.07 E-value=1.4e-05 Score=75.20 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCC------CCC-cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSV------PKG-DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~------p~~-D~i~ 253 (353)
++.+|||+|||+|.++...+.. +..+++.+|. +.+++.++++ ++++++.+|+++.. ... |+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 4458999998 6677666542 36899999998732 123 9999
Q ss_pred eccccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 254 LKWILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 254 ~~~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+.---..-+. .....+++.+.+.|+|||.|+....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8744211111 1234566678899999999997653
No 179
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=4.9e-05 Score=65.87 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeC----CCCCCC--CCC--cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAG----DMFQSV--PKG--DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~----d~~~~~--p~~--D~i 252 (353)
..+..+||+|||+|..+..++...|+.+++.+|. +..+..|.+ .+++..+.. |.+.+. +.+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999998 444554433 367777754 444433 234 888
Q ss_pred Eec--cccccCC----------------------chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLK--WILHDWD----------------------DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~--~~Lh~~~----------------------~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+++ ++.++=. -+....++.-+-|.|+|||.+.+.-.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 876 3332200 01233556667889999998876443
No 180
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.05 E-value=2.2e-05 Score=70.88 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=64.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 248 (353)
...+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345666555 6667899999999999999999874 46889998 667665543 3679999999987 5544
Q ss_pred CcEEEeccccccCCchHHHHHH
Q 018576 249 GDAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 249 ~D~i~~~~~Lh~~~~~~~~~~L 270 (353)
-|+|+++ .-++++.+...++|
T Consensus 102 ~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEec-CCcccCcHHHHHHH
Confidence 4877654 44456655555555
No 181
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=3.1e-05 Score=65.31 Aligned_cols=140 Identities=21% Similarity=0.215 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CC--eeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PH--IEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~r--v~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
..-.++|||||.|.....+.... =-+.+..|. -.|++.++.. +. +....+|-.. ++.++ |+|+++..+|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 34589999999999999998875 226788887 6788877764 43 3456666554 56665 999999999965
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc-----c-CHHHHHHHHHhcCCc
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE-----R-TKHEFMTLATGAGFS 335 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-t~~~~~~ll~~aGf~ 335 (353)
++ ...-+.++..+|||+|.++-.-..- +. ...+.....+.-+.-. +|-. + -..++-.+|..|||+
T Consensus 151 Nd--LPg~m~~ck~~lKPDg~Fiasmlgg-dT-----LyELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 ND--LPGSMIQCKLALKPDGLFIASMLGG-DT-----LYELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred cc--CchHHHHHHHhcCCCccchhHHhcc-cc-----HHHHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 43 6788999999999999887533211 10 1111122222222111 2211 1 134677899999999
Q ss_pred eeeE
Q 018576 336 GIRS 339 (353)
Q Consensus 336 ~v~~ 339 (353)
...+
T Consensus 222 m~tv 225 (325)
T KOG2940|consen 222 MLTV 225 (325)
T ss_pred ccee
Confidence 7655
No 182
>PRK04148 hypothetical protein; Provisional
Probab=98.04 E-value=4.5e-05 Score=59.82 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=71.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchH-HHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCC---CC-cEEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGV-TLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVP---KG-DAIF 253 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p---~~-D~i~ 253 (353)
.+.+.++ -.+..++||||||+|. ++..|.+. +.+++++|. +..++.+++. .++++..|.+++-+ ++ |+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 3455555 3445899999999996 77777754 579999999 6677766653 57999999998533 34 9998
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
+... ..+...-+.++.+.+ |.-++|.....+
T Consensus 83 sirp-----p~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 83 SIRP-----PRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred EeCC-----CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 8754 456666677777754 466776655443
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.03 E-value=1.4e-05 Score=70.00 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCC---------CC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVP---------KG 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---------~~ 249 (353)
..++.+||+||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+-++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 44578999999999999999999874 679999998 666666654 2789999999876221 23
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+||+-.- .......+..+.+.|+|||.+++=+..
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 88887632 345678899999999999997764443
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.99 E-value=1.4e-05 Score=77.71 Aligned_cols=98 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC-C---C--CCCeeEEeCCCCC---CCCCC--cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA-P---L--HPHIEHVAGDMFQ---SVPKG--DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~---~--~~rv~~~~~d~~~---~~p~~--D~i~~~~~ 257 (353)
....+||||||.|.++..+++.+|+..++|+|. ...+..+ + + ..++.++++|+.. .+|.+ |-|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 356899999999999999999999999999998 3333322 1 1 2578888887642 35554 76666544
Q ss_pred cccCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 258 LHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 258 Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
= -|+... ...+|+.+++.|+|||.+.+..-
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 132111 24899999999999999998653
No 185
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.95 E-value=8.8e-06 Score=71.64 Aligned_cols=100 Identities=20% Similarity=0.290 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC---CCCC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ---SVPK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~-D~ 251 (353)
.+++.+||=||+|.|..+.++++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..++ . |+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 34689999999999999999987666678999999 777777755 2699999999876 3445 4 99
Q ss_pred EEeccccccCCch--HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 252 IFLKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 252 i~~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+.-..=-..+.. -...+++.+++.|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8874332111111 13589999999999999999876
No 186
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.94 E-value=2.2e-05 Score=71.98 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC-C-CC-cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV-P-KG-DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~-p-~~-D~i~~~~~ 257 (353)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++. ++++++.+|+.+ .. . .. |+|++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 3579999999999999999984 468999998 7778766542 579999999876 21 2 23 99888743
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.1e-05 Score=64.49 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=68.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCC----------------CCeeEEeCCCCCCCCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLH----------------PHIEHVAGDMFQSVPK 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~rv~~~~~d~~~~~p~ 248 (353)
+.++.+.||||+|+|.++..++.-. +....+|+|. ++.++.++++ .++.++.+|-....++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4567899999999999999888543 4445589997 8887766542 4688999998874443
Q ss_pred -C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 -G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 -~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ |.|.+.-. +.++.+++...|+|||+++|--
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEee
Confidence 3 99887732 3466777888999999999843
No 188
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00012 Score=61.51 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=81.7
Q ss_pred HHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CC-
Q 018576 170 MYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SV- 246 (353)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~- 246 (353)
.++.+.....++.+.+.-+++..+|+|+|+..|+++..+++.. ++.+++++|+.++- ..++|.++++|+.. +.
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTL 100 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHH
Confidence 3444555567788877645788999999999999999999987 45679999984432 24569999999987 32
Q ss_pred -------CC-C-cEEEecccc---ccC------CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 247 -------PK-G-DAIFLKWIL---HDW------DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 247 -------p~-~-D~i~~~~~L---h~~------~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+. . |+|++-..= -++ .-.-+..++.-+..+|+|||.+++-.+-
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 1 777743221 111 1222557788888899999999987654
No 189
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00084 Score=54.84 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=83.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC----C-CCeeEEeCCCCCCCC-CC-cEEEeccccccC
Q 018576 191 IKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL----H-PHIEHVAGDMFQSVP-KG-DAIFLKWILHDW 261 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~rv~~~~~d~~~~~p-~~-D~i~~~~~Lh~~ 261 (353)
+.-++|||||+|..+..|++.. |+..+...|+ |+.++...+ + -+++.+..|+.+.+. +. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999998876 8888999998 666554332 2 456788888887443 33 888887443222
Q ss_pred CchHH-------------------HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 262 DDEHC-------------------LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 262 ~~~~~-------------------~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
++++. .++|..+-..|.|.|.++++-... | ..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-------------------------N----~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-------------------------N----KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-------------------------c----CH
Confidence 22221 234444444445555555433211 1 24
Q ss_pred HHHHHHHHhcCCceeeEee---eCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDL---VTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~---~~~~~~vi~~~~ 353 (353)
+++-.+++.-||....... ....++++.+++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 5677788888988654432 234677776653
No 190
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.89 E-value=2.1e-05 Score=70.79 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCC-CC-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVP-KG-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p-~~-D~i~~~~~Lh 259 (353)
....|||||||||-+++--++.. ..++.++|.+++++.+++. +.|+++.+.+.+ .+| +. |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999888876 6789999998777766542 458999998888 777 44 9998776544
Q ss_pred cCC-chHHHHHHHHHHHhCCCCCEEE
Q 018576 260 DWD-DEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 260 ~~~-~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
.+- +.-...+|-.==+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 432 3334455555557899999876
No 191
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.85 E-value=8.1e-05 Score=71.37 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=65.8
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---C--CC
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---V--PK 248 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~--p~ 248 (353)
+...+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+. + ..
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence 334333 4566899999999999999999874 47999998 7788777652 5799999998642 1 12
Q ss_pred -C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 249 -G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
. |+|++.-.=-.+ ...+++.+.+ ++|++.+++
T Consensus 361 ~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 361 QIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 888864321111 1355665553 788776555
No 192
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.82 E-value=0.00031 Score=59.62 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=89.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCC---CCCCC--cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQ---SVPKG--DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~---~~p~~--D~i~ 253 (353)
.+++.+|||...|-|.++++.+++- ..+++-++- |.+++.|.-+ .+++.+.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 4578899999999999999988873 336766666 7788877654 358999999887 34543 7764
Q ss_pred eccc-cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhc
Q 018576 254 LKWI-LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGA 332 (353)
Q Consensus 254 ~~~~-Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 332 (353)
---- |..-..-....+-+++++.|+|||+++-..-.... .+ .|+. -.....+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ry------------rG~d-~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RY------------RGLD-LPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------cc------------ccCC-hhHHHHHHHHhc
Confidence 2100 00001223568999999999999999865432211 01 1211 244677889999
Q ss_pred CCceeeEeeeC
Q 018576 333 GFSGIRSDLVT 343 (353)
Q Consensus 333 Gf~~v~~~~~~ 343 (353)
||..++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988776553
No 193
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=7.3e-05 Score=61.55 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCCcEEEeccccccCCc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKGDAIFLKWILHDWDD 263 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~ 263 (353)
++.+|+|+|||||.+++..+-..| .+++++|+ |+.++.++++ .+|.|++.|+.+.-..-|.++++--+--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 467899999999999988776543 58999998 8888887764 5799999998753333377777755543321
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
..=..+|.++.+.- +.+. . =.+.-+.+.+....++.|+++...
T Consensus 124 haDr~Fl~~Ale~s---------~vVY----------------s--------iH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKALEIS---------DVVY----------------S--------IHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHHHhh---------heEE----------------E--------eeccccHHHHHHHHHhcCCeEEEE
Confidence 11135566555543 1100 0 011126777888899999887655
No 194
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.78 E-value=3.2e-05 Score=64.92 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=66.9
Q ss_pred hhHHHHHHhccccC--CCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC-------
Q 018576 176 LIMSNILESYKGFA--NIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS------- 245 (353)
Q Consensus 176 ~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~------- 245 (353)
..+.++.+.++-++ +..++||+||++|+++..++++. +..+++++|+..+ .....+.++.+|+.++
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhh
Confidence 34567777776333 45899999999999999999988 7789999998443 1123455555555431
Q ss_pred --CC---CC-cEEEeccccccC---------CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 246 --VP---KG-DAIFLKWILHDW---------DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 246 --~p---~~-D~i~~~~~Lh~~---------~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.+ .. |+|++-.....- +-+-+...|.-+...|+|||.+++--.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11 13 888776522111 112234555666677899999887554
No 195
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=2.4e-05 Score=69.91 Aligned_cols=102 Identities=19% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCe-EEEecchHHHh----hCCCC---CCeeEEeCCCCC---CCCCCcEEEeccccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIK-GINFDQPHVIE----HAPLH---PHIEHVAGDMFQ---SVPKGDAIFLKWILH 259 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~----~a~~~---~rv~~~~~d~~~---~~p~~D~i~~~~~Lh 259 (353)
+.+|||||.|.|.-+.++-.-+|+++ ++.++.+..+. ....+ ........|+.. ++|.+|.|++..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 56799999999999999999999985 56666532222 11111 223333444433 566678888877777
Q ss_pred cCCchH----HHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 260 DWDDEH----CLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 260 ~~~~~~----~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.+-... +...++++...+.|||.|+|+|...|.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 654333 334899999999999999999976543
No 196
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.74 E-value=2.8e-05 Score=65.08 Aligned_cols=89 Identities=12% Similarity=0.203 Sum_probs=67.7
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH---HHhhCCC---CCCeeEEeCCCCC-CCCCC-cEEEeccccccCCc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH---VIEHAPL---HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDD 263 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~ 263 (353)
+++|||+|.|.-++-++-.+|+.+++.+|. .. .++.+.. .++++++++.+.+ ..+.. |+|+++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 21 2222221 2679999998876 34444 9999997742
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
...++.-+...++|||+++..-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 4588999999999999998864
No 197
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.73 E-value=0.00011 Score=62.03 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---C--CC-C-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---V--PK-G-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~--p~-~-D~i~~ 254 (353)
.+.+|||++||+|.++.+++.+.. .+++.+|. +.+++.+++. ++++++.+|.++. . .. . |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 367999999999999999999865 37999998 5555544431 4789999998652 1 11 2 66666
Q ss_pred ccccccCCchHHHHHHHHHHH--hCCCCCEEEEEeee
Q 018576 255 KWILHDWDDEHCLKLLKNCYK--SVPEDGKVIVVELM 289 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~~ 289 (353)
---... .....++..+.. .|+++|. +++|..
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~i-iv~E~~ 160 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVL-IVVEED 160 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeE-EEEEec
Confidence 544432 223344554433 5667665 445543
No 198
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.68 E-value=0.0001 Score=66.27 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=54.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~ 244 (353)
..++++.+. ..++..+||.+||.|+.+..+++.+| +.+++++|. +++++.+++. +|+.++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 456777776 56667999999999999999999996 789999999 8888877653 478888888865
No 199
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.66 E-value=0.00074 Score=61.25 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCC--CC-cEEEeccccccCCchH
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVP--KG-DAIFLKWILHDWDDEH 265 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p--~~-D~i~~~~~Lh~~~~~~ 265 (353)
.++.++|||||++|+++..++++ +.+++++|...+-......++|.+..+|.+...| .. |.+++-.+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 46789999999999999999998 5699999987777777778999999999988443 33 9988887743
Q ss_pred HHHHHHHHHHhCCCC-CEEEEEeeecC
Q 018576 266 CLKLLKNCYKSVPED-GKVIVVELMLP 291 (353)
Q Consensus 266 ~~~~L~~~~~~L~pg-G~l~i~e~~~~ 291 (353)
..++++-+.+.|..| .+-.|...-.|
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 246677777788777 45555555444
No 200
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.65 E-value=0.00015 Score=67.98 Aligned_cols=90 Identities=9% Similarity=-0.038 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC---CC-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP---KG-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p---~~-D~i~~~~~L 258 (353)
+..+|||++||+|.++..++.. ..+++++|. +.+++.+++. ++++++.+|+.+..+ .. |+|++.--=
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999864 468999998 6777766542 478999999865221 22 988887442
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
-.+ ..++++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 134455554 46887665553
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.0004 Score=60.85 Aligned_cols=92 Identities=15% Similarity=0.287 Sum_probs=62.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCC----CCCCeeEEeCCCCC-CCCC--C-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP----LHPHIEHVAGDMFQ-SVPK--G- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~rv~~~~~d~~~-~~p~--~- 249 (353)
...+++... ..+..+|||||+|.|.++..|+++...+.++-+| +.+++..+ ..++++.+.+|+.+ +++. .
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 456777666 5668899999999999999999997654444444 33333333 34789999999998 7775 3
Q ss_pred cEEEeccccccCCchHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKN 272 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~ 272 (353)
+.|+ ++.=++++.+-..++|..
T Consensus 97 ~~vV-aNlPY~Isspii~kll~~ 118 (259)
T COG0030 97 YKVV-ANLPYNISSPILFKLLEE 118 (259)
T ss_pred CEEE-EcCCCcccHHHHHHHHhc
Confidence 4444 445555665544444444
No 202
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.64 E-value=0.0021 Score=56.92 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HH-------HhhCC---C---------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HV-------IEHAP---L--------------------------- 231 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~-------~~~a~---~--------------------------- 231 (353)
...+||-=|||.|.++-+++.. +..+.+.+.+ .| +.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 4566666642 11 11111 1
Q ss_pred ---------CCCeeEEeCCCCC-CCCC---C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC
Q 018576 232 ---------HPHIEHVAGDMFQ-SVPK---G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT 296 (353)
Q Consensus 232 ---------~~rv~~~~~d~~~-~~p~---~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~ 296 (353)
..++....|||.+ .-+. + |+|+..+.+.- ...+.+.|+.|.+.|||||..+=.-+..-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~--- 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHF--- 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccC---
Confidence 0247788899988 2222 3 99988877743 4668899999999999999555443332110
Q ss_pred ccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 297 SIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
.+.. ......-+.+.+|+..+.+..||++++...
T Consensus 209 ---------~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 ---------EPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 000112467899999999999999876544
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.56 E-value=0.00022 Score=61.92 Aligned_cols=75 Identities=15% Similarity=0.279 Sum_probs=59.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 248 (353)
...|+...+ ..+...||+||.|||.++..++++ +.+++.++. |.+++...++ .+.+.+.+|+++ ++|.
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 456777676 788899999999999999999998 567888887 6666654432 568999999998 8887
Q ss_pred CcEEEec
Q 018576 249 GDAIFLK 255 (353)
Q Consensus 249 ~D~i~~~ 255 (353)
-|.++.+
T Consensus 124 fd~cVsN 130 (315)
T KOG0820|consen 124 FDGCVSN 130 (315)
T ss_pred cceeecc
Confidence 6777664
No 204
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.55 E-value=0.00057 Score=58.26 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=84.6
Q ss_pred EEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCC---CcEEEeccccccCC
Q 018576 194 LVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPK---GDAIFLKWILHDWD 262 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~---~D~i~~~~~Lh~~~ 262 (353)
|.||||-.|.+...|++....-+++..|+ +..++.|++ .++|++..+|-++.++. .|.|++... .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999998 666666654 27899999998875543 377776644 3
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
-.-..++|.+....++...+|+++-. .....+++||.+.||.+++-.-+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 45577888888777766556665221 12557899999999998865443
Q ss_pred ---CCceEEEEEe
Q 018576 343 ---TGNFWVMEFY 352 (353)
Q Consensus 343 ---~~~~~vi~~~ 352 (353)
+-.+-+|.+.
T Consensus 126 ~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 126 EENGRFYEIIVAE 138 (205)
T ss_dssp EETTEEEEEEEEE
T ss_pred eECCEEEEEEEEE
Confidence 2345566553
No 205
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00092 Score=55.16 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=85.0
Q ss_pred ccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhC-----------CC--CCCeeEEeCCCCC-CCCCC-c
Q 018576 187 GFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHA-----------PL--HPHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----------~~--~~rv~~~~~d~~~-~~p~~-D 250 (353)
+++.+..|+|+=.|.|.++.-|.... |.-.+..+-..+...-+ ++ ..+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37788999999999999999888865 55555544433332111 11 1344444444444 33333 6
Q ss_pred EEEeccccccC-----CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHH
Q 018576 251 AIFLKWILHDW-----DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEF 325 (353)
Q Consensus 251 ~i~~~~~Lh~~-----~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 325 (353)
+++....-|++ ......++.+.++++|||||.+++.|+......... +-. . -+ .+...-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------dt~-~----~~-ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------DTI-T----LH-RIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------hhh-h----hc-ccChHHH
Confidence 66554333332 134567999999999999999999998765432211 100 0 11 2345667
Q ss_pred HHHHHhcCCceeeE
Q 018576 326 MTLATGAGFSGIRS 339 (353)
Q Consensus 326 ~~ll~~aGf~~v~~ 339 (353)
.+..+.+||+..-.
T Consensus 190 ~a~veaaGFkl~ae 203 (238)
T COG4798 190 IAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHhhcceeeee
Confidence 77888899987543
No 206
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.53 E-value=0.0032 Score=58.64 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCchHHHHHH--------HHH-------CCCCeEEEecchH----H----HhhCCC------------CCC
Q 018576 190 NIKQLVDVGGNLGVTLQAI--------TSK-------YPYIKGINFDQPH----V----IEHAPL------------HPH 234 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~----~----~~~a~~------------~~r 234 (353)
+..+|+|+|||+|.++..+ .++ .|..++..-|+|. . +...++ ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999766543 222 2567888888751 1 111000 011
Q ss_pred ---eeEEeCCCCC-CCCCC--cEEEeccccccCCc--h----------------------------------HHHHHHHH
Q 018576 235 ---IEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD--E----------------------------------HCLKLLKN 272 (353)
Q Consensus 235 ---v~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~--~----------------------------------~~~~~L~~ 272 (353)
+.-++|.|.+ -+|.+ +++++++.||.++. + +...+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2345578888 68876 99999999998762 1 11234444
Q ss_pred HHHhCCCCCEEEEEeeecCC
Q 018576 273 CYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 273 ~~~~L~pgG~l~i~e~~~~~ 292 (353)
=.+-|.|||+++++-...+.
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 45668999999998877653
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.00037 Score=59.47 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=84.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH---HHhhCCC---CCCeeEEeCCCCC-C-CCC-CcEEEecccccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH---VIEHAPL---HPHIEHVAGDMFQ-S-VPK-GDAIFLKWILHD 260 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~rv~~~~~d~~~-~-~p~-~D~i~~~~~Lh~ 260 (353)
+.+++|||+|.|.-+.-++-.+|+.+++.+|. .. -++.+.. .++++++++.+.+ . .+. -|+|+++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 68999999999999999999999999999997 22 2333322 3779999988876 2 223 5999988663
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
....++.-+...+++||.++..-.. .++. -..+.+.....-||...++.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~~--------------------------~~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKGL--------------------------AGKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhhhHH--------------------------hhhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2457788888899999887652211 1111 13355566666788887777
Q ss_pred eeC
Q 018576 341 LVT 343 (353)
Q Consensus 341 ~~~ 343 (353)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 653
No 208
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.25 E-value=0.00076 Score=54.08 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=62.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSK----YPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~-D~ 251 (353)
..+..+|+|+|||.|.++..++.. .|+++++++|. +..++.+.++ .++++..++... ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 27899999998 5455544331 456666666554 22333 77
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++.-++.-++++ .+|+...+ |+...+++-++
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEEEcCC
Confidence 776666655543 55555444 66666655444
No 209
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.25 E-value=0.00061 Score=63.90 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=68.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC--C-CcEEEecccccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP--K-GDAIFLKWILHD 260 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p--~-~D~i~~~~~Lh~ 260 (353)
..+|||++||+|.+++.++...+..+++++|. +..++.++++ +++.+..+|+...+. . .|+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999999887668999998 6777666542 456788888865222 2 29998853 2
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.. ...++..+.+.++|||.+.+.
T Consensus 135 -Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 22 246788877889999999998
No 210
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.24 E-value=0.0027 Score=51.13 Aligned_cols=95 Identities=14% Similarity=0.246 Sum_probs=64.3
Q ss_pred EEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC---CC---eeEEeCCCCC---CCCC--C-cEEEeccccc
Q 018576 194 LVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH---PH---IEHVAGDMFQ---SVPK--G-DAIFLKWILH 259 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~r---v~~~~~d~~~---~~p~--~-D~i~~~~~Lh 259 (353)
++|+|||+|... .+....+. ..++++|. +.++..++.. .. +.+...|... ++.. . |++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 34443333 47888888 5455543321 11 5777777654 3443 3 888 444444
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
++.+ ....++++.+.++|+|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4433 578999999999999999998876543
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.24 E-value=0.00088 Score=59.73 Aligned_cols=96 Identities=13% Similarity=0.267 Sum_probs=65.1
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC----CCCCeeEEeCCCCC-CCCC--
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP----LHPHIEHVAGDMFQ-SVPK-- 248 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~rv~~~~~d~~~-~~p~-- 248 (353)
....+++.+. ..+...|||||+|+|.++..|++.. .++++++. +..++..+ ..++++++.+|+.+ ..+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 3456777776 6788999999999999999999987 67888887 44444333 35899999999998 5554
Q ss_pred --CcEEEeccccccCCchHHHHHHHHHHHhCCC
Q 018576 249 --GDAIFLKWILHDWDDEHCLKLLKNCYKSVPE 279 (353)
Q Consensus 249 --~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~p 279 (353)
....+..+.=++.+ ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence 33344444433433 3566666654333
No 212
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.22 E-value=0.00044 Score=57.38 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=64.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh-------hCCCC------CCeeEEeCCCCCCCCC----C---
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE-------HAPLH------PHIEHVAGDMFQSVPK----G--- 249 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~~------~rv~~~~~d~~~~~p~----~--- 249 (353)
..-+.|||||-|.++..|...||+.-+.|.++ ..+.+ .++.. .++.....+.+.-.|+ +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 45799999999999999999999999999987 33333 22221 4456665555543332 2
Q ss_pred cEEEeccccccCCch-----HHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 DAIFLKWILHDWDDE-----HCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~-----~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
-..++.--=|.+... -...++.+..=+|++||.++.+.-+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 222222222322211 1246788888899999999987754
No 213
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.014 Score=50.09 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=95.6
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc--hHHHhhCCCCCCeeEEeC-CCCCC----CCCC
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ--PHVIEHAPLHPHIEHVAG-DMFQS----VPKG 249 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~-d~~~~----~p~~ 249 (353)
.....++.|.-...+..+||||..||+|+..++++- ..++.++|. .+.....+..+||..++. |+..- +.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccC
Confidence 345566666622467899999999999999999863 457888887 455566677788777664 44322 2222
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe-eecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE-LMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|++++--.+- ....+|-.+...++|++-++..- +-....+.. ........+ +........++.+
T Consensus 145 ~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~ 210 (245)
T COG1189 145 PDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIEN 210 (245)
T ss_pred CCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHH
Confidence 7777765442 24688999999999998666532 222111100 000000111 1122334678899
Q ss_pred HHHhcCCceeeEeeeC
Q 018576 328 LATGAGFSGIRSDLVT 343 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~ 343 (353)
++++.||+...+.+.+
T Consensus 211 ~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 211 FAKELGFQVKGLIKSP 226 (245)
T ss_pred HHhhcCcEEeeeEccC
Confidence 9999999998887653
No 214
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.17 E-value=0.00017 Score=46.96 Aligned_cols=46 Identities=28% Similarity=0.420 Sum_probs=39.8
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence 45788888764 57899999999999 999999999999999999974
No 215
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.16 E-value=0.0014 Score=54.84 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=61.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCe---------EEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIK---------GINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK- 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~- 248 (353)
+.+...|+|-=||+|+++++.+...++.. +++.|. +.+++.++++ ..+.+...|+.+ +.+.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 66778999999999999998887766666 899998 6677666542 458999999988 6443
Q ss_pred C-cEEEecccccc-CCc-hH----HHHHHHHHHHhCCCC
Q 018576 249 G-DAIFLKWILHD-WDD-EH----CLKLLKNCYKSVPED 280 (353)
Q Consensus 249 ~-D~i~~~~~Lh~-~~~-~~----~~~~L~~~~~~L~pg 280 (353)
. |+|++.--.-. ... .+ ..++++++.++|+|.
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3 99988754332 111 11 246788888899983
No 216
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.15 E-value=0.0015 Score=59.16 Aligned_cols=94 Identities=22% Similarity=0.375 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC-------------CCCeeEEeCCCCCCCC---CC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL-------------HPHIEHVAGDMFQSVP---KG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~p---~~- 249 (353)
++..++|-+|||.|-.++++.+ ||+ -+++.+|+ |.|++.++. .+|++.+..|.++-.. +.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4567999999999999999876 785 47899999 899998873 1789999999987322 22
Q ss_pred cEEEeccccccCCchH--------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDEH--------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~--------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.|+.- ++|+. ...+-+-++++|+++|.++++-.
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 766653 33322 24677788899999999998654
No 217
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.13 E-value=0.00053 Score=63.46 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HHHhhCCC-------CCCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HVIEHAPL-------HPHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
+...++|+|||.|.....+.. +-..+.+++|.. ..+..+.. +.+..++..|+.. +++++ |.+-+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 345899999999999888776 446788888873 33333322 2455668889888 77765 999888888
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
.+.++ ...++++++++++|||+.++.|.+....
T Consensus 189 ~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 88765 4689999999999999999999876543
No 218
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.11 E-value=0.0058 Score=54.29 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------CCCeeEEeCCCCCCC----------CCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------HPHIEHVAGDMFQSV----------PKG 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~----------p~~ 249 (353)
.+..+|+.+|||-=.....+... +++++.-+|.|++++..++ .++++++..|+...+ |..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999988776666321 3588999999988864432 367899999986322 112
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~~~ 327 (353)
-++++-.++.+++.+++.++|+.+.+...||+.++ .|...+-.... ............. ....+-....+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEW-RAGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhH-HHHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 58888899999999999999999999988888777 45443311100 0000000000000 00000011246789999
Q ss_pred HHHhcCCceeeE
Q 018576 328 LATGAGFSGIRS 339 (353)
Q Consensus 328 ll~~aGf~~v~~ 339 (353)
+|++.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998765
No 219
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=97.11 E-value=0.0023 Score=57.17 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=72.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHC--------------------CCCeEEEecc---hHHHhhCCC----------------
Q 018576 191 IKQLVDVGGNLGVTLQAITSKY--------------------PYIKGINFDQ---PHVIEHAPL---------------- 231 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~---------------- 231 (353)
..+||.||||.|.-..+++..+ |.++++.+|+ ..++.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998777776655 2368899997 344443211
Q ss_pred -----C--CCeeEEeCCCCC-CCC--------CC-cEEEeccccccC---CchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 232 -----H--PHIEHVAGDMFQ-SVP--------KG-DAIFLKWILHDW---DDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 232 -----~--~rv~~~~~d~~~-~~p--------~~-D~i~~~~~Lh~~---~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
. =.+.|.+.|+.+ ..+ .. ++|++-++++.+ +..+-.++|.++-+.++||..|+|+|..-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 147899999987 221 13 888888887653 34456799999999999999999999743
No 220
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.04 E-value=0.0034 Score=60.37 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=70.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---CCCCC-cEEE--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---SVPKG-DAIF-- 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~-D~i~-- 253 (353)
..++.+|||+++|.|.=+..++....+ ..++..|+ +.-++..++ ..++.+...|... .++.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998854 57899997 443433322 1557777777654 23333 7777
Q ss_pred --ecc---------ccccCCchHH-------HHHHHHHHHhCCCCCEEEEEeee
Q 018576 254 --LKW---------ILHDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 254 --~~~---------~Lh~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+. +...|+.+.+ .++|.++.+.|||||+|+-+..+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 331 1223443332 58999999999999999776654
No 221
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.03 Score=46.83 Aligned_cols=136 Identities=12% Similarity=0.095 Sum_probs=94.5
Q ss_pred HhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-----hHHHhhCCCCCCeeEEeCCCCCCCC-----CC-cE
Q 018576 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-----PHVIEHAPLHPHIEHVAGDMFQSVP-----KG-DA 251 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~ 251 (353)
+.++ ++++.+||=+|..+|+...++..-.++-.+.+++. .+.+..+++++++--+-+|+..|.. +. |+
T Consensus 70 ~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 70 KNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred ccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccE
Confidence 3455 78899999999999999999999888666667775 3567788888999999999876532 23 87
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
|+.-=. . .+++.-+..++..-|++||++++.=-....+... .... ...+-.+.|++
T Consensus 149 iy~DVA---Q-p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~-------------------dp~~-vf~~ev~kL~~ 204 (231)
T COG1889 149 IYQDVA---Q-PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA-------------------DPEE-VFKDEVEKLEE 204 (231)
T ss_pred EEEecC---C-chHHHHHHHHHHHhcccCCeEEEEEEeecccccC-------------------CHHH-HHHHHHHHHHh
Confidence 765422 1 3556778889999999999888765443322111 0111 12223345788
Q ss_pred cCCceeeEeeeC
Q 018576 332 AGFSGIRSDLVT 343 (353)
Q Consensus 332 aGf~~v~~~~~~ 343 (353)
.||++.++..+.
T Consensus 205 ~~f~i~e~~~Le 216 (231)
T COG1889 205 GGFEILEVVDLE 216 (231)
T ss_pred cCceeeEEeccC
Confidence 999999887765
No 222
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.01 E-value=0.00059 Score=56.79 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCC--C-cEEEeccccccCCch
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPK--G-DAIFLKWILHDWDDE 264 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~--~-D~i~~~~~Lh~~~~~ 264 (353)
..+.++||+|.|.|..+..++..+.. +...++ ..|..+.++. +.+.... .+-+.. . |+|.|.+.|.-..+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc~~- 184 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRCFD- 184 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhhcC-
Confidence 35689999999999998888766543 233334 2344444332 1221111 111111 1 99999999976544
Q ss_pred HHHHHHHHHHHhCCC-CCEEEEEeeecCC-CCCCccccccccccchhhhhhCCCCccc--CHHHHHHHHHhcCCceeeEe
Q 018576 265 HCLKLLKNCYKSVPE-DGKVIVVELMLPE-VPNTSIESKSNSHIDVLMMTQNPGGKER--TKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 265 ~~~~~L~~~~~~L~p-gG~l~i~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~--t~~~~~~ll~~aGf~~v~~~ 340 (353)
.-++|+.++.+|+| .|++++.=...-. ...... .-....-+. .+. . +|+.+ ....+.++|+++||.+....
T Consensus 185 -p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~-~g~~~rPdn-~Le-~-~Gr~~ee~v~~~~e~lr~~g~~veawT 259 (288)
T KOG3987|consen 185 -PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNT-SGLPLRPDN-LLE-N-NGRSFEEEVARFMELLRNCGYRVEAWT 259 (288)
T ss_pred -hHHHHHHHHHHhccCCCcEEEEEEecccceeecCC-CCCcCCchH-HHH-h-cCccHHHHHHHHHHHHHhcCchhhhhh
Confidence 36999999999999 6887764322110 000000 000000111 111 1 44432 23356788999999987665
Q ss_pred ee
Q 018576 341 LV 342 (353)
Q Consensus 341 ~~ 342 (353)
..
T Consensus 260 rl 261 (288)
T KOG3987|consen 260 RL 261 (288)
T ss_pred cC
Confidence 54
No 223
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=97.01 E-value=0.00087 Score=51.51 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 24 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
-..++|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+|+.. +.|. ...|++++
T Consensus 8 ~~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~-r~Gr-~~~Y~l~~ 75 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDR-KQGK-WVHYRLSP 75 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-EEcC-EEEEEECc
Confidence 445677777899999999864 48999999999999 899999999999999999987 3442 45677654
No 224
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.00031 Score=56.08 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=66.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------CCCeeEEeCCCCC--CCC-C-C-cEEEe
Q 018576 191 IKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------HPHIEHVAGDMFQ--SVP-K-G-DAIFL 254 (353)
Q Consensus 191 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~--~~p-~-~-D~i~~ 254 (353)
+.+||++|+| +|-.++-++...|...+-+.|- ...++..++ ..++..+..+... .+. . . |+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 5799999999 5556666677778888888886 445554433 1344444444333 122 2 2 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..++.. ++....+.+.|...|+|.|+-++.-
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 999965 6777899999999999999866544
No 225
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.0053 Score=50.47 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=68.3
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeC-CCCCC------
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAG-DMFQS------ 245 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~-d~~~~------ 245 (353)
+....-++-+.+.-+.+..+|||+||..|.++.-..++. |+-.+.++|+-+.. .-..+.++.+ |+.+|
T Consensus 53 sAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 53 SAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred hhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHH
Confidence 333344555666635678999999999999999888887 99999999973221 1133444444 44332
Q ss_pred ---CCCC--cEEEecccc---------ccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 246 ---VPKG--DAIFLKWIL---------HDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 246 ---~p~~--D~i~~~~~L---------h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.|.- |+|++-..= |.-.-+-|..+|.-....++|+|.+++--+..
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 1221 555543221 11112234556666667778899888765543
No 226
>PHA00738 putative HTH transcription regulator
Probab=96.95 E-value=0.0011 Score=49.23 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=51.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-.+..|+..|..+ +++++.+|++.+++ .+..+.+.|+.|...|+|... +.|. ...|++++..
T Consensus 12 ptRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~sr-K~Gr-~vyY~Ln~~~ 73 (108)
T PHA00738 12 ILRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELY-KEGR-TLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEE-EECC-EEEEEECCCc
Confidence 3678899999884 37999999999999 999999999999999999988 5553 5667766443
No 227
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.93 E-value=0.00057 Score=43.45 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=39.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
++.|+..|.+ +|.++.||++.+|+ .+..+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCeeC
Confidence 5677888888 59999999999999 99999999999999999974
No 228
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.89 E-value=0.00091 Score=45.16 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=46.4
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.+|.--.++.|+..|... +|.|+.|||+.+|+ ++..+.+.|+.|...|+|+..
T Consensus 4 ~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 4566667889999999443 59999999999999 999999999999999999986
No 229
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.87 E-value=0.002 Score=44.54 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHhChhhhhhhcCCCC-CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 32 VYELGIFQIIDKAGPGA-KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~-~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
..+-.|+..|...| + +.|+.|||+.+|+ +...++|+|..|...|+|.+.. + .+..|.++.
T Consensus 6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~--~-~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG--DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG--G-TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC--CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC--C-CCCceEeec
Confidence 35667888898874 2 2999999999999 8999999999999999999862 1 246787663
No 230
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.87 E-value=0.0044 Score=56.01 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecchHHHhhCCC----C-----CCeeEEeCCCCC-CCCC-----C----
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQPHVIEHAPL----H-----PHIEHVAGDMFQ-SVPK-----G---- 249 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~----~-----~rv~~~~~d~~~-~~p~-----~---- 249 (353)
+..+|+-+|||-=.-+-.+ ..| .+++.-+|.|++++..++ . .++++++.|+.+ +++. |
T Consensus 92 g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 3689999999966443333 233 478899999999886544 2 379999999995 5431 1
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcc-ccccccccchhhhhhCCCCcccCHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSI-ESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
-++++-.+|.+++.+++.++|..|.....||..++......+....... ...............-+.-......++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 5888999999999999999999999999999988876642111100000 0000000000000000011123478999
Q ss_pred HHHHhcCCceeeE
Q 018576 327 TLATGAGFSGIRS 339 (353)
Q Consensus 327 ~ll~~aGf~~v~~ 339 (353)
.++.+.||..+..
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999998766
No 231
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.026 Score=51.47 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=72.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeC-CCCC-CCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAG-DMFQ-SVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~-d~~~-~~p~~--D~i~~~~ 256 (353)
..++..|||==||||+++++..-. +++++|.|+ ..|++-++.+ ....+... |+.. ++++. |.|.+--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456779999999999999988765 789999999 5677777654 34444554 8877 77764 7776532
Q ss_pred c------cccCC-chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 257 I------LHDWD-DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~------Lh~~~-~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
- ..-.. ++-..++|..+.++|++||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11111 34467999999999999999998654
No 232
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.85 E-value=0.0021 Score=52.78 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=72.5
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCCcEEEeccccccCCc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKGDAIFLKWILHDWDD 263 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~ 263 (353)
..+.|+|.|+|-++.-.++. .-+++.++. |...+.+.++ .++..+++|..+ .+..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68899999999988776665 457888887 6666555553 679999999998 7756699987654333334
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++-+.+++.+..-||-++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 55678999999999999888766544
No 233
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.02 Score=51.08 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=93.2
Q ss_pred HHHHHHhccc---cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc------hHHHhhCCC-----------------
Q 018576 178 MSNILESYKG---FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ------PHVIEHAPL----------------- 231 (353)
Q Consensus 178 ~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~----------------- 231 (353)
++.+.+.+|. .....+||-=|||.|.++..|+...+.+++--+-. .-++...+.
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~ 214 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSL 214 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccc
Confidence 4445555552 12357999999999999999999877766521110 111111110
Q ss_pred ----------------------CCCeeEEeCCCCCC--CCC--C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEE
Q 018576 232 ----------------------HPHIEHVAGDMFQS--VPK--G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 232 ----------------------~~rv~~~~~d~~~~--~p~--~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l 283 (353)
.+......|||.+- .+. + |+|+..+.+.- ...+...|..|...|+|||..
T Consensus 215 ~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 215 SRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVW 292 (369)
T ss_pred ccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEE
Confidence 01234466888873 333 2 88888866643 456789999999999999998
Q ss_pred EEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 284 IVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 284 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
+=+-+..-.-. ...+.. ...+-+.|.+++..+.+.-||++++-..+
T Consensus 293 iNlGPLlYHF~---------d~~g~~----~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 293 INLGPLLYHFE---------DTHGVE----NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred Eeccceeeecc---------CCCCCc----ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 86665432110 000000 01244678999999999999998765543
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.82 E-value=0.018 Score=49.01 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=87.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-h----HHHhhCCCCCCeeEEeCCCCCCCC-----CC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-P----HVIEHAPLHPHIEHVAGDMFQSVP-----KG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~i~~~ 255 (353)
+.++.+||-+|.++|++..++..-. |+-.+.+++. + +.+..|+++++|--+-.|...|.. +. |+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6788999999999999999998865 4777888886 3 556778888999999999876422 23 877665
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
=. + .++.+-++.++..-||+||.+++.=-....+.. ....-...+=.+.|++.||+
T Consensus 151 Va-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t--------------------~~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q---PDQARIAALNARHFLKPGGHLIISIKARSIDST--------------------ADPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS--------------------SSHHHHHHHHHHHHHCTTCE
T ss_pred CC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCc--------------------CCHHHHHHHHHHHHHHcCCC
Confidence 33 2 255778889999999999999986433211100 00001122334567888999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
..+...+.
T Consensus 207 ~~e~i~Le 214 (229)
T PF01269_consen 207 PLEQITLE 214 (229)
T ss_dssp EEEEEE-T
T ss_pred hheEeccC
Confidence 98888774
No 235
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0028 Score=49.82 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC---cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG---DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~---D~i~~~~~L 258 (353)
++..++|+|||.|-+. ++-.+|. -.++|+|+ |+.++.++++ -++++.+.|+.++.+.+ |..+++.-+
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4689999999999988 3444444 46899999 8899988875 24678888887754432 666666544
No 236
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.70 E-value=0.024 Score=48.10 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC----C---CCCeeEEeCCCCCCCC-C-C-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP----L---HPHIEHVAGDMFQSVP-K-G-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~---~~rv~~~~~d~~~~~p-~-~-D~i~~~~~L 258 (353)
...++.||||-.|.+.+.+++..|...++..|. +...+.|. + .++++...+|-+.++. + . |++++..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 445699999999999999999999999999997 44444332 2 2789999999887543 3 2 8777664
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
+.-.-+..+|.+-...|+.--++++.- +. ...++++||.+.+|.++.
T Consensus 94 --MGG~lI~~ILee~~~~l~~~~rlILQP----------------------------n~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 --MGGTLIREILEEGKEKLKGVERLILQP----------------------------NI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred --CcHHHHHHHHHHhhhhhcCcceEEECC----------------------------CC---CHHHHHHHHHhCCceeee
Confidence 334556788888777776434555421 11 245678888888888765
Q ss_pred Ee
Q 018576 339 SD 340 (353)
Q Consensus 339 ~~ 340 (353)
-.
T Consensus 141 E~ 142 (226)
T COG2384 141 ET 142 (226)
T ss_pred ee
Confidence 43
No 237
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.68 E-value=0.0013 Score=55.81 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC--cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG--DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~--D~i~~~~~L 258 (353)
.++..|+|.-||.|.+++.+++..+..+++..|+ |..++..++ ..++..+.+|..+-.+.. |-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 4678999999999999999999777888999999 666654433 267899999987733333 988886532
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
+ ...+|..+.+.+++||.+.
T Consensus 180 ~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 S------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S------GGGGHHHHHHHEEEEEEEE
T ss_pred H------HHHHHHHHHHHhcCCcEEE
Confidence 2 2467888888999888763
No 238
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.67 E-value=0.0045 Score=54.98 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCch-HHHHHHHHHC-CCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCC-CCC-CC-cEEEec
Q 018576 190 NIKQLVDVGGNLG-VTLQAITSKY-PYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQ-SVP-KG-DAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G-~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~p-~~-D~i~~~ 255 (353)
.+.+|+=||||.= -.++.+++.+ ++..++++|. ++.++.+++ ..++.|+.+|..+ ... .. |+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4579999999954 5666666654 6788999998 666666643 2689999999876 322 23 988887
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
...- .+.++..++|.++.+.|+||+.+++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654 23345679999999999999988875
No 239
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.01 Score=51.08 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=75.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC----CeEEEecchH-HHh-----hCCCCCC--eeEEeCCCCC---CCCCC---
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY----IKGINFDQPH-VIE-----HAPLHPH--IEHVAGDMFQ---SVPKG--- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~-~~~-----~a~~~~r--v~~~~~d~~~---~~p~~--- 249 (353)
..+...++|+|+|+..-+.-|+..+.+ .+++-+|+.. +++ ..++++. |.-+++|+.. ..|..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345789999999999988888887755 7899999843 332 2233455 4556778765 34443
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
=.+++..+|-+++.++|..+|..++.+|+||-++++
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 566788999999999999999999999999988887
No 240
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.61 E-value=0.0029 Score=46.35 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=46.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
-+.|++.|...+ +++|+.|||+.+++ +..-+.|.|+.|+..|++.+.. .++.|.+++
T Consensus 7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~----~~~~y~l~~ 63 (91)
T smart00346 7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG----QNGRYRLGP 63 (91)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC----CCCceeecH
Confidence 356778887642 48999999999999 9999999999999999999752 245677664
No 241
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.61 E-value=0.0024 Score=59.45 Aligned_cols=51 Identities=8% Similarity=0.101 Sum_probs=41.8
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ 244 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 244 (353)
.+|||++||+|.++..+++... +++++|. +++++.+++. ++++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999998 7778777653 468888888754
No 242
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.60 E-value=0.0038 Score=45.01 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=39.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
++.|.++||+.+++ ++..++++++.|...|+++.. .|. ++.|.++....
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~--~G~-~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESS--RGR-GGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE--TST-TSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEec--CCC-CCceeecCCHH
Confidence 46999999999999 999999999999999999876 343 57788774433
No 243
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.58 E-value=0.0035 Score=57.37 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=65.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH-------CCCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCC-CC-C--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSK-------YPYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQ-SV-P-- 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~-p-- 247 (353)
.....+|+|-.||+|.++.++.+. .+..++.|+|. +.++..++- ........+|.+. +. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456679999999999999998874 47788999998 555544331 1334688888876 32 2
Q ss_pred CC-cEEEeccccccC--Cch-----------------HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 248 KG-DAIFLKWILHDW--DDE-----------------HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~--~~~-----------------~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.. |+|+++--+-.. .+. .--.++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 23 988887333221 111 112588999999999999877664
No 244
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.58 E-value=0.033 Score=51.38 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHH--------HC--------CCCeEEEecchH--HHhhCCC----------CCC--eeE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITS--------KY--------PYIKGINFDQPH--VIEHAPL----------HPH--IEH 237 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~--~~~~a~~----------~~r--v~~ 237 (353)
.++..+|+|+||.+|..+..+.. ++ |.++++.-|+|. --...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999998875442 22 345778888741 1111110 122 345
Q ss_pred EeCCCCC-CCCCC--cEEEeccccccCCc-------------------------hH------------HHHHHHHHHHhC
Q 018576 238 VAGDMFQ-SVPKG--DAIFLKWILHDWDD-------------------------EH------------CLKLLKNCYKSV 277 (353)
Q Consensus 238 ~~~d~~~-~~p~~--D~i~~~~~Lh~~~~-------------------------~~------------~~~~L~~~~~~L 277 (353)
+++.|.. -+|.+ |++++++.||.++. +. ...+|+.=.+=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6789998 68876 99999999998762 01 112333334557
Q ss_pred CCCCEEEEEeeecCC
Q 018576 278 PEDGKVIVVELMLPE 292 (353)
Q Consensus 278 ~pgG~l~i~e~~~~~ 292 (353)
+|||+++++-...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999999988766
No 245
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.56 E-value=0.0027 Score=50.82 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=40.2
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCC
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMF 243 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~ 243 (353)
.++|||||.|.++..+++.+|..+++++|. |.+.+.+++. +++.+++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999999999998 6666655432 45666665554
No 246
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.54 E-value=0.025 Score=47.73 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-----CCCeeEEeCCC---CCCCCCC--cEEEec-cc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-----HPHIEHVAGDM---FQSVPKG--DAIFLK-WI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d~---~~~~p~~--D~i~~~-~~ 257 (353)
.++.|||.||=|-|-....+.++-|..+.+.---|++.++.+. ..+|....+-. ...+|.+ |-|+.- +.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 6789999999999988877777777766665555888877764 36777777744 3345554 665443 22
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
=|+ ++...+.+.+.+.|||+|.+-....+..+
T Consensus 180 e~y---Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY---EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hHH---HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 232 66789999999999999998887765443
No 247
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.53 E-value=0.0013 Score=53.70 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=43.1
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCC---C--C-CcEEEecc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSV---P--K-GDAIFLKW 256 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---p--~-~D~i~~~~ 256 (353)
.|+|+-||.|+.++++++.+. +++.+|. +..++.++. .++|+++.+|+++.. . . .|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 699999999999999999975 5888887 555655543 268999999998722 2 1 28888764
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.42 E-value=0.0033 Score=55.25 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=59.2
Q ss_pred EEeCCCCC--CC------CC-CcEEEeccccccCC--chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccc
Q 018576 237 HVAGDMFQ--SV------PK-GDAIFLKWILHDWD--DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305 (353)
Q Consensus 237 ~~~~d~~~--~~------p~-~D~i~~~~~Lh~~~--~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~ 305 (353)
.+..|... |+ |. .|+|++.++|...+ .++-.+.++++.++|||||.|++........ +.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 56677766 22 33 49999999998754 3446799999999999999999988753221 01
Q ss_pred cchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 306 ~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
..-.. + ..-..+.+.+++.|+++||.+++...
T Consensus 208 vG~~~---F-~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 VGGHK---F-PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ETTEE---E-E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ECCEe---c-ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 0 11134789999999999999887764
No 249
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.42 E-value=0.025 Score=47.00 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=68.1
Q ss_pred HHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cEEEe
Q 018576 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DAIFL 254 (353)
Q Consensus 182 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~i~~ 254 (353)
+...|+.-.+.+|||+|.|+|-.++.-++.- ...++..|. |..++..+-+ -.+.+...|... .|.. |+|+.
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~La 148 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLA 148 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEe
Confidence 3334435567899999999999988777653 335555555 4444443322 246777777765 3334 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCC-CCCEEEEEeeecCC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVP-EDGKVIVVELMLPE 292 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~ 292 (353)
..++++- ....+++. .++.|+ .|..+++-++..+.
T Consensus 149 gDlfy~~--~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 149 GDLFYNH--TEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred eceecCc--hHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 9999874 44567777 555555 45566666655443
No 250
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.40 E-value=0.0013 Score=49.78 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=39.6
Q ss_pred EEEcCCchHHHHHHHHHCCCC---eEEEecc-h---HHHhhCCC---CCCeeEEeCCCCCC---CC-CC-cEEEeccccc
Q 018576 195 VDVGGNLGVTLQAITSKYPYI---KGINFDQ-P---HVIEHAPL---HPHIEHVAGDMFQS---VP-KG-DAIFLKWILH 259 (353)
Q Consensus 195 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~rv~~~~~d~~~~---~p-~~-D~i~~~~~Lh 259 (353)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.+|..+- ++ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998877544 6899998 4 23333332 26899999998652 33 23 8777654 23
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. .+....-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 3556788999999999999888754
No 251
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.37 E-value=0.0024 Score=45.35 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=43.0
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
|+..+.. ++.+..+|+..+++ +...+.++|+.|...|+++.. ++.|.+|+.|..++
T Consensus 11 IL~~l~~----~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 11 ILKILSK----GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHH-T----T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE------TTEEEE-HHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC------CCEEEECccHHHHH
Confidence 4455544 48999999999999 999999999999999999764 78999999988765
No 252
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.021 Score=48.75 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=73.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhC-------CCCCCeeEEeCCCCCCC----CC----C-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHA-------PLHPHIEHVAGDMFQSV----PK----G- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~~~----p~----~- 249 (353)
.-++.++||||.=||..+..++...|. -+++.+|. +...+.+ .-...|++++++..+.+ ++ .
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 345889999999999999999999975 68899997 3333333 33467999999887632 22 1
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
|.+|.- +|. ........++.+.+|+||.|++-....+.
T Consensus 151 DfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 666543 344 34559999999999999999876655544
No 253
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.34 E-value=0.004 Score=58.17 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=41.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ 244 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 244 (353)
.+|||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 8999998 7777766542 468888888754
No 254
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.34 E-value=0.024 Score=57.82 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=71.6
Q ss_pred hHHHHHHhcccc-CCCCeEEEEcCCchHHHHHHHHHC----C--------------------------------------
Q 018576 177 IMSNILESYKGF-ANIKQLVDVGGNLGVTLQAITSKY----P-------------------------------------- 213 (353)
Q Consensus 177 ~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~----p-------------------------------------- 213 (353)
.+..++.... + .+...++|-.||+|+++++.+... |
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 3444554333 6 556899999999999999876521 1
Q ss_pred CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCC--C--CcEEEeccccc-cCC-chHHHHHHHHHHHhCC
Q 018576 214 YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVP--K--GDAIFLKWILH-DWD-DEHCLKLLKNCYKSVP 278 (353)
Q Consensus 214 ~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p--~--~D~i~~~~~Lh-~~~-~~~~~~~L~~~~~~L~ 278 (353)
..+++++|. +.+++.|+.+ +++.+..+|+.+ +.+ . .|+|+++--.- .+. +.+...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 7778776653 568999999987 333 1 29998884431 122 2334444444444443
Q ss_pred ---CCCEEEEEee
Q 018576 279 ---EDGKVIVVEL 288 (353)
Q Consensus 279 ---pgG~l~i~e~ 288 (353)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8988877664
No 255
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.0031 Score=50.14 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=54.8
Q ss_pred EEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHH
Q 018576 194 LVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L 270 (353)
.+-||||.=. -.|++..|-+.- ++.+.+++-.... .+... |+|.+.+++.|+.-++-..++
T Consensus 6 kv~ig~G~~r-------~npgWi~~d~ed---------~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al 69 (185)
T COG4627 6 KVKIGAGGKR-------VNPGWIITDVED---------RPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL 69 (185)
T ss_pred EEEEeccccc-------cCCCceeeehhc---------ccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 4678888643 256665443321 1223333332222 44433 999999999999988999999
Q ss_pred HHHHHhCCCCCEEEEEee
Q 018576 271 KNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 271 ~~~~~~L~pgG~l~i~e~ 288 (353)
+.+++.|||||+|-|.-+
T Consensus 70 kechr~Lrp~G~LriAvP 87 (185)
T COG4627 70 KECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHhCcCcEEEEEcC
Confidence 999999999999998654
No 256
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.23 E-value=0.0031 Score=45.06 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=48.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceecccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l 105 (353)
++++|...|... +..++.+|.+.+|+ +...+.+.|+.|...|+|+..-. ++.-...|.+|+.|+..
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~ 68 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREA 68 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHH
Confidence 477888888885 48999999999999 99999999999999999998721 11112247888777643
No 257
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.18 E-value=0.017 Score=56.84 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC--------CeEEEecc-hHHHhhCCCC----C--CeeEEeCCCCC-C------CC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY--------IKGINFDQ-PHVIEHAPLH----P--HIEHVAGDMFQ-S------VP 247 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--rv~~~~~d~~~-~------~p 247 (353)
...+|||.+||+|.++..++...+. .+++++|+ +..+..++.. . .+.....|+.. . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887752 46789998 5555544321 2 34555555443 1 11
Q ss_pred CC-cEEEec
Q 018576 248 KG-DAIFLK 255 (353)
Q Consensus 248 ~~-D~i~~~ 255 (353)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 23 888887
No 258
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=96.18 E-value=0.0055 Score=39.02 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhccccee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVE 84 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~ 84 (353)
.+..|+..|.+. ++.|..|||+.+|+ ....+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 456788889886 37999999999999 9999999999999999985
No 259
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.077 Score=46.50 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=73.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchH-----HHhhCCCC---CCeeEEeCCCCC-CCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPH-----VIEHAPLH---PHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~---~rv~~~~~d~~~-~~p 247 (353)
...|+..+. ..++.+|++-|.|+|.++..+++.. |.-+..-+|..+ ..+..+++ +++++...|+.. .++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 445666666 7889999999999999999999987 888888888732 22333333 678999999887 444
Q ss_pred C----CcEEEeccccccCCchHHHHHHHHHHHhCCCC-CEEEEEeeec
Q 018576 248 K----GDAIFLKWILHDWDDEHCLKLLKNCYKSVPED-GKVIVVELML 290 (353)
Q Consensus 248 ~----~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pg-G~l~i~e~~~ 290 (353)
. +|.|++- ++.+. ..+-.++.+||.+ |+|+...++.
T Consensus 173 ~ks~~aDaVFLD-----lPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFLD-----LPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEEc-----CCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 2888874 33332 4455566688865 4777655554
No 260
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=96.11 E-value=0.0087 Score=46.20 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=41.1
Q ss_pred HHhChhhhhh-hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIID-KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..++.+|- .. +|.|+++||+.++. +..-+.|-|+-|...|++.++.
T Consensus 28 ~Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 28 LDVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 3455666666 44 69999999999999 9999999999999999999984
No 261
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.11 E-value=0.0067 Score=41.71 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=40.5
Q ss_pred hhhhhh-hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccc
Q 018576 37 IFQIID-KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVS 102 (353)
Q Consensus 37 lf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~ 102 (353)
++..|. .. ++.|..+|++.+++ +...+.+.++.|...|+|++.. .++. ...|.+|+.|
T Consensus 8 vL~~l~~~~---~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R-~~~~~LT~~G 68 (68)
T PF13463_consen 8 VLRALAHSD---GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKR-SKRYRLTPAG 68 (68)
T ss_dssp HHHHHT--T---S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTT-SEEEEE-HHH
T ss_pred HHHHHHccC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCC-eeEEEeCCCC
Confidence 444555 32 59999999999999 9999999999999999998773 1221 2458888754
No 262
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.09 E-value=0.003 Score=43.59 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=41.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..++..|-.. ++.|+++||+.+|+ +...+.+.|+.|...|++.+.
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777654 59999999999999 999999999999999999987
No 263
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=96.09 E-value=0.009 Score=40.16 Aligned_cols=46 Identities=24% Similarity=0.180 Sum_probs=37.2
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.|.+.|.... +|+|..|||+.+|+ +..-++++|..|+..|.+.+.+
T Consensus 4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 4566666621 59999999999999 9999999999999999999864
No 264
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=95.99 E-value=0.0077 Score=53.07 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=48.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-+.|++.|...+ .++|+.|||+.+|+ +..-+.|+|..|+..|++.+++ ++++|.++...
T Consensus 6 al~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~----~~g~Y~Lg~~~ 64 (246)
T COG1414 6 ALAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP----EDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEeehHHH
Confidence 356788888742 34679999999999 8999999999999999999872 25689988543
No 265
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.98 E-value=0.0092 Score=37.72 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=35.5
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceec
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSL 98 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~ 98 (353)
|.|..+||+.+++ +...+.+.|+.|.+.|++... .+.|.+
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~------~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE------GGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe------CCEEEE
Confidence 7899999999999 899999999999999999975 456654
No 266
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.97 E-value=0.048 Score=46.19 Aligned_cols=105 Identities=19% Similarity=0.155 Sum_probs=59.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHH---HHHC-CCCeEEEecc--hHHHhhCCCC----CCeeEEeCCCCCC---C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAI---TSKY-PYIKGINFDQ--PHVIEHAPLH----PHIEHVAGDMFQS---V 246 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l---~~~~-p~~~~~~~D~--~~~~~~a~~~----~rv~~~~~d~~~~---~ 246 (353)
+++-.+. +..|+++|.-.|+-+.-+ ++.+ +..+++++|+ +..-..+.+. +||++++||..++ .
T Consensus 26 eli~~~k----Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 26 ELIWELK----PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp HHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHH
T ss_pred HHHHHhC----CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHH
Confidence 4554444 789999999888766644 4555 7889999998 2222223232 8999999998752 1
Q ss_pred C-----C-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 247 P-----K-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 247 p-----~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+ . . -++++-..=|.. +.+.+.|+.....++||++++|-|...
T Consensus 102 ~v~~~~~~~~~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp TSGSS----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred HHHHhhccCCceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 1 1 1 345555555543 346788999999999999999987654
No 267
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.91 E-value=0.0077 Score=53.21 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=47.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-+.|++.+...+ .|.|+.|||+.+|+ +..-+.|+|..|+..|++.++ ++.|++.+..
T Consensus 11 al~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~------~~~Y~lG~~~ 67 (248)
T TIGR02431 11 GLAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD------GRLFWLTPRV 67 (248)
T ss_pred HHHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEecHHH
Confidence 356777887643 58999999999999 899999999999999999874 4679887543
No 268
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.91 E-value=0.02 Score=53.60 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC----CC---cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP----KG---DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p----~~---D~i~ 253 (353)
.+.+|||+=|=||.++...+..- ..++|.+|. ...++.++++ +++.++++|.++.+. .+ |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 38899999999999999888762 238999998 5567766653 568999999997332 22 9998
Q ss_pred eccc-cc-----cCC-chHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 254 LKWI-LH-----DWD-DEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 254 ~~~~-Lh-----~~~-~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+--- +- -|+ ...-.+++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 7421 10 011 223468899999999999999987754
No 269
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.91 E-value=0.021 Score=38.97 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.++|..+||+.+|+ ....+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~-----~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR-----GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec-----CCCeEEeCC
Confidence 48999999999999 999999999999999999986 125677653
No 270
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.88 E-value=0.0071 Score=50.69 Aligned_cols=97 Identities=20% Similarity=0.146 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC------CCC-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV------PKG-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~------p~~-D~i~~ 254 (353)
.+.++||+=||||.++.+.+.+. ..+++.+|. +..+...+++ ++++.+..|.+..+ ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 47899999999999999988874 347899998 5555544432 46889999976521 223 99998
Q ss_pred ccccccCCchHHHHHHHHHH--HhCCCCCEEEEEeeec
Q 018576 255 KWILHDWDDEHCLKLLKNCY--KSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~--~~L~pgG~l~i~e~~~ 290 (353)
---.... .....++..+. ..|+++|.++ +|...
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii-~E~~~ 155 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLII-IEHSK 155 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEE-EEEET
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEE-EEecC
Confidence 8665431 11366777776 6788777655 55543
No 271
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.17 Score=45.20 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecchHHHhhCC----CC------------------------CCeeE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQPHVIEHAP----LH------------------------PHIEH 237 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~----~~------------------------~rv~~ 237 (353)
.....+|+.+|||.-.....|...+ +.++++-+|.|++++..- +. ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999987 788999999987765321 10 24455
Q ss_pred EeCCCCC--CCC-----C----C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccc
Q 018576 238 VAGDMFQ--SVP-----K----G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNS 304 (353)
Q Consensus 238 ~~~d~~~--~~p-----~----~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~ 304 (353)
+..|..+ .+. . . -++++--+|-++..++...+++.+..... .+.+++.|.+.+.++ +..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence 5555542 110 0 1 45666678888888888899999888765 678888998876642 212
Q ss_pred ccchhhhhhCC-C-------CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 305 HIDVLMMTQNP-G-------GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 305 ~~~~~~~~~~~-~-------g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.|..++. . -...|.+..++-+.++||+.+.+.++
T Consensus 237 ----vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 ----VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ----HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 2222110 0 12247888888899999998887654
No 272
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.68 E-value=0.031 Score=50.55 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=52.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 244 (353)
..++++.+. ..++..++|.-+|.|+.+..+++.+|+.+++++|. +.+++.+++. +|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456677666 56677999999999999999999998899999999 7777776542 477777777654
No 273
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.68 E-value=0.013 Score=52.70 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=47.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
-+.|++.|.+.. +|.|+.|||+.+|+ +..-+.|+|..|+..|++.++. ..++|++.+.
T Consensus 30 al~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~ 87 (274)
T PRK11569 30 GLKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG----ELGHWAIGAH 87 (274)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEecCHH
Confidence 355777777643 58999999999999 8999999999999999999752 2578988754
No 274
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.64 E-value=0.013 Score=52.12 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=46.9
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ +++.|.+.+..
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~----~~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG----ESEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEecHHH
Confidence 4566777664 48999999999999 8999999999999999999862 25789888554
No 275
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.61 E-value=0.014 Score=52.26 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=47.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
-+.|++.|...+ .+.|+.|||+.+|+ +..-+.|+|..|+..|+|.++. ..+.|.+...
T Consensus 27 ~l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~ 84 (271)
T PRK10163 27 GIAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS----QLGWWHIGLG 84 (271)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEEecHH
Confidence 355777777643 47999999999999 8999999999999999998862 2577988754
No 276
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=95.61 E-value=0.017 Score=49.29 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=51.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec---cCCCCccceecccccccccC
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~---~~g~~~~~y~~t~~~~~l~~ 107 (353)
+..|+..|... ++.|+.+||+.+++ ++..+++.|+.|+..|+|.+.. ..|.-...|.+|+.+.....
T Consensus 3 r~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 3 KEDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 34577777765 48999999999999 9999999999999999998762 12222234788877775553
No 277
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.61 E-value=0.016 Score=51.76 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l 105 (353)
--+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ .++.|++++....+
T Consensus 12 ral~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~----~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 12 RGLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA----SDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec----CCCcEEEcHHHHHH
Confidence 3456777777643 36999999999999 8999999999999999999863 25679998655433
No 278
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.58 E-value=0.029 Score=43.29 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceecccccccccC
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYVP 107 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~~ 107 (353)
..+..++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|++.+... .-.-.+.+|+.|..+..
T Consensus 28 ~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3455688888775 48999999999999 8889999999999999999873110 01225788877776653
No 279
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.58 E-value=0.046 Score=45.85 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC---------CCeeEEeCCCCC-CC----C------CC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH---------PHIEHVAGDMFQ-SV----P------KG 249 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~rv~~~~~d~~~-~~----p------~~ 249 (353)
+..+|+.+|||-=.....+....++++++-+|.|++++..++. .+++++..|+.+ .+ . ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4459999999999999999988889999999999988765542 236789999986 21 1 12
Q ss_pred -cEEEeccccccCCchHHHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNC 273 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~ 273 (353)
-++++-.++.+++.+++.++|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 678888999999999888888876
No 280
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.48 E-value=0.043 Score=51.36 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC---CC-cEEEecccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP---KG-DAIFLKWIL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p---~~-D~i~~~~~L 258 (353)
..+|||.-||+|..++.++.+.++ -+++..|. +..++.++++ .++.+..+|+...+. .. |+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998754 47899998 6666655442 357888888876222 23 9988854 3
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..+ ..++..+.+.+++||.|.+.-
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEEe
Confidence 211 367888889999999999973
No 281
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.33 E-value=0.017 Score=40.02 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=36.6
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.|... +..|++|||..+++ ++..++.+|+.|+..|.|.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 55677775 58999999999999 999999999999999999987
No 282
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.32 E-value=0.024 Score=49.29 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCCCCCCC--cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQSVPKG--DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~ 260 (353)
+.+.+|+|||||.-=++.-.....|+..+++.|+ ..+++.... ..+.+....|.....|.. |+.++--++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999888888888999999999 555554433 256778888998855543 99999999998
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+..+.. ..--++.+.++ .-.++|..++.
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 754443 33333444444 24666666553
No 283
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.31 E-value=0.038 Score=49.92 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=47.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMF 243 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~ 243 (353)
..++++.+. ..+...++|.--|.|+++..+++++|+.+++++|. |.+++.++++ +|+.++..+|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777776 66778999999999999999999999999999999 7888776543 57777777764
No 284
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=95.28 E-value=0.024 Score=48.33 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=49.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec-cC--CCCccceeccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL-DG--SGARRRYSLNSVSKY 104 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~-~~--g~~~~~y~~t~~~~~ 104 (353)
+-.|...|.++ +|+|+.|||+.+|+ ++..+++.|+.|++.|++.... +. |.-.-.|++|..+..
T Consensus 13 r~~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 13 RERILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 33466677766 59999999999999 9999999999999999998763 12 222234888877665
No 285
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.24 E-value=0.024 Score=48.00 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CCCC-cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VPKG-DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p~~-D~i~~~~~ 257 (353)
....|+|.-||.|+.++.++.++| .++.+|. |.-+.-|+.. +||.|++||+++- +.-+ |.+.+.+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 467899999999999999999987 4666666 4445555542 7999999999872 2222 44444443
Q ss_pred cccCC-chHHHHHHHHHHHhCCCCC
Q 018576 258 LHDWD-DEHCLKLLKNCYKSVPEDG 281 (353)
Q Consensus 258 Lh~~~-~~~~~~~L~~~~~~L~pgG 281 (353)
--.|+ ......-+-.+...+.|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 33344 2334444555566666653
No 286
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=95.21 E-value=0.021 Score=39.06 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=43.8
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCC--cCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDA--PTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~--~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
|++.|.+++ +|++..+|++.++.. ..+ +..|+|.|++|...|++.+. | ...+.+|+.|.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~~---g--~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRKV---G--RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCcccc---C--CcccccCHHHH
Confidence 566777754 699999999999762 223 58899999999999977754 2 34456777654
No 287
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=95.15 E-value=0.029 Score=45.37 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++.|+++||+..++ ++..+++++..|...|+|+-. .|. ++.|+|+..
T Consensus 24 ~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~--rG~-~GGy~Lar~ 70 (150)
T COG1959 24 GPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSV--RGK-GGGYRLARP 70 (150)
T ss_pred CcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEee--cCC-CCCccCCCC
Confidence 48999999999999 999999999999999999986 343 677887743
No 288
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=95.09 E-value=0.026 Score=41.84 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+|++.+++ ++..+.+.|+.|+..|+|++... .+.....|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 356677778765 37999999999999 89999999999999999997621 011122466665554433
No 289
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.04 E-value=0.018 Score=38.73 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=39.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..++..|...++ .+.|+.+||+.+++ ++..+.+.++.|+..|+|++.
T Consensus 6 ~q~~vL~~l~~~~~-~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 6 SQFRVLMALARHPG-EELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHHSTT-SGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34556677777531 12899999999999 999999999999999999987
No 290
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.01 E-value=0.035 Score=41.49 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ 222 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 222 (353)
.+....+|||||.|.+.--|.+. +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45678999999999988877775 667899996
No 291
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.98 E-value=0.081 Score=50.45 Aligned_cols=98 Identities=15% Similarity=0.247 Sum_probs=64.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeE---EEecchHHHhhCCCCCCeeEEeCCCCC---CCCCC-cEEEecccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKG---INFDQPHVIEHAPLHPHIEHVAGDMFQ---SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~rv~~~~~d~~~---~~p~~-D~i~~~~~Lh~ 260 (353)
...-++|+|..+|.|+|+.+|... | +-+ +-.+-+..+...-.+ .+-=+-+|..+ -+|.. |++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 345689999999999999999763 3 222 222222222222221 11122234444 35666 99999988887
Q ss_pred CCch-HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDDE-HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~~-~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+.+. +...+|-++-|.|||||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6533 356999999999999999999764
No 292
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=94.89 E-value=0.041 Score=45.20 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+|.|+++||+.+++ ++..++++|+.|...|+|... .|. ++.|.+.
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~--rG~-~GGy~La 68 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV--RGP-GGGYLLG 68 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC--CCC-CCCeecc
Confidence 48999999999999 999999999999999999974 332 5668766
No 293
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.79 E-value=0.038 Score=44.28 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|+++||+.+++ .+..+.+.|+.|...|+|.+. ....|.+|+.|..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~-----~~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE-----KYRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe-----cCceEEECHHHHHHH
Confidence 58899999999999 999999999999999999975 146689998886543
No 294
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=94.67 E-value=0.049 Score=43.20 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|.++||+.+++ ++..++++|+.|...|++... .|. ++.|.++.
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~--~G~-~Ggy~l~~ 69 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV--RGP-GGGYQLGR 69 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE--eCC-CCCEeccC
Confidence 48999999999999 999999999999999999864 232 45687663
No 295
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.62 E-value=0.13 Score=41.30 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..|+..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.+
T Consensus 41 ~q~~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~ 88 (144)
T PRK11512 41 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP 88 (144)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc
Confidence 344557777654 48999999999999 9999999999999999999973
No 296
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.54 E-value=0.076 Score=47.07 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=68.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecch-HHHhhCCC----------CCCeeEEeCCCCC---CCCCC--c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQP-HVIEHAPL----------HPHIEHVAGDMFQ---SVPKG--D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~~-~~~~~a~~----------~~rv~~~~~d~~~---~~p~~--D 250 (353)
.+++.++|-||+|.|.+++..++. +.+ ++..+|.. .+++..++ .++|.+.-||-+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 467899999999999999998886 655 45667763 34444333 2789999998765 34344 8
Q ss_pred EEEeccccccCCc--hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDD--EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~--~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|+.-..=-..+. ---..++.-+.++|||||+++++..+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 7765422111110 012356677889999999999987543
No 297
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=94.48 E-value=0.034 Score=40.72 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=46.8
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
|+..|.. ||....||.+.+ ++ .+..+.+-|+.|.+.|++++.... ....-.|.+|+.|..+.
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4455665 499999999999 89 999999999999999999987321 11124599998888766
No 298
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.47 E-value=0.22 Score=43.52 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC------------CCeeEEeCCCCC------CCCC-Cc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH------------PHIEHVAGDMFQ------SVPK-GD 250 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~rv~~~~~d~~~------~~p~-~D 250 (353)
...+||++|+|+|..++..+. ....+++.-|.+..+...... ..+.....+-.. -.|. .|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467999999999955554444 457889999986655433211 134333332222 1233 59
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|+.+.+++. +.....++..++..|..++.+++.-...
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999976 3445678888888999888665555443
No 299
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=94.45 E-value=0.028 Score=37.36 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=39.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
++.++..|... ++.|..+||+.+++ ++..+.++++-|+..|++++..
T Consensus 5 q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 44556667776 48999999999999 9999999999999999999873
No 300
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=94.45 E-value=0.048 Score=47.77 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
.++...-|..|+-.|.+ ||+|.+||-..+++ .+..+..-|+-|...|++.++ ++.|++|..|..++
T Consensus 8 ~if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~------~~~Y~LS~~G~iiv 73 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE------GDRYSLSSLGKIIV 73 (260)
T ss_pred HHHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec------CCEEEecchHHHHH
Confidence 35566788899999999 59999999999999 889999999999999999986 78999998888766
Q ss_pred CC
Q 018576 107 PN 108 (353)
Q Consensus 107 ~~ 108 (353)
.+
T Consensus 74 ~k 75 (260)
T COG4742 74 EK 75 (260)
T ss_pred HH
Confidence 43
No 301
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.44 E-value=0.05 Score=42.87 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+|.|.++||+.+++ ++..++++|+.|...|++... .| .++.|.++.
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~--~g-~~ggy~l~~ 69 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESV--RG-PGGGYRLAR 69 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec--cC-CCCCccCCC
Confidence 48999999999999 999999999999999999864 22 145677653
No 302
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.44 E-value=0.082 Score=45.07 Aligned_cols=102 Identities=22% Similarity=0.233 Sum_probs=70.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC------C---eEEEecchHHHhhCCCCCCeeEEeCCCCCCC----
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY------I---KGINFDQPHVIEHAPLHPHIEHVAGDMFQSV---- 246 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~---~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~---- 246 (353)
++-+.|.-+.+..|++|+....|.++..+.++.-. - +++.+|+..|.. .+.|..+++|+..+-
T Consensus 31 qideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~ 106 (294)
T KOG1099|consen 31 QIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEA 106 (294)
T ss_pred hhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHH
Confidence 34444543466789999999999999988886521 1 278899854432 367888889987621
Q ss_pred -----C--CCcEEEecc-----ccccCCch----HHHHHHHHHHHhCCCCCEEEE
Q 018576 247 -----P--KGDAIFLKW-----ILHDWDDE----HCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 247 -----p--~~D~i~~~~-----~Lh~~~~~----~~~~~L~~~~~~L~pgG~l~i 285 (353)
. .+|+|++-. -||++++- -....|.-...+|+|||.++-
T Consensus 107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 1 139998864 47877522 133566777789999999874
No 303
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=94.40 E-value=0.068 Score=35.36 Aligned_cols=44 Identities=16% Similarity=0.340 Sum_probs=39.6
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|++.|... +.+|+++||+.+++ .+.-++|=|..|+..|++.+.
T Consensus 4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 366777776 58999999999999 999999999999999999987
No 304
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=94.32 E-value=0.061 Score=39.06 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=53.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHH----------HHhcccce-eeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILR----------LLASYSVV-ECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~----------~L~~~g~l-~~~~~~g~~~~~y~~t 99 (353)
.=++..|+..|.+..| .+.++.|||+.+++ ++..+..-|+ .|+.+|+| .+...+| ...|++|
T Consensus 8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g--~k~Y~lT 80 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGG--FKYYRLT 80 (90)
T ss_pred HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCC--eeEEEeC
Confidence 5577888999988644 58999999999999 8888887775 58999999 4443333 4689999
Q ss_pred ccccccc
Q 018576 100 SVSKYYV 106 (353)
Q Consensus 100 ~~~~~l~ 106 (353)
+.+..+.
T Consensus 81 ~~G~~~~ 87 (90)
T PF07381_consen 81 EKGKRIA 87 (90)
T ss_pred hhhhhHH
Confidence 8877543
No 305
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=94.20 E-value=0.072 Score=41.02 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=46.2
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+.+--.+-|+..|... +|.|+.|+|+.+|- +...+.|-|+.|+..|++..+
T Consensus 59 a~vLsp~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 59 ARVLSPRNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HHHhChhHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 344445667788889886 59999999999999 999999999999999999987
No 306
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.07 E-value=0.059 Score=34.96 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=35.1
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHH
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L 77 (353)
-.+|.+|++.|-|+.=.+ .|+++||+.+|+ .+..+...||--
T Consensus 6 ~e~L~~A~~~GYfd~PR~------~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 6 REILKAAYELGYFDVPRR------ITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHcCCCCCCCc------CCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 468999999999998755 699999999999 777777777643
No 307
>PRK06474 hypothetical protein; Provisional
Probab=94.07 E-value=0.085 Score=43.99 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=56.7
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSV 101 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~ 101 (353)
..+|.-..++.|++.|...+ ++.|+.+|++.+ ++ ...-+.|.|+.|+..|+|..... .|.....|+++..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~ 78 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE 78 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence 45677778999999998753 259999999999 67 77889999999999999998742 1222456888876
Q ss_pred cccc
Q 018576 102 SKYY 105 (353)
Q Consensus 102 ~~~l 105 (353)
+..+
T Consensus 79 ~~~~ 82 (178)
T PRK06474 79 DAKI 82 (178)
T ss_pred eeee
Confidence 5544
No 308
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.04 E-value=0.14 Score=47.02 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC---CCcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP---KGDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p---~~D~i~~~~~ 257 (353)
..+.+|||.=+|.|.+++.+++.-.. +++.+|+ |..++..+++ .++..+.||...-.+ .+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34789999999999999999987533 3999999 7777655442 558999999987333 3599999866
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
-. ..+++..+.+.+++||.+...+.+..+
T Consensus 266 ~~------a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 KS------AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred Cc------chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 42 246777888888899999998887544
No 309
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=0.22 Score=39.46 Aligned_cols=106 Identities=16% Similarity=0.266 Sum_probs=69.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
+++++-++ -.+..+.+|+|+|.|....+.++.. -.+.+++++ |..+..++-+ .+.+|...|+++ ++..-
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34455454 3445899999999999988877764 457789998 5555555432 568899999887 55432
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.++++. .++-...+-.+++.-|+.+.+++-.-+-.|.
T Consensus 140 ~~vviFg------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG------AESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 333322 1122334556677788888888877665443
No 310
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=94.02 E-value=0.082 Score=42.86 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=44.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.+..+||+.+++ .+.-+...++-|...|++.+.+ .+.+.+|+.|....
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~~-----y~gi~LT~~G~~~a 72 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYEP-----YGGVTLTEKGREKA 72 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEec-----CCCeEEChhhHHHH
Confidence 58999999999999 9999999999999999999973 56799998887554
No 311
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.97 E-value=0.22 Score=41.54 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCC---CC-C--CcEEEec
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQS---VP-K--GDAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p-~--~D~i~~~ 255 (353)
.+.++||+=+|+|.++.+.+.+. ..+++.+|. ...+...++ ..+++++..|.... .+ . -|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 47899999999999999999885 347888887 334433332 36788888888741 11 2 2999998
Q ss_pred cccccCCchHHHHHHHH--HHHhCCCCCEEEEEee
Q 018576 256 WILHDWDDEHCLKLLKN--CYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~--~~~~L~pgG~l~i~e~ 288 (353)
--.+. .--+....+.. -...|+|+|.+++-..
T Consensus 122 PPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 77762 11111222222 4567999888876443
No 312
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=93.96 E-value=0.13 Score=42.82 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=41.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
...|+++|... |++|.++||..+|+ +...++++|..|...|++.+.
T Consensus 24 ~~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 24 GFEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HhHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 34488888886 59999999999999 999999999999999999965
No 313
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.93 E-value=0.075 Score=50.70 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=63.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC--CCC---
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ--SVP--- 247 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p--- 247 (353)
...+.+. ..+..+++|+=||.|.++..++++ -.++++++. +++++.|++. ++++|..++.++ +..
T Consensus 284 ~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 284 TALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 3444444 456789999999999999999965 458899998 7777766542 569999999876 221
Q ss_pred CC-cEEEeccccccCCchHHH-HHHHHHHHhCCCCCEEEE
Q 018576 248 KG-DAIFLKWILHDWDDEHCL-KLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~~~~~~~-~~L~~~~~~L~pgG~l~i 285 (353)
.. |.|+.- -|..-+. .+++.+. .++|...++|
T Consensus 361 ~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 361 YKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred CCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEE
Confidence 12 777664 2222222 4444443 4455555554
No 314
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.84 E-value=0.28 Score=39.76 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCC
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSG 91 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~ 91 (353)
.+..+...-.....-..+. -|+..+... ++.|..+||+.+++ ++..+.++++.|...|++.+.+
T Consensus 22 ~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~---- 85 (152)
T PRK11050 22 GFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRP---- 85 (152)
T ss_pred HHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec----
Confidence 4555544443333333332 355566654 48999999999999 9999999999999999998752
Q ss_pred Cccceecccccccc
Q 018576 92 ARRRYSLNSVSKYY 105 (353)
Q Consensus 92 ~~~~y~~t~~~~~l 105 (353)
...+.+|+.|..+
T Consensus 86 -~~~v~LT~~G~~l 98 (152)
T PRK11050 86 -YRGVFLTPEGEKL 98 (152)
T ss_pred -CCceEECchHHHH
Confidence 3457777666544
No 315
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=93.79 E-value=0.11 Score=44.29 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.-++|...++..|++.|... +|+.+.|||+++|+ .+.-+..-+..|+..|+++.+.
T Consensus 16 v~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeeee
Confidence 44678889999999999987 59999999999999 8889999999999999999764
No 316
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.77 E-value=1.2 Score=42.55 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=73.2
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecchH-HHh-----hCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-VIE-----HAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWD 262 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~-----~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~ 262 (353)
.+++-+|||.-.+...+-+.. --.++-+|.+. +++ .++.++...+...|+.. .++.. |+++...+|+++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 499999999998887776642 12455566522 222 22445778999999988 77754 9999999999864
Q ss_pred chH--------HHHHHHHHHHhCCCCCEEEEEeee--cCCCC
Q 018576 263 DEH--------CLKLLKNCYKSVPEDGKVIVVELM--LPEVP 294 (353)
Q Consensus 263 ~~~--------~~~~L~~~~~~L~pgG~l~i~e~~--~~~~~ 294 (353)
.++ +...+.++.++|+|||+.+.+... .|..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCC
Confidence 222 335689999999999999998884 45443
No 317
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.68 E-value=0.18 Score=46.61 Aligned_cols=108 Identities=16% Similarity=0.299 Sum_probs=74.8
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc---hHHHhhC-------------CCCCCeeEEeCCCCC
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ---PHVIEHA-------------PLHPHIEHVAGDMFQ 244 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a-------------~~~~rv~~~~~d~~~ 244 (353)
+++.+. ........|+|+|.|.....++.....-.-+|+.+ |.-++.. ++...++++.++|..
T Consensus 184 i~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 344444 56778999999999999887776554445566664 3222211 112458899999987
Q ss_pred C------CCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 245 S------VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 245 ~------~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+ ++++++|+.+++..+ ++...=+.++..-+++|.+++-.++..+.
T Consensus 263 ~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred HHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecccccccc
Confidence 3 234599999999743 44444455999999999999999988763
No 318
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=93.63 E-value=0.41 Score=38.26 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=45.1
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
++..|...+ ++.|..+||+.+++ ++..+.+.++-|+..|+|++.+.+. .-.-...+|+.|..+.
T Consensus 36 vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence 566666532 26899999999999 9999999999999999999973111 0012245555555443
No 319
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=93.58 E-value=0.11 Score=33.21 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=37.3
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+++.|... ++.|+.+|++.+++ .+.-+.+.|+.|...|++.+.
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45555554 47999999999999 999999999999999999976
No 320
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=93.43 E-value=0.14 Score=34.12 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.|..+|++.+++ +..-+.+.|+.|...|++...
T Consensus 9 ~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 9 GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 48999999999999 889999999999999999976
No 321
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=93.41 E-value=0.12 Score=44.19 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=48.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.|+.|...|++.+.. + ....|.+|+.|
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~--~-r~~~~~lT~~G 203 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG--R-KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc--C-CccEEEeCCCC
Confidence 455677788775 37899999999999 8999999999999999999872 1 24668888654
No 322
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=1.2 Score=41.53 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=68.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhC----CCC--CCeeEEeCCCCC---CCCC---CcEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHA----PLH--PHIEHVAGDMFQ---SVPK---GDAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a----~~~--~rv~~~~~d~~~---~~p~---~D~i 252 (353)
..++.+|||..++.|+=+.++++..++ ..++.+|. +.-+... ++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567799999999999999999998875 56689997 3333322 221 335666666542 1121 2544
Q ss_pred Ee-------------ccccccCCchH-------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 253 FL-------------KWILHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 253 ~~-------------~~~Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
++ ..+...++..+ -.++|..+.+.|||||.|+-......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 33 12333444332 23789999999999999999887654
No 323
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=93.33 E-value=0.15 Score=35.18 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=38.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.++..|.+ ++.|.++||+.+++ ....+++.++.|.+.|+....
T Consensus 2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~ 46 (69)
T TIGR00122 2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT 46 (69)
T ss_pred hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3557778887 48899999999999 999999999999999996654
No 324
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.22 E-value=0.059 Score=50.19 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=42.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDM 242 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~ 242 (353)
+..+++.++ ..+. .|||+=||.|.++..+++.. -++++++. +++++.|++. .+++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 444555555 4433 89999999999999999875 47999998 7777777642 6788887765
No 325
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=0.095 Score=50.02 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=44.3
Q ss_pred ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC
Q 018576 187 GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ 244 (353)
Q Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 244 (353)
+++....+||+-||||.++..+++.. .+++|+++ |+.++-|+.. .+.+|++|-.++
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 36777999999999999999999874 57888887 7777766653 578999984443
No 326
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=93.11 E-value=0.14 Score=35.38 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=43.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+..|+..+... +.+..+|++.+++ +..-+.+.|+.|.+.|++.... ++ ....|.+++
T Consensus 9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~-~~-~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRR-EG-RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEE-ec-cEEEEEeCC
Confidence 44566666663 5899999999999 8999999999999999999762 22 235566664
No 327
>PHA02943 hypothetical protein; Provisional
Probab=92.83 E-value=0.15 Score=40.34 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=42.9
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.|++.|.. |+.|..|||+++|+ +...++-.|..|+..|.+.+.. -|. -..|.+.+
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~-~G~-~tyw~l~~ 69 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVE-IGR-AAIWCLDE 69 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEe-ecc-eEEEEECh
Confidence 45666633 58999999999999 8999999999999999999983 332 35555543
No 328
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.83 E-value=1 Score=41.90 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=67.0
Q ss_pred ccCCCCeEEEEcCCchHHHHHHHHHCCCC---------------------------------------eEEEecc-hHHH
Q 018576 187 GFANIKQLVDVGGNLGVTLQAITSKYPYI---------------------------------------KGINFDQ-PHVI 226 (353)
Q Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~ 226 (353)
+|.....++|==||+|+++++.+...+++ .+++.|. +.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 36667899999999999999988776531 2679998 7788
Q ss_pred hhCCCC-------CCeeEEeCCCCC-CCC-CC-cEEEeccc--cccCCchH-HH----HHHHHHHHhCCCCCEEEEEe
Q 018576 227 EHAPLH-------PHIEHVAGDMFQ-SVP-KG-DAIFLKWI--LHDWDDEH-CL----KLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 227 ~~a~~~-------~rv~~~~~d~~~-~~p-~~-D~i~~~~~--Lh~~~~~~-~~----~~L~~~~~~L~pgG~l~i~e 287 (353)
+.|+.+ +.|.|.++|+.. .-| +. |+|+++-- .. +.+.. +. .+.+.+++.++.-++.+++.
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 777653 669999999986 333 34 99988733 21 22222 22 34445555555556666654
No 329
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=92.76 E-value=0.15 Score=41.41 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|+.+||+..++ ++..++++|..|...|++.-. -|. ++.|.++.
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~--rG~-~GGy~La~ 68 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETV--RGR-NGGVRLGR 68 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee--cCC-CCCeeecC
Confidence 47899999999999 999999999999999999976 343 67787763
No 330
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.76 E-value=0.12 Score=34.51 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.+..+||+.+++ .+.-+...++-|...|+++++
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 59999999999999 999999999999999999987
No 331
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=92.64 E-value=0.12 Score=39.21 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=41.2
Q ss_pred HHHhChhhhhh--hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 32 VYELGIFQIID--KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 32 a~~lglf~~L~--~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..+..++..|. ... +++.|..+||+.+++ ++..+.+.++.|+..|++.+.+
T Consensus 25 ~~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~ 77 (109)
T TIGR01889 25 LEELLILYYLGKLENN-EGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKER 77 (109)
T ss_pred HHHHHHHHHHHhhhcc-CCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccC
Confidence 34555666666 211 148999999999999 9999999999999999999873
No 332
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=92.61 E-value=0.16 Score=40.60 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.+.|.++||+..|+ ++..+++.|+.|...|+++.. .|. ++.|.++
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~--~G~-~GG~~l~ 68 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAV--RGK-NGGIRLG 68 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEe--cCC-CCCeeec
Confidence 47899999999999 999999999999999999986 332 4667665
No 333
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=92.55 E-value=0.21 Score=32.84 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=31.8
Q ss_pred CC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+ |..+||+.+++ +...+++.|+.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 55 89999999999 999999999999999999876
No 334
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=92.54 E-value=0.097 Score=47.00 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC----CC--cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP----KG--DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p----~~--D~i~~ 254 (353)
.+.+|||+=|=||.++...+.. ...+++.+|. ...++.++++ ++++++..|+++.+. .+ |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987653 3458999998 5566655542 579999999987322 12 99976
Q ss_pred ccc-c--ccCC-chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 255 KWI-L--HDWD-DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 255 ~~~-L--h~~~-~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
--- + ..+. .....++++.+.+.|+|||.|++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 311 0 0111 23456899999999999999886554
No 335
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=92.47 E-value=0.14 Score=40.24 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=37.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
++.|+.|||+.+++ ++..+.+.|+.|...|++... .| ..+.|.+.
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~--~g-~~ggy~l~ 68 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSK--RG-VEGGYTLA 68 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec--CC-CCCChhhc
Confidence 58999999999999 999999999999999999864 22 14557664
No 336
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=92.46 E-value=0.15 Score=38.55 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=41.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 456788888886 48999999999999 99999999999999999984
No 337
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=92.44 E-value=0.09 Score=30.12 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.1
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
|+|-+|||+.+|+ ..+-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5799999999999 999999999999998875
No 338
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=92.26 E-value=0.25 Score=37.84 Aligned_cols=63 Identities=27% Similarity=0.383 Sum_probs=44.9
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCC-CCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKN-KDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~-~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-|++.|...+ ++.|++||.+.+.-.. +.+..-+-|.|+.|+..|++.+...++ ....|.++
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~-~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGD-GKARYELN 66 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCC-CceEEEeC
Confidence 455788887643 5899999999984211 127888999999999999999873222 13566554
No 339
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=92.24 E-value=0.56 Score=44.06 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=61.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchH----HHHHHHHHC---CCCeEEEecchH-----HHhhCCCC-------CC--eeE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGV----TLQAITSKY---PYIKGINFDQPH-----VIEHAPLH-------PH--IEH 237 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~~~-------~r--v~~ 237 (353)
..|++.+. -.+...|+|+|.|.|. +...|+.+. |.+++|+++.|. .++.+.++ -+ ++|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 45667666 4567899999999985 444566553 678999999832 22222221 12 334
Q ss_pred EeC--CCCCCC-------CCC--cEEEeccccccCCch------HHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 238 VAG--DMFQSV-------PKG--DAIFLKWILHDWDDE------HCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 238 ~~~--d~~~~~-------p~~--D~i~~~~~Lh~~~~~------~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
... +-.+.+ ..+ =+|-+.+.||++.++ ....+|+.++ .|+|. .++++|.-
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~-vvv~~E~e 245 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK-VVVLVEQE 245 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC-EEEEEeec
Confidence 331 211111 113 344566777888632 2345777665 67886 44455543
No 340
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.87 E-value=4.3 Score=35.34 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCCCCCC---C--cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQSVPK---G--DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~---~--D~i~~~~~L 258 (353)
.+.+||-||-..- .+++++...+..+++++|+ ..+++..++ .-.|+.+..|+..++|+ + |+++.--.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 4689999996654 3444445555679999998 444443322 12499999999998885 2 99888744
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEE
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l 283 (353)
++.+-..-++.+..++||..|..
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-E
T ss_pred --CCHHHHHHHHHHHHHHhCCCCce
Confidence 34466789999999999965533
No 341
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.83 E-value=0.99 Score=43.45 Aligned_cols=125 Identities=18% Similarity=0.276 Sum_probs=79.8
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccC--CCCeEEEEcCCchHHHHHHHHHC----CCCeEEEecc-hHH
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFA--NIKQLVDVGGNLGVTLQAITSKY----PYIKGINFDQ-PHV 225 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~ 225 (353)
++-+++++-....|.++. .+.+.+..+.-+ ....|.-+|+|.|-+..+.++.- -.++...++- |..
T Consensus 335 YetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA 407 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA 407 (649)
T ss_pred hhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch
Confidence 555666766556666544 446666655222 35688999999998777655532 2455666664 444
Q ss_pred HhhCCC------CCCeeEEeCCCCC-CCC-C-CcEEEeccccccCCchH-HHHHHHHHHHhCCCCCEEEE
Q 018576 226 IEHAPL------HPHIEHVAGDMFQ-SVP-K-GDAIFLKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 226 ~~~a~~------~~rv~~~~~d~~~-~~p-~-~D~i~~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i 285 (353)
+-..+. ..+|+++..|+.+ .-| + +|++++- .|--+.|.+ ....|.-+...|||+|.-+=
T Consensus 408 ivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 408 IVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 332222 1689999999988 444 3 3877654 333444444 45789999999999976653
No 342
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.74 E-value=0.45 Score=42.57 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=53.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 244 (353)
..+.++.+. ..+....+|.-=|.|+++..+++++|.. +.+++|. |.+++.|++. +|+.++..+|.+
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 445666666 6667999999999999999999999865 5999999 8888888763 588888877653
No 343
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=91.64 E-value=0.091 Score=38.42 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccC
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~ 107 (353)
++....-|.-.+++ +....+.+++.|+..|++... ++| ....|.+|+.|..++.
T Consensus 30 ~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~-~~~-~~~~y~lT~KG~~fle 83 (95)
T COG3432 30 GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ-DNG-RRKVYELTEKGKRFLE 83 (95)
T ss_pred CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec-cCC-ccceEEEChhHHHHHH
Confidence 57888899999999 999999999999999966665 233 2447999999887753
No 344
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=91.49 E-value=0.21 Score=33.97 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-|-|+.|||+.+|++ ++..+.+.|+.|+..|++++.
T Consensus 24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 366999999999993 488999999999999999986
No 345
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=91.43 E-value=0.21 Score=40.71 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|+++|..+ +.+|-++||..+|+ +..-++++|..|...|++.+.
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 4578888765 58999999999999 999999999999999999754
No 346
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=91.28 E-value=0.31 Score=34.19 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=39.2
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
|=|.|... |..++.+||..+++ +++.++.+|..|+..|-+++.+
T Consensus 7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence 44677776 58999999999999 9999999999999999999873
No 347
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=91.07 E-value=0.23 Score=42.61 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
...|..+||+.+++ ++..+.|.|+.|...|++++.. +. ....+.+|+.|..++
T Consensus 20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~-~~-r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTI-VP-RGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEE-cC-CceEEEECHHHHHHH
Confidence 36899999999999 9999999999999999999873 22 246677887776555
No 348
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=91.02 E-value=0.33 Score=31.61 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=33.1
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhccc
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYS 81 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g 81 (353)
.|+..|...+ +++|.++||+.+++ +.+-+++-++.|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 4566774432 47999999999999 9999999999999999
No 349
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=90.97 E-value=0.57 Score=31.42 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|..+||+.+++ +...+++.|..|+..|+++..
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~ 58 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVERR 58 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 459999999999 899999999999999999875
No 350
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=90.41 E-value=0.72 Score=38.62 Aligned_cols=46 Identities=17% Similarity=-0.033 Sum_probs=40.0
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..++..|... ++.|..+||+.+++ +..-+.++++-|+..|+|.+.+
T Consensus 48 ~~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~ 93 (185)
T PRK13777 48 HHILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK 93 (185)
T ss_pred HHHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC
Confidence 4667777765 48999999999999 8888999999999999999873
No 351
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.41 E-value=5.3 Score=32.85 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=74.9
Q ss_pred EEcCCchHHHHHHHHHCC-C--CeEEEecchH-HHhhCCC---------CCCeeE-EeCCCCC--CCC---CC--cEEEe
Q 018576 196 DVGGNLGVTLQAITSKYP-Y--IKGINFDQPH-VIEHAPL---------HPHIEH-VAGDMFQ--SVP---KG--DAIFL 254 (353)
Q Consensus 196 DvG~G~G~~~~~l~~~~p-~--~~~~~~D~~~-~~~~a~~---------~~rv~~-~~~d~~~--~~p---~~--D~i~~ 254 (353)
=||=|.=.++..|++.++ . +-+|.+|..+ +.+.-.. ..++.. ...|..+ ... .. |.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788889999999987 4 3457777633 3332221 133433 3346654 122 22 99998
Q ss_pred ccccccCC-----------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 255 KWILHDWD-----------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 255 ~~~Lh~~~-----------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
++-.-... ..-+..+|+.+...|+++|.+.|.-....+ ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 87654311 122458899999999999999985543221 1111
Q ss_pred HHHHHHHhcCCceeeEeeeC
Q 018576 324 EFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~~ 343 (353)
++.++.+++||..++..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 35577888999988887754
No 352
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=90.24 E-value=0.38 Score=35.51 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=37.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.++|..|||+.+|+ ++.-+.|.|+.|+..|+|.+. .| .+.|..+
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~--~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GM--MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cC--CceeecC
Confidence 38999999999999 999999999999999999975 22 3667665
No 353
>PRK05638 threonine synthase; Validated
Probab=89.92 E-value=0.37 Score=46.41 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=50.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCC--CCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLP--TKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~--~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|+..|.+ ++.+..||++.++ + .+..+.+.|+.|...|+|+...+.|. ...|++|+.+..++
T Consensus 373 r~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~-~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 373 KLEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGR-RVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCC-cEEEEECcHHHHHH
Confidence 5567777876 4899999999998 7 88899999999999999986322342 45689998776543
No 354
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=89.87 E-value=0.33 Score=35.69 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 52 ASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 52 ~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.+||+.+++ ++..+.+.++.|...|++.+.+ +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~-----~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP-----YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC-----CCceEechhHHHHH
Confidence 4689999999 9999999999999999999872 34688887766543
No 355
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=89.82 E-value=1.1 Score=34.64 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
-.+....+.+.+-|...+|+...+ |+.-..||.+.++ + .+..|.+-|+.|+..|++.+..-.
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~-------------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~ 73 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD-------------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYP 73 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc-------------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecC
Confidence 346777888888888888776543 2889999999998 9 999999999999999999987310
Q ss_pred -CCCccceeccccccccc
Q 018576 90 -SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 -g~~~~~y~~t~~~~~l~ 106 (353)
-.-.-.|++|+.|..+.
T Consensus 74 ~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 74 EEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred CCCceeEEEEhhhHHHHH
Confidence 01134588887776655
No 356
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.73 E-value=2.4 Score=38.96 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=65.0
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCC---CCCCCCC-CcEEEeccccccC
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGD---MFQSVPK-GDAIFLKWILHDW 261 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~i~~~~~Lh~~ 261 (353)
..++.+|+=+|.| .|..+.++++..- .+++++|. ++-.+.|++...-.++... ..+...+ .|+|+-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4567788888876 6688999999876 99999999 5567777776444555533 2222333 377766544 2
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+....+.|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 33666778999999999988763
No 357
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=89.34 E-value=0.26 Score=48.11 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=56.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDG 111 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~~ 111 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|.+.|++++..+ ....|.+|+.|..++....+
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~---~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER---VEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee---eEEEEEECHHHHHHHHhcCH
Confidence 456677788765 48999999999999 99999999999999999998721 24679999999987766543
No 358
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.28 E-value=3.3 Score=39.01 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=62.5
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEe---CC-CCCC---C-CC-C-cEEEec
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVA---GD-MFQS---V-PK-G-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d-~~~~---~-p~-~-D~i~~~ 255 (353)
.....+||.+|||. |..+..+++.....++++++. ++..+.+++.....++. .+ +.+. . +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45668999999998 889999999986546888876 66666665542223222 11 1111 1 11 3 766553
Q ss_pred c---------------ccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 W---------------ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~---------------~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
- +|+...+. ...++++.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 1 12222222 4578889999999999998854
No 359
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.25 E-value=0.57 Score=43.93 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCeeEEeCCCCC---CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 233 PHIEHVAGDMFQ---SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 233 ~rv~~~~~d~~~---~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
++|+++.+++.+ ..|.+ |.+++...+..++++...+.++++.++++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999998876 34444 9999999999999999999999999999999999997765443
No 360
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=89.11 E-value=0.46 Score=41.98 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=44.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS 90 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g 90 (353)
-+..+.+.|.+.| |..+-+||.+++|+ +..-+.|.|+-|+..|++++. |.|
T Consensus 196 ~e~~il~~i~~~G--Gri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~-K~G 246 (258)
T COG2512 196 DEKEILDLIRERG--GRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKE-KKG 246 (258)
T ss_pred HHHHHHHHHHHhC--CEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEE-EeC
Confidence 3456778888865 78999999999999 899999999999999999998 444
No 361
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=88.88 E-value=0.33 Score=46.65 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=59.2
Q ss_pred HHHhChhhhhhhcCCCCC-CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCC
Q 018576 32 VYELGIFQIIDKAGPGAK-LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKD 110 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~ 110 (353)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++...+ ....|.+|+.|..++....
T Consensus 3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~l~~G~ 72 (492)
T PLN02853 3 MAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI---KRETWVLTEEGKKYAAEGS 72 (492)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCC
Confidence 4577788888874 34 799999999999 99999999999999999998742 3688999999998887766
Q ss_pred C
Q 018576 111 G 111 (353)
Q Consensus 111 ~ 111 (353)
+
T Consensus 73 P 73 (492)
T PLN02853 73 P 73 (492)
T ss_pred H
Confidence 5
No 362
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.82 E-value=0.54 Score=42.40 Aligned_cols=71 Identities=14% Similarity=0.041 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCchHH-HHHHHHHCCCCeEEEecc-hHHHhhCCC--------CCCeeEEeC----CCCCCCC---CC-cE
Q 018576 190 NIKQLVDVGGNLGVT-LQAITSKYPYIKGINFDQ-PHVIEHAPL--------HPHIEHVAG----DMFQSVP---KG-DA 251 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~----d~~~~~p---~~-D~ 251 (353)
...++||||+|.... .+--++. .++++++.|+ +..++.|++ .++|+++.. +++..+- +. |+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 357999999997754 3333444 4899999998 667776654 257877654 3444221 22 89
Q ss_pred EEeccccccC
Q 018576 252 IFLKWILHDW 261 (353)
Q Consensus 252 i~~~~~Lh~~ 261 (353)
.+|+--+|.=
T Consensus 181 tmCNPPFy~s 190 (299)
T PF05971_consen 181 TMCNPPFYSS 190 (299)
T ss_dssp EEE-----SS
T ss_pred EecCCccccC
Confidence 9999888863
No 363
>PRK10870 transcriptional repressor MprA; Provisional
Probab=88.52 E-value=0.48 Score=39.43 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=47.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCC--ccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGA--RRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~--~~~y~~t~~~~~l~ 106 (353)
+..++..|...+ +++.|..+||+.+++ ++..+.++++-|+..|+|++.+ +..+ .-...+|+.|..++
T Consensus 57 q~~iL~~L~~~~-~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~-~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 57 LFMALITLESQE-NHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE-SDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHHHhcCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCCeeEEEECHHHHHHH
Confidence 345566665321 147899999999999 9999999999999999999973 2111 12355666665544
No 364
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=88.44 E-value=0.67 Score=35.63 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=44.9
Q ss_pred HHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 30 QAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 30 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..+...|.+...++ |..|+.|++..+|+ +-.-++++++.|++.|-|...
T Consensus 10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 456777888899987 59999999999999 999999999999999999875
No 365
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=88.40 E-value=0.51 Score=32.95 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.|-++||..+|+ ....+.|.|+.|...|++...
T Consensus 28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~ 61 (76)
T PF13545_consen 28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK 61 (76)
T ss_dssp ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 7899999999999 999999999999999999975
No 366
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=88.13 E-value=0.59 Score=37.89 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
..+..|++.|... +..|..+||+.+|+ .+..+.+=++-|...|++..
T Consensus 9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 3577889999986 59999999999999 99999999999999999984
No 367
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.98 E-value=0.15 Score=38.45 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred cEEEecccc----ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHH
Q 018576 250 DAIFLKWIL----HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEF 325 (353)
Q Consensus 250 D~i~~~~~L----h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 325 (353)
|+|+|-.|- -+|.|+-...+++++++.|+|||.+++--.-........ .......-++ ..-....+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~F 74 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQF 74 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTT---TS-HHHHHHH-----HH----GGGH
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHHH
Confidence 666665542 235688899999999999999999886322111110000 0000110011 1112345578
Q ss_pred HHHHHh--cCCceeeEeee
Q 018576 326 MTLATG--AGFSGIRSDLV 342 (353)
Q Consensus 326 ~~ll~~--aGf~~v~~~~~ 342 (353)
.++|.+ .||+.++....
T Consensus 75 ~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHTSTTT---EEEEE--
T ss_pred HHHHHhcccceEEEEEccc
Confidence 888877 69998876554
No 368
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=87.91 E-value=0.58 Score=38.11 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.|+|++||++++|+ ....+..-++-|...+++.+.=
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence 59999999999999 8899999999999999999873
No 369
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=87.87 E-value=0.53 Score=38.65 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=43.3
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
-..+..|+.+|.+. +..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 13 D~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34688899999986 59999999999999 99999999999999999984
No 370
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=87.47 E-value=1.1 Score=39.33 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=47.2
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
..+..++-.|-.- |+.|+.||++..|+ +...+-..|+.|...|++... .| .+..|+.-
T Consensus 16 ~yEa~vY~aLl~~---g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~--~g-~P~~y~av 73 (247)
T COG1378 16 EYEAKVYLALLCL---GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVI--EG-RPKKYRAV 73 (247)
T ss_pred HHHHHHHHHHHHh---CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEee--CC-CCceEEeC
Confidence 3455666667665 59999999999999 899999999999999999986 34 36778654
No 371
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=87.21 E-value=0.75 Score=37.10 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=43.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+..|+..|.+. ++.|..+||+.+|+ .+..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 3567788999986 58999999999999 999999999999999999875
No 372
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=87.11 E-value=0.61 Score=39.51 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=36.6
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.+... +.+.|++|+|+++|+ +..-++|.|.+|++.|++..+
T Consensus 163 i~~~~~~~--~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKEP--DQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhCc--CCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 44455521 259999999999999 889999999999999999875
No 373
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=87.09 E-value=0.68 Score=35.38 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=50.4
Q ss_pred HHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 30 QAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 30 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.+..+..++..|...+ +.+..+||+.+++ ++..+.++++-|+..|++.+..... .-.-.+.+|+.|..+.
T Consensus 20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 3456777788888753 4444899999999 9999999999999999999973110 0122466666666544
No 374
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.42 E-value=3.3 Score=35.90 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=69.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-----hHHHhhCCCCCCeeEEeCCCCCCCCC----C--cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-----PHVIEHAPLHPHIEHVAGDMFQSVPK----G--DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~p~----~--D~i~~~ 255 (353)
+....+||-+|.++|....++..-. |.--+..++. .+.+..|+++++|--+..|+..|..- + |+||+-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 5678999999999999888777655 5544555554 35677888888888888888765421 2 766543
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+-+ .++.+-+.-++.--||+||.++|.-...
T Consensus 234 -vaq---pdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 234 -VAQ---PDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred -CCC---chhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 322 2445666667888999999999865543
No 375
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=86.33 E-value=0.83 Score=36.25 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=46.2
Q ss_pred eEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC---CCCC-C-cEEEeccccccCC--c-------hHHHHHHHHH
Q 018576 216 KGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ---SVPK-G-DAIFLKWILHDWD--D-------EHCLKLLKNC 273 (353)
Q Consensus 216 ~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~-~-D~i~~~~~Lh~~~--~-------~~~~~~L~~~ 273 (353)
++.++|+ ++.++..+++ +|++++..+-.. .+++ . |+++++.- ++| | +.-...|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5788998 6677666542 578888765443 3455 3 88877744 233 2 2245889999
Q ss_pred HHhCCCCCEEEEEeee
Q 018576 274 YKSVPEDGKVIVVELM 289 (353)
Q Consensus 274 ~~~L~pgG~l~i~e~~ 289 (353)
.+.|+|||.+.|+-..
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999987654
No 376
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=85.93 E-value=0.7 Score=44.63 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCCC
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDG 111 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~~ 111 (353)
..+..|+..|.+.+ +..+.++||+.+|+ ++..+.+.+..|.+.|+++...+ ....|.+|+.|..++....+
T Consensus 6 ~~e~~iL~~l~~~~--~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESEN--EIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK---KSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCCH
Confidence 45666778887621 37899999999999 99999999999999999998742 36889999999988887765
Q ss_pred C
Q 018576 112 V 112 (353)
Q Consensus 112 ~ 112 (353)
.
T Consensus 77 E 77 (494)
T PTZ00326 77 E 77 (494)
T ss_pred H
Confidence 3
No 377
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=85.80 E-value=1 Score=31.57 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+..+++.++.+.. .+.+..+|+..+|. +++.+-..++.|...|++.+.
T Consensus 2 ~~~~~~Le~I~rsR~-~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 2 DIQYCLLERIARSRY-NGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred chHHHHHHHHHhcCC-CCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 345667888887654 47899999999999 999999999999999999987
No 378
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=85.67 E-value=0.64 Score=34.97 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=33.9
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-|++.|... |.+|-++||+.+++ ++.-++++|..|...|++...
T Consensus 17 ~Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 17 RILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 367788765 48999999999999 999999999999999999765
No 379
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=85.62 E-value=0.83 Score=39.31 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=49.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+..|+..|...- ..+.-.|||+.+|+ .+.++...++-|+..|++.+. ..++|..|..|..++
T Consensus 12 ~fqIL~ei~~~q--p~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~-----gR~~Y~iTkkG~e~l 73 (260)
T COG1497 12 RFQILSEIAVRQ--PRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE-----GRGEYEITKKGAEWL 73 (260)
T ss_pred HHHHHHHHHHhC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec-----CCeeEEEehhHHHHH
Confidence 344555555421 37899999999999 999999999999999999985 256899999887655
No 380
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=85.42 E-value=1.4 Score=34.83 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
||+|.+|||-..|+ ..+.+.--|.++.+-|-+.+...+| .=+|+++
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~g--kfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNG--KFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCC--ceEEeCC
Confidence 69999999999999 9999999999999999999985444 4567776
No 381
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.88 E-value=6.1 Score=36.75 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=64.7
Q ss_pred CeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCee---EEeCC-CCC---CC--CCC-cEEEeccccc
Q 018576 192 KQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIE---HVAGD-MFQ---SV--PKG-DAIFLKWILH 259 (353)
Q Consensus 192 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~---~~~~d-~~~---~~--p~~-D~i~~~~~Lh 259 (353)
.+|+=+||| .|.++..+++.+...++++.|. +.-++.|++..... ....+ ... .. ..+ |+++=.--
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 499999999 5777788999998899999998 77888887732222 22121 100 11 123 87765544
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
....+..+.++++|||++.++-....+
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788899999999999998876554
No 382
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=84.73 E-value=1.2 Score=34.10 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.++|++|||+.+.+ .++.++.+|+-|.+.|.++-.|.
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~pg 54 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQPG 54 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeeeCC
Confidence 47899999999999 99999999999999999998753
No 383
>PRK10742 putative methyltransferase; Provisional
Probab=84.45 E-value=2.1 Score=37.56 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=33.3
Q ss_pred HHHHhccccCCCC--eEEEEcCCchHHHHHHHHHCCCCeEEEecch
Q 018576 180 NILESYKGFANIK--QLVDVGGNLGVTLQAITSKYPYIKGINFDQP 223 (353)
Q Consensus 180 ~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 223 (353)
.+++... ++++. +|||.=+|+|.-+..++.. +++++.++..
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~ 119 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERN 119 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECC
Confidence 4566555 66555 9999999999999999988 6779999983
No 384
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.37 E-value=7.5 Score=38.09 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCC--------------CC--------
Q 018576 190 NIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMF--------------QS-------- 245 (353)
Q Consensus 190 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~--------------~~-------- 245 (353)
.+.+|+=+|||. |..+...++.... +++++|. ++..+.+++. ..++...|.. ++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 578999999995 5667777887754 8999998 6677777654 2222211110 01
Q ss_pred ----CCCCcEEEeccccccCCchHHHHH-HHHHHHhCCCCCEEEEEee
Q 018576 246 ----VPKGDAIFLKWILHDWDDEHCLKL-LKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 246 ----~p~~D~i~~~~~Lh~~~~~~~~~~-L~~~~~~L~pgG~l~i~e~ 288 (353)
....|+++-.-.... .....+ .++..+.|||||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 012388877654322 112244 5999999999999887654
No 385
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=84.28 E-value=0.88 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+++ +..-+++-|+.|++.|+++..
T Consensus 22 ~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 22 DRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp SBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 467 99999999999 999999999999999999987
No 386
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.20 E-value=1.6 Score=38.75 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=47.8
Q ss_pred HHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCE
Q 018576 204 TLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGK 282 (353)
Q Consensus 204 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~ 282 (353)
++..|.+..+..++++.|. +..++.+.+..-+.-...+ .+.+.+.|+|++.- |.....++|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 4677888888999999998 6677777554433333332 11233448888774 335577888888888888765
Q ss_pred EEE
Q 018576 283 VIV 285 (353)
Q Consensus 283 l~i 285 (353)
+.=
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 387
>PF13730 HTH_36: Helix-turn-helix domain
Probab=84.10 E-value=0.85 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=27.5
Q ss_pred CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 51 t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
|.+.||+.+|+ ...-+.+.++.|+..|++
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 999999999999999985
No 388
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.07 E-value=6 Score=35.53 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=55.6
Q ss_pred CeEEEEcCC--chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCC-CCCCCCCcEEEeccccccCCchHHH
Q 018576 192 KQLVDVGGN--LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDM-FQSVPKGDAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 192 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~-~~~~p~~D~i~~~~~Lh~~~~~~~~ 267 (353)
.+|+=+|.| .|.++..+.++.+...+++.|. ...++.+....-+.-...+. ......+|+|+.+=-+ ....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-----~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-----EATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-----HHHH
Confidence 467777777 5677777777777778899998 44555554332222222222 1234445988887443 4567
Q ss_pred HHHHHHHHhCCCCCEEE
Q 018576 268 KLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~ 284 (353)
.+++++...|+||..+.
T Consensus 79 ~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 79 EVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHhcccCCCCCEEE
Confidence 88999998888876543
No 389
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=83.98 E-value=1.4 Score=32.14 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+.|+..|... ||-.+.-+|..+++ +..-++..++.|+..|++++.
T Consensus 8 l~~~IL~hl~~~---~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKA---GPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHH---CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 356677888886 47899999999999 999999999999999999997
No 390
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=83.89 E-value=2.1 Score=35.31 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=32.4
Q ss_pred cEEEeccccccCCc----------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDD----------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|+++++||+++. +...+++++++.+|+|+..++....++
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999875 346688888888888887776665544
No 391
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.71 E-value=16 Score=30.75 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHH---C-CCCeEEEecchH--HHhhCCCCCCeeEEeCCCCCC-CC-------CC--cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK---Y-PYIKGINFDQPH--VIEHAPLHPHIEHVAGDMFQS-VP-------KG--DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~---~-p~~~~~~~D~~~--~~~~a~~~~rv~~~~~d~~~~-~p-------~~--D~i~ 253 (353)
++..|+++|.-.|+.++.++.- . ...+++++|+.. .-..|++.++|.|++++-.+| +. +. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4789999999888877765542 2 346888888732 224455578999999987763 21 12 5666
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVP 294 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~ 294 (353)
+-..-|.. +.+.+.|+-....|.-|.++++-|....+-+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 76776653 5567778888888999999999888776543
No 392
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=83.63 E-value=1.4 Score=42.37 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=43.2
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
|...|.. ||.|+.||++.+|+ ....+.+.|..| .|+|... +.|. ..+|+++...+
T Consensus 5 ~~~~L~~----g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~-~~gr-~~~Y~l~~~~~ 59 (442)
T PRK09775 5 LTTLLLQ----GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRF-GKAR-ATRYALLRPLR 59 (442)
T ss_pred HHHHHhc----CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEe-ccCc-eEEEEeccccc
Confidence 4456666 59999999999999 999999999999 8888876 3443 56687775543
No 393
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=83.26 E-value=3.4 Score=39.37 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCC------C-CCeeEEeCCCCC---CCC--CC-cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPL------H-PHIEHVAGDMFQ---SVP--KG-DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~---~~p--~~-D~i~ 253 (353)
.+..+.|+|.|.|.-...+....+. -.++.+|. ..+...... + .++-....-+.. |.+ .+ |+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4568888998877655555555544 35788887 334433321 1 112222212322 333 23 9999
Q ss_pred eccccccCCchHHH-HHHH-HHHHhCCCCCEEEEEeeec
Q 018576 254 LKWILHDWDDEHCL-KLLK-NCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~-~~L~-~~~~~L~pgG~l~i~e~~~ 290 (353)
++++||.+.....+ .+.+ -.+...++|++++++|...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999998755532 3333 3456678999999999654
No 394
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=83.24 E-value=1.4 Score=41.96 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=36.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.|.|.++|++.+++ ++..++++|+.|...|++.+. +++.|.+.
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~-----~~g~~~l~ 351 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRG-----ERGQWVLA 351 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEec-----CCCceEec
Confidence 58999999999999 999999999999999999864 23456554
No 395
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=82.46 E-value=1.4 Score=37.32 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHhChhhhhhh----cCCCCCCCHHHHHHhCCCCCCCC-cCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDK----AGPGAKLSASDIAAQLPTKNKDA-PTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~----~~~~~~~t~~ela~~~~~~~~~~-~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|++.|.+ .+ -|.|+.|||+.+|+ . +.-+.+.|+.|...|++++.
T Consensus 7 ~q~~iL~~l~~~~~~~~--~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~ 59 (199)
T TIGR00498 7 RQQEVLDLIRAHIESTG--YPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD 59 (199)
T ss_pred HHHHHHHHHHHHHHhcC--CCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC
Confidence 34445555553 11 36789999999999 7 88999999999999999986
No 396
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=82.25 E-value=1.5 Score=38.74 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=40.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|.+.|.+. +..|+.|||+.+++ .+.-++|-|+.|++.|++.+.
T Consensus 7 ~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQL---GFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34477888876 58999999999999 999999999999999999976
No 397
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=82.05 E-value=1 Score=31.54 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=23.9
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
++..|.++ .|+|+++||.++|. ...-++..|..+.
T Consensus 29 LLr~LA~G---~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG---QPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT---S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 78889885 69999999999999 6666666665554
No 398
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=82.02 E-value=2.3 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCCHHHHHHhC--CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 49 KLSASDIAAQL--PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 49 ~~t~~ela~~~--~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
..+.++||+.+ ++ ...-++.-|+.|...|++++. +++.|..|..+-.
T Consensus 39 ~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~-----~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 39 APDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD-----GDGKYVQTDKSLT 87 (171)
T ss_pred CCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC-----CCCcEEEecceee
Confidence 33899999999 99 899999999999999999986 2568998865443
No 399
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.93 E-value=7.4 Score=35.40 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=49.7
Q ss_pred CCeEEEEcCCc-h-HHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHH
Q 018576 191 IKQLVDVGGNL-G-VTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 191 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~ 267 (353)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......+..+...+.|+|++.-. .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788899885 3 33344444322247889998 45555544322111111121112233488877643 33446
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018576 268 KLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~i 285 (353)
.+++.+...++||..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 778888888888875544
No 400
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.93 E-value=4.1 Score=35.80 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCC--CC-cEEEeccccccCCchH
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVP--KG-DAIFLKWILHDWDDEH 265 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p--~~-D~i~~~~~Lh~~~~~~ 265 (353)
.++..-+|+|...|+++-.|.++ ++.++.+|...|.+..-.+++|+....|-|+-.| .. |-.+|-.|= +
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE------k 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE------K 281 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc------C
Confidence 46789999999999999999998 7899999987777777777889999999888444 33 666665442 2
Q ss_pred HHHHHHHHHHhCCCC
Q 018576 266 CLKLLKNCYKSVPED 280 (353)
Q Consensus 266 ~~~~L~~~~~~L~pg 280 (353)
..++-..+...|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 234444445555544
No 401
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=81.71 E-value=2.5 Score=38.06 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=65.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC----C--CCeeEEeCCCCCC----CCC-CcEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL----H--PHIEHVAGDMFQS----VPK-GDAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~--~rv~~~~~d~~~~----~p~-~D~i~~ 254 (353)
..++.+|||..++.|+=+..+++..+ ...++..|. +.-+...++ . ..+.....|.... .+. .|.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999986 578999997 433333222 1 4455555554331 111 144443
Q ss_pred c------cccccCC-------chH-------HHHHHHHHHHhC----CCCCEEEEEeeec
Q 018576 255 K------WILHDWD-------DEH-------CLKLLKNCYKSV----PEDGKVIVVELML 290 (353)
Q Consensus 255 ~------~~Lh~~~-------~~~-------~~~~L~~~~~~L----~pgG~l~i~e~~~ 290 (353)
- .++..-+ ..+ -.++|+++.+.+ +|||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 1 1111111 111 237899999999 9999999887654
No 402
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=81.33 E-value=2.6 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=38.3
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|...++. +..|.++|-+.+|+ +..-+...|.-|+..|++.+.
T Consensus 8 ~~IL~~ls~----~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 8 QKILIILSK----RCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHHHh----ccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 345666776 48999999999999 889999999999999999985
No 403
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=81.26 E-value=3.7 Score=36.10 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCchHHHHH---HHHHC--CCCeEEEecc----hHHHh---------------------------hCCCC-
Q 018576 190 NIKQLVDVGGNLGVTLQA---ITSKY--PYIKGINFDQ----PHVIE---------------------------HAPLH- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~---l~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~~- 232 (353)
=+..|+++||=.|..++. +++.+ ++-++.++|. |+.-. +..+.
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357999999998876654 34444 4567888884 22111 11111
Q ss_pred ---CCeeEEeCCCCCCCCCC---cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 233 ---PHIEHVAGDMFQSVPKG---DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 233 ---~rv~~~~~d~~~~~p~~---D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++++++.|.|.+-+|.. .+.++. +=-++= +-...+|..++..|.|||.+++=|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~-lD~DlY-esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLH-LDCDLY-ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEE-E---SH-HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEE-Eeccch-HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 47999999987644432 222222 111121 2256899999999999999998543
No 404
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=80.39 E-value=1.4 Score=32.82 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=38.2
Q ss_pred HHhChhhhhhh-cCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDK-AGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+-.|++.|.. .....++++++|++.+++ +..-++..|+.|...|++--.
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEecc
Confidence 45566666665 111257999999999999 999999999999999998643
No 405
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=80.19 E-value=1.9 Score=26.38 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHH
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L 77 (353)
++..|+..|... +..|..+||+.+|+ .+..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d---~r~s~~~la~~lgl----S~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQED---GRRSYAELAEELGL----SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH----TTS-HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCccHHHHHHHHCc----CHHHHHHHHHHh
Confidence 456788888886 58999999999999 777666544443
No 406
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.08 E-value=4.6 Score=35.79 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=31.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-----PYIKGINFDQ 222 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~ 222 (353)
+.+...++|+|||.|.++..+.+.. +..+++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4667899999999999999999988 5678999997
No 407
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=79.46 E-value=1.8 Score=38.21 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=41.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-+..|.+.|.+. +..|+.|||+.+++ .+.-++|-|..|+..|++.+.
T Consensus 6 R~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~ 52 (252)
T PRK10906 6 RHDAIIELVKQQ---GYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH 52 (252)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 345577888876 58999999999999 999999999999999999986
No 408
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=79.32 E-value=2.8 Score=36.97 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC--------CCeEEEecch
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP--------YIKGINFDQP 223 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~ 223 (353)
.+.+|+|+|+|+|.++..+++... .++++.++.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 358999999999999999887543 3588999973
No 409
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=79.30 E-value=2.7 Score=38.59 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=42.6
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
..|++.|..+ .+.+.++||+.+++ ....+.+.++.|...|++-+. . .+..|.+...
T Consensus 7 ~~il~~L~~~---~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i~~-~---~~~Gy~L~~~ 62 (319)
T PRK11886 7 LQLLSLLADG---DFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDIFS-V---KGKGYRLAEP 62 (319)
T ss_pred HHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceEE-e---cCCeEEecCc
Confidence 4567777764 47899999999999 999999999999999994433 1 1345776543
No 410
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=79.11 E-value=8.6 Score=28.52 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=45.2
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCC----CCCCcCcHHHHHHHHhcccceeeec---cCCCCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTK----NKDAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~----~~~~~~~l~r~L~~L~~~g~l~~~~---~~g~~~~~y~~t~~~~~l~ 106 (353)
|+..|.. +|.+--||.+.+.-. -+.++.-+-..|+-|+..|+++... .++.....|.+|+.|+.++
T Consensus 9 iL~~L~~----~~~~GYei~~~l~~~~~~~~~i~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l 81 (100)
T TIGR03433 9 ILKTLSL----GPLHGYGIAQRIQQISEDVLQVEEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQL 81 (100)
T ss_pred HHHHHhc----CCCCHHHHHHHHHHHcCCccccCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHH
Confidence 4555655 378888888775210 1127888999999999999999841 1222345699998888665
No 411
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=79.08 E-value=4.3 Score=36.02 Aligned_cols=206 Identities=14% Similarity=0.103 Sum_probs=106.5
Q ss_pred CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCCCCChHHHHH-HhcC-hhHHH
Q 018576 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQ-MIQD-KVFLE 128 (353)
Q Consensus 51 t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~-~~~~-~~~~~ 128 (353)
++-.|++...+ +-+.+..+++.|...|++..+ .+...+|..|..+....+-.+..+.-. .+.. .....
T Consensus 36 d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~~------~g~v~~TekG~E~~e~~gi~~~~~~~C~~CeGrgi~l~ 105 (354)
T COG1568 36 DFWKIVDYSDL----PLPLVASILEILEDEGIVKIE------EGGVELTEKGEELAEELGIKKKYDYTCECCEGRGISLQ 105 (354)
T ss_pred chHhhhhhccC----CchHHHHHHHHHHhcCcEEEe------cCcEeehhhhHHHHHHhCCCccccccccCcCCccccch
Confidence 88889999999 888999999999999999987 344889988887665433221111110 0000 01111
Q ss_pred hhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhcc-ccCCCCeEEEEcCCchHHHHH
Q 018576 129 SWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYK-GFANIKQLVDVGGNLGVTLQA 207 (353)
Q Consensus 129 ~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~ 207 (353)
.+..|.+-++. +.-..|.-...|.|+...-...+. .+.=.+. +--.+..|+-+| -.-.++++
T Consensus 106 ~f~dll~kf~e---------------iaK~RP~p~~~yDQgfvTpEttv~-Rv~lm~~RGDL~gK~I~vvG-DDDLtsia 168 (354)
T COG1568 106 AFKDLLEKFRE---------------IAKDRPEPLHQYDQGFVTPETTVS-RVALMYSRGDLEGKEIFVVG-DDDLTSIA 168 (354)
T ss_pred hHHHHHHHHHH---------------HHhcCCCcchhcccccccccceee-eeeeeccccCcCCCeEEEEc-CchhhHHH
Confidence 12222222111 011112222223332211100000 0000000 011356799999 33344444
Q ss_pred HHH-HCCCCeEEEecchH-HHh----hCCC--CCCeeEEeCCCCCCCCCC-----cEEEeccccccCCchHHHHHHHHHH
Q 018576 208 ITS-KYPYIKGINFDQPH-VIE----HAPL--HPHIEHVAGDMFQSVPKG-----DAIFLKWILHDWDDEHCLKLLKNCY 274 (353)
Q Consensus 208 l~~-~~p~~~~~~~D~~~-~~~----~a~~--~~rv~~~~~d~~~~~p~~-----D~i~~~~~Lh~~~~~~~~~~L~~~~ 274 (353)
++- ..| -++.++|+.+ .+. .+++ ..++..+..|..+|+|+. |+++.--.= +-.....+|.+=.
T Consensus 169 ~aLt~mp-k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~FlgRGI 244 (354)
T COG1568 169 LALTGMP-KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFLGRGI 244 (354)
T ss_pred HHhcCCC-ceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHHhccH
Confidence 433 334 3777788743 232 2222 267889999999999862 876543221 1123456777777
Q ss_pred HhCCCC---CEEEEEe
Q 018576 275 KSVPED---GKVIVVE 287 (353)
Q Consensus 275 ~~L~pg---G~l~i~e 287 (353)
++|+.- |++-|.-
T Consensus 245 ~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 245 ATLKGEGCAGYFGITR 260 (354)
T ss_pred HHhcCCCccceEeeee
Confidence 788754 6776654
No 412
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.07 E-value=27 Score=30.03 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC--CCeEEEecc--hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCch
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP--YIKGINFDQ--PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDE 264 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~ 264 (353)
+++..||-.||..|+.+-++++.+. +..+...-. +.|.+.+.+ .++.....|. -+++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV------------------~~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDV------------------SKPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEecc------------------CChH
Confidence 4567899999999999999999874 344444433 333332221 2344444443 2357
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 265 HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 265 ~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+++.+..+++.- |.|.|-+.-
T Consensus 66 ~V~~v~~evr~~--~~Gkld~L~ 86 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDLLY 86 (289)
T ss_pred HHHHHHHHHhhC--CCCceEEEE
Confidence 788899988876 777765443
No 413
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=79.03 E-value=1.8 Score=29.10 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=34.9
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|++.|-.. |+.|+.+|++.+++ ++..++.-|-.|...+++.+.
T Consensus 18 V~~~Ll~~---G~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 18 VGEVLLSR---GRLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHC----SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeeee
Confidence 45566655 58999999999999 999999999999999999875
No 414
>PF13814 Replic_Relax: Replication-relaxation
Probab=79.02 E-value=2.7 Score=35.15 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=46.3
Q ss_pred hhhhcCCCCCCCHHHHHHhCCCCCCCCcC---cHHHHHHHHhcccceeeeccC-----CCCccceecccccccccC
Q 018576 40 IIDKAGPGAKLSASDIAAQLPTKNKDAPT---MLDRILRLLASYSVVECSLDG-----SGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 40 ~L~~~~~~~~~t~~ela~~~~~~~~~~~~---~l~r~L~~L~~~g~l~~~~~~-----g~~~~~y~~t~~~~~l~~ 107 (353)
.|.+. ..+|.+||++.+.. +.. .+++.|+-|...|+|...... |.....|.+|+.|..++.
T Consensus 3 ~L~~~---r~lt~~Qi~~l~~~----~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 3 LLARH---RFLTTDQIARLLFP----SSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred hHHHh---cCcCHHHHHHHHcC----CCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 45554 48999999999998 444 799999999999999987321 224567888888876554
No 415
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=78.75 E-value=1.9 Score=38.19 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=41.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|.+.|.+. +.+++.|||+.+++ .+.-++|=|+.|+..|++.+.
T Consensus 7 ~~~Il~~L~~~---~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r~ 52 (256)
T PRK10434 7 QAAILEYLQKQ---GKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIRT 52 (256)
T ss_pred HHHHHHHHHHc---CCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45678888886 58999999999999 999999999999999999886
No 416
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=78.45 E-value=3.5 Score=35.76 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 47 GAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 47 ~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
|.+++-.+||+.+|+ +...++.-|..|++.|+|+..+
T Consensus 37 G~~l~e~~La~~~gv----SrtPVReAL~rL~~eGlv~~~p 73 (230)
T COG1802 37 GERLSEEELAEELGV----SRTPVREALRRLEAEGLVEIEP 73 (230)
T ss_pred CCCccHHHHHHHhCC----CCccHHHHHHHHHHCCCeEecC
Confidence 369999999999999 9999999999999999999974
No 417
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=78.29 E-value=8.4 Score=28.41 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=47.3
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc------cCHHHHHHHH
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE------RTKHEFMTLA 329 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~t~~~~~~ll 329 (353)
.+|-|++.++..++|+++...- .+.+++.-. |.. + ....+ ....-.+|++.. ..++++.+.+
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t--~~~~ifTfA--P~T---~----~L~~m-~~iG~lFP~~dRsp~i~~~~e~~l~~~l 70 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRT--RGSLIFTFA--PRT---P----LLALM-HAIGKLFPRPDRSPRIYPHREEDLRRAL 70 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhc--cCcEEEEEC--CCC---H----HHHHH-HHHhccCCCCCCCCcEEEeCHHHHHHHH
Confidence 4555678888899999987753 366666432 111 0 00111 111222444432 2588999999
Q ss_pred HhcCCceeeEeeeCCc
Q 018576 330 TGAGFSGIRSDLVTGN 345 (353)
Q Consensus 330 ~~aGf~~v~~~~~~~~ 345 (353)
+++||++.+...+..+
T Consensus 71 ~~~g~~~~r~~ris~g 86 (97)
T PF07109_consen 71 AAAGWRIGRTERISSG 86 (97)
T ss_pred HhCCCeeeecccccCc
Confidence 9999999888776543
No 418
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=78.24 E-value=1.5 Score=27.75 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSV 82 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~ 82 (353)
.+..++..+.. +.|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~-----G~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE-----GWSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH-----T--HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHC-----CCCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 34555666666 5899999999999 99999999997766664
No 419
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.09 E-value=14 Score=33.74 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=64.9
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC--CeeEEeCCC-----CCC----CCC--CcEE
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP--HIEHVAGDM-----FQS----VPK--GDAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--rv~~~~~d~-----~~~----~p~--~D~i 252 (353)
...+.+||-+|+| .|..+...++.+...++++.|+ +.-++.|++.. -+......- .+. ... .|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5677899999999 5777888888999999999999 77788888741 111111111 000 111 1555
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+-...++ ..++....++++||.+++.....+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 5554443 4566677899999998888865443
No 420
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=77.93 E-value=1.8 Score=28.27 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCC
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSG 91 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~ 91 (353)
|-+++++||++.|+ -..-+-.-||-|.+.|+++.. ..|+
T Consensus 3 g~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIesr-SlGm 41 (61)
T PF08222_consen 3 GRLVASKIADRVGI----TRSVIVNALRKLESAGVIESR-SLGM 41 (61)
T ss_dssp EEE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEEE-ETTS
T ss_pred ceehHHHHHHHhCc----cHHHHHHHHHHHHhcCceeec-ccCC
Confidence 36789999999999 777888899999999999965 3454
No 421
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=77.58 E-value=2.2 Score=36.74 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHH
Q 018576 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77 (353)
Q Consensus 24 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L 77 (353)
..-.+|..|.++|-||.=.. .|+.+||+.+|+ .+..+...||-.
T Consensus 159 rQ~~vL~~A~~~GYFd~PR~------~~l~dLA~~lGI----Skst~~ehLRrA 202 (215)
T COG3413 159 RQLEVLRLAYKMGYFDYPRR------VSLKDLAKELGI----SKSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHHcCCCCCCcc------CCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 44579999999999998765 799999999999 666666666643
No 422
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=77.12 E-value=12 Score=33.45 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=48.5
Q ss_pred eEEEEcCCc--hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHH
Q 018576 193 QLVDVGGNL--GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKL 269 (353)
Q Consensus 193 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~ 269 (353)
+|.=||+|. |.++..|.+. +.+++++|. ++.++.+.....+.....+. +...+.|+|++. .+.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHH
Confidence 466678773 4455555554 468899998 55555554332222111111 112234888877 344556788
Q ss_pred HHHHHHhCCCCCEE
Q 018576 270 LKNCYKSVPEDGKV 283 (353)
Q Consensus 270 L~~~~~~L~pgG~l 283 (353)
++++...++|+..+
T Consensus 74 ~~~l~~~l~~~~ii 87 (279)
T PRK07417 74 SEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHhCCCCcEE
Confidence 99999988877433
No 423
>PHA02591 hypothetical protein; Provisional
Probab=76.92 E-value=2.3 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=26.4
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHH
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRL 76 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~ 76 (353)
+...|.+. +.|.++||+.+|+ +.+.++++|+.
T Consensus 51 vA~eL~eq----GlSqeqIA~~LGV----sqetVrKYL~~ 82 (83)
T PHA02591 51 VTHELARK----GFTVEKIASLLGV----SVRKVRRYLES 82 (83)
T ss_pred HHHHHHHc----CCCHHHHHHHhCC----CHHHHHHHHhc
Confidence 44566664 7999999999999 99999998874
No 424
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=76.85 E-value=8.2 Score=31.08 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=57.6
Q ss_pred HhhhHHHHHHHHHHHhCh-------hhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCC
Q 018576 20 AMGTVLPMAMQAVYELGI-------FQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGA 92 (353)
Q Consensus 20 ~~~~~~~~~l~~a~~lgl-------f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~ 92 (353)
+++-|...++.++...++ +..+.-.+ -|+++.+|+..++.. +...+.--|+-|...|+++.. ++|+
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrd--R~K~laDic~~ln~e---Dth~itYslrKL~k~gLit~t-~~gk- 136 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRD--RPKSLADICQMLNRE---DTHNITYSLRKLLKGGLITRT-GSGK- 136 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC--chhhHHHHHHHhccc---cchhHHHHHHHHHhccceecC-CCCc-
Confidence 455666777777755443 33333322 489999999999884 777888899999999999987 5554
Q ss_pred ccceeccccccccc
Q 018576 93 RRRYSLNSVSKYYV 106 (353)
Q Consensus 93 ~~~y~~t~~~~~l~ 106 (353)
.-+|..|+.|...+
T Consensus 137 evTy~vTa~G~~ac 150 (199)
T COG5631 137 EVTYEVTALGHRAC 150 (199)
T ss_pred eEEEEEecchHHHH
Confidence 57888887765443
No 425
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=76.64 E-value=2.5 Score=32.53 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=47.8
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCC-CCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKN-KDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~-~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+.-+.-|++.|.+.+ ++.|++||-+.+.-+. +.+..-+-|-|+.|+..|++.+...++ ....|....
T Consensus 7 T~~R~~Il~~l~~~~--~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~-~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESP--EHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGD-GESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHS--SSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETT-SEEEEEESS
T ss_pred CHHHHHHHHHHHcCC--CCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCC-CcceEeecC
Confidence 455677888888864 5999999999985311 114556899999999999999985332 245676654
No 426
>PF13518 HTH_28: Helix-turn-helix domain
Probab=76.54 E-value=3.1 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=27.2
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
.|+.++|+.+|+ +..-+.+|++.....|+-
T Consensus 13 ~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~~ 42 (52)
T PF13518_consen 13 ESVREIAREFGI----SRSTVYRWIKRYREGGIE 42 (52)
T ss_pred CCHHHHHHHHCC----CHhHHHHHHHHHHhcCHH
Confidence 499999999999 999999999999888863
No 427
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=76.52 E-value=2.8 Score=34.37 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=38.4
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
.|..+||+.+++ ...-+.|.+..|...+++.+. ..+.|.++|.-.
T Consensus 76 ~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~-----~~G~Y~iNP~~~ 120 (165)
T PF05732_consen 76 ATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKI-----RNGAYMINPNFF 120 (165)
T ss_pred eeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEc-----cCCeEEECcHHh
Confidence 588999999999 888999999999999999986 246788876533
No 428
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=76.51 E-value=3.7 Score=41.82 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHC-------C-----CCeEEEecc-h---HHHhhCC----------------------C
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKY-------P-----YIKGINFDQ-P---HVIEHAP----------------------L 231 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 231 (353)
...+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999998777666544 4 467888884 2 1111110 0
Q ss_pred C-------CC--eeEEeCCCCCC---CCC-CcEEEeccccc-cCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 232 H-------PH--IEHVAGDMFQS---VPK-GDAIFLKWILH-DWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 232 ~-------~r--v~~~~~d~~~~---~p~-~D~i~~~~~Lh-~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
. .+ +++..+|+.+. +.. .|++++--.=- .-++---..+|+.+++.++|||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0 12 34566777652 222 38887652211 111112358899999999999998843
No 429
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=76.33 E-value=3.8 Score=35.31 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=33.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..++..+||+.+|+ ....++.-|+.|++.|+|+..+
T Consensus 29 ~~L~e~eLae~lgV----SRtpVREAL~~L~~eGlv~~~~ 64 (224)
T PRK11534 29 EKLRMSLLTSRYAL----GVGPLREALSQLVAERLVTVVN 64 (224)
T ss_pred CcCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEEeC
Confidence 68899999999999 8899999999999999999873
No 430
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=76.28 E-value=0.97 Score=31.35 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhC---CCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQL---PTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~---~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..++.++|+.+ +.++ ..+++-.++++|++.|++++.
T Consensus 23 ~~i~l~~ia~~l~~~~~k~--~~RRlYDI~NVLealgli~K~ 62 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT--QRRRLYDIINVLEALGLIEKQ 62 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH--HCHHHHHHHHHHHHCTSEEEE
T ss_pred CcccHHHHHHHHccccccc--ccchhhHHHHHHHHhCceeec
Confidence 589999999999 6622 578899999999999999986
No 431
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=76.03 E-value=2.8 Score=37.44 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=41.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-...|++.|... +..|+.|||+.+++ ...-++|=|..|.+.|++.+.
T Consensus 18 R~~~Il~~L~~~---~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r~ 64 (269)
T PRK09802 18 RREQIIQRLRQQ---GSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVRA 64 (269)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEEE
Confidence 455678888886 48999999999999 899999999999999999986
No 432
>PRK12423 LexA repressor; Provisional
Probab=75.94 E-value=3 Score=35.50 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+-|..|||+.+|+. .+..+++.|+.|+..|+++..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 45999999999952 667889999999999999986
No 433
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.90 E-value=3.8 Score=31.01 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=45.7
Q ss_pred CCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC--CC-----CCcEEEeccccccCCchHHHH
Q 018576 199 GNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS--VP-----KGDAIFLKWILHDWDDEHCLK 268 (353)
Q Consensus 199 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--~p-----~~D~i~~~~~Lh~~~~~~~~~ 268 (353)
||.|.++..+++.+ .+.+++++|. ++.++.++... +.++.||..++ +. +++.+++..- +++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC-----CHHHHH
Confidence 34455666655544 3458999998 66666665443 88999999872 21 2265554422 233333
Q ss_pred HHHHHHHhCCCCCEEEE
Q 018576 269 LLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 269 ~L~~~~~~L~pgG~l~i 285 (353)
.+-...+.+.|..+++.
T Consensus 78 ~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHCCCCeEEE
Confidence 34444455667766664
No 434
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=75.33 E-value=3.2 Score=34.46 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=33.8
Q ss_pred CHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcccee
Q 018576 51 SASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYS 97 (353)
Q Consensus 51 t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~ 97 (353)
|-.+|++.+ |+ .+.-++|.|..|+..|++.+. ++..+.+|.
T Consensus 72 SN~~La~r~~G~----s~~tlrR~l~~LveaGLI~rr--DS~NgkRy~ 113 (177)
T PF03428_consen 72 SNAQLAERLNGM----SERTLRRHLARLVEAGLIVRR--DSPNGKRYA 113 (177)
T ss_pred CHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeeec--cCCCCCccC
Confidence 668999999 99 999999999999999999985 333344554
No 435
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=75.30 E-value=3.7 Score=28.90 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|+...+||+.++. ++.-++--+..|.++|+|+..
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~ 56 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQ 56 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCC
Confidence 59999999999999 999999999999999999853
No 436
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=74.95 E-value=4.9 Score=39.62 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=46.3
Q ss_pred HhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecchHHHhhCCCCCCeeEEeCCCCC
Q 018576 171 YNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQPHVIEHAPLHPHIEHVAGDMFQ 244 (353)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~ 244 (353)
++.+.+.+-++-..|.=+.....|||+||..|+++.-.++..|- .-++|+|+..+- ..++|...+.|+.+
T Consensus 25 rsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----p~~~c~t~v~dItt 95 (780)
T KOG1098|consen 25 RSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----PIPNCDTLVEDITT 95 (780)
T ss_pred hHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----cCCccchhhhhhhH
Confidence 34444445566677762356789999999999999999999974 357999983221 12344445555543
No 437
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=74.85 E-value=6.9 Score=28.33 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=45.2
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.++....+..++..|.+. .+.++.+|+..+++ ....+.+.|..|...|++...
T Consensus 20 ~~l~~~~r~~il~~l~~~---~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~ 72 (110)
T COG0640 20 KALADPTRLEILSLLAEG---GELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR 72 (110)
T ss_pred HHhCCHHHHHHHHHHHhc---CCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence 345555778888888873 27899999999999 999999999999999999986
No 438
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=74.72 E-value=7.9 Score=30.07 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCC---CC-cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVP---KG-DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p---~~-D~i~~~~~Lh~~~~~~ 265 (353)
+..+|++||-|.=.-....++.. +..+++.|..+. .+. .++.++.-|+++|-. ++ |+|.+...= .+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~--~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRPP-----~E 82 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR--KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRPP-----PE 82 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------TT
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc--ccc--cCcceeeecccCCCHHHhcCCcEEEEeCCC-----hH
Confidence 35699999999776555555544 389999998433 222 689999999998533 34 998887652 34
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
....+.++.+.. |.-++|.....
T Consensus 83 l~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 83 LQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp SHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred HhHHHHHHHHHh--CCCEEEECCCC
Confidence 444555555543 46677665543
No 439
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=74.71 E-value=9.3 Score=31.09 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 267 LKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 267 ~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.+.+.+++++|||||.|++.-++-++
T Consensus 91 l~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEeecCCc
Confidence 47788999999999999999887654
No 440
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=74.38 E-value=9 Score=26.50 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=38.4
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHH--hcccceeeecc-CCCCccceec
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL--ASYSVVECSLD-GSGARRRYSL 98 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L--~~~g~l~~~~~-~g~~~~~y~~ 98 (353)
.|++.|... ++.|+++|++++|. .+.-++..|--+ -..|+--...+ +| ....|++
T Consensus 14 ~li~mL~rp---~GATi~ei~~atGW----q~HTvRgalsg~~kKklGl~i~s~k~~g-~~r~YrI 71 (72)
T PF11994_consen 14 QLIAMLRRP---EGATIAEICEATGW----QPHTVRGALSGLLKKKLGLTITSEKVDG-GGRRYRI 71 (72)
T ss_pred HHHHHHcCC---CCCCHHHHHHhhCC----chhhHHHHHHHHHHHhcCcEEEeeecCC-CeeeEee
Confidence 356667664 47899999999999 899888887777 56676554432 22 2456664
No 441
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=74.15 E-value=3.6 Score=34.91 Aligned_cols=34 Identities=18% Similarity=0.430 Sum_probs=32.3
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.|-.+||+.+|+ .+.-+.|.|+.|...|++...
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~~ 201 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISAH 201 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 7899999999999 999999999999999999975
No 442
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=74.10 E-value=4.4 Score=34.56 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=33.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..++-.+||+.+|+ +..-++.-|+.|++.|+|+..+
T Consensus 33 ~~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 33 AKLNESDIAARLGV----SRGPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred CEecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEec
Confidence 68899999999999 8999999999999999999873
No 443
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=73.75 E-value=4.3 Score=38.89 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=53.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEE------Eecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGI------NFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDD 263 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~ 263 (353)
+.+|+=||||+=+.+..+--+--+++++ ++|. +...+.|.+ +.+ ...+..+..+.+|+|++. .||
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviL-----lPD 107 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINL-----TPD 107 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEc-----CCh
Confidence 6899999999766655443333334444 2222 122222222 222 223322235566998876 344
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
..-..+-+++...||||..|.+..-+
T Consensus 108 t~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 108 KQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred HHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 44557779999999999999987643
No 444
>PRK09954 putative kinase; Provisional
Probab=73.71 E-value=3.8 Score=38.25 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=39.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhccccee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVE 84 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~ 84 (353)
+..|+..|.+. ++.|..|||+.+++ ....+.+.|+.|...|++.
T Consensus 5 ~~~il~~l~~~---~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 5 EKEILAILRRN---PLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 44578888886 48999999999999 9999999999999999985
No 445
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=73.35 E-value=21 Score=31.89 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=69.4
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCe-EEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CC---CCC-cEEEeccccccCCch
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIK-GINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SV---PKG-DAIFLKWILHDWDDE 264 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~---p~~-D~i~~~~~Lh~~~~~ 264 (353)
+++|+-||.|.+...+.+.. .+ +..+|. +..++..+.+ +.. ...+|+.+ .. ... |+++...-...++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 68999999999988887763 44 566887 5455444332 222 55667765 21 223 999988777655421
Q ss_pred --------HHHHHHHHHHHhCCC-CCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 265 --------HCLKLLKNCYKSVPE-DGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 265 --------~~~~~L~~~~~~L~p-gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
....++.++.+.++- .-.++++|.+..-. . ..+.....+|.+.|++.||.
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~--------------------~-~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLL--------------------T-HDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchh--------------------c-cCchHHHHHHHHHHHhCCcE
Confidence 112233333333321 12466666553210 0 01123466788889999987
Q ss_pred eee
Q 018576 336 GIR 338 (353)
Q Consensus 336 ~v~ 338 (353)
+..
T Consensus 138 ~~~ 140 (275)
T cd00315 138 VYW 140 (275)
T ss_pred EEE
Confidence 643
No 446
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=73.00 E-value=1.8 Score=29.56 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=42.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.+-.|++.|...| +.|+-.+|..+|++. ...-+.+.|..|...|.|.++ +| .+-.|.++.
T Consensus 5 ~ee~Il~~L~~~g---~~~a~~ia~~~~L~~--~kk~VN~~LY~L~k~g~v~k~--~~-~PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKELG---GSTATAIAKALGLSV--PKKEVNRVLYRLEKQGKVCKE--GG-TPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHT---SSEEEHHHHHHHHTS---HHHHHHHHHHHHHTTSEEEE--CS-SSTEEEE-H
T ss_pred HHHHHHHHHHhcC---CccHHHHHHHhCcch--hHHHHHHHHHHHHHCCCEeeC--CC-CCCceEecc
Confidence 4667888888874 566666666666510 478899999999999999986 33 366677653
No 447
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=72.91 E-value=4.5 Score=29.65 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=33.0
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
.+.+.||+..|-. +++|-.|||+.+|+ ....+.|+=+.|-
T Consensus 41 l~~R~~i~~~Ll~----~~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 41 LGDRIRIVNELLN----GNMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 4578999998887 48999999999999 7777777766554
No 448
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=72.79 E-value=4 Score=34.01 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=32.4
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|+|-+|||+.+|+ .+.-+.|.|+.|...|++...
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~~ 176 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISIH 176 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 7899999999999 999999999999999999975
No 449
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=72.72 E-value=4.6 Score=30.82 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=32.1
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.|++|||+.+++ ...-++-++--|+..|++...
T Consensus 55 ~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v~ 88 (114)
T PF05331_consen 55 PLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRVR 88 (114)
T ss_pred CccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEEe
Confidence 8999999999999 888999999999999999975
No 450
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=72.43 E-value=4.3 Score=38.38 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC--CCCC--CcEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ--SVPK--GDAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~~p~--~D~i~~~~~ 257 (353)
+...|||||.|||.++.-.++... =.++.++. ..|.+.|++ .++|..+..--.+ ..|. +|+++.-.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 456899999999999998888763 35888887 666666654 1567666643332 1222 366554443
Q ss_pred cccCCchHHHHHHHHHHHhCC
Q 018576 258 LHDWDDEHCLKLLKNCYKSVP 278 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~ 278 (353)
.-.+--+-+..-++++.+.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 333222223344555655553
No 451
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=72.35 E-value=4.7 Score=36.26 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=46.1
Q ss_pred CeeEEeCCCCCCCCC-----C--cEEEec-cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccc
Q 018576 234 HIEHVAGDMFQSVPK-----G--DAIFLK-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305 (353)
Q Consensus 234 rv~~~~~d~~~~~p~-----~--D~i~~~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~ 305 (353)
+|+|++.|....++. + |+|+++ +..|.++++ +.++++|+|.|++ |... +...
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~Lvv-EtaK-----------fmvd 260 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVV-ETAK-----------FMVD 260 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEE-Ecch-----------hhee
Confidence 478888877654431 2 777555 666666543 5668899977765 4321 0011
Q ss_pred cchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 306 ~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
+.--.. .--.+.+.++++++||+.+..
T Consensus 261 LrKEq~-------~~F~~kv~eLA~~aG~~p~~~ 287 (289)
T PF14740_consen 261 LRKEQL-------QEFVKKVKELAKAAGFKPVTN 287 (289)
T ss_pred CCHHHH-------HHHHHHHHHHHHHCCCccccc
Confidence 111111 112667899999999997653
No 452
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=72.08 E-value=11 Score=34.80 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC----C----CCeEEEecch
Q 018576 159 DPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY----P----YIKGINFDQP 223 (353)
Q Consensus 159 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p----~~~~~~~D~~ 223 (353)
-|+..+.|.+....+. . +....+. .+.+..++++|.|+|.++..+++.. | .+++..++.+
T Consensus 51 Apels~lFGella~~~---~-~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 51 APELSQLFGELLAEQF---L-QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred chhHHHHHHHHHHHHH---H-HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 3666667766543311 1 2222233 4556899999999999998877643 4 5688888873
No 453
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=72.04 E-value=4.6 Score=33.36 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=39.6
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|++.|.+. |-+|=++||..+|+ ...-++++|..|...|++.+.
T Consensus 21 ~~v~~~l~~k---ge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEK---GELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhc---CCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 4567788774 37999999999999 999999999999999999975
No 454
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=71.80 E-value=6.2 Score=35.31 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=48.7
Q ss_pred CCeeEEeCCCCCC---CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 233 PHIEHVAGDMFQS---VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 233 ~rv~~~~~d~~~~---~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
.||.++.+|+.+- -|.+ |-|++..+=..++|.+...++.+|.+-+.||.++++-...
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccc
Confidence 6899999998762 2433 9999999998889999999999999999999999986654
No 455
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=71.34 E-value=8.9 Score=35.66 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=33.3
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchH
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPH 224 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 224 (353)
+++.+..+.+-.+|+|||.|.|.++.-+.-.| ++.+.++|-+.
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq 186 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccch
Confidence 34433335677899999999999998887776 68999999743
No 456
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=71.14 E-value=4.4 Score=35.14 Aligned_cols=45 Identities=31% Similarity=0.378 Sum_probs=39.5
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.||+.|.... |..+..+||+++|+ ....+++=++.|++.|+++..
T Consensus 187 ~IL~~L~~~e--grlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~r 231 (251)
T TIGR02787 187 HIFEELDGNE--GLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 231 (251)
T ss_pred HHHHHhcccc--ccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 5788887621 58999999999999 899999999999999999976
No 457
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=70.80 E-value=12 Score=34.01 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=59.0
Q ss_pred CCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC---CCCCCcEEEeccccccCCc
Q 018576 191 IKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ---SVPKGDAIFLKWILHDWDD 263 (353)
Q Consensus 191 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~---~~p~~D~i~~~~~Lh~~~~ 263 (353)
+.+|.=||+| .|..+..++-.. +.+++.+|+ .+-+.+.... .|++..--+... .+.++|+++-.=.+-. .
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg--a 244 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG--A 244 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC--C
Confidence 5688889999 467777777655 568999998 3444433321 456655544332 3445588776544332 2
Q ss_pred hHHHHHHHHHHHhCCCCCEEEE
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i 285 (353)
....-+.++....|+||+.++=
T Consensus 245 kaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEE
Confidence 2234668888999999998763
No 458
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=70.76 E-value=4 Score=35.34 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|+|-++||+.+|+ ....+.|.|+.|...|++...
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~~ 217 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAVK 217 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999985
No 459
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=70.29 E-value=2.9 Score=29.11 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
.+|..|||+.+|+ ++..++.++..+...|.+.+
T Consensus 32 GlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 32 GKTASEIAEELGR----TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhcCcccchHHH
Confidence 6899999999999 99999999999888888764
No 460
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=70.25 E-value=5 Score=35.17 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=39.5
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|.+.|.+. +..|+++||+.+++ .+.-++|.|..|...|.+.+.
T Consensus 7 ~~Il~~l~~~---~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r~ 51 (240)
T PRK10411 7 QAIVDLLLNH---TSLTTEALAEQLNV----SKETIRRDLNELQTQGKILRN 51 (240)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 4467778775 58999999999999 999999999999999999875
No 461
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=69.60 E-value=7.5 Score=33.41 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 47 GAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 47 ~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|..++..+||+.+|+ +..-++.-|+.|+..|+|+..
T Consensus 32 G~~L~e~~La~~lgV----SRtpVREAL~~L~~eGLV~~~ 67 (221)
T PRK11414 32 GARLITKNLAEQLGM----SITPVREALLRLVSVNALSVA 67 (221)
T ss_pred CCccCHHHHHHHHCC----CchhHHHHHHHHHHCCCEEec
Confidence 368899999999999 899999999999999999986
No 462
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.15 E-value=49 Score=25.30 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCC---CCC-cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSV---PKG-DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~---p~~-D~i~~~~~Lh~~~~~~ 265 (353)
...+|++||-|.=.-....++++ +..++..|+.+. .+. ..++++.-|+++|- -++ |+|.+... .++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiRp-----ppE 82 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIRP-----PPE 82 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecCC-----CHH
Confidence 45699999999775555544444 378899998543 333 67999999999852 234 88877643 455
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
....+-++.++++ ..++|.-...
T Consensus 83 l~~~ildva~aVg--a~l~I~pL~G 105 (129)
T COG1255 83 LQSAILDVAKAVG--APLYIKPLTG 105 (129)
T ss_pred HHHHHHHHHHhhC--CCEEEEecCC
Confidence 5566666666654 5666655543
No 463
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=68.91 E-value=32 Score=31.17 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCC-cEEEeccccccCCchHHH
Q 018576 191 IKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 191 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~ 267 (353)
..++|=+||| .|.++..+++......++++|. ++-++.+.... . .|..+....+ |+|+=.-- . .
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~--i~~~~~~~~g~Dvvid~~G-----~---~ 211 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---V--LDPEKDPRRDYRAIYDASG-----D---P 211 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---c--cChhhccCCCCCEEEECCC-----C---H
Confidence 4578888865 6778888888875445667776 44455444321 1 1111111223 77654311 1 2
Q ss_pred HHHHHHHHhCCCCCEEEEEee
Q 018576 268 KLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~i~e~ 288 (353)
..+..+.+.|+|+|+++++-.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHhhhcCcEEEEEee
Confidence 457788889999999998764
No 464
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=68.11 E-value=4.7 Score=35.65 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=41.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.-.|++.|.+. |.++++|||+.+++ .+.=+||=|+.|+..|++.+.
T Consensus 7 ~~~Il~~l~~~---g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R~ 52 (253)
T COG1349 7 HQKILELLKEK---GKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLRV 52 (253)
T ss_pred HHHHHHHHHHc---CcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEEE
Confidence 34577888886 59999999999999 999999999999999999986
No 465
>PRK09462 fur ferric uptake regulator; Provisional
Probab=68.00 E-value=9.6 Score=30.52 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCC-CCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTK-NKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~-~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|.... .++.|++||-+.+.-. .+.+..-+-|.|+.|+..|++.+..-++ ....|.++
T Consensus 16 T~qR~~Il~~l~~~~-~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~-~~~~y~~~ 83 (148)
T PRK09462 16 TLPRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG-GKSVFELT 83 (148)
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC-CcEEEEeC
Confidence 456777888887531 1489999999988531 1226777899999999999999873111 13566553
No 466
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=67.84 E-value=5.4 Score=28.68 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.=.|...||+++++ .-.+.++.|+.|+..|++...
T Consensus 40 K~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 40 KIVTPYTLASKYGI----KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred cEEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 35799999999999 888999999999999999876
No 467
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=67.68 E-value=9.1 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=37.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhC----CCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQL----PTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~----~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.++-|...|=.. +|.|+.+|.+.+ +. ...-+..+|+-|...|+|++.
T Consensus 5 ~E~~VM~vlW~~---~~~t~~eI~~~l~~~~~~----~~tTv~T~L~rL~~KG~v~~~ 55 (130)
T TIGR02698 5 AEWEVMRVVWTL---GETTSRDIIRILAEKKDW----SDSTIKTLLGRLVDKGCLTTE 55 (130)
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhccCC----cHHHHHHHHHHHHHCCceeee
Confidence 355566666554 488999977776 56 778899999999999999976
No 468
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=67.53 E-value=28 Score=32.01 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCC-chHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchH
Q 018576 189 ANIKQLVDVGGN-LGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEH 265 (353)
Q Consensus 189 ~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~ 265 (353)
....+||=+||| .|..+..++++ ....+++++|. ++-++.+++.... ....+..+.. ..|+|+=.-- ...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~~-g~d~viD~~G-----~~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIPEDL-AVDHAFECVG-----GRG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhhhcc-CCcEEEECCC-----CCc
Confidence 456789999976 45566677775 56678888887 4445555432211 1111111111 1266653211 010
Q ss_pred HHHHHHHHHHhCCCCCEEEEEee
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
....+....+.|++||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 13568888899999999998764
No 469
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=67.50 E-value=5.5 Score=32.00 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=35.4
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
-|+++|-.. +.+|-++||+.+|+ +..-++++|..|...+++
T Consensus 5 ~v~d~L~~~---~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN---GCVTEEDLAELLGI----KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcc
Confidence 467877775 58999999999999 999999999999995554
No 470
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=67.30 E-value=6.1 Score=33.20 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=32.1
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|+|-++||+.+|+ .+.-+.|.|.-|...|++...
T Consensus 149 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~~ 182 (202)
T PRK13918 149 YATHDELAAAVGS----VRETVTKVIGELSREGYIRSG 182 (202)
T ss_pred cCCHHHHHHHhCc----cHHHHHHHHHHHHHCCCEEcC
Confidence 6899999999999 999999999999999999964
No 471
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=67.13 E-value=8.3 Score=34.43 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCCHHHHHHhCC--CCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 49 KLSASDIAAQLP--TKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 49 ~~t~~ela~~~~--~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
..+.++||+.++ + ...-++.-|+.|...|++++. +++.|..|..+
T Consensus 137 ~~~~~~ia~~l~p~i----s~~ev~~sL~~L~~~glikk~-----~~g~y~~t~~~ 183 (271)
T TIGR02147 137 ADDPEELAKRCFPKI----SAEQVKESLDLLERLGLIKKN-----EDGFYKQTDKA 183 (271)
T ss_pred CCCHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCeeEC-----CCCcEEeecce
Confidence 447889999998 6 788899999999999999986 25789888654
No 472
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=66.92 E-value=43 Score=31.54 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=58.2
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc--hH--HHhhCCCC----CCeeEEeCCCCCCCCCC-cEEEeccccccCC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ--PH--VIEHAPLH----PHIEHVAGDMFQSVPKG-DAIFLKWILHDWD 262 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~--~~~~a~~~----~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~ 262 (353)
.+||=|+-..|.+++.++...|. ...|. .+ ...+++.. +.+++. +..++.|.+ |+|++..-=.
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~~PK~--- 117 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIKVPKT--- 117 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEEeCCC---
Confidence 38999999999999999965553 33564 11 12222222 123333 333456666 8877663321
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
-......|..+.+.|.||+.+++.+..
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 345678899999999999998876654
No 473
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=66.57 E-value=4.6 Score=25.00 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=16.5
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHH
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILR 75 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~ 75 (353)
+.|+.+||+.+|+ ...-+.|+|+
T Consensus 21 G~si~~IA~~~gv----sr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGV----SRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHh
Confidence 4999999999999 7777777664
No 474
>PF14502 HTH_41: Helix-turn-helix domain
Probab=66.47 E-value=12 Score=23.59 Aligned_cols=33 Identities=9% Similarity=0.227 Sum_probs=31.1
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|++|+++++++ ...-++.-|+.|...|.+..+
T Consensus 7 ~tI~e~~~~~~v----s~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 7 PTISEYSEKFGV----SRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred CCHHHHHHHhCc----chhHHHHHHHHHHHCCcEEee
Confidence 489999999999 899999999999999999987
No 475
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=66.34 E-value=7 Score=33.60 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=38.1
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|++.+..+. ++.|..|||+.+++ .+.-++..+..|+..|++...
T Consensus 166 ~Vl~~~~~g~--~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPG--VQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCC--CCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 4667776621 25899999999999 999999999999999999976
No 476
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=66.05 E-value=8.9 Score=29.67 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=37.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
-|.|.++||..++- +..-++.-|..+...|+++.. +++.|.++
T Consensus 52 ipy~~e~LA~~~~~----~~~~V~~AL~~f~k~glIe~~-----ed~~i~i~ 94 (121)
T PF09681_consen 52 IPYTAEMLALEFDR----PVDTVRLALAVFQKLGLIEID-----EDGVIYIP 94 (121)
T ss_pred CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe-----cCCeEEee
Confidence 49999999999999 999999999999999999986 25666555
No 477
>PRK13699 putative methylase; Provisional
Probab=66.04 E-value=9.6 Score=33.08 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred eeEEeCCCCC---CCCCC--cEEEec-------------cccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 235 IEHVAGDMFQ---SVPKG--DAIFLK-------------WILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 235 v~~~~~d~~~---~~p~~--D~i~~~-------------~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++..+|..+ .+|.. |+|+.. ..-.....+-...++++++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
No 478
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=65.96 E-value=9.4 Score=33.04 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.|-++||..+|+ .+.-+.|.|+.|...|++...
T Consensus 179 ~lt~~~IA~~lGi----sretlsR~L~~L~~~GlI~~~ 212 (230)
T PRK09391 179 PMSRRDIADYLGL----TIETVSRALSQLQDRGLIGLS 212 (230)
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 6899999999999 999999999999999999864
No 479
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=65.68 E-value=12 Score=30.88 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=43.2
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCC-CCCCcCcHHHHHHHHhcccceeee
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTK-NKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~-~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+--+.-|++.|...+ +++|+++|.+.+.-. .+.+..-+-|.|+.|+..|+|.+.
T Consensus 25 T~qR~~IL~~l~~~~--~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQP--GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhcC--CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 556778889998753 699999999998542 122677889999999999999987
No 480
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=65.18 E-value=37 Score=27.24 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=46.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCCC----C-cEEE--eccccccCCc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPK----G-DAIF--LKWILHDWDD 263 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~----~-D~i~--~~~~Lh~~~~ 263 (353)
..-|||+|=|.|..=-.|.+.+|+-++.++|..-.+--..--+.=+++.||+.+-.|. + .+.+ .-.-.|+ .
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~--~ 106 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGD--K 106 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S---H
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCC--c
Confidence 3789999999999999999999999999999621100000002346777777652221 1 2332 2223332 2
Q ss_pred hHHHHHH----HHHHHhCCCCCEEEEEeee
Q 018576 264 EHCLKLL----KNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 264 ~~~~~~L----~~~~~~L~pgG~l~i~e~~ 289 (353)
++-.... .-+..+|.|||.++--.+.
T Consensus 107 ~~d~a~a~~lspli~~~la~gGi~vS~~pl 136 (160)
T PF12692_consen 107 EKDDATAAWLSPLIAPVLAPGGIMVSGQPL 136 (160)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred chhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 2222222 3345677899988865544
No 481
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=65.06 E-value=8.2 Score=31.23 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=48.7
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC---CCC----CCeeEE-----eCCCCCCCCCCcEEEeccccc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA---PLH----PHIEHV-----AGDMFQSVPKGDAIFLKWILH 259 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~----~rv~~~-----~~d~~~~~p~~D~i~~~~~Lh 259 (353)
+|.=||+|.++.+.+..-..-+.+++.... ++.++.. +.. +.+.+. ..|+.+-+..+|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia---- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA---- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec----
Confidence 356689998776665443333468888887 3333322 221 212111 22322223334888766
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.+....+.+++++...++++-.+++.
T Consensus 77 -vPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 77 -VPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred -ccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 34455678999999999877666653
No 482
>COG3373 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.68 E-value=6.2 Score=28.29 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=45.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHH----------HHhcccceeeeccCCCCccceeccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILR----------LLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~----------~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
.+-+|+..|-+-=| ...-++||+++++- +|..++.-|. .|..+|++++++++| --.|++|+.+
T Consensus 18 LRrkiL~yLy~iYP-~~~YLSEIsR~V~S----DPSNV~GcL~Glg~RYnGe~SLi~LGLVe~~~~nG--fKyykltdyg 90 (108)
T COG3373 18 LRRKILFYLYSIYP-YRSYLSEISRAVKS----DPSNVKGCLEGLGVRYNGEESLIGLGLVEVEQKNG--FKYYKLTEYG 90 (108)
T ss_pred HHHHHHHHHHHHcc-chhHHHHHHHHHcC----CchHHHHHHHhcCCcccCchhhhhcceeEeeecCC--EEEEehhHHH
Confidence 44455555544222 14568999999999 8888887765 467789999986555 5678888766
Q ss_pred cc
Q 018576 103 KY 104 (353)
Q Consensus 103 ~~ 104 (353)
+.
T Consensus 91 kk 92 (108)
T COG3373 91 KK 92 (108)
T ss_pred HH
Confidence 53
No 483
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=64.54 E-value=3.9 Score=34.28 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=40.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|.+.|... +..++++||+.+++ ...-++|=|+.|+..|.+.+.
T Consensus 9 ~~~Il~~l~~~---~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r~ 54 (185)
T PRK04424 9 QKALQELIEEN---PFITDEELAEKFGV----SIQTIRLDRMELGIPELRERI 54 (185)
T ss_pred HHHHHHHHHHC---CCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHHH
Confidence 44567788876 58999999999999 999999999999999999875
No 484
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=64.42 E-value=4.6 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=33.5
Q ss_pred CCCCHHHH---HHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 48 AKLSASDI---AAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 48 ~~~t~~el---a~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
+++++..| .+.+|+ ++..++.-|--|++.|+++.. +.|. ...|++|+.
T Consensus 19 ~~i~~~~Li~ll~~~Gv----~e~avR~alsRl~~~G~L~~~-r~Gr-~~~Y~Lt~~ 69 (70)
T PF07848_consen 19 GWIWVASLIRLLAAFGV----SESAVRTALSRLVRRGWLESE-RRGR-RSYYRLTER 69 (70)
T ss_dssp S-EEHHHHHHHHCCTT------HHHHHHHHHHHHHTTSEEEE-CCCT-EEEEEE-HH
T ss_pred CceeHHHHHHHHHHcCC----ChHHHHHHHHHHHHcCceeee-ecCc-cceEeeCCC
Confidence 45555554 555677 999999999999999999987 4443 567998864
No 485
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=64.40 E-value=6.9 Score=33.76 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=32.0
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.|-++||+.+|+ .++.+.|.|.-|...|+++..
T Consensus 169 ~~t~~~lA~~lG~----sretvsR~L~~L~~~G~I~~~ 202 (226)
T PRK10402 169 HEKHTQAAEYLGV----SYRHLLYVLAQFIQDGYLKKS 202 (226)
T ss_pred cchHHHHHHHHCC----cHHHHHHHHHHHHHCCCEEee
Confidence 5789999999999 999999999999999999975
No 486
>PRK00215 LexA repressor; Validated
Probab=64.38 E-value=8.4 Score=32.70 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+.|..|||+.+|++ +...+.++|+.|+..|++++.
T Consensus 22 ~~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 22 YPPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 478999999999984 567889999999999999986
No 487
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=64.09 E-value=5.5 Score=24.06 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=20.1
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
+.|+++||+.+|+ ++..+.|..+...
T Consensus 8 ~~~l~~iA~~~g~----S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 8 KLTLEDIAEQAGF----SPSYFSRLFKKET 33 (42)
T ss_dssp S--HHHHHHHHTS-----HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 7999999999999 8999998887543
No 488
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.08 E-value=11 Score=30.25 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=48.2
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCC-CCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTK-NKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~-~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
--+..|++.|..++ ++.|+++|=+.+.-. .+....-+.|-|+.|+..|+|.+..-+| +..+|.++..
T Consensus 21 ~qR~~vl~~L~~~~--~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~~-~~~~y~~~~~ 88 (145)
T COG0735 21 PQRLAVLELLLEAD--GHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFEG-GKTRYELNSE 88 (145)
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeCC-CEEEEecCCC
Confidence 35778899999864 579999998887531 2226777899999999999999984222 1345655544
No 489
>PRK11642 exoribonuclease R; Provisional
Probab=63.83 E-value=8.8 Score=40.00 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=42.0
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.|++.|...+ .|++..+|++.++++.......+++.|+.|...|.+.+. ..+.|.+.
T Consensus 23 ~Il~~l~~~~--~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~-----~~~~~~~~ 79 (813)
T PRK11642 23 FILEHLTKRE--KPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFT-----RRQCYALP 79 (813)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEc-----CCceEecC
Confidence 3666776532 599999999999994323346699999999999999875 13456554
No 490
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.62 E-value=73 Score=25.76 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCchHH--HHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CCCCCcEEEeccccccCCchHH
Q 018576 190 NIKQLVDVGGNLGVT--LQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SVPKGDAIFLKWILHDWDDEHC 266 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~--~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~~~~ 266 (353)
.+.+||=||||.=+. +..|++. +.++++++. +..+...+.+.+.+....+.+ .+...|+|++. -++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp-~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaa-----T~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP-EICKEMKELPYITWKQKTFSNDDIKDAHLIYAA-----TNQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC-ccCHHHHhccCcEEEecccChhcCCCceEEEEC-----CCCHHH
Confidence 468999999996544 2344443 457777753 333322233456665555544 34444777764 345555
Q ss_pred HHHHHHHHHh
Q 018576 267 LKLLKNCYKS 276 (353)
Q Consensus 267 ~~~L~~~~~~ 276 (353)
...+....+.
T Consensus 84 N~~i~~~a~~ 93 (157)
T PRK06719 84 NMMVKQAAHD 93 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 491
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=63.00 E-value=43 Score=32.79 Aligned_cols=51 Identities=14% Similarity=-0.052 Sum_probs=34.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC----CCeEEEecc-hHHHhhC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP----YIKGINFDQ-PHVIEHA 229 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a 229 (353)
.+-+++.+. .....+|.|-.||+|.++....+... ++...|++. +.+...+
T Consensus 175 ~~liv~~l~-~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 175 SELIVELLD-PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLA 230 (489)
T ss_pred HHHHHHHcC-CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHH
Confidence 444445444 34556999999999998887666542 367889986 4444443
No 492
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=62.47 E-value=7.5 Score=32.51 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec-cCCCCccceeccccccccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL-DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~-~~g~~~~~y~~t~~~~~l~ 106 (353)
.+|..++|..++. .+....|+|..|...|++++.. ++ +....+|+.+..++
T Consensus 19 ~~t~~ela~~l~~----S~qta~R~l~~le~~~~I~R~~~~~---Gq~i~iTekG~~~L 70 (214)
T COG1339 19 KVTSSELAKRLGV----SSQTAARKLKELEDEGYITRTISKR---GQLITITEKGIDLL 70 (214)
T ss_pred cccHHHHHHHhCc----CcHHHHHHHHhhccCCcEEEEecCC---CcEEEehHhHHHHH
Confidence 4799999999999 8889999999999999999873 22 34455555554444
No 493
>PRK13239 alkylmercury lyase; Provisional
Probab=62.40 E-value=6.7 Score=33.32 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
+-.-|+..|.++ .|.|+++||+.+|. +.+.+++.|+.|.
T Consensus 23 ~~~~llr~la~G---~pvt~~~lA~~~~~----~~~~v~~~L~~l~ 61 (206)
T PRK13239 23 LLVPLLRLLAKG---RPVSVTTLAAALGW----PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhCC----CHHHHHHHHHhCC
Confidence 444567778875 69999999999999 7887777777654
No 494
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=62.15 E-value=8.8 Score=25.77 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCHHHHHHhCCCCCCCC-cCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 49 KLSASDIAAQLPTKNKDA-PTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~-~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
+++.+++.+..|. + ......-|+.+...|+++.+ ++.+++|+.|.
T Consensus 20 Gi~~~~~~~~~g~----~~~~~~~~~l~~l~~~Gll~~~------~~~l~lT~~G~ 65 (66)
T PF06969_consen 20 GIDLSEFEQRFGI----DFAEEFQKELEELQEDGLLEID------GGRLRLTEKGR 65 (66)
T ss_dssp EEEHHHHHHHTT------THHH-HHHHHHHHHTTSEEE-------SSEEEE-TTTG
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHHCCCEEEe------CCEEEECcccC
Confidence 6899999999998 4 23336778899999999986 78999998764
No 495
>PRK01381 Trp operon repressor; Provisional
Probab=61.70 E-value=10 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHH
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L 77 (353)
.+.+++|+..|.. |++|--|||+.+|+ ...-+.|.-++|
T Consensus 41 l~~R~~I~~~L~~----g~~sQREIa~~lGv----SiaTITRgsn~L 79 (99)
T PRK01381 41 LGTRVRIVEELLR----GELSQREIKQELGV----GIATITRGSNSL 79 (99)
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHhCC----ceeeehhhHHHh
Confidence 3678999999998 48999999999999 555555544443
No 496
>PRK08507 prephenate dehydrogenase; Validated
Probab=61.67 E-value=34 Score=30.44 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=47.0
Q ss_pred eEEEEcCCc--hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHH
Q 018576 193 QLVDVGGNL--GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKL 269 (353)
Q Consensus 193 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~ 269 (353)
+|.=||+|. +.++..+.+.-...+++++|. ++.++.+.+..-+... .+.. ...+.|+|++. .+++....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~-~~~~-~~~~aD~Vila-----vp~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI-VSFE-ELKKCDVIFLA-----IPVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc-CCHH-HHhcCCEEEEe-----CcHHHHHHH
Confidence 466678774 445555655433457888898 4445444332211111 1211 12224888776 345667788
Q ss_pred HHHHHHhCCCCCEEE
Q 018576 270 LKNCYKSVPEDGKVI 284 (353)
Q Consensus 270 L~~~~~~L~pgG~l~ 284 (353)
++++.. ++|+..++
T Consensus 75 ~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 75 LPKLLD-IKENTTII 88 (275)
T ss_pred HHHHhc-cCCCCEEE
Confidence 888888 88876443
No 497
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=61.52 E-value=11 Score=33.14 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=33.2
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..+ |-.+||+.+|+ ...-++.-|+.|+..|+|+..+
T Consensus 29 ~~LPsE~eLa~~~gV----SRtpVREAL~~L~~eGlV~~~~ 65 (251)
T PRK09990 29 QALPSERRLCEKLGF----SRSALREGLTVLRGRGIIETAQ 65 (251)
T ss_pred CcCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC
Confidence 588 78899999999 8999999999999999999873
No 498
>PLN02494 adenosylhomocysteinase
Probab=60.70 E-value=26 Score=33.95 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=56.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecchH-HHhhCCCCCCeeEEeCCCCCCCCCCcEEEec
Q 018576 178 MSNILESYKGFANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQPH-VIEHAPLHPHIEHVAGDMFQSVPKGDAIFLK 255 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~ 255 (353)
+..+.+.-...-.+.+|+=+|+| .|......++.+ +.+++++|... ....+.. ..+.+. ++.+.++.+|+++..
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~-~G~~vv--~leEal~~ADVVI~t 316 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALM-EGYQVL--TLEDVVSEADIFVTT 316 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHh-cCCeec--cHHHHHhhCCEEEEC
Confidence 44444433311346899999999 455666666666 56898888732 2222222 122222 222223445988863
Q ss_pred cccccCCchHHHHH-HHHHHHhCCCCCEEEEEee
Q 018576 256 WILHDWDDEHCLKL-LKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~-L~~~~~~L~pgG~l~i~e~ 288 (353)
-- ...+ ..+..+.||||+.|+.+-.
T Consensus 317 TG--------t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 317 TG--------NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CC--------CccchHHHHHhcCCCCCEEEEcCC
Confidence 11 1233 4778889999999988765
No 499
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=60.34 E-value=6.6 Score=35.57 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHH-HHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILR-LLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~-~L~~~g~l~~~ 86 (353)
++.+++++|+.+|. ++..+++.++ .|...|++...
T Consensus 254 ~~~~~~~ia~~lg~----~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 254 GPVGLKTLAAALGE----DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CcccHHHHHHHhCC----CcchHHHhhhHHHHHcCCcccC
Confidence 58999999999999 9999999999 79999999754
No 500
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=59.52 E-value=4.2 Score=29.57 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=33.6
Q ss_pred CeEEEe-cc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 215 IKGINF-DQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 215 ~~~~~~-D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
.+++.. +. ++..+...+.-.+.+...+..+-..++|+|++. .+++....+++.+ ..+.++..++
T Consensus 26 ~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila-----v~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 26 HEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA-----VKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp GEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE------S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred eeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE-----ECHHHHHHHHHHH-hhccCCCEEE
Confidence 466634 66 555544433223444433322222235999887 4456677888888 6666655544
Done!