Query 018576
Match_columns 353
No_of_seqs 165 out of 2254
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 8.2E-57 2.8E-61 417.1 30.1 331 9-353 5-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 3.4E-55 1.2E-59 407.8 36.7 348 5-353 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 6.8E-55 2.3E-59 406.5 36.2 349 5-353 14-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 1E-49 3.5E-54 369.3 33.4 323 10-353 20-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 8E-50 2.7E-54 372.7 28.6 327 6-353 32-368 (369)
6 3i53_A O-methyltransferase; CO 100.0 1.7E-49 5.8E-54 365.8 24.4 316 14-353 7-331 (332)
7 1fp1_D Isoliquiritigenin 2'-O- 100.0 4E-48 1.4E-52 361.8 31.3 343 10-353 20-372 (372)
8 1zg3_A Isoflavanone 4'-O-methy 100.0 4E-48 1.4E-52 360.1 30.8 340 8-353 6-358 (358)
9 2ip2_A Probable phenazine-spec 100.0 3.5E-48 1.2E-52 357.3 29.6 319 11-353 7-333 (334)
10 1fp2_A Isoflavone O-methyltran 100.0 1E-47 3.5E-52 356.5 31.0 336 8-353 12-352 (352)
11 3dp7_A SAM-dependent methyltra 100.0 9.1E-46 3.1E-50 344.6 23.8 324 9-353 12-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 3.3E-45 1.1E-49 342.5 23.1 325 9-353 13-355 (374)
13 2r3s_A Uncharacterized protein 100.0 2.3E-44 7.8E-49 331.9 26.0 315 14-352 8-333 (335)
14 1tw3_A COMT, carminomycin 4-O- 100.0 1.6E-44 5.4E-49 336.2 24.1 324 10-353 17-355 (360)
15 1x19_A CRTF-related protein; m 100.0 9.9E-44 3.4E-48 330.6 29.2 311 10-353 28-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 1.2E-43 4E-48 329.4 26.4 320 4-353 16-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 6.7E-21 2.3E-25 168.4 14.1 163 188-352 68-256 (261)
18 3dtn_A Putative methyltransfer 99.8 4.8E-20 1.7E-24 160.4 16.2 174 179-353 33-225 (234)
19 3dlc_A Putative S-adenosyl-L-m 99.8 1.2E-19 4E-24 156.0 6.3 168 179-351 34-212 (219)
20 3dh0_A SAM dependent methyltra 99.8 3E-18 1E-22 147.5 14.2 155 179-353 27-192 (219)
21 1ve3_A Hypothetical protein PH 99.8 3.9E-19 1.3E-23 153.8 8.3 161 190-353 38-226 (227)
22 3ou2_A SAM-dependent methyltra 99.8 8.1E-18 2.8E-22 144.4 15.8 160 179-343 35-206 (218)
23 3hnr_A Probable methyltransfer 99.8 5.8E-18 2E-22 145.7 14.9 170 180-353 36-211 (220)
24 3ujc_A Phosphoethanolamine N-m 99.8 3.2E-18 1.1E-22 151.5 12.4 156 178-343 44-207 (266)
25 1vl5_A Unknown conserved prote 99.8 3.1E-18 1E-22 151.5 12.0 158 174-342 22-190 (260)
26 3dli_A Methyltransferase; PSI- 99.7 2.3E-17 7.8E-22 144.1 15.9 149 180-343 31-185 (240)
27 2o57_A Putative sarcosine dime 99.7 2.1E-17 7.2E-22 149.0 14.7 153 179-342 68-234 (297)
28 3hem_A Cyclopropane-fatty-acyl 99.7 2.1E-17 7E-22 149.5 14.2 164 178-344 61-245 (302)
29 3bus_A REBM, methyltransferase 99.7 2.2E-17 7.6E-22 146.9 14.1 157 178-343 50-217 (273)
30 1kpg_A CFA synthase;, cyclopro 99.7 3.3E-17 1.1E-21 146.9 15.2 162 179-343 54-229 (287)
31 1xtp_A LMAJ004091AAA; SGPP, st 99.7 6.4E-18 2.2E-22 148.7 9.5 149 179-343 83-239 (254)
32 3vc1_A Geranyl diphosphate 2-C 99.7 4.4E-17 1.5E-21 148.0 15.2 162 170-342 97-269 (312)
33 3h2b_A SAM-dependent methyltra 99.7 9.4E-18 3.2E-22 142.6 10.1 144 191-350 42-191 (203)
34 3pfg_A N-methyltransferase; N, 99.7 1.4E-17 4.9E-22 147.4 11.4 163 189-353 49-248 (263)
35 3ege_A Putative methyltransfer 99.7 7.6E-17 2.6E-21 142.6 15.5 151 179-342 24-178 (261)
36 1xxl_A YCGJ protein; structura 99.7 3.2E-17 1.1E-21 143.2 12.3 153 179-342 11-174 (239)
37 3f4k_A Putative methyltransfer 99.7 4E-17 1.4E-21 143.9 12.8 152 179-343 35-197 (257)
38 1nkv_A Hypothetical protein YJ 99.7 3.4E-17 1.2E-21 144.2 12.2 152 179-342 26-187 (256)
39 3kkz_A Uncharacterized protein 99.7 4.2E-17 1.4E-21 144.7 11.9 151 180-343 36-197 (267)
40 3mgg_A Methyltransferase; NYSG 99.7 1.6E-17 5.6E-22 148.1 9.1 152 188-342 35-198 (276)
41 2fk8_A Methoxy mycolic acid sy 99.7 9.4E-17 3.2E-21 146.2 14.2 162 178-342 79-254 (318)
42 3bxo_A N,N-dimethyltransferase 99.7 4.9E-17 1.7E-21 141.6 11.6 163 189-353 39-238 (239)
43 1pjz_A Thiopurine S-methyltran 99.7 3.7E-17 1.3E-21 139.1 10.1 141 180-342 13-176 (203)
44 3i9f_A Putative type 11 methyl 99.7 2.4E-17 8.3E-22 136.0 7.9 146 181-352 9-158 (170)
45 3g2m_A PCZA361.24; SAM-depende 99.7 5.8E-17 2E-21 146.3 11.0 172 177-352 71-290 (299)
46 3ocj_A Putative exported prote 99.7 5.5E-17 1.9E-21 146.9 10.9 155 188-343 116-292 (305)
47 2ex4_A Adrenal gland protein A 99.7 3.5E-17 1.2E-21 143.0 9.1 138 190-343 79-226 (241)
48 3l8d_A Methyltransferase; stru 99.7 2.5E-16 8.4E-21 137.5 14.2 142 189-342 52-200 (242)
49 2qm3_A Predicted methyltransfe 99.7 9.8E-17 3.4E-21 149.2 12.1 215 36-289 47-279 (373)
50 2p7i_A Hypothetical protein; p 99.7 1.3E-16 4.3E-21 139.7 11.9 149 189-342 41-199 (250)
51 3e23_A Uncharacterized protein 99.7 8.7E-17 3E-21 137.5 10.6 138 188-342 41-182 (211)
52 4fsd_A Arsenic methyltransfera 99.7 1.5E-16 5.1E-21 148.5 12.9 144 189-341 82-250 (383)
53 2qe6_A Uncharacterized protein 99.7 2.6E-16 8.9E-21 140.1 13.8 140 190-338 77-238 (274)
54 3jwg_A HEN1, methyltransferase 99.7 2.5E-16 8.5E-21 135.5 13.2 143 188-338 27-188 (219)
55 3gu3_A Methyltransferase; alph 99.7 8.8E-17 3E-21 144.0 10.1 159 180-341 12-189 (284)
56 3lcc_A Putative methyl chlorid 99.7 1.4E-16 4.8E-21 138.6 11.0 131 192-343 68-208 (235)
57 3g5l_A Putative S-adenosylmeth 99.7 1.6E-16 5.3E-21 139.8 11.1 159 180-342 35-216 (253)
58 3jwh_A HEN1; methyltransferase 99.7 1.3E-16 4.4E-21 137.1 9.9 143 188-338 27-188 (217)
59 3bkw_A MLL3908 protein, S-aden 99.7 5.9E-16 2E-20 135.0 14.2 159 180-342 34-214 (243)
60 3bkx_A SAM-dependent methyltra 99.7 6.1E-16 2.1E-20 137.7 13.4 161 179-342 33-219 (275)
61 3ccf_A Cyclopropane-fatty-acyl 99.7 3.3E-16 1.1E-20 139.9 10.8 153 180-342 48-210 (279)
62 4htf_A S-adenosylmethionine-de 99.7 3.6E-16 1.2E-20 140.1 10.6 156 179-343 59-233 (285)
63 2p35_A Trans-aconitate 2-methy 99.6 2.4E-16 8.2E-21 139.0 8.7 153 180-336 24-184 (259)
64 3sm3_A SAM-dependent methyltra 99.6 9.9E-16 3.4E-20 132.8 12.5 149 189-342 29-207 (235)
65 3g07_A 7SK snRNA methylphospha 99.6 1.1E-16 3.7E-21 144.1 5.6 145 190-342 46-269 (292)
66 3e8s_A Putative SAM dependent 99.6 5.4E-16 1.8E-20 133.7 9.7 153 180-341 43-208 (227)
67 3cgg_A SAM-dependent methyltra 99.6 3E-15 1E-19 125.8 13.0 132 180-342 38-175 (195)
68 2xvm_A Tellurite resistance pr 99.6 3E-15 1E-19 126.4 12.8 141 180-341 23-172 (199)
69 2yqz_A Hypothetical protein TT 99.6 1.1E-15 3.6E-20 135.1 10.4 147 188-341 37-195 (263)
70 2zfu_A Nucleomethylin, cerebra 99.6 2.5E-15 8.4E-20 128.8 12.2 132 179-353 56-190 (215)
71 1vlm_A SAM-dependent methyltra 99.6 1.8E-15 6E-20 130.2 11.0 137 191-342 48-188 (219)
72 1y8c_A S-adenosylmethionine-de 99.6 6.4E-16 2.2E-20 134.9 7.9 97 190-288 37-143 (246)
73 4hg2_A Methyltransferase type 99.6 2.8E-15 9.5E-20 131.9 11.6 97 190-291 39-139 (257)
74 3ggd_A SAM-dependent methyltra 99.6 9.8E-16 3.4E-20 134.0 8.3 149 188-341 54-218 (245)
75 3d2l_A SAM-dependent methyltra 99.6 4.8E-15 1.6E-19 129.2 12.5 95 190-287 33-137 (243)
76 2p8j_A S-adenosylmethionine-de 99.6 9.5E-16 3.3E-20 130.6 7.7 150 188-339 21-180 (209)
77 3cc8_A Putative methyltransfer 99.6 1.8E-15 6.2E-20 130.6 9.0 156 179-343 23-186 (230)
78 2aot_A HMT, histamine N-methyl 99.6 3E-15 1E-19 134.6 9.2 142 189-339 51-218 (292)
79 2gb4_A Thiopurine S-methyltran 99.6 1E-14 3.4E-19 128.1 12.0 132 189-341 67-226 (252)
80 3g5t_A Trans-aconitate 3-methy 99.6 4.6E-15 1.6E-19 133.8 10.1 141 189-335 35-197 (299)
81 3thr_A Glycine N-methyltransfe 99.6 4.4E-15 1.5E-19 133.4 9.1 100 188-289 55-177 (293)
82 1ri5_A MRNA capping enzyme; me 99.6 5.8E-15 2E-19 132.8 8.2 153 189-342 63-250 (298)
83 2i62_A Nicotinamide N-methyltr 99.5 1.1E-14 3.8E-19 128.6 8.1 140 189-343 55-240 (265)
84 4e2x_A TCAB9; kijanose, tetron 99.5 1.2E-14 4.2E-19 137.1 8.8 151 177-343 95-254 (416)
85 3giw_A Protein of unknown func 99.5 7.9E-14 2.7E-18 122.2 13.2 141 190-338 78-243 (277)
86 1wzn_A SAM-dependent methyltra 99.5 3.1E-13 1E-17 118.5 16.4 106 180-288 32-146 (252)
87 2a14_A Indolethylamine N-methy 99.5 5.8E-15 2E-19 130.7 5.3 140 188-342 53-238 (263)
88 3q87_B N6 adenine specific DNA 99.5 3.4E-13 1.2E-17 111.2 15.6 118 190-343 23-150 (170)
89 2g72_A Phenylethanolamine N-me 99.5 7.6E-15 2.6E-19 131.7 6.0 138 190-342 71-256 (289)
90 2kw5_A SLR1183 protein; struct 99.5 5.8E-14 2E-18 118.9 10.9 131 193-342 32-171 (202)
91 3mq2_A 16S rRNA methyltransfer 99.5 8.9E-14 3E-18 119.3 12.0 143 188-343 25-185 (218)
92 3uwp_A Histone-lysine N-methyl 99.5 5E-14 1.7E-18 129.5 10.4 113 178-294 162-295 (438)
93 3ofk_A Nodulation protein S; N 99.5 6.7E-15 2.3E-19 126.1 4.4 100 188-289 49-156 (216)
94 3m70_A Tellurite resistance pr 99.5 6.2E-14 2.1E-18 125.5 10.9 140 180-340 111-258 (286)
95 3e05_A Precorrin-6Y C5,15-meth 99.5 2.7E-13 9.2E-18 115.1 14.1 120 180-334 31-160 (204)
96 3grz_A L11 mtase, ribosomal pr 99.5 7.4E-14 2.5E-18 118.6 10.0 130 189-353 59-196 (205)
97 1fbn_A MJ fibrillarin homologu 99.5 2.6E-13 8.8E-18 117.5 12.8 140 188-352 72-226 (230)
98 3p2e_A 16S rRNA methylase; met 99.5 7.4E-14 2.5E-18 120.5 9.3 145 189-343 23-186 (225)
99 2b3t_A Protein methyltransfera 99.5 6E-13 2E-17 118.5 14.5 142 179-352 100-274 (276)
100 2gs9_A Hypothetical protein TT 99.5 1.1E-13 3.9E-18 118.0 9.0 138 180-333 28-171 (211)
101 1af7_A Chemotaxis receptor met 99.5 1.9E-13 6.4E-18 121.0 10.0 96 190-285 105-250 (274)
102 2vdw_A Vaccinia virus capping 99.5 1.6E-13 5.4E-18 123.7 9.6 151 190-342 48-246 (302)
103 3orh_A Guanidinoacetate N-meth 99.5 1.2E-14 4.3E-19 126.4 1.9 133 189-339 59-207 (236)
104 1dus_A MJ0882; hypothetical pr 99.5 5.8E-13 2E-17 111.5 12.1 141 179-353 42-193 (194)
105 3hm2_A Precorrin-6Y C5,15-meth 99.4 2.7E-13 9.3E-18 112.2 9.9 101 180-288 16-128 (178)
106 3bgv_A MRNA CAP guanine-N7 met 99.4 3.6E-13 1.2E-17 122.1 10.7 99 190-289 34-157 (313)
107 3htx_A HEN1; HEN1, small RNA m 99.4 6.8E-13 2.3E-17 130.7 13.0 107 181-289 713-836 (950)
108 4dzr_A Protein-(glutamine-N5) 99.4 7.7E-14 2.6E-18 119.0 5.6 143 179-350 19-201 (215)
109 3iv6_A Putative Zn-dependent a 99.4 2.5E-13 8.6E-18 119.2 7.7 108 178-289 34-150 (261)
110 1zx0_A Guanidinoacetate N-meth 99.4 7.5E-14 2.6E-18 121.4 3.8 100 189-289 59-172 (236)
111 1yzh_A TRNA (guanine-N(7)-)-me 99.4 2.1E-12 7.2E-17 110.4 11.5 98 190-287 41-156 (214)
112 1nt2_A Fibrillarin-like PRE-rR 99.4 3.5E-12 1.2E-16 108.8 12.1 96 188-287 55-161 (210)
113 4df3_A Fibrillarin-like rRNA/T 99.4 9.5E-13 3.2E-17 113.2 8.2 136 184-344 72-219 (233)
114 3njr_A Precorrin-6Y methylase; 99.4 8.1E-12 2.8E-16 106.0 14.0 121 181-340 47-178 (204)
115 2pxx_A Uncharacterized protein 99.4 4.4E-13 1.5E-17 114.3 5.6 101 189-290 41-162 (215)
116 1g8a_A Fibrillarin-like PRE-rR 99.3 9.4E-12 3.2E-16 107.3 13.1 140 188-352 71-225 (227)
117 1yb2_A Hypothetical protein TA 99.3 8.8E-13 3E-17 117.4 6.5 125 180-341 101-236 (275)
118 3m33_A Uncharacterized protein 99.3 5.5E-13 1.9E-17 115.1 5.0 114 189-342 47-167 (226)
119 2nxc_A L11 mtase, ribosomal pr 99.3 1.8E-12 6.3E-17 113.9 8.2 124 189-348 119-250 (254)
120 3hp7_A Hemolysin, putative; st 99.3 9.4E-12 3.2E-16 110.4 12.7 148 179-342 74-232 (291)
121 2ipx_A RRNA 2'-O-methyltransfe 99.3 2.7E-12 9.3E-17 111.3 8.8 132 188-343 75-218 (233)
122 3evz_A Methyltransferase; NYSG 99.3 6.3E-12 2.2E-16 108.6 10.9 126 188-342 53-206 (230)
123 3fpf_A Mtnas, putative unchara 99.3 3.1E-12 1.1E-16 113.4 9.0 95 188-288 120-223 (298)
124 3mti_A RRNA methylase; SAM-dep 99.3 2.1E-12 7.2E-17 107.7 7.4 100 188-289 20-137 (185)
125 3mb5_A SAM-dependent methyltra 99.3 5E-12 1.7E-16 111.0 10.0 127 179-342 83-222 (255)
126 4dcm_A Ribosomal RNA large sub 99.3 3.2E-12 1.1E-16 118.5 9.0 108 180-288 213-335 (375)
127 3eey_A Putative rRNA methylase 99.3 2.6E-12 9E-17 108.2 7.5 102 188-289 20-141 (197)
128 2plw_A Ribosomal RNA methyltra 99.3 1.1E-11 3.7E-16 104.8 11.3 106 178-287 10-154 (201)
129 2fca_A TRNA (guanine-N(7)-)-me 99.3 4.3E-12 1.5E-16 108.5 8.7 98 190-287 38-153 (213)
130 3tfw_A Putative O-methyltransf 99.3 4E-11 1.4E-15 104.9 14.9 98 188-290 61-173 (248)
131 1l3i_A Precorrin-6Y methyltran 99.3 4.4E-12 1.5E-16 105.9 8.2 119 181-336 25-154 (192)
132 3id6_C Fibrillarin-like rRNA/T 99.3 1.7E-11 5.8E-16 105.6 11.9 133 188-344 74-218 (232)
133 3bwc_A Spermidine synthase; SA 99.3 4.4E-12 1.5E-16 114.4 8.6 129 189-342 94-240 (304)
134 1xdz_A Methyltransferase GIDB; 99.3 3E-12 1E-16 111.6 7.2 120 189-341 69-201 (240)
135 3dxy_A TRNA (guanine-N(7)-)-me 99.3 1.6E-12 5.4E-17 111.6 5.1 99 190-288 34-151 (218)
136 2pjd_A Ribosomal RNA small sub 99.3 1.8E-12 6.3E-17 119.0 5.9 110 179-289 186-305 (343)
137 2h00_A Methyltransferase 10 do 99.3 2.5E-13 8.6E-18 119.4 0.0 145 190-343 65-239 (254)
138 2avn_A Ubiquinone/menaquinone 99.3 3.7E-12 1.3E-16 112.3 7.3 97 190-289 54-154 (260)
139 3fzg_A 16S rRNA methylase; met 99.3 3.1E-12 1.1E-16 105.3 6.0 133 189-345 48-190 (200)
140 2y1w_A Histone-arginine methyl 99.3 3.4E-12 1.2E-16 117.4 6.9 106 180-287 41-155 (348)
141 3opn_A Putative hemolysin; str 99.3 7.5E-12 2.6E-16 108.3 8.7 147 179-342 26-184 (232)
142 2ld4_A Anamorsin; methyltransf 99.3 4.6E-12 1.6E-16 104.8 7.0 109 188-334 10-128 (176)
143 1ej0_A FTSJ; methyltransferase 99.3 1.2E-11 4.3E-16 101.7 9.6 106 180-289 12-138 (180)
144 2yxd_A Probable cobalt-precorr 99.3 1.3E-11 4.3E-16 102.4 9.4 120 180-339 26-154 (183)
145 3duw_A OMT, O-methyltransferas 99.3 1.2E-11 4.3E-16 106.2 9.3 98 188-290 56-170 (223)
146 2pwy_A TRNA (adenine-N(1)-)-me 99.3 1E-11 3.6E-16 109.0 9.0 126 179-341 86-223 (258)
147 3lpm_A Putative methyltransfer 99.3 3.2E-11 1.1E-15 106.2 12.0 124 188-342 46-201 (259)
148 1u2z_A Histone-lysine N-methyl 99.3 2E-11 6.9E-16 114.3 11.2 111 179-293 232-365 (433)
149 1o9g_A RRNA methyltransferase; 99.3 1.3E-11 4.5E-16 108.1 9.3 109 180-289 42-216 (250)
150 3b3j_A Histone-arginine methyl 99.3 1E-11 3.4E-16 118.7 8.8 106 178-285 147-261 (480)
151 2fyt_A Protein arginine N-meth 99.2 1.9E-11 6.6E-16 111.9 9.6 101 180-284 55-168 (340)
152 3kr9_A SAM-dependent methyltra 99.2 4.5E-11 1.5E-15 102.1 11.0 129 189-352 14-156 (225)
153 3ckk_A TRNA (guanine-N(7)-)-me 99.2 1.9E-11 6.4E-16 106.1 8.8 100 189-288 45-169 (235)
154 3p9n_A Possible methyltransfer 99.2 4.3E-11 1.5E-15 100.1 10.7 100 189-290 43-156 (189)
155 3g89_A Ribosomal RNA small sub 99.2 8.6E-12 3E-16 109.2 6.5 121 189-342 79-212 (249)
156 3lec_A NADB-rossmann superfami 99.2 5.4E-11 1.8E-15 101.9 11.2 129 189-352 20-162 (230)
157 2frn_A Hypothetical protein PH 99.2 4.7E-11 1.6E-15 106.3 10.6 120 189-338 124-253 (278)
158 1o54_A SAM-dependent O-methylt 99.2 2.1E-11 7.1E-16 108.5 8.1 102 179-288 102-214 (277)
159 1jsx_A Glucose-inhibited divis 99.2 1.3E-11 4.3E-16 104.8 6.2 92 190-287 65-165 (207)
160 3r3h_A O-methyltransferase, SA 99.2 1.4E-11 4.7E-16 107.4 6.5 99 189-292 59-175 (242)
161 3q7e_A Protein arginine N-meth 99.2 1.8E-11 6.1E-16 112.6 7.5 97 188-285 64-171 (349)
162 3lbf_A Protein-L-isoaspartate 99.2 2.3E-11 7.9E-16 103.5 7.5 99 180-289 68-176 (210)
163 2yxe_A Protein-L-isoaspartate 99.2 2.3E-11 8E-16 103.8 7.5 100 180-288 68-178 (215)
164 2bm8_A Cephalosporin hydroxyla 99.2 5.3E-11 1.8E-15 103.3 9.6 94 190-288 81-188 (236)
165 3gjy_A Spermidine synthase; AP 99.2 2.8E-11 9.6E-16 108.6 7.5 99 191-289 90-202 (317)
166 3r0q_C Probable protein argini 99.2 2.8E-11 9.5E-16 112.4 7.4 101 188-289 61-171 (376)
167 3ntv_A MW1564 protein; rossman 99.2 1.6E-11 5.6E-16 106.3 5.5 98 188-290 69-179 (232)
168 3gnl_A Uncharacterized protein 99.2 1.4E-10 4.7E-15 100.1 10.5 129 189-352 20-162 (244)
169 3u81_A Catechol O-methyltransf 99.2 3E-11 1E-15 103.7 5.9 99 188-289 56-172 (221)
170 2nyu_A Putative ribosomal RNA 99.2 2.1E-10 7E-15 96.3 10.9 105 180-288 12-146 (196)
171 3sso_A Methyltransferase; macr 99.2 3.5E-11 1.2E-15 110.4 6.6 96 189-290 215-327 (419)
172 1p91_A Ribosomal RNA large sub 99.1 4.7E-11 1.6E-15 105.6 7.1 93 189-290 84-181 (269)
173 2gpy_A O-methyltransferase; st 99.1 3E-11 1E-15 104.6 5.7 98 188-290 52-163 (233)
174 3adn_A Spermidine synthase; am 99.1 4.9E-11 1.7E-15 106.7 7.1 100 189-288 82-199 (294)
175 3tr6_A O-methyltransferase; ce 99.1 3.9E-11 1.3E-15 103.2 6.2 98 189-291 63-178 (225)
176 2esr_A Methyltransferase; stru 99.1 3.8E-11 1.3E-15 99.2 5.9 107 180-290 21-141 (177)
177 2vdv_E TRNA (guanine-N(7)-)-me 99.1 4.4E-11 1.5E-15 104.5 6.3 94 189-287 48-173 (246)
178 1jg1_A PIMT;, protein-L-isoasp 99.1 4.9E-11 1.7E-15 103.4 6.5 102 178-289 80-191 (235)
179 2hnk_A SAM-dependent O-methylt 99.1 1.2E-10 4.2E-15 101.1 9.0 98 188-290 58-184 (239)
180 2ozv_A Hypothetical protein AT 99.1 6.7E-11 2.3E-15 104.2 7.3 100 188-287 34-170 (260)
181 3dou_A Ribosomal RNA large sub 99.1 2.7E-10 9.1E-15 95.5 10.5 108 175-288 10-140 (191)
182 1vbf_A 231AA long hypothetical 99.1 6.5E-11 2.2E-15 102.2 7.0 100 179-289 60-167 (231)
183 1dl5_A Protein-L-isoaspartate 99.1 7.5E-11 2.5E-15 107.0 7.5 101 180-289 66-177 (317)
184 3dmg_A Probable ribosomal RNA 99.1 1.4E-10 4.6E-15 107.7 9.1 97 190-288 233-341 (381)
185 1g6q_1 HnRNP arginine N-methyl 99.1 9.1E-11 3.1E-15 106.9 7.8 97 188-285 36-143 (328)
186 2oxt_A Nucleoside-2'-O-methylt 99.1 2.5E-10 8.4E-15 100.6 9.6 107 178-289 63-187 (265)
187 3lcv_B Sisomicin-gentamicin re 99.1 5E-11 1.7E-15 102.6 4.5 136 189-345 131-274 (281)
188 1nv8_A HEMK protein; class I a 99.1 2.8E-10 9.7E-15 101.4 9.2 94 190-285 123-247 (284)
189 2wa2_A Non-structural protein 99.1 2.6E-10 8.9E-15 101.1 8.7 106 178-289 71-195 (276)
190 3c3p_A Methyltransferase; NP_9 99.1 6.6E-11 2.3E-15 100.7 4.7 97 189-290 55-163 (210)
191 2fhp_A Methylase, putative; al 99.1 8.8E-11 3E-15 97.7 4.9 106 181-290 35-157 (187)
192 3dr5_A Putative O-methyltransf 99.1 1.4E-10 4.9E-15 99.5 6.1 95 191-290 57-166 (221)
193 1sui_A Caffeoyl-COA O-methyltr 99.1 1.1E-10 3.7E-15 102.0 5.3 97 189-290 78-193 (247)
194 3bzb_A Uncharacterized protein 99.1 1.1E-09 3.8E-14 97.5 11.8 96 188-286 77-204 (281)
195 3tma_A Methyltransferase; thum 99.0 5.4E-10 1.8E-14 102.9 9.3 110 178-288 192-318 (354)
196 1ixk_A Methyltransferase; open 99.0 4.7E-10 1.6E-14 101.5 8.7 103 188-290 116-249 (315)
197 2ift_A Putative methylase HI07 99.0 1.2E-10 4E-15 98.6 3.9 97 190-290 53-166 (201)
198 1r18_A Protein-L-isoaspartate( 99.0 2.5E-10 8.4E-15 98.4 6.0 93 188-288 82-195 (227)
199 1i9g_A Hypothetical protein RV 99.0 4.3E-10 1.5E-14 100.0 7.8 104 178-289 88-205 (280)
200 2p41_A Type II methyltransfera 99.0 9.1E-10 3.1E-14 99.0 9.8 104 180-287 73-191 (305)
201 2fpo_A Methylase YHHF; structu 99.0 3.1E-10 1.1E-14 96.0 5.9 97 190-290 54-163 (202)
202 1ws6_A Methyltransferase; stru 99.0 1.7E-10 5.9E-15 94.4 3.8 95 190-290 41-150 (171)
203 2yvl_A TRMI protein, hypotheti 99.0 1.2E-09 4.2E-14 95.1 9.3 100 180-289 82-192 (248)
204 2i7c_A Spermidine synthase; tr 99.0 2.1E-10 7.2E-15 102.3 4.5 99 189-287 77-192 (283)
205 2pbf_A Protein-L-isoaspartate 99.0 5.3E-10 1.8E-14 96.2 6.9 94 188-289 78-195 (227)
206 3gdh_A Trimethylguanosine synt 99.0 2.2E-11 7.4E-16 106.0 -2.1 136 190-346 78-223 (241)
207 1iy9_A Spermidine synthase; ro 99.0 2.4E-10 8.1E-15 101.5 4.6 99 189-287 74-189 (275)
208 1uir_A Polyamine aminopropyltr 99.0 2.3E-10 7.9E-15 103.6 4.6 100 189-288 76-196 (314)
209 1xj5_A Spermidine synthase 1; 99.0 2.6E-10 9E-15 103.8 4.9 99 188-286 118-234 (334)
210 2avd_A Catechol-O-methyltransf 99.0 2.3E-10 7.9E-15 98.6 4.2 98 188-290 67-182 (229)
211 2o07_A Spermidine synthase; st 99.0 2.7E-10 9.3E-15 102.5 4.5 100 189-288 94-210 (304)
212 1i1n_A Protein-L-isoaspartate 99.0 1.4E-09 4.9E-14 93.4 8.7 94 188-289 75-184 (226)
213 3frh_A 16S rRNA methylase; met 99.0 1.6E-09 5.5E-14 92.4 8.7 95 189-287 104-206 (253)
214 3c3y_A Pfomt, O-methyltransfer 99.0 3.1E-10 1E-14 98.6 4.4 97 189-290 69-184 (237)
215 2b2c_A Spermidine synthase; be 99.0 3E-10 1E-14 102.6 4.2 99 189-287 107-222 (314)
216 1mjf_A Spermidine synthase; sp 99.0 4E-10 1.4E-14 100.4 4.9 98 189-287 74-193 (281)
217 2b25_A Hypothetical protein; s 99.0 1.1E-09 3.9E-14 100.0 8.0 103 179-289 95-221 (336)
218 3cbg_A O-methyltransferase; cy 99.0 2.3E-10 7.9E-15 99.0 3.2 97 189-290 71-185 (232)
219 2pt6_A Spermidine synthase; tr 99.0 3.5E-10 1.2E-14 102.6 4.5 99 189-287 115-230 (321)
220 4azs_A Methyltransferase WBDD; 98.9 7E-10 2.4E-14 108.5 5.9 102 189-292 65-178 (569)
221 3a27_A TYW2, uncharacterized p 98.9 5.6E-10 1.9E-14 99.0 4.7 97 188-290 117-222 (272)
222 1ne2_A Hypothetical protein TA 98.9 2.2E-09 7.4E-14 90.5 7.8 88 188-277 49-139 (200)
223 1inl_A Spermidine synthase; be 98.9 6.7E-10 2.3E-14 99.6 4.5 99 189-287 89-205 (296)
224 1zq9_A Probable dimethyladenos 98.9 9.9E-10 3.4E-14 98.0 5.5 103 178-284 17-144 (285)
225 2cmg_A Spermidine synthase; tr 98.9 2.8E-09 9.7E-14 93.7 7.8 89 189-287 71-171 (262)
226 4hc4_A Protein arginine N-meth 98.9 2.6E-09 8.7E-14 98.4 7.5 95 190-285 83-187 (376)
227 2xyq_A Putative 2'-O-methyl tr 98.9 4.9E-09 1.7E-13 93.2 8.6 116 188-340 61-195 (290)
228 1wy7_A Hypothetical protein PH 98.8 2.6E-08 8.8E-13 84.2 11.6 88 188-277 47-141 (207)
229 2ih2_A Modification methylase 98.8 1.1E-08 3.8E-13 96.3 10.2 105 180-288 30-165 (421)
230 3b5i_A S-adenosyl-L-methionine 98.8 4.4E-08 1.5E-12 89.9 13.7 150 191-341 53-297 (374)
231 3ajd_A Putative methyltransfer 98.8 2.8E-09 9.5E-14 94.6 5.4 103 188-290 81-214 (274)
232 2yxl_A PH0851 protein, 450AA l 98.8 7E-09 2.4E-13 98.5 8.4 103 188-290 257-392 (450)
233 3tm4_A TRNA (guanine N2-)-meth 98.8 1.4E-08 4.7E-13 94.1 9.8 121 188-342 215-352 (373)
234 1qam_A ERMC' methyltransferase 98.8 6.7E-09 2.3E-13 90.4 7.1 103 178-283 19-142 (244)
235 2f8l_A Hypothetical protein LM 98.8 4.7E-09 1.6E-13 96.2 6.2 100 189-288 129-257 (344)
236 1yub_A Ermam, rRNA methyltrans 98.8 1.9E-09 6.5E-14 94.0 3.0 107 178-287 18-145 (245)
237 3k6r_A Putative transferase PH 98.8 2.1E-08 7.3E-13 88.5 9.0 118 189-336 124-251 (278)
238 2igt_A SAM dependent methyltra 98.7 2.1E-08 7.3E-13 91.2 8.0 96 190-289 153-274 (332)
239 1sqg_A SUN protein, FMU protei 98.7 2.9E-08 9.9E-13 93.7 7.9 103 188-290 244-377 (429)
240 3m6w_A RRNA methylase; rRNA me 98.7 1.5E-08 5.1E-13 95.8 5.7 102 188-290 99-232 (464)
241 2h1r_A Dimethyladenosine trans 98.7 2.1E-08 7.1E-13 90.0 6.0 100 178-281 31-153 (299)
242 2frx_A Hypothetical protein YE 98.7 5.7E-08 2E-12 92.6 9.1 101 190-290 117-249 (479)
243 1m6e_X S-adenosyl-L-methionnin 98.6 4.7E-07 1.6E-11 82.5 13.9 151 189-339 50-277 (359)
244 2efj_A 3,7-dimethylxanthine me 98.6 1.3E-07 4.4E-12 86.9 9.7 150 191-340 53-290 (384)
245 3m4x_A NOL1/NOP2/SUN family pr 98.6 4E-08 1.4E-12 92.7 5.5 103 188-290 103-237 (456)
246 3ftd_A Dimethyladenosine trans 98.5 3.1E-07 1.1E-11 79.9 9.0 91 178-270 20-116 (249)
247 1wxx_A TT1595, hypothetical pr 98.5 4.4E-08 1.5E-12 91.0 3.9 97 190-288 209-326 (382)
248 2okc_A Type I restriction enzy 98.5 6.3E-08 2.2E-12 91.8 4.8 110 178-288 160-308 (445)
249 2as0_A Hypothetical protein PH 98.5 4.6E-08 1.6E-12 91.4 3.6 99 190-289 217-337 (396)
250 3k0b_A Predicted N6-adenine-sp 98.5 1.9E-07 6.6E-12 86.7 7.3 110 178-288 190-351 (393)
251 3gru_A Dimethyladenosine trans 98.5 6.3E-07 2.2E-11 79.8 10.3 79 178-259 39-125 (295)
252 2yx1_A Hypothetical protein MJ 98.5 1E-07 3.5E-12 86.9 5.0 91 189-289 194-293 (336)
253 3evf_A RNA-directed RNA polyme 98.5 5E-07 1.7E-11 78.3 8.9 115 174-290 59-186 (277)
254 3ldg_A Putative uncharacterize 98.5 5.7E-07 1.9E-11 83.2 9.8 110 178-288 183-344 (384)
255 1rjd_A PPM1P, carboxy methyl t 98.5 7.8E-07 2.7E-11 80.7 10.5 141 190-335 97-281 (334)
256 1uwv_A 23S rRNA (uracil-5-)-me 98.4 1.7E-06 5.7E-11 81.7 12.6 97 180-285 277-387 (433)
257 4dmg_A Putative uncharacterize 98.4 2.4E-07 8.1E-12 86.1 6.5 98 190-289 214-328 (393)
258 2b78_A Hypothetical protein SM 98.4 8.7E-08 3E-12 89.1 3.3 99 189-288 211-332 (385)
259 3fut_A Dimethyladenosine trans 98.4 5.4E-07 1.8E-11 79.3 7.6 89 179-272 37-133 (271)
260 3ldu_A Putative methylase; str 98.4 4.9E-07 1.7E-11 83.8 7.6 110 178-288 184-345 (385)
261 3c0k_A UPF0064 protein YCCW; P 98.4 1.4E-07 4.9E-12 88.0 3.7 99 189-288 219-340 (396)
262 2qfm_A Spermine synthase; sper 98.4 1.4E-07 4.9E-12 85.6 3.4 99 189-288 187-315 (364)
263 1qyr_A KSGA, high level kasuga 98.3 5.7E-07 1.9E-11 78.4 5.8 90 178-270 10-111 (252)
264 2jjq_A Uncharacterized RNA met 98.3 1.6E-06 5.5E-11 81.4 9.2 90 189-286 289-386 (425)
265 3v97_A Ribosomal RNA large sub 98.3 4.1E-07 1.4E-11 90.8 5.3 98 190-288 539-658 (703)
266 3uzu_A Ribosomal RNA small sub 98.3 2.4E-07 8.1E-12 82.0 3.0 68 179-247 32-105 (279)
267 3o4f_A Spermidine synthase; am 98.3 8.3E-07 2.8E-11 78.4 5.9 101 188-289 81-200 (294)
268 4gqb_A Protein arginine N-meth 98.3 7.7E-07 2.6E-11 86.8 5.8 125 153-284 324-464 (637)
269 3tqs_A Ribosomal RNA small sub 98.2 8.7E-07 3E-11 77.3 5.2 67 178-247 18-90 (255)
270 3gcz_A Polyprotein; flavivirus 98.2 2.2E-06 7.5E-11 74.4 6.1 113 174-288 75-202 (282)
271 1m6y_A S-adenosyl-methyltransf 98.1 2.2E-06 7.4E-11 76.6 5.2 78 178-256 15-106 (301)
272 3iei_A Leucine carboxyl methyl 98.1 7.5E-05 2.6E-09 67.4 14.1 145 190-342 90-281 (334)
273 3ua3_A Protein arginine N-meth 98.1 6E-06 2E-10 80.6 7.2 125 153-284 379-531 (745)
274 2qy6_A UPF0209 protein YFCK; s 98.0 6.5E-06 2.2E-10 71.8 6.1 96 190-285 60-211 (257)
275 4auk_A Ribosomal RNA large sub 98.0 3.8E-05 1.3E-09 69.7 11.1 96 188-288 209-307 (375)
276 2r6z_A UPF0341 protein in RSP 98.0 9.6E-06 3.3E-10 70.9 6.8 99 188-290 81-219 (258)
277 3v97_A Ribosomal RNA large sub 97.9 1.8E-05 6.3E-10 78.9 8.4 110 178-288 179-348 (703)
278 3bt7_A TRNA (uracil-5-)-methyl 97.9 3.6E-06 1.2E-10 77.7 2.9 88 191-288 214-327 (369)
279 2dul_A N(2),N(2)-dimethylguano 97.9 1.3E-05 4.3E-10 74.1 6.2 92 190-287 47-164 (378)
280 2b9e_A NOL1/NOP2/SUN domain fa 97.9 3.1E-05 1E-09 69.5 8.4 102 188-290 100-237 (309)
281 2ar0_A M.ecoki, type I restric 97.9 1.1E-05 3.9E-10 78.0 5.4 108 180-288 160-313 (541)
282 3eld_A Methyltransferase; flav 97.8 8.9E-05 3.1E-09 64.8 9.4 113 174-288 66-192 (300)
283 3axs_A Probable N(2),N(2)-dime 97.7 1.1E-05 3.8E-10 74.5 2.7 92 190-287 52-158 (392)
284 2px2_A Genome polyprotein [con 97.7 0.00016 5.5E-09 61.8 9.3 113 174-288 58-184 (269)
285 3khk_A Type I restriction-modi 97.6 3.1E-05 1E-09 74.9 4.2 109 178-288 234-396 (544)
286 3s1s_A Restriction endonucleas 97.6 0.0002 7E-09 71.1 9.8 100 189-288 320-466 (878)
287 3p8z_A Mtase, non-structural p 97.6 0.00048 1.7E-08 58.0 10.5 114 175-292 64-190 (267)
288 2k4m_A TR8_protein, UPF0146 pr 97.5 0.00055 1.9E-08 53.4 9.3 86 189-291 34-125 (153)
289 3c6k_A Spermine synthase; sper 97.5 4.6E-05 1.6E-09 69.5 3.4 97 190-287 205-331 (381)
290 2vz8_A Fatty acid synthase; tr 97.5 3.8E-05 1.3E-09 86.5 3.2 141 190-340 1240-1393(2512)
291 3lkz_A Non-structural protein 97.5 0.0008 2.7E-08 58.6 10.4 114 175-291 80-207 (321)
292 3lkd_A Type I restriction-modi 97.4 0.00043 1.5E-08 66.8 9.1 99 190-288 221-359 (542)
293 2oyr_A UPF0341 protein YHIQ; a 97.4 0.00016 5.5E-09 62.9 5.5 77 181-260 78-176 (258)
294 2uyo_A Hypothetical protein ML 97.3 0.0013 4.5E-08 58.8 9.8 143 190-337 102-274 (310)
295 3b73_A PHIH1 repressor-like pr 97.3 0.00016 5.3E-09 54.2 3.1 65 33-109 14-80 (111)
296 2wk1_A NOVP; transferase, O-me 97.3 0.0009 3.1E-08 58.8 8.5 95 189-287 105-244 (282)
297 3ll7_A Putative methyltransfer 97.2 0.00013 4.4E-09 67.6 2.6 64 190-255 93-170 (410)
298 1xmk_A Double-stranded RNA-spe 97.2 0.00025 8.7E-09 49.3 3.2 62 33-104 12-74 (79)
299 3pqk_A Biofilm growth-associat 97.1 0.00059 2E-08 50.2 5.1 63 28-100 19-81 (102)
300 3cvo_A Methyltransferase-like 97.1 0.0018 6E-08 54.0 8.5 87 189-285 29-152 (202)
301 1qbj_A Protein (double-strande 97.1 0.00079 2.7E-08 47.2 5.3 65 32-103 10-74 (81)
302 1y0u_A Arsenical resistance op 97.1 0.00045 1.5E-08 50.3 4.1 62 27-103 26-87 (96)
303 1wg8_A Predicted S-adenosylmet 97.0 0.00074 2.5E-08 58.9 5.7 64 178-244 11-77 (285)
304 2heo_A Z-DNA binding protein 1 97.0 0.00036 1.2E-08 47.1 2.9 55 34-99 12-66 (67)
305 3jth_A Transcription activator 97.0 0.00044 1.5E-08 50.5 3.1 64 27-100 18-81 (98)
306 2zwa_A Leucine carboxyl methyl 96.9 0.0051 1.8E-07 61.4 11.6 146 190-341 107-308 (695)
307 3f6o_A Probable transcriptiona 96.9 0.00042 1.4E-08 52.6 2.6 66 27-102 13-78 (118)
308 1qgp_A Protein (double strande 96.8 0.0014 4.7E-08 45.6 4.1 61 33-100 15-75 (77)
309 1u2w_A CADC repressor, cadmium 96.7 0.00097 3.3E-08 50.9 3.6 66 26-100 36-101 (122)
310 3cuo_A Uncharacterized HTH-typ 96.7 0.00084 2.9E-08 48.9 2.8 65 28-101 20-84 (99)
311 3f6v_A Possible transcriptiona 96.7 0.00072 2.5E-08 53.7 2.6 69 25-103 51-119 (151)
312 2htj_A P fimbrial regulatory p 96.7 0.0017 5.8E-08 45.5 4.2 57 35-99 3-60 (81)
313 1r1u_A CZRA, repressor protein 96.6 0.0017 5.8E-08 48.1 4.1 61 29-99 23-83 (106)
314 1ub9_A Hypothetical protein PH 96.6 0.00094 3.2E-08 48.7 2.3 69 27-103 11-81 (100)
315 2jsc_A Transcriptional regulat 96.5 0.0013 4.4E-08 49.9 3.0 64 27-100 16-79 (118)
316 2oqg_A Possible transcriptiona 96.5 0.0016 5.3E-08 48.8 3.2 62 32-103 21-82 (114)
317 2kko_A Possible transcriptiona 96.5 0.00059 2E-08 50.9 0.8 60 31-100 24-83 (108)
318 2hzt_A Putative HTH-type trans 96.5 0.0028 9.7E-08 47.0 4.4 77 13-106 4-82 (107)
319 3tka_A Ribosomal RNA small sub 96.5 0.0055 1.9E-07 54.7 6.9 66 177-243 45-114 (347)
320 3ech_A MEXR, multidrug resista 96.3 0.0081 2.8E-07 46.7 6.5 89 10-106 10-105 (142)
321 1r1t_A Transcriptional repress 96.3 0.0023 7.9E-08 48.8 3.1 62 29-100 43-104 (122)
322 4a5n_A Uncharacterized HTH-typ 96.3 0.0044 1.5E-07 47.8 4.6 79 11-106 14-94 (131)
323 3r24_A NSP16, 2'-O-methyl tran 96.2 0.011 3.6E-07 51.6 7.0 93 188-287 107-217 (344)
324 1oyi_A Double-stranded RNA-bin 96.2 0.0033 1.1E-07 43.8 3.2 61 32-103 17-77 (82)
325 3mq0_A Transcriptional repress 96.2 0.0033 1.1E-07 55.2 3.8 58 34-102 32-89 (275)
326 4fzv_A Putative methyltransfer 96.1 0.0054 1.9E-07 55.8 5.3 105 188-292 146-289 (359)
327 3df8_A Possible HXLR family tr 96.1 0.0027 9.3E-08 47.5 2.8 75 12-106 16-93 (111)
328 2jt1_A PEFI protein; solution 96.0 0.0037 1.2E-07 43.3 2.7 35 48-86 23-57 (77)
329 2y75_A HTH-type transcriptiona 96.0 0.011 3.7E-07 45.4 5.6 46 48-100 25-70 (129)
330 3kp7_A Transcriptional regulat 96.0 0.017 5.9E-07 45.3 6.9 64 34-106 40-107 (151)
331 1xn7_A Hypothetical protein YH 95.9 0.0069 2.4E-07 42.0 3.7 43 37-86 7-49 (78)
332 1z7u_A Hypothetical protein EF 95.9 0.0046 1.6E-07 46.2 3.0 78 12-106 11-90 (112)
333 1r7j_A Conserved hypothetical 95.9 0.0044 1.5E-07 44.9 2.7 48 50-107 21-68 (95)
334 2zkz_A Transcriptional repress 95.8 0.0037 1.3E-07 45.7 2.2 64 28-101 23-86 (99)
335 2k02_A Ferrous iron transport 95.8 0.0066 2.2E-07 42.9 3.2 43 37-86 7-49 (87)
336 2f2e_A PA1607; transcription f 95.8 0.0071 2.4E-07 47.6 3.7 75 14-106 15-90 (146)
337 1i4w_A Mitochondrial replicati 95.7 0.013 4.5E-07 53.1 5.8 66 178-244 41-116 (353)
338 2fsw_A PG_0823 protein; alpha- 95.6 0.0069 2.4E-07 44.8 3.1 79 11-106 13-93 (107)
339 3ufb_A Type I restriction-modi 95.6 0.047 1.6E-06 52.4 9.6 110 178-288 206-363 (530)
340 1yyv_A Putative transcriptiona 95.6 0.0072 2.5E-07 46.6 3.2 78 12-106 24-103 (131)
341 2xrn_A HTH-type transcriptiona 95.6 0.0073 2.5E-07 51.9 3.5 59 35-103 9-67 (241)
342 1tbx_A ORF F-93, hypothetical 95.6 0.0047 1.6E-07 44.9 2.0 64 34-106 10-77 (99)
343 1mkm_A ICLR transcriptional re 95.5 0.01 3.6E-07 51.1 4.3 57 35-102 11-67 (249)
344 2fu4_A Ferric uptake regulatio 95.5 0.0073 2.5E-07 42.3 2.7 50 33-87 18-72 (83)
345 3t8r_A Staphylococcus aureus C 95.4 0.02 6.9E-07 44.8 5.2 46 48-100 27-72 (143)
346 3k0l_A Repressor protein; heli 95.4 0.037 1.3E-06 43.9 6.9 67 33-106 47-114 (162)
347 3bdd_A Regulatory protein MARR 95.4 0.027 9.4E-07 43.4 6.0 66 33-106 32-99 (142)
348 1on2_A Transcriptional regulat 95.4 0.0097 3.3E-07 46.4 3.2 50 48-106 21-70 (142)
349 3r4k_A Transcriptional regulat 95.3 0.0053 1.8E-07 53.4 1.6 58 35-102 9-66 (260)
350 1jgs_A Multiple antibiotic res 95.3 0.025 8.5E-07 43.5 5.3 67 33-106 35-102 (138)
351 3bja_A Transcriptional regulat 95.3 0.014 4.9E-07 44.8 3.9 66 33-106 34-101 (139)
352 3lwf_A LIN1550 protein, putati 95.2 0.028 9.7E-07 44.8 5.5 45 48-99 43-87 (159)
353 2hr3_A Probable transcriptiona 95.2 0.014 4.9E-07 45.4 3.7 67 32-106 35-104 (147)
354 2g7u_A Transcriptional regulat 95.2 0.0082 2.8E-07 52.1 2.5 60 35-106 17-76 (257)
355 2qww_A Transcriptional regulat 95.1 0.041 1.4E-06 43.2 6.1 66 33-106 42-111 (154)
356 3g3z_A NMB1585, transcriptiona 95.0 0.012 4.3E-07 45.7 3.0 67 33-106 32-99 (145)
357 2pg4_A Uncharacterized protein 95.0 0.0066 2.3E-07 43.8 1.2 63 37-106 20-83 (95)
358 2ia2_A Putative transcriptiona 95.0 0.009 3.1E-07 52.1 2.1 58 35-104 24-81 (265)
359 1sfx_A Conserved hypothetical 95.0 0.012 4E-07 43.2 2.4 48 32-86 20-67 (109)
360 2zig_A TTHA0409, putative modi 94.9 0.023 8E-07 50.3 4.8 50 178-231 225-275 (297)
361 2o0y_A Transcriptional regulat 94.9 0.012 4.1E-07 51.1 2.8 57 35-102 26-82 (260)
362 2lkp_A Transcriptional regulat 94.9 0.015 5.2E-07 43.7 3.0 50 29-86 29-78 (119)
363 3oop_A LIN2960 protein; protei 94.9 0.01 3.5E-07 46.1 2.0 67 32-106 37-105 (143)
364 3nrv_A Putative transcriptiona 94.9 0.012 4.1E-07 46.0 2.4 67 32-106 40-108 (148)
365 3k69_A Putative transcription 94.9 0.041 1.4E-06 44.0 5.6 47 48-101 27-73 (162)
366 2wte_A CSA3; antiviral protein 94.8 0.016 5.5E-07 49.7 3.2 63 33-106 153-215 (244)
367 3e6m_A MARR family transcripti 94.8 0.039 1.3E-06 43.7 5.4 66 33-106 54-121 (161)
368 2nnn_A Probable transcriptiona 94.8 0.012 4E-07 45.5 2.1 67 33-106 39-106 (140)
369 2gxg_A 146AA long hypothetical 94.8 0.019 6.6E-07 44.5 3.4 66 33-106 38-104 (146)
370 2bv6_A MGRA, HTH-type transcri 94.7 0.021 7.1E-07 44.2 3.4 67 33-106 38-105 (142)
371 2rdp_A Putative transcriptiona 94.7 0.06 2.1E-06 41.9 6.2 66 33-106 43-110 (150)
372 2eth_A Transcriptional regulat 94.7 0.022 7.4E-07 44.9 3.4 67 32-106 44-112 (154)
373 3s2w_A Transcriptional regulat 94.6 0.05 1.7E-06 43.0 5.6 64 35-106 53-118 (159)
374 3cdh_A Transcriptional regulat 94.6 0.017 5.7E-07 45.5 2.7 66 33-106 44-111 (155)
375 3vyw_A MNMC2; tRNA wobble urid 94.6 0.16 5.5E-06 44.8 9.1 121 190-343 96-249 (308)
376 3hsr_A HTH-type transcriptiona 94.6 0.0095 3.2E-07 46.2 1.1 66 33-106 37-104 (140)
377 2fbh_A Transcriptional regulat 94.5 0.021 7.1E-07 44.3 3.1 66 33-105 38-105 (146)
378 3r0a_A Putative transcriptiona 94.5 0.02 6.7E-07 43.6 2.7 48 33-86 27-75 (123)
379 2nyx_A Probable transcriptiona 94.5 0.063 2.1E-06 42.9 5.9 67 33-106 46-113 (168)
380 2p4w_A Transcriptional regulat 94.5 0.032 1.1E-06 46.4 4.1 69 27-103 10-81 (202)
381 3bro_A Transcriptional regulat 94.4 0.028 9.5E-07 43.3 3.5 69 33-106 35-104 (141)
382 3bj6_A Transcriptional regulat 94.4 0.02 6.8E-07 44.9 2.6 67 33-106 41-108 (152)
383 2lnb_A Z-DNA-binding protein 1 94.3 0.029 1E-06 38.0 2.8 56 33-99 20-75 (80)
384 3cjn_A Transcriptional regulat 94.3 0.018 6.3E-07 45.7 2.3 66 33-106 53-120 (162)
385 1z91_A Organic hydroperoxide r 94.3 0.021 7.3E-07 44.4 2.6 68 33-108 41-110 (147)
386 2qvo_A Uncharacterized protein 94.3 0.015 5.1E-07 41.9 1.5 52 49-106 30-81 (95)
387 3bpv_A Transcriptional regulat 94.3 0.022 7.4E-07 43.8 2.5 67 33-106 30-97 (138)
388 3fm5_A Transcriptional regulat 94.3 0.018 6.2E-07 45.1 2.1 69 32-106 39-108 (150)
389 4hbl_A Transcriptional regulat 94.2 0.014 4.6E-07 45.9 1.4 67 32-106 41-109 (149)
390 2fa5_A Transcriptional regulat 94.2 0.021 7.2E-07 45.3 2.4 66 33-106 50-117 (162)
391 2x4h_A Hypothetical protein SS 94.2 0.025 8.5E-07 43.7 2.7 48 48-105 30-77 (139)
392 3eco_A MEPR; mutlidrug efflux 94.2 0.02 6.7E-07 44.2 2.1 68 33-106 32-101 (139)
393 2pex_A Transcriptional regulat 94.2 0.023 7.7E-07 44.7 2.5 68 33-108 48-117 (153)
394 3jw4_A Transcriptional regulat 94.1 0.022 7.6E-07 44.5 2.4 68 33-106 42-111 (148)
395 3tgn_A ADC operon repressor AD 94.1 0.026 8.9E-07 43.8 2.8 66 32-106 38-105 (146)
396 1lj9_A Transcriptional regulat 94.1 0.022 7.7E-07 44.1 2.4 67 33-106 30-97 (144)
397 1ylf_A RRF2 family protein; st 94.1 0.052 1.8E-06 42.7 4.5 62 25-101 13-74 (149)
398 3u1d_A Uncharacterized protein 94.1 0.042 1.4E-06 43.1 3.8 70 33-107 30-106 (151)
399 2a61_A Transcriptional regulat 94.1 0.017 6E-07 44.8 1.7 67 33-106 34-101 (145)
400 2obp_A Putative DNA-binding pr 94.1 0.029 1E-06 40.4 2.7 53 48-106 35-88 (96)
401 1s3j_A YUSO protein; structura 94.1 0.095 3.3E-06 41.0 6.1 66 34-106 39-105 (155)
402 2fbi_A Probable transcriptiona 94.1 0.016 5.3E-07 44.8 1.3 67 33-106 37-104 (142)
403 2frh_A SARA, staphylococcal ac 93.9 0.02 6.7E-07 43.7 1.6 68 33-106 38-107 (127)
404 3deu_A Transcriptional regulat 93.8 0.026 8.9E-07 45.2 2.3 67 33-106 54-122 (166)
405 2qlz_A Transcription factor PF 93.8 0.017 5.7E-07 49.1 1.1 72 26-105 6-81 (232)
406 3boq_A Transcriptional regulat 93.8 0.031 1.1E-06 44.2 2.6 66 33-106 48-116 (160)
407 2h09_A Transcriptional regulat 93.7 0.058 2E-06 42.5 4.1 57 38-106 46-102 (155)
408 4aik_A Transcriptional regulat 93.6 0.054 1.8E-06 42.6 3.8 66 33-106 32-100 (151)
409 4g6q_A Putative uncharacterize 93.6 0.03 1E-06 45.7 2.3 71 26-104 17-91 (182)
410 1bja_A Transcription regulator 93.6 0.047 1.6E-06 39.1 3.0 62 33-107 17-79 (95)
411 1q1h_A TFE, transcription fact 93.5 0.058 2E-06 39.8 3.6 48 33-86 19-66 (110)
412 2esh_A Conserved hypothetical 93.1 0.12 4.2E-06 38.7 4.9 71 28-106 9-90 (118)
413 3f3x_A Transcriptional regulat 93.1 0.13 4.4E-06 39.7 5.2 64 33-106 38-104 (144)
414 3nqo_A MARR-family transcripti 93.1 0.045 1.5E-06 44.9 2.6 72 31-107 40-112 (189)
415 1p6r_A Penicillinase repressor 92.9 0.039 1.3E-06 38.4 1.7 51 33-86 10-60 (82)
416 4esf_A PADR-like transcription 92.8 0.19 6.6E-06 37.6 5.6 71 28-106 7-86 (117)
417 3hrs_A Metalloregulator SCAR; 92.8 0.053 1.8E-06 45.5 2.7 50 48-106 19-68 (214)
418 2fxa_A Protease production reg 92.7 0.041 1.4E-06 45.9 1.9 66 33-106 49-116 (207)
419 1okr_A MECI, methicillin resis 92.7 0.026 8.9E-07 42.6 0.5 46 34-86 12-61 (123)
420 2w25_A Probable transcriptiona 92.6 0.079 2.7E-06 41.5 3.4 47 33-86 8-54 (150)
421 3f8b_A Transcriptional regulat 92.5 0.24 8.2E-06 37.0 5.8 72 27-106 7-89 (116)
422 2cfx_A HTH-type transcriptiona 92.5 0.085 2.9E-06 41.1 3.4 46 34-86 7-52 (144)
423 1uly_A Hypothetical protein PH 92.4 0.1 3.5E-06 42.9 3.9 52 27-86 15-66 (192)
424 3u2r_A Regulatory protein MARR 92.4 0.058 2E-06 43.1 2.3 67 33-106 47-116 (168)
425 2pn6_A ST1022, 150AA long hypo 92.4 0.07 2.4E-06 41.8 2.7 47 33-86 4-50 (150)
426 1xd7_A YWNA; structural genomi 92.3 0.17 5.7E-06 39.5 4.9 43 51-101 25-67 (145)
427 2fe3_A Peroxide operon regulat 92.2 0.15 5.3E-06 39.7 4.6 62 31-99 21-87 (145)
428 2p5v_A Transcriptional regulat 92.1 0.098 3.3E-06 41.6 3.4 47 33-86 11-57 (162)
429 2k4b_A Transcriptional regulat 92.0 0.073 2.5E-06 38.6 2.2 51 33-86 36-86 (99)
430 2o03_A Probable zinc uptake re 91.9 0.16 5.4E-06 38.9 4.1 62 30-98 9-75 (131)
431 1ku9_A Hypothetical protein MJ 91.8 0.12 4.2E-06 39.9 3.6 47 34-86 28-74 (152)
432 2dbb_A Putative HTH-type trans 91.8 0.12 4.1E-06 40.5 3.4 47 33-86 10-56 (151)
433 2fbk_A Transcriptional regulat 91.7 0.057 2E-06 43.8 1.6 69 33-106 70-140 (181)
434 4fx0_A Probable transcriptiona 91.6 0.054 1.9E-06 42.4 1.3 49 34-86 35-85 (148)
435 2cg4_A Regulatory protein ASNC 91.6 0.11 3.7E-06 40.8 3.0 47 33-86 9-55 (152)
436 2cyy_A Putative HTH-type trans 91.5 0.093 3.2E-06 41.2 2.6 47 33-86 8-54 (151)
437 2ia0_A Putative HTH-type trans 91.2 0.14 4.8E-06 41.2 3.4 47 33-86 18-64 (171)
438 2d1h_A ST1889, 109AA long hypo 91.2 0.12 4.1E-06 37.6 2.7 35 48-86 35-69 (109)
439 3i4p_A Transcriptional regulat 91.2 0.11 3.8E-06 41.3 2.7 47 33-86 4-50 (162)
440 2e1c_A Putative HTH-type trans 91.1 0.12 4.2E-06 41.6 2.9 48 32-86 27-74 (171)
441 1i1g_A Transcriptional regulat 91.1 0.11 3.8E-06 40.1 2.5 46 34-86 6-51 (141)
442 1xma_A Predicted transcription 90.9 0.17 5.9E-06 39.4 3.5 70 29-106 38-118 (145)
443 4b8x_A SCO5413, possible MARR- 90.9 0.057 2E-06 42.2 0.7 65 35-106 38-105 (147)
444 3hhh_A Transcriptional regulat 90.5 0.28 9.6E-06 36.6 4.2 72 27-106 8-88 (116)
445 3l7w_A Putative uncharacterize 90.4 0.19 6.5E-06 37.0 3.2 68 31-106 8-81 (108)
446 1zkd_A DUF185; NESG, RPR58, st 90.3 1.5 5.1E-05 40.0 9.6 62 160-226 55-123 (387)
447 3elk_A Putative transcriptiona 90.1 0.16 5.5E-06 38.1 2.6 73 27-107 9-90 (117)
448 3ggo_A Prephenate dehydrogenas 90.1 1.5 5.2E-05 38.8 9.4 90 191-285 33-126 (314)
449 3i71_A Ethanolamine utilizatio 90.0 0.51 1.8E-05 29.8 4.3 43 48-100 17-59 (68)
450 2oo3_A Protein involved in cat 89.8 0.65 2.2E-05 40.4 6.5 97 191-291 92-202 (283)
451 1v4r_A Transcriptional repress 89.6 0.37 1.3E-05 34.9 4.2 52 28-86 15-68 (102)
452 3k2z_A LEXA repressor; winged 89.5 0.23 7.7E-06 40.9 3.3 35 48-86 23-57 (196)
453 1sfu_A 34L protein; protein/Z- 89.3 0.65 2.2E-05 31.4 4.8 51 39-99 22-72 (75)
454 2vn2_A DNAD, chromosome replic 89.3 0.23 7.9E-06 37.8 3.0 34 49-86 51-84 (128)
455 2dk5_A DNA-directed RNA polyme 89.3 0.24 8E-06 35.3 2.8 48 34-86 22-69 (91)
456 1g60_A Adenine-specific methyl 89.1 0.43 1.5E-05 41.1 4.9 49 178-230 202-251 (260)
457 3mwm_A ZUR, putative metal upt 89.0 0.33 1.1E-05 37.5 3.7 66 31-99 13-79 (139)
458 2xig_A Ferric uptake regulatio 88.9 0.38 1.3E-05 37.7 4.0 62 31-99 26-92 (150)
459 1j5y_A Transcriptional regulat 88.6 0.31 1E-05 39.8 3.5 58 32-101 21-79 (187)
460 3tos_A CALS11; methyltransfera 88.6 1.4 4.9E-05 37.7 7.8 93 191-287 70-217 (257)
461 1p4x_A Staphylococcal accessor 88.3 0.22 7.4E-06 42.8 2.4 50 33-87 159-208 (250)
462 2xvc_A ESCRT-III, SSO0910; cel 87.1 0.36 1.2E-05 30.5 2.2 47 34-86 12-58 (59)
463 2hoe_A N-acetylglucosamine kin 87.0 0.39 1.3E-05 43.9 3.5 72 24-103 12-87 (380)
464 4esb_A Transcriptional regulat 86.9 0.38 1.3E-05 35.8 2.8 66 33-106 10-84 (115)
465 2vxz_A Pyrsv_GP04; viral prote 86.8 0.35 1.2E-05 37.2 2.5 55 34-98 13-67 (165)
466 3fwz_A Inner membrane protein 86.7 4 0.00014 31.0 8.8 88 191-285 7-103 (140)
467 3cta_A Riboflavin kinase; stru 86.6 0.26 9E-06 41.6 1.9 52 49-106 27-78 (230)
468 1fx7_A Iron-dependent represso 86.4 0.31 1.1E-05 41.2 2.3 47 51-106 26-72 (230)
469 2b0l_A GTP-sensing transcripti 86.3 0.36 1.2E-05 35.1 2.3 46 34-86 30-76 (102)
470 1mzb_A Ferric uptake regulatio 86.1 0.68 2.3E-05 35.5 3.9 63 31-99 17-84 (136)
471 2g9w_A Conserved hypothetical 85.6 0.4 1.4E-05 36.8 2.4 52 33-86 10-61 (138)
472 1hsj_A Fusion protein consisti 85.3 0.36 1.2E-05 45.6 2.4 50 33-87 405-454 (487)
473 1sd4_A Penicillinase repressor 85.3 0.34 1.2E-05 36.4 1.8 51 33-86 11-61 (126)
474 1yg2_A Gene activator APHA; vi 85.1 0.64 2.2E-05 37.5 3.5 64 33-104 3-77 (179)
475 2o0m_A Transcriptional regulat 84.8 0.18 6.1E-06 45.6 0.0 63 33-108 21-83 (345)
476 2p8t_A Hypothetical protein PH 84.7 0.42 1.5E-05 39.2 2.2 48 49-106 30-77 (200)
477 3g7u_A Cytosine-specific methy 84.3 3.7 0.00013 37.3 8.5 95 192-290 3-121 (376)
478 2py6_A Methyltransferase FKBM; 84.1 1.4 5E-05 40.5 5.8 39 189-227 225-266 (409)
479 3b1f_A Putative prephenate deh 83.7 5.4 0.00019 34.4 9.2 88 192-284 7-98 (290)
480 2v79_A DNA replication protein 82.9 0.67 2.3E-05 35.6 2.5 34 49-86 51-84 (135)
481 2pjp_A Selenocysteine-specific 82.9 0.74 2.5E-05 34.5 2.7 46 33-86 8-53 (121)
482 2qq9_A Diphtheria toxin repres 82.5 0.73 2.5E-05 38.7 2.9 48 50-106 25-72 (226)
483 1jhg_A Trp operon repressor; c 82.4 1 3.5E-05 32.6 3.1 40 31-78 44-83 (101)
484 2g1u_A Hypothetical protein TM 82.4 15 0.00051 28.2 12.4 91 189-285 17-116 (155)
485 1z6r_A MLC protein; transcript 82.3 1.2 4.1E-05 40.9 4.5 51 29-86 13-63 (406)
486 2qlz_A Transcription factor PF 82.1 1.8 6.3E-05 36.5 5.2 45 34-86 167-211 (232)
487 1z05_A Transcriptional regulat 81.8 1.4 4.7E-05 40.9 4.7 51 29-86 36-86 (429)
488 2ek5_A Predicted transcription 80.6 1.9 6.4E-05 32.7 4.3 35 48-86 26-61 (129)
489 3tqn_A Transcriptional regulat 80.5 1.2 4.1E-05 32.8 3.2 35 48-86 31-66 (113)
490 3ri2_A Transcriptional regulat 80.3 3.8 0.00013 30.7 5.9 73 25-106 14-93 (123)
491 1bia_A BIRA bifunctional prote 79.6 1.3 4.6E-05 39.3 3.7 56 34-100 7-62 (321)
492 1lss_A TRK system potassium up 79.6 14 0.00046 27.4 9.2 88 191-285 4-100 (140)
493 2zfw_A PEX; five alpha-helices 79.5 1.8 6E-05 33.8 3.9 62 37-106 49-121 (148)
494 3eyi_A Z-DNA-binding protein 1 79.5 1.8 6.1E-05 28.5 3.2 47 34-86 12-58 (72)
495 1pl8_A Human sorbitol dehydrog 78.9 5.6 0.00019 35.6 7.7 93 188-288 169-274 (356)
496 2g5c_A Prephenate dehydrogenas 78.8 9.9 0.00034 32.5 9.1 88 193-285 3-94 (281)
497 3eyy_A Putative iron uptake re 78.2 1.2 4E-05 34.6 2.5 65 31-99 18-83 (145)
498 3rkx_A Biotin-[acetyl-COA-carb 78.2 1.8 6E-05 38.6 4.0 59 34-101 5-63 (323)
499 3mag_A VP39; methylated adenin 78.1 2 6.7E-05 37.3 4.0 33 190-222 60-96 (307)
500 3c85_A Putative glutathione-re 77.5 15 0.00052 28.9 9.3 90 191-286 39-138 (183)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=8.2e-57 Score=417.06 Aligned_cols=331 Identities=24% Similarity=0.389 Sum_probs=296.7
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
++++++.|++++.||+.+++|++|+++||||.|.+++ +|.|++|||+++|+ +++.++|||++|++.|++++..+
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEecc
Confidence 4588999999999999999999999999999999853 69999999999999 99999999999999999987633
Q ss_pred CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccC---CChhhhcccCchHHHH
Q 018576 89 GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHG---MHAFEYGRVDPRFNKH 165 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~~ 165 (353)
++ .++|++|+.++.++.+.++.++++++.+. .+..+..|.+|.+++++|++++...+| .++|+++.++++....
T Consensus 79 ~~--~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 155 (353)
T 4a6d_A 79 GG--KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQ 155 (353)
T ss_dssp TT--EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHH
T ss_pred Cc--cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHH
Confidence 32 57899999999888777777899888875 467788999999999999999888887 3578888999999999
Q ss_pred HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC------CCCeeEEe
Q 018576 166 FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL------HPHIEHVA 239 (353)
Q Consensus 166 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~rv~~~~ 239 (353)
|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.
T Consensus 156 f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~ 234 (353)
T 4a6d_A 156 FMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQE 234 (353)
T ss_dssp HHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeec
Confidence 999999988888888999888 88889999999999999999999999999999999999887754 27899999
Q ss_pred CCCCC-CCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 240 GDMFQ-SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 240 ~d~~~-~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
+|+++ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+++|+|.+.+++...+ .....+++.|+.++ +|+
T Consensus 235 gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ 310 (353)
T 4a6d_A 235 GDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQ 310 (353)
T ss_dssp SCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCC
T ss_pred CccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCc
Confidence 99998 56667999999999999999999999999999999999999999987654332 23456788888876 999
Q ss_pred ccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+||.+||+++|++|||+.+++.+.+...++|+++|
T Consensus 311 ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 311 ERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999999999999999999987
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=3.4e-55 Score=407.83 Aligned_cols=348 Identities=50% Similarity=0.933 Sum_probs=304.1
Q ss_pred CCccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCC-CCCCCcCcHHHHHHHHhcccce
Q 018576 5 VDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPT-KNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~r~L~~L~~~g~l 83 (353)
...++.+++..+++++.+++.+++|++|+++|||+.|.+.| ++|+|++|||+++|+ +++..+..++||||+|++.|+|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l 91 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVV 91 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCE
Confidence 55678899999999999999999999999999999999842 249999999999995 3111223999999999999999
Q ss_pred eeecc---CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCc
Q 018576 84 ECSLD---GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 84 ~~~~~---~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~ 160 (353)
++..+ +|..+++|.+|+.++.|+.+.++.++++++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.+++
T Consensus 92 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~ 171 (364)
T 3p9c_A 92 TCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDP 171 (364)
T ss_dssp EEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCH
T ss_pred EEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCH
Confidence 98621 111147899999999988877777899998877778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeC
Q 018576 161 RFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240 (353)
Q Consensus 161 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~ 240 (353)
+..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.+
T Consensus 172 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 251 (364)
T 3p9c_A 172 RFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGG 251 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeC
Confidence 99999999999988888888888887677789999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 241 d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|+|.+.++.............+++.|+....+|+.|
T Consensus 252 D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 331 (364)
T 3p9c_A 252 DMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRER 331 (364)
T ss_dssp CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred CcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccC
Confidence 99988887799999999999999999999999999999999999999988765433222223345677777544489999
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++|+++||+.+++.+..+..++||++|
T Consensus 332 t~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 332 YEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp BHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 999999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=6.8e-55 Score=406.55 Aligned_cols=349 Identities=52% Similarity=0.892 Sum_probs=303.5
Q ss_pred CCccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhc-CCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 5 VDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKA-GPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
.+.++.+.+..+++++.+++.+++|++|+++|||+.|.+. ||++|.|++|||+++|..++.++..++||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 3447889999999999999999999999999999999985 544689999999999832222234999999999999999
Q ss_pred eeec---cCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCc
Q 018576 84 ECSL---DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 84 ~~~~---~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~ 160 (353)
++.. ++|..+++|++|+.++.++.+.++.++++++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.+++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~ 173 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDH 173 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCH
Confidence 9852 1111137899999999998887777999998887778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeC
Q 018576 161 RFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240 (353)
Q Consensus 161 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~ 240 (353)
+..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.+
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 253 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGG 253 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEec
Confidence 99999999999988887888888887577789999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 241 d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++.|+....+++.+
T Consensus 254 d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~r 333 (368)
T 3reo_A 254 DMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKER 333 (368)
T ss_dssp CTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCC
T ss_pred CCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccC
Confidence 99988887799999999999999999999999999999999999999988765433222233446777777654489999
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++|+++||+.+++.+..++.++||++|
T Consensus 334 t~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 334 TEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 999999999999999999999999999999987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1e-49 Score=369.34 Aligned_cols=323 Identities=25% Similarity=0.352 Sum_probs=286.2
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
.+....+++++.+++.+++|++|+++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 20 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~--- 88 (348)
T 3lst_A 20 LQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES--- 88 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec---
Confidence 4567789999999999999999999999999987 49999999999999 999999999999999999984
Q ss_pred CCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHH
Q 018576 90 SGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTA 169 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (353)
+++|++|+.++.+..+. +.++.+++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.++++....|+++
T Consensus 89 ---~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 164 (348)
T 3lst_A 89 ---DGRFALTDKGAALRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEG 164 (348)
T ss_dssp ---TTEEEECTTTGGGSTTS-SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHH
T ss_pred ---CCEEecCHHHHHHhcCC-CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHH
Confidence 68899999999885544 45788888876677788999999999999999999999988999999999999999999
Q ss_pred HHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-----CCCeeEEeCCCCC
Q 018576 170 MYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-----HPHIEHVAGDMFQ 244 (353)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d~~~ 244 (353)
|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .++|+++.+|+++
T Consensus 165 m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 243 (348)
T 3lst_A 165 METVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR 243 (348)
T ss_dssp HHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT
T ss_pred HHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCC
Confidence 99988888888999888 88889999999999999999999999999999999887763321 2579999999988
Q ss_pred CCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 245 SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 245 ~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
++|..|+|++.++||+|+++++.++|++++++|||||+|+|.|...++.... ......++.|+... +++.+|.++
T Consensus 244 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~-~~~~~t~~e 318 (348)
T 3lst_A 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAAR-TGQERTAAE 318 (348)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHTT-SCCCCBHHH
T ss_pred CCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhcC-CCcCCCHHH
Confidence 7774499999999999999999999999999999999999999987765322 22345677777654 899999999
Q ss_pred HHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 325 FMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++||+.+++.+..+..++|+++|
T Consensus 319 ~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 319 LEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 99999999999999999888899999875
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=8e-50 Score=372.72 Aligned_cols=327 Identities=24% Similarity=0.463 Sum_probs=290.5
Q ss_pred CccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 6 DGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
+..+.....+|++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~ 103 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDD 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEE
Confidence 33455678889999999999999999999999999986 59999999999999 99999999999999999998
Q ss_pred eccCCCCccc-eecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHH
Q 018576 86 SLDGSGARRR-YSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNK 164 (353)
Q Consensus 86 ~~~~g~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~ 164 (353)
. ++++ |.+|+.++.+..+ ++.++.+++.+...+..++.|.+|.++++++.++++..+|.++|+|+.++++...
T Consensus 104 ~-----~~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~ 177 (369)
T 3gwz_A 104 L-----GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARE 177 (369)
T ss_dssp C-----SSTTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHH
T ss_pred e-----CCCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHH
Confidence 5 2577 9999999987544 4457888888776666889999999999999999999999889999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeE
Q 018576 165 HFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEH 237 (353)
Q Consensus 165 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~ 237 (353)
.|+++|...+......+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++|++
T Consensus 178 ~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~ 256 (369)
T 3gwz_A 178 LFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEI 256 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEE
Confidence 9999999988888888888888 88889999999999999999999999999999999888887764 368999
Q ss_pred EeCCCCCCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 238 VAGDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 238 ~~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
+.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++.... . ...+++.|+... +
T Consensus 257 ~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~ 330 (369)
T 3gwz_A 257 LPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-G 330 (369)
T ss_dssp EECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-S
T ss_pred eccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-C
Confidence 999999877755 99999999999999999999999999999999999999988764321 1 346677777664 8
Q ss_pred CcccCHHHHHHHHHhcCCceeeEee-eCCceEEEEEeC
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDL-VTGNFWVMEFYK 353 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~~ 353 (353)
++.+|.++|+++|+++||+++++.+ ..+..++||++|
T Consensus 331 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 331 GAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 9999999999999999999999999 678899999875
No 6
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=1.7e-49 Score=365.75 Aligned_cols=316 Identities=24% Similarity=0.340 Sum_probs=278.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCc
Q 018576 14 AYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGAR 93 (353)
Q Consensus 14 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~ 93 (353)
..+++++.+++.+++|++|+++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++. ++
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~-----~~ 73 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD-----GQ 73 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----TT
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec-----CC
Confidence 357899999999999999999999999987 59999999999999 999999999999999999986 26
Q ss_pred cceecccccccccCCCCCCChHHHHHHhcChhHH-HhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHh
Q 018576 94 RRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL-ESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYN 172 (353)
Q Consensus 94 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 172 (353)
++|.+|+.++.+..+ ++.++.+++.+...+..+ ..|.+|.+++++++++++..+|.++|+|+.++++....|++.|..
T Consensus 74 ~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 152 (332)
T 3i53_A 74 GVYGLTEFGEQLRDD-HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSH 152 (332)
T ss_dssp SBEEECTTGGGGSTT-CTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHH
T ss_pred CeEEcCHhHHHHhcC-CchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHH
Confidence 889999999998654 445788888765444556 889999999999999998889988999999999999999999998
Q ss_pred chhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCCC
Q 018576 173 HTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQS 245 (353)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~ 245 (353)
.+....+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++|+++.+|++++
T Consensus 153 ~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 231 (332)
T 3i53_A 153 HLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231 (332)
T ss_dssp HHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred hHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC
Confidence 87776667777777 77789999999999999999999999999999999888887764 27899999999987
Q ss_pred CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 246 VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 246 ~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
+|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++. .+ ...+++.|+... +++.+|.++
T Consensus 232 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~~e 303 (332)
T 3i53_A 232 LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSLAE 303 (332)
T ss_dssp CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCHHH
T ss_pred CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCHHH
Confidence 7755 99999999999999989999999999999999999999987664 11 235677776654 899999999
Q ss_pred HHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 325 FMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++||+.+++.+.++ .++||++|
T Consensus 304 ~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 304 LGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 99999999999999999988 99999875
No 7
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=4e-48 Score=361.83 Aligned_cols=343 Identities=44% Similarity=0.728 Sum_probs=274.6
Q ss_pred hHHHHHHH--HHHhhhHHHHHHHHHHHhChhhhhhhcC-CCCCCCHHHHHHhCCCC--CCCCcCcHHHHHHHHhccccee
Q 018576 10 DQSFAYAN--QLAMGTVLPMAMQAVYELGIFQIIDKAG-PGAKLSASDIAAQLPTK--NKDAPTMLDRILRLLASYSVVE 84 (353)
Q Consensus 10 ~~~~~~l~--~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~~~t~~ela~~~~~~--~~~~~~~l~r~L~~L~~~g~l~ 84 (353)
.++...|. +++.+++.+++|++|+++|||+.|.+.| |+++.|++|||+++|++ +|.+++.++||||+|++.|+|+
T Consensus 20 ~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~ 99 (372)
T 1fp1_D 20 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLT 99 (372)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceE
Confidence 34555666 9999999999999999999999999742 11229999999999982 3336789999999999999999
Q ss_pred eec---cCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcC-CCcchhccCCChhhhcccCc
Q 018576 85 CSL---DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEG-GIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 85 ~~~---~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~g~~~~~~~~~~~ 160 (353)
+.. ++|..++.|++|+.++.++.+....++++++.+...+.+++.|.+|+++++++ .++++..+|.++|+|+.+++
T Consensus 100 ~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~ 179 (372)
T 1fp1_D 100 STTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDK 179 (372)
T ss_dssp EEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCH
T ss_pred ecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCH
Confidence 851 11100368999999997765543257888988876778899999999999998 88898888988999999999
Q ss_pred hHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeC
Q 018576 161 RFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240 (353)
Q Consensus 161 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~ 240 (353)
+....|++.|...+......+++.++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++++++.+
T Consensus 180 ~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~ 259 (372)
T 1fp1_D 180 KMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGG 259 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeC
Confidence 99999999999888777788888886567789999999999999999999999999999999999999998889999999
Q ss_pred CCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 241 d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
|+++++|..|+|++.++||+|+++++.++|++++++|+|||+|+|.|...++....+........+++.|+... +++.+
T Consensus 260 d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~ 338 (372)
T 1fp1_D 260 DMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRER 338 (372)
T ss_dssp CTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCE
T ss_pred CcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CCccC
Confidence 99887776799999999999999988999999999999999999999987764322111112345666666533 68889
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCc-eEEEEEeC
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGN-FWVMEFYK 353 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~-~~vi~~~~ 353 (353)
+.++|.++|+++||+.+++.+...+ .++||++|
T Consensus 339 t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 339 TEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 9999999999999999999985433 69999986
No 8
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=4e-48 Score=360.12 Aligned_cols=340 Identities=30% Similarity=0.481 Sum_probs=289.2
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+-.++...|++++.+++.+++|++++++|||+.|..++ +|.|++|||+++|+ ++.+++.++||||+|++.|+|++..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence 44566678899999999999999999999999999852 48999999999999 3334789999999999999999751
Q ss_pred ----c-CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcC--CCcchhccCCChhhhcccCc
Q 018576 88 ----D-GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEG--GIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 88 ----~-~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~g~~~~~~~~~~~ 160 (353)
+ +|..+++|++|+.++.++.+. +.++++++.+...+.++..|.+|++.+++| .++|+..+|.++|+|+.++|
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTS-TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCC-CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence 0 111147899999998776554 358899998876778899999999999998 67888888888999999999
Q ss_pred hHHH--HHHHHHHhchhhhHHHHHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeE
Q 018576 161 RFNK--HFNTAMYNHTSLIMSNILESYK-GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEH 237 (353)
Q Consensus 161 ~~~~--~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~ 237 (353)
+..+ .|++.|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.+++++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999988777665 7777773 267778999999999999999999999999999999999999988788999
Q ss_pred EeCCCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCC---CCEEEEEeeecCCCCCCccccccccccchhhhhhC
Q 018576 238 VAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPE---DGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN 314 (353)
Q Consensus 238 ~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (353)
+.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+|+|.|...++....+........+++.|+...
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 320 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF 320 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC
Confidence 999999877767999999999999999899999999999999 99999999987764332111123445677676644
Q ss_pred CCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 315 PGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 315 ~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+++.+|.++|.++|+++||+.+++.+.++..++||++|
T Consensus 321 -~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 -LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp -SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred -CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 78999999999999999999999999888899999986
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.5e-48 Score=357.31 Aligned_cols=319 Identities=24% Similarity=0.363 Sum_probs=281.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS 90 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g 90 (353)
.....+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---- 74 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---- 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----
Confidence 566889999999999999999999999999986 49999999999999 999999999999999999986
Q ss_pred CCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHH
Q 018576 91 GARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAM 170 (353)
Q Consensus 91 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 170 (353)
+++.|++|+.++.+. .++.++++++.+...+.+ ..|.+|.+++++++++++..+|.++|+|+.++++....|++.|
T Consensus 75 -~~~~y~~t~~s~~l~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (334)
T 2ip2_A 75 -TRDGYANTPTSHLLR--DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM 150 (334)
T ss_dssp -TTTEEEECHHHHTTS--SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCCeEecCHHHHHHh--CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH
Confidence 257899999998777 344578898887765555 8999999999999999988889889999999999999999999
Q ss_pred HhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCC
Q 018576 171 YNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMF 243 (353)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~ 243 (353)
..+......+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|++
T Consensus 151 -~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 227 (334)
T 2ip2_A 151 -KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML 227 (334)
T ss_dssp -GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTT
T ss_pred -HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCC
Confidence 888777788888887 777 99999999999999999999999999999998788777652 68999999999
Q ss_pred CCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 244 QSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 244 ~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
+++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++.... .....+++.|+... +++.++.
T Consensus 228 ~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~ 302 (334)
T 2ip2_A 228 QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHRTT 302 (334)
T ss_dssp TCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBH
T ss_pred CCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCCCH
Confidence 877765 99999999999999989999999999999999999999987654321 23345666666654 7889999
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
++|.++|+++||+.+++.+.++..++|+++|
T Consensus 303 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 303 EEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 9999999999999999999988899999875
No 10
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1e-47 Score=356.53 Aligned_cols=336 Identities=29% Similarity=0.485 Sum_probs=287.2
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+-.++...+++++.+++.+++|++++++|||+.|..++ +|.|++|||+++|+ +|.+++.++|||++|++.|+|++.+
T Consensus 12 ~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~ 88 (352)
T 1fp2_A 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT 88 (352)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec
Confidence 44466778999999999999999999999999999752 48999999999999 2223779999999999999999851
Q ss_pred cCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHh-cCCCcchhccCCChhhhcccCchHHHHH
Q 018576 88 DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAIL-EGGIPFNRAHGMHAFEYGRVDPRFNKHF 166 (353)
Q Consensus 88 ~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (353)
+| ++.|++|+.++.+..+. +.++++++.+...+.++..|.+|++.++ +|.++++..+|.++|+|+.++++....|
T Consensus 89 -~~--~~~y~~t~~s~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f 164 (352)
T 1fp2_A 89 -KE--EESYALTVASELLVRGS-DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSF 164 (352)
T ss_dssp -SS--SEEEEECHHHHTTSTTS-SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred -CC--CCeEeCCHHHHHHhCCC-CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHH
Confidence 11 47899999999777554 3578999988767788999999999999 8888998888989999999999999999
Q ss_pred HHHHHhchhhhHHHHHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC
Q 018576 167 NTAMYNHTSLIMSNILESYK-GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245 (353)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~ 245 (353)
++.|...+....+. ++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++++++.+|++++
T Consensus 165 ~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~ 243 (352)
T 1fp2_A 165 NDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS 243 (352)
T ss_dssp HHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC
T ss_pred HHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCC
Confidence 99999887766666 67772 26778999999999999999999999999999999999999999888899999999887
Q ss_pred CCCCcEEEeccccccCCchHHHHHHHHHHHhCCC---CCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPE---DGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 246 ~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
+|..|+|++.++||+|+++++.++|++++++|+| ||+++|.|...++....+........+++.|+. . +++.+|.
T Consensus 244 ~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~ 321 (352)
T 1fp2_A 244 IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNE 321 (352)
T ss_dssp CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEH
T ss_pred CCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCH
Confidence 7767999999999999999889999999999999 999999999877643221011223355666665 4 5888999
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
++|.++|+++||+.+++.+.++..++||++|
T Consensus 322 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 322 EEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999999888889999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=9.1e-46 Score=344.59 Aligned_cols=324 Identities=16% Similarity=0.223 Sum_probs=259.9
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
-.++...+++++.+++.+++|++++++|||+.|..++ +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~-- 83 (363)
T 3dp7_A 12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE-- 83 (363)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec--
Confidence 3457788999999999999999999999999999832 59999999999999 999999999999999999875
Q ss_pred CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccC--CChhhhcccCchHHHH-
Q 018576 89 GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHG--MHAFEYGRVDPRFNKH- 165 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~~- 165 (353)
+++|++|+.++.++.+.. ...++.+ ..+..++.|.+|++++++|++++...+| .++|+++.++++..+.
T Consensus 84 ----~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 155 (363)
T 3dp7_A 84 ----EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKS 155 (363)
T ss_dssp ----TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHH
T ss_pred ----CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHH
Confidence 678999999987776543 2233333 2456788999999999999988888888 6799999988886653
Q ss_pred ---HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCe
Q 018576 166 ---FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHI 235 (353)
Q Consensus 166 ---~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv 235 (353)
|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.++++ ++|
T Consensus 156 ~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (363)
T 3dp7_A 156 WFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERI 231 (363)
T ss_dssp HHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGE
T ss_pred HHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccce
Confidence 5555544322 23444443 356789999999999999999999999999999998888877642 579
Q ss_pred eEEeCCCCCC---CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccc-cccccccchhh
Q 018576 236 EHVAGDMFQS---VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIE-SKSNSHIDVLM 310 (353)
Q Consensus 236 ~~~~~d~~~~---~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~~~~~ 310 (353)
+++.+|++++ +|+. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++....... .......++.+
T Consensus 232 ~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 311 (363)
T 3dp7_A 232 HGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTA 311 (363)
T ss_dssp EEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHH
T ss_pred EEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHh
Confidence 9999999983 6754 99999999999999999999999999999999999999987664321100 00111222233
Q ss_pred hhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC-CceEEEEEeC
Q 018576 311 MTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT-GNFWVMEFYK 353 (353)
Q Consensus 311 ~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~-~~~~vi~~~~ 353 (353)
+.. .+++.+|.++|.++|+++||+.+++.+.. .+.++|+.+|
T Consensus 312 ~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 312 MAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp SSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 332 36788999999999999999999998764 5699999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=3.3e-45 Score=342.50 Aligned_cols=325 Identities=21% Similarity=0.343 Sum_probs=277.6
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.+..+..+++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ ++..++|||++|++.|++++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~-- 82 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG-- 82 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC--
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe--
Confidence 46678899999999999999999999999999965 59999999999999 999999999999999999985
Q ss_pred CCCCcc--ceecccccccccCCCCCCChHHHHHHhcChhHH-HhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHH
Q 018576 89 GSGARR--RYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL-ESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKH 165 (353)
Q Consensus 89 ~g~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (353)
.++ .|.+|+.++.+..+. +.++++++.+...+..+ ..|.++.+.+++|.++++..+|.++|+++..+++....
T Consensus 83 ---~~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (374)
T 1qzz_A 83 ---EKQGRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADS 158 (374)
T ss_dssp ---CC-CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred ---CCCCeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHH
Confidence 145 899999988777554 45788888776445567 89999999999999998888898999999999999999
Q ss_pred HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEE
Q 018576 166 FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHV 238 (353)
Q Consensus 166 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~ 238 (353)
|++.|........+.+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++++++
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 237 (374)
T 1qzz_A 159 FDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 237 (374)
T ss_dssp HHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEE
Confidence 999998877776778888887 778899999999999999999999999999999998888877642 489999
Q ss_pred eCCCCCCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee--ecCCCCCCccccccccccchhhhhhCC
Q 018576 239 AGDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL--MLPEVPNTSIESKSNSHIDVLMMTQNP 315 (353)
Q Consensus 239 ~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (353)
.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|. ..++... ......+++.++...
T Consensus 238 ~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~- 312 (374)
T 1qzz_A 238 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLTFM- 312 (374)
T ss_dssp ECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH-
T ss_pred eCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHHhC-
Confidence 99998877775 999999999999998888999999999999999999998 6654321 122345566666544
Q ss_pred CCcccCHHHHHHHHHhcCCceeeEeeeCCce-----EEEEEeC
Q 018576 316 GGKERTKHEFMTLATGAGFSGIRSDLVTGNF-----WVMEFYK 353 (353)
Q Consensus 316 ~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~-----~vi~~~~ 353 (353)
+++.++.++|.++|+++||+.+++.+.+... ++|+++|
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 7889999999999999999999999988777 8998864
No 13
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-44 Score=331.87 Aligned_cols=315 Identities=19% Similarity=0.251 Sum_probs=270.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCc
Q 018576 14 AYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGAR 93 (353)
Q Consensus 14 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~ 93 (353)
..+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec------C
Confidence 678999999999999999999999999997 49999999999999 999999999999999999875 6
Q ss_pred cceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhc
Q 018576 94 RRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNH 173 (353)
Q Consensus 94 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 173 (353)
++|++|+.++.++...++.++++++.+...+..++.|.+|.++++++.++++ + |+++.++++....|.+.|...
T Consensus 74 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~ 147 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPM 147 (335)
T ss_dssp TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGG
T ss_pred CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHH
Confidence 8999999995444444446788888877566788999999999999887654 3 778888888899999999888
Q ss_pred hhhhHHHHHHhcccc--CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC
Q 018576 174 TSLIMSNILESYKGF--ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ 244 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~ 244 (353)
.......+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++
T Consensus 148 ~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 148 MANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp GHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred HhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 8777778888887 6 77899999999999999999999999999999998888777653 479999999998
Q ss_pred -CCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 245 -SVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 245 -~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
+++.+ |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++....+ ......++.|+...++++.++.
T Consensus 227 ~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~ 303 (335)
T 2r3s_A 227 VDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTF 303 (335)
T ss_dssp SCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCH
T ss_pred CCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCH
Confidence 67766 999999999999998899999999999999999999999876543221 2334556666665557889999
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEe
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~ 352 (353)
++|.++++++||+.+++.+.+++.++++.+
T Consensus 304 ~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 304 AEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 999999999999999999988777777654
No 14
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.6e-44 Score=336.24 Aligned_cols=324 Identities=20% Similarity=0.319 Sum_probs=278.5
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
.....++++++.+++.+++|.+++++|||+.|.. +|.|++|||+++|+ ++..++|+|++|++.|+|++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~--- 85 (360)
T 1tw3_A 17 QIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED--- 85 (360)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec---
Confidence 3557888999999999999999999999999975 59999999999999 999999999999999999985
Q ss_pred CCCccceecccccccccCCCCCCChHHHHHHhcChh-HHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHH
Q 018576 90 SGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV-FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNT 168 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (353)
.+++|.+|+.++.+..+. +.++++++.+...+. .+..|.+|.+.+++|.++++..+|.++|+++..+++....|..
T Consensus 86 --~~g~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~ 162 (360)
T 1tw3_A 86 --APGEFVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDS 162 (360)
T ss_dssp --ETTEEEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHH
T ss_pred --CCCeEEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHH
Confidence 257899999988777554 457888877654333 6788999999999999888888888899999889999999999
Q ss_pred HHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCC
Q 018576 169 AMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGD 241 (353)
Q Consensus 169 ~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d 241 (353)
.|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.++++ ++++++.+|
T Consensus 163 ~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 241 (360)
T 1tw3_A 163 LLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 241 (360)
T ss_dssp HHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 998887777778888887 778899999999999999999999999999999987788776542 489999999
Q ss_pred CCCCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee-cCCCCCCccccccccccchhhhhhCCCCcc
Q 018576 242 MFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM-LPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319 (353)
Q Consensus 242 ~~~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (353)
+++++|.. |+|++.++||+|+++++.++|++++++|+|||+++|.|.. .++.... .....+++.++... ++..
T Consensus 242 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~ 316 (360)
T 1tw3_A 242 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGAL 316 (360)
T ss_dssp TTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCC
T ss_pred CCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcC
Confidence 98877775 9999999999999988899999999999999999999988 5543211 22335566666544 7889
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeCCc-----eEEEEEeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVTGN-----FWVMEFYK 353 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~~~-----~~vi~~~~ 353 (353)
++.++|.++|+++||+++++.+.++. .++|+++|
T Consensus 317 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 317 RTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999999999999888765 88999875
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=9.9e-44 Score=330.65 Aligned_cols=311 Identities=16% Similarity=0.278 Sum_probs=263.4
Q ss_pred hHHHHHHHHHHh-hhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 10 DQSFAYANQLAM-GTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 10 ~~~~~~l~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.+....+++++. +++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-- 97 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-- 97 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee--
Confidence 456678888886 8999999999999999999987 49999999999999 999999999999999999986
Q ss_pred CCCCccceecccccccccCCCCC---CChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCch---H
Q 018576 89 GSGARRRYSLNSVSKYYVPNKDG---VSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPR---F 162 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~---~ 162 (353)
++.|++|+.+..++.+.++ .++++++.+. ...+++.|.+|.++++++.+ |+|+.++|+ .
T Consensus 98 ----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~ 162 (359)
T 1x19_A 98 ----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTRE 162 (359)
T ss_dssp ----TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHH
T ss_pred ----CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHH
Confidence 4689999976655555544 5788888775 46788999999999998754 566777888 8
Q ss_pred HHHHHHHHHhchh-hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCC
Q 018576 163 NKHFNTAMYNHTS-LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPH 234 (353)
Q Consensus 163 ~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~r 234 (353)
...|...|...+. ...+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++
T Consensus 163 ~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~ 241 (359)
T 1x19_A 163 DNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADR 241 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCC
Confidence 8999999999887 77788888888 88889999999999999999999999999999999888887764 257
Q ss_pred eeEEeCCCCC-CCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh
Q 018576 235 IEHVAGDMFQ-SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ 313 (353)
Q Consensus 235 v~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (353)
++++.+|+++ +++.+|+|++.++||+|+++++.++|++++++|+|||+++|.|...++.. .+. ..... .++..
T Consensus 242 v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~---~~~~~--~~~~~ 315 (359)
T 1x19_A 242 MRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPN---FDYLS--HYILG 315 (359)
T ss_dssp EEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTT-SCC---HHHHH--HHGGG
T ss_pred EEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCC-Cch---HHHHH--HHHHh
Confidence 9999999998 66666999999999999998899999999999999999999999876541 111 11111 33332
Q ss_pred CCCCcc----cCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 314 NPGGKE----RTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 314 ~~~g~~----~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
..+++. ++.++|.++|+++||+.+++.+.+ ..++++++|
T Consensus 316 ~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 316 AGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp GGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred cCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 224666 899999999999999999999887 889999876
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=1.2e-43 Score=329.36 Aligned_cols=320 Identities=14% Similarity=0.220 Sum_probs=264.8
Q ss_pred CCCccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 4 IVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
..++..-+....+++++.+++.+++|++++++|||+.|.+ |.|++|||+++|+ +++.++|||++|++.|+|
T Consensus 16 ~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll 86 (352)
T 3mcz_A 16 TEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALGLL 86 (352)
T ss_dssp CCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCe
Confidence 3344444555669999999999999999999999999964 8999999999999 999999999999999999
Q ss_pred eeeccCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCc-chhccCCChhhhcccCchH
Q 018576 84 ECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIP-FNRAHGMHAFEYGRVDPRF 162 (353)
Q Consensus 84 ~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~g~~~~~~~~~~~~~ 162 (353)
++. ++.|.+|+.+..++.+..+.+++.++.+. ...++.|.+|.+.+++|.+. |+. ..++..+++.
T Consensus 87 ~~~------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~ 152 (352)
T 3mcz_A 87 TKE------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRA 152 (352)
T ss_dssp EEE------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHH
T ss_pred Eec------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHH
Confidence 986 47899999998777777777888887654 45678999999999998753 222 1234678888
Q ss_pred HHHHHHHHHhchhhhHHHHHHhccccCC-CCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CC
Q 018576 163 NKHFNTAMYNHTSLIMSNILESYKGFAN-IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PH 234 (353)
Q Consensus 163 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~r 234 (353)
...|..+|...... +..+++.++ +.+ ..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++
T Consensus 153 ~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~ 230 (352)
T 3mcz_A 153 RDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGR 230 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCc
Confidence 89999999874433 347788887 766 899999999999999999999999999999998888776542 57
Q ss_pred eeEEeCCCCC-C--CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh
Q 018576 235 IEHVAGDMFQ-S--VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM 310 (353)
Q Consensus 235 v~~~~~d~~~-~--~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 310 (353)
++++.+|+++ + .+.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++....+ .....+++.|
T Consensus 231 v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~ 307 (352)
T 3mcz_A 231 VEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHM 307 (352)
T ss_dssp EEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHH
T ss_pred eEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHH
Confidence 9999999998 4 5665 999999999999999899999999999999999999999887653322 2334567777
Q ss_pred hhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 311 MTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 311 ~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+....+++.+|.++|.++|+++||++++.. .++.+++..+|
T Consensus 308 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 308 MVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 765557889999999999999999998843 35577777665
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.85 E-value=6.7e-21 Score=168.42 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=119.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i~~~~ 256 (353)
.+++.+|||||||+|.++..+++.+ |+++++++|+ +.|++.|+++ .+|+++++|+.+ +.+..|+|++.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3567899999999999999999986 6789999999 8888877642 579999999987 665569999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccc-ccchhhhhhC-------------CCCcccCH
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNS-HIDVLMMTQN-------------PGGKERTK 322 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~g~~~t~ 322 (353)
+||++++++..++|++++++|||||+|++.|...+.+.... ..... ..++...... ..-...|.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999988888999999999999999999998876542110 00000 0000000000 00123588
Q ss_pred HHHHHHHHhcCCceeeEee-eCCceEEEEEe
Q 018576 323 HEFMTLATGAGFSGIRSDL-VTGNFWVMEFY 352 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~ 352 (353)
+++.++|+++||+.++++. .-...+++.++
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 9999999999999998753 33444555443
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.84 E-value=4.8e-20 Score=160.43 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=127.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC-cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-D~ 251 (353)
..+...++...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34445444234668999999999999999999999999999999 777776654 2489999999988 55544 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccch--------h-hh---hhCCCCcc
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDV--------L-MM---TQNPGGKE 319 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~--------~-~~---~~~~~g~~ 319 (353)
|++..++|++++.+..++|++++++|+|||++++.+...+........ ....+... . .. ........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999998877789999999999999999999876543110000 00000000 0 00 00012345
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
++.++|.++|+++||+.+++.....+.+++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 6899999999999999999988777777665543
No 19
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.78 E-value=1.2e-19 Score=155.96 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=119.9
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..++ .++. +|||||||+|.++..+++. |+.+++++|. +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 34455554 4444 9999999999999999998 8889999999 7777776553 579999999988 66654
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++ ...+|++++++|+|||++++.+...+.................+..........++.++|.+
T Consensus 111 ~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
T 3dlc_A 111 YADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQN 188 (219)
T ss_dssp CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHH
T ss_pred cccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHH
Confidence 99999999999865 46899999999999999999886543210000000000000000000000233457899999
Q ss_pred HHHhcCCceeeEeeeCCceEEEEE
Q 018576 328 LATGAGFSGIRSDLVTGNFWVMEF 351 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~~~~~vi~~ 351 (353)
+|+++||+.+++.....+.+++..
T Consensus 189 ~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 189 VLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHcCCCeEEEEecCCceEEEEe
Confidence 999999999999988777766543
No 20
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.77 E-value=3e-18 Score=147.46 Aligned_cols=155 Identities=16% Similarity=0.187 Sum_probs=124.6
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 35566565 6778899999999999999999997 8889999999 7788777653 579999999987 66654
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++ ...+|++++++|+|||++++.+.......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 99999999999975 46899999999999999999987655431110 0122358899999
Q ss_pred HHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 328 LATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+++++||+.+++...+.....+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988877766666654
No 21
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.77 E-value=3.9e-19 Score=153.76 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=115.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~ 260 (353)
...+|||||||+|.++..+++..+ +++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++|.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 368999999999999999999877 8999998 7788776643 689999999988 66543 99999999777
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc---ccccccchh--------hhhhC-CC-------CcccC
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES---KSNSHIDVL--------MMTQN-PG-------GKERT 321 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~-~~-------g~~~t 321 (353)
+...+..++|++++++|+|||++++.+...+......... ....+.... ....+ .+ ....+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 7777788999999999999999999987532110000000 000000000 00000 00 01112
Q ss_pred HHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 322 KHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 322 ~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.+|.++|+++||+.+++...+...++|+++|
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred -hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 4899999999999999999988888998875
No 22
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.77 E-value=8.1e-18 Score=144.42 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=114.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCCCCCCC--cEEE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQSVPKG--DAIF 253 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~~~p~~--D~i~ 253 (353)
..+...+....+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+..+.+ |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555543456679999999999999999998 669999998 7788777653 67999999998754443 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCC-------cccCHHHHH
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGG-------KERTKHEFM 326 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~t~~~~~ 326 (353)
+.+++|++++++...+|++++++|+|||++++.+...+.......... ......... .+.+ ...+.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRT-LQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEE-CTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeee-cCCcchhhHhhcCCCHHHHH
Confidence 999999999887889999999999999999999987643211100000 000000000 0111 235899999
Q ss_pred HHHHhcCCceeeEeeeC
Q 018576 327 TLATGAGFSGIRSDLVT 343 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~~ 343 (353)
++|+++||++......+
T Consensus 190 ~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 190 ERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHTTEEEEEEEEET
T ss_pred HHHHHCCCEEEeeeccc
Confidence 99999999955444443
No 23
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.77 E-value=5.8e-18 Score=145.73 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=119.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCCCC-cEEEe
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVPKG-DAIFL 254 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~-D~i~~ 254 (353)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 456789999999999999999997 679999999 7778777653 489999999988 56544 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCHHHHHHHHHhcC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
..++|++++.+...+|++++++|+|||++++.++..+................+.. .........++.++|.++|+++|
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 192 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG 192 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCC
Confidence 99999999887777999999999999999999876543210000000000000000 00000112348899999999999
Q ss_pred CceeeEeeeCCceEEEEEeC
Q 018576 334 FSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 334 f~~v~~~~~~~~~~vi~~~~ 353 (353)
|+++.+. .....++++..|
T Consensus 193 f~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 193 FHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp EEEEEEE-CSSSEEEEEEEE
T ss_pred CEEEEee-ccceEEEEeehh
Confidence 9866554 446777776543
No 24
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.76 E-value=3.2e-18 Score=151.51 Aligned_cols=156 Identities=20% Similarity=0.301 Sum_probs=121.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCCC--
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~-- 249 (353)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345566565 6677899999999999999999987 679999999 7777766543 689999999988 66654
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++|++++++...+|++++++|+|||++++.+...+.... ........... . +...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~-~-~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQ-R-KYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHH-H-TCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhc-C-CCCCCCHHHHHHHH
Confidence 9999999999998778899999999999999999999987654111 11111111111 1 34467899999999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||+.+++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887653
No 25
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.76 E-value=3.1e-18 Score=151.47 Aligned_cols=158 Identities=15% Similarity=0.240 Sum_probs=118.7
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S 245 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~ 245 (353)
.......+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++.++.+|+.+ +
T Consensus 22 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 22 KGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 98 (260)
T ss_dssp -CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC
T ss_pred CHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC
Confidence 3334556677666 66788999999999999999999875 9999998 7788776542 579999999988 7
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCH
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTK 322 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~ 322 (353)
++.+ |+|++..++|++++. ..+|++++++|+|||++++.+...+..+ . ...+..... .........++.
T Consensus 99 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~ 170 (260)
T 1vl5_A 99 FTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSHHRAWKK 170 (260)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTCCCCCBH
T ss_pred CCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccccCCCCH
Confidence 7654 999999999999865 5999999999999999999988765431 0 111111111 111112455789
Q ss_pred HHHHHHHHhcCCceeeEeee
Q 018576 323 HEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~ 342 (353)
++|.++|+++||+.+++...
T Consensus 171 ~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 171 SDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEEe
Confidence 99999999999998877654
No 26
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.75 E-value=2.3e-17 Score=144.11 Aligned_cols=149 Identities=17% Similarity=0.286 Sum_probs=114.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAIF 253 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i~ 253 (353)
.+...++.++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |+|+
T Consensus 31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~ 106 (240)
T 3dli_A 31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVM 106 (240)
T ss_dssp HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEE
Confidence 34444443456789999999999999999997 568999999 7788888765 8999999876 45544 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+..++|++++++...+|++++++|+|||++++..+..... ....... ........++.++|.++++++|
T Consensus 107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~l~~~l~~aG 175 (240)
T 3dli_A 107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY--IDPTHKKPVHPETLKFILEYLG 175 (240)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT--TSTTCCSCCCHHHHHHHHHHHT
T ss_pred ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh--cCccccccCCHHHHHHHHHHCC
Confidence 9999999998888899999999999999999987643210 0111111 1011345678999999999999
Q ss_pred CceeeEeeeC
Q 018576 334 FSGIRSDLVT 343 (353)
Q Consensus 334 f~~v~~~~~~ 343 (353)
|+++++....
T Consensus 176 f~~~~~~~~~ 185 (240)
T 3dli_A 176 FRDVKIEFFE 185 (240)
T ss_dssp CEEEEEEEEC
T ss_pred CeEEEEEEec
Confidence 9998887654
No 27
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.74 E-value=2.1e-17 Score=148.97 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=117.6
Q ss_pred HHHHHhc---cccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CC
Q 018576 179 SNILESY---KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SV 246 (353)
Q Consensus 179 ~~~~~~~---~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~ 246 (353)
..+++.+ ....+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 4555555 126678899999999999999999987 469999999 7777776542 579999999988 66
Q ss_pred CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 247 PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 247 p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
+.+ |+|++..++|++++ ...+|++++++|+|||++++.++..+...... ....+.... . .....+.++
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~-~-~~~~~~~~~ 216 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRI-K-LHDMGSLGL 216 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHH-T-CSSCCCHHH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH------HHHHHHHHh-c-CCCCCCHHH
Confidence 654 99999999999987 57999999999999999999998765432111 111111111 1 233568999
Q ss_pred HHHHHHhcCCceeeEeee
Q 018576 325 FMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~ 342 (353)
|.++|+++||+++++...
T Consensus 217 ~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 217 YRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHCCCeEEEEEEC
Confidence 999999999999988765
No 28
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.74 E-value=2.1e-17 Score=149.47 Aligned_cols=164 Identities=16% Similarity=0.243 Sum_probs=123.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
...+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.++++ ++++++.+|+.+. +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 345666666 67788999999999999999999987 89999999 7788777642 3799999998754 444
Q ss_pred -cEEEeccccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc-----ccccccchhhhhhCCC
Q 018576 250 -DAIFLKWILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES-----KSNSHIDVLMMTQNPG 316 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 316 (353)
|+|++..++|++++ +....+|++++++|+|||++++.+...+......... ....+.++.....+++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999954 5678999999999999999999998765421000000 0000012222223457
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeeeCC
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLVTG 344 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~~~ 344 (353)
+..++.+++.++++++||+++++...+.
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 7888999999999999999998877643
No 29
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.74 E-value=2.2e-17 Score=146.92 Aligned_cols=157 Identities=11% Similarity=0.145 Sum_probs=120.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 248 (353)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 345666666 6778899999999999999999987 689999999 6777766542 479999999988 6665
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
+ |+|++..++|++++. .++|++++++|+|||++++.+.......... .....+..... .+.+..++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHHH
Confidence 4 999999999998764 6999999999999999999998765421110 00111111111 1255678999999
Q ss_pred HHHHhcCCceeeEeeeC
Q 018576 327 TLATGAGFSGIRSDLVT 343 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~~ 343 (353)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999998887653
No 30
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.74 E-value=3.3e-17 Score=146.93 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=120.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~- 249 (353)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 45566665 66778999999999999999997775 49999999 7777766542 589999999865 3444
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-----CccccccccccchhhhhhCCCCcccCHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPN-----TSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
|+|++..++|++++++...+|++++++|||||++++.+...+.... .+.........++.....++++..++.++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 210 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 210 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence 9999999999997667789999999999999999999987654211 00000000111111112245677789999
Q ss_pred HHHHHHhcCCceeeEeeeC
Q 018576 325 FMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~ 343 (353)
|.++++++||+++++...+
T Consensus 211 ~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHhCCcEEEEEEeCc
Confidence 9999999999999887653
No 31
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.73 E-value=6.4e-18 Score=148.67 Aligned_cols=149 Identities=17% Similarity=0.307 Sum_probs=116.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCCC--c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPKG--D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~--D 250 (353)
..++..++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45556555 5667899999999999999999886 557999998 7777766543 579999999987 56544 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++.++||++++++..++|++++++|+|||++++.+....... ...+. ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHHHHHHH
Confidence 99999999999887889999999999999999999997543321 01110 11234578999999999
Q ss_pred hcCCceeeEeeeC
Q 018576 331 GAGFSGIRSDLVT 343 (353)
Q Consensus 331 ~aGf~~v~~~~~~ 343 (353)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999886653
No 32
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.73 E-value=4.4e-17 Score=148.00 Aligned_cols=162 Identities=9% Similarity=0.061 Sum_probs=121.7
Q ss_pred HHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCC
Q 018576 170 MYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGD 241 (353)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d 241 (353)
+..........+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4344444445566665535667899999999999999999986 579999999 7788776642 479999999
Q ss_pred CCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 242 MFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 242 ~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
+.+ +++.+ |+|++..++|+++ ..++|++++++|+|||++++.+.......... ............ ..
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP-----SKWVSQINAHFE--CN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC-----CHHHHHHHHHHT--CC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch-----hHHHHHHHhhhc--CC
Confidence 988 66644 9999999999984 67999999999999999999998765532111 011111111111 23
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.++.++|.++++++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 678999999999999999988765
No 33
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.73 E-value=9.4e-18 Score=142.63 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=114.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
+.+|||||||+|.++..+++. +.+++++|. +.+++.+++ .++++++.+|+.+ +.+.+ |+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999998 569999999 778887776 4789999999987 66544 9999999999998777
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC-C
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT-G 344 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~-~ 344 (353)
...+|++++++|+|||++++.+...+... .+ .. . ......++.++|.++|+++||+++++...+ .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~---~~---~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------PM---YH---P--VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------EE---CC---S--SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------hh---hc---h--hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 88999999999999999999887544310 00 00 0 012345789999999999999999887654 3
Q ss_pred ceEEEE
Q 018576 345 NFWVME 350 (353)
Q Consensus 345 ~~~vi~ 350 (353)
++..+.
T Consensus 186 p~~~l~ 191 (203)
T 3h2b_A 186 PHAYLT 191 (203)
T ss_dssp SEEEEE
T ss_pred cchhhh
Confidence 444443
No 34
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.73 E-value=1.4e-17 Score=147.41 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=115.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEecc-ccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFLKW-ILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~~~-~Lh~~~~ 263 (353)
++..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +||++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 356899999999999999999885 48999999 7788877653 689999999988 55444 9999998 9999864
Q ss_pred -hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc---------c-----------ccccchhhhhhCCC------
Q 018576 264 -EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK---------S-----------NSHIDVLMMTQNPG------ 316 (353)
Q Consensus 264 -~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~------ 316 (353)
++..++|++++++|+|||++++.+...+..-....... . .......+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 46779999999999999999997654443211100000 0 00001111100001
Q ss_pred -----CcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 317 -----GKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 317 -----g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.+.+|.++|.++|+++||+++++........++..+|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999876665555555543
No 35
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.72 E-value=7.6e-17 Score=142.63 Aligned_cols=151 Identities=12% Similarity=0.145 Sum_probs=114.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEe
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFL 254 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~ 254 (353)
..+.+.++ ..++.+|||||||+|.++..+++ |+.+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 56788999999999999999998 6789999999 7889999888899999999987 66644 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
.+++|++++ ..++|++++++|| ||++++.+...+..... . ....+...... . .....+.+++. +|+++||
T Consensus 101 ~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~---~~~~~~~~~~~-~-~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-W---LYDYFPFLWED-A-LRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCC-G---GGGTCHHHHHH-H-HTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHH-H---HHHHHHHHhhh-h-hhhCCCHHHHH-HHHHcCC
Confidence 999999965 4699999999999 99999999864332111 0 00111100110 1 23345677888 9999999
Q ss_pred ceeeEeee
Q 018576 335 SGIRSDLV 342 (353)
Q Consensus 335 ~~v~~~~~ 342 (353)
+.+++...
T Consensus 171 ~~v~~~~~ 178 (261)
T 3ege_A 171 RRVEAIPF 178 (261)
T ss_dssp SEEEEEEC
T ss_pred CceeEEEe
Confidence 98887665
No 36
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.72 E-value=3.2e-17 Score=143.15 Aligned_cols=153 Identities=16% Similarity=0.292 Sum_probs=116.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~- 249 (353)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 44555565 77789999999999999999999875 8999998 7777776542 579999999987 66644
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++. ..+|++++++|+|||++++.+...+... . ...+.... ..........++.++|.+
T Consensus 88 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHHHH
Confidence 999999999999764 6899999999999999999998765431 0 11111111 111111245678999999
Q ss_pred HHHhcCCceeeEeee
Q 018576 328 LATGAGFSGIRSDLV 342 (353)
Q Consensus 328 ll~~aGf~~v~~~~~ 342 (353)
+|+++||+.+++...
T Consensus 160 ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 160 MFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCcEEEEEee
Confidence 999999998877654
No 37
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.72 E-value=4e-17 Score=143.87 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=116.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..+....++.+|||||||+|.++..+++.+|. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 344555543566789999999999999999999986 9999999 7777766542 469999999977 66644
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|+++ ..++|++++++|+|||++++.+.......... .....+... .....+.++|.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHH
Confidence 9999999999983 46899999999999999999997644322111 111222221 123568999999
Q ss_pred HHHhcCCceeeEeeeC
Q 018576 328 LATGAGFSGIRSDLVT 343 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~ 343 (353)
+|+++||+++++...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999887665
No 38
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.72 E-value=3.4e-17 Score=144.21 Aligned_cols=152 Identities=12% Similarity=0.065 Sum_probs=115.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 45566565 6778899999999999999999988 679999999 7788776542 579999999987 44334
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++..++|++++ ..++|++++++|||||++++.+......+.... ....+.. ......++.++|.++
T Consensus 104 fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~ 173 (256)
T 1nkv_A 104 CDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQACGV--SSTSDFLTLPGLVGA 173 (256)
T ss_dssp EEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHTTTC--SCGGGSCCHHHHHHH
T ss_pred CCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHH------HHHHHhc--ccccccCCHHHHHHH
Confidence 99999999999875 468999999999999999999987654322110 0000000 012245789999999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
|+++||+.+++...
T Consensus 174 l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 174 FDDLGYDVVEMVLA 187 (256)
T ss_dssp HHTTTBCCCEEEEC
T ss_pred HHHCCCeeEEEEeC
Confidence 99999999887543
No 39
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.71 E-value=4.2e-17 Score=144.73 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=116.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~- 249 (353)
.++..++...++.+|||||||+|.++..+++. |..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443567789999999999999999998 8889999999 7777776542 679999999987 65544
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++..++|++ + ..++|++++++|+|||++++.+.......... .....+... .....+.+++.++
T Consensus 115 fD~i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 999999999998 3 46899999999999999999998754332211 111222111 2345689999999
Q ss_pred HHhcCCceeeEeeeC
Q 018576 329 ATGAGFSGIRSDLVT 343 (353)
Q Consensus 329 l~~aGf~~v~~~~~~ 343 (353)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999887765
No 40
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.71 E-value=1.6e-17 Score=148.07 Aligned_cols=152 Identities=16% Similarity=0.251 Sum_probs=113.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999999 7777776542 579999999987 66544 99999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccch--hhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDV--LMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
+|++++. ..+|++++++|+|||++++.+.........+........... ..... .++..++..++.++|+++||+
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAY-MKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHH-TTCCTTGGGGHHHHHHHTTCE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHCCCC
Confidence 9999875 489999999999999999998643221000000000011111 11111 245567788999999999999
Q ss_pred eeeEeee
Q 018576 336 GIRSDLV 342 (353)
Q Consensus 336 ~v~~~~~ 342 (353)
++++...
T Consensus 192 ~v~~~~~ 198 (276)
T 3mgg_A 192 KIRVEPR 198 (276)
T ss_dssp EEEEEEE
T ss_pred eEEEeeE
Confidence 9887654
No 41
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.71 E-value=9.4e-17 Score=146.18 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=120.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 345666665 6677899999999999999999987 569999999 7777776542 579999999865 3444
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc-c----cccccchhhhhhCCCCcccCHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES-K----SNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
|+|++..++|++++++..++|++++++|+|||++++.++..+......... . .....++.....++++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 999999999999877788999999999999999999998765421000000 0 0001111111223467778999
Q ss_pred HHHHHHHhcCCceeeEeee
Q 018576 324 EFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~ 342 (353)
++.++++++||+++++...
T Consensus 236 ~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHhCCCEEEEEEec
Confidence 9999999999999887664
No 42
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.71 E-value=4.9e-17 Score=141.58 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=115.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEe-ccccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFL-KWILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~-~~~Lh~~~~ 263 (353)
.+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++|++.+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999876 8999999 7888877654 679999999987 55444 99995 559998854
Q ss_pred -hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc---------c-----------ccccchhhhhhCCCC-----
Q 018576 264 -EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK---------S-----------NSHIDVLMMTQNPGG----- 317 (353)
Q Consensus 264 -~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~g----- 317 (353)
++..++|++++++|+|||++++.+...++......... . .....+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999998766544321100000 0 000011111100011
Q ss_pred ------cccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 318 ------KERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 318 ------~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+.+|.++|.++|+++||+++.+....+...++.++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777665555666776654
No 43
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.70 E-value=3.7e-17 Score=139.13 Aligned_cols=141 Identities=9% Similarity=0.048 Sum_probs=107.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------------------CCCeeEEeC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------------------HPHIEHVAG 240 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~ 240 (353)
.++..+. ..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3444444 556789999999999999999997 569999999 778877653 257999999
Q ss_pred CCCC-CCCC--C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 241 DMFQ-SVPK--G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 241 d~~~-~~p~--~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
|+.+ +.+. . |+|++..++|++++++..+++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------~--------~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------L--------EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------S--------SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------c--------CCC
Confidence 9988 5442 3 999999999999877778899999999999999666554332110 0 001
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 112578999999998 9998776554
No 44
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.70 E-value=2.4e-17 Score=136.01 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=115.1
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCCCCCCC--cEEEecc
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQSVPKG--DAIFLKW 256 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~--D~i~~~~ 256 (353)
+++.++ ..+..+|||||||+|.++..+++... +++++|. +.+++.+++ .+++++..+| .+++.+ |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344444 66778999999999999999999874 9999998 777777765 4789999999 445543 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
++|++++ ...+|++++++|+|||++++.+.......... +....++.++|.++|+ ||++
T Consensus 84 ~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 9999865 46999999999999999999987654421110 0112368999999998 9999
Q ss_pred eeEeeeCCceEEEEEe
Q 018576 337 IRSDLVTGNFWVMEFY 352 (353)
Q Consensus 337 v~~~~~~~~~~vi~~~ 352 (353)
+++...+.....+.++
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999988766666554
No 45
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.70 E-value=5.8e-17 Score=146.27 Aligned_cols=172 Identities=9% Similarity=0.081 Sum_probs=118.5
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-C
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-S 245 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~ 245 (353)
....++..++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++++|+.+ +
T Consensus 71 ~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3455666555 3 3349999999999999999997 578999999 7788877653 579999999988 5
Q ss_pred CCCC-cEEEec-cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC--ccc--------------cccc---c
Q 018576 246 VPKG-DAIFLK-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT--SIE--------------SKSN---S 304 (353)
Q Consensus 246 ~p~~-D~i~~~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~--------------~~~~---~ 304 (353)
.+.. |+|++. .++|++++++..++|++++++|+|||+|++.....+..... ... .... .
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 226 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE 226 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence 5555 988854 77888877778899999999999999999987654321000 000 0000 0
Q ss_pred ccchhhhh----------hCCCCcccCHHHHHHHHHhcCCceeeEeeeC------CceEEEEEe
Q 018576 305 HIDVLMMT----------QNPGGKERTKHEFMTLATGAGFSGIRSDLVT------GNFWVMEFY 352 (353)
Q Consensus 305 ~~~~~~~~----------~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~------~~~~vi~~~ 352 (353)
...+.... .....+.++.++|.++|+++||+++++.+.. ....+++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00000000 0001124699999999999999999998875 234566553
No 46
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.70 E-value=5.5e-17 Score=146.87 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=113.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHH-HHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAIT-SKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.++++ ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999996 6789999999999 7777776542 459999999988 56644 9999999
Q ss_pred ccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc--------chhhhhhCCC--CcccCHHHH
Q 018576 257 ILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI--------DVLMMTQNPG--GKERTKHEF 325 (353)
Q Consensus 257 ~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--g~~~t~~~~ 325 (353)
++|++++.. ..++|++++++|+|||++++.+...+....... .+..... ...+...... ...++.++|
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999996554 457999999999999999998876554322110 0000000 0001111101 134789999
Q ss_pred HHHHHhcCCceeeEeeeC
Q 018576 326 MTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 326 ~~ll~~aGf~~v~~~~~~ 343 (353)
.++|+++||+++++....
T Consensus 275 ~~~l~~aGF~~v~~~~~~ 292 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDR 292 (305)
T ss_dssp HHHHHHTTCEEEEEECCT
T ss_pred HHHHHHCCCEEEEEEccc
Confidence 999999999999988654
No 47
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.69 E-value=3.5e-17 Score=143.02 Aligned_cols=138 Identities=15% Similarity=0.228 Sum_probs=110.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh 259 (353)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999887 568999998 7788776543 358899999876 55553 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
+++++....+|++++++|+|||++++.+...+.. . .++. ......++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-------~---~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-------V---ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-------E---EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc-------c---eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998878899999999999999999999876541 0 1110 11233468999999999999999988
Q ss_pred eeeC
Q 018576 340 DLVT 343 (353)
Q Consensus 340 ~~~~ 343 (353)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
No 48
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.69 E-value=2.5e-16 Score=137.45 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 35679999999999999999998 569999999 7788877664 689999999988 66554 999999999998
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++. ..+|++++++|+|||++++.+......... . ..... ... ......++.+++.++++++||++++...
T Consensus 130 ~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~---~~~~~-~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKSDGYACIAILGPTAKPRE---N---SYPRL-YGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG---G---GGGGG-GTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh---h---hhhhh-ccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 654 589999999999999999998654332110 0 01110 110 1123457899999999999999998764
Q ss_pred e
Q 018576 342 V 342 (353)
Q Consensus 342 ~ 342 (353)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
No 49
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.69 E-value=9.8e-17 Score=149.21 Aligned_cols=215 Identities=10% Similarity=-0.003 Sum_probs=140.4
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCCCCChH
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLG 115 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~ 115 (353)
++|..| . +|.|++|||+.+++ +++.+++||+.|++.|+++.. ++ |++|+.++.++.+.+..+..
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~------~~-~~lt~~~~~~l~~~~~~~~~ 110 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE------DG-VKLTEKGEELVAEYGIGKRY 110 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC------CC-EEECHHHHHHHHhcCccccc
Confidence 789999 5 38999999999999 999999999999999999874 23 99998876554432221111
Q ss_pred HHHH-Hhc-----ChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccC
Q 018576 116 PALQ-MIQ-----DKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFA 189 (353)
Q Consensus 116 ~~~~-~~~-----~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 189 (353)
+.+. ... ...+...|..+.+.++....+. ..++ +.+. .++ ....+.. .... .. ..
T Consensus 111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~----~~~~-~~~--~~~~~~l---------~~~~-~~-~~ 171 (373)
T 2qm3_A 111 DFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-HEFD----QAYV-TPE--TTVARVI---------LMHT-RG-DL 171 (373)
T ss_dssp C------------CGGGHHHHHHHHHHHTTCCCCC-GGGT----CCCB-CHH--HHHHHHH---------HHHH-TT-CS
T ss_pred cccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-hhcC----Ceec-CHH--HHHHHHH---------HHhh-cC-CC
Confidence 1100 000 0111123344555555332211 1111 1000 111 1111100 0111 11 23
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC----C-cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK----G-DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~----~-D~i~~~~~ 257 (353)
++.+||||| |+|.++..+++..|+.+++++|+ +.+++.++++ ++++++.+|+.+++|. . |+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 468999999 99999999999988889999999 7888877653 3799999999875542 3 99999987
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++.. ....++++++++|+|||++++.+..
T Consensus 251 ~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 7653 2579999999999999977666654
No 50
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.69 E-value=1.3e-16 Score=139.67 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=107.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCCCCCCC--cEEEeccccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQSVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~~~~ 263 (353)
.++.+|||||||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|+.+..+.+ |+|++.++||++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567999999999999999999876 7999998 7788777653 28999999997743433 99999999999976
Q ss_pred hHHHHHHHHHH-HhCCCCCEEEEEeeecCCCCCCcc--ccccccccch--hhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 264 EHCLKLLKNCY-KSVPEDGKVIVVELMLPEVPNTSI--ESKSNSHIDV--LMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 264 ~~~~~~L~~~~-~~L~pgG~l~i~e~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
. .++|++++ ++|+|||++++.++.......... .........+ .... ......++.++|.++|+++||++++
T Consensus 119 ~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 119 P--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp H--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred H--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccccc-ccccccCCHHHHHHHHHHCCCeEEE
Confidence 5 69999999 999999999998864322100000 0000000000 0001 1134567999999999999999988
Q ss_pred Eeee
Q 018576 339 SDLV 342 (353)
Q Consensus 339 ~~~~ 342 (353)
+...
T Consensus 196 ~~~~ 199 (250)
T 2p7i_A 196 RSGI 199 (250)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 7643
No 51
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.69 E-value=8.7e-17 Score=137.51 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=109.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC-cEEEeccccccCCch
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDDE 264 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~ 264 (353)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.. +.+.. |+|++..+||+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999987 569999999 7788888766578889999877 52233 999999999999977
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC-CceeeEeee
Q 018576 265 HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG-FSGIRSDLV 342 (353)
Q Consensus 265 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG-f~~v~~~~~ 342 (353)
+...+|++++++|+|||++++.......... .... .....++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGR--------DKLA-------RYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--------CTTS-------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--------cccc-------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 8899999999999999999998654332100 0000 0123468999999999999 999987654
No 52
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.69 E-value=1.5e-16 Score=148.55 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC--------------CCeeEEeCCCCC-------C
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH--------------PHIEHVAGDMFQ-------S 245 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~-------~ 245 (353)
.++.+|||||||+|.++..+++.+ |..+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999987 7899999999 7788777653 689999999986 4
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
++.+ |+|++..++|++++ ..++|++++++|||||+|++.+.......... . .......... .+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~--~~~~~~~~~~-~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEA----A--QQDPILYGEC-LGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHH----H--HHCHHHHHTT-CTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHh----H--hhhHHHhhcc-cccCCCHH
Confidence 4544 99999999999876 46999999999999999999998765321110 0 1111111111 34567889
Q ss_pred HHHHHHHhcCCceeeEee
Q 018576 324 EFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~ 341 (353)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999886654
No 53
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.69 E-value=2.6e-16 Score=140.06 Aligned_cols=140 Identities=18% Similarity=0.232 Sum_probs=108.3
Q ss_pred CCCeEEEEcCCc---hHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCC------------CC--
Q 018576 190 NIKQLVDVGGNL---GVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQS------------VP-- 247 (353)
Q Consensus 190 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~------------~p-- 247 (353)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 888887764 36899999999762 22
Q ss_pred CCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 248 KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 248 ~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
..|+|++..+||++++++..++|++++++|+|||+|++.+...+. ... .....+....... ....++.+++.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~-~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENLG-EGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHHS-CCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcCC-CCccCCHHHHHH
Confidence 239999999999999877889999999999999999999987532 111 1111222221112 355689999999
Q ss_pred HHHhcCCceee
Q 018576 328 LATGAGFSGIR 338 (353)
Q Consensus 328 ll~~aGf~~v~ 338 (353)
+| .||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 5998765
No 54
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.69 E-value=2.5e-16 Score=135.46 Aligned_cols=143 Identities=16% Similarity=0.127 Sum_probs=103.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCC-CCCC-C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQ-SVPK-G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p~-~-D~i 252 (353)
..++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++. ++++++.+|+.. +.+. . |+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34578999999999999999999999899999999 7788777653 289999999965 4433 3 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH----HH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM----TL 328 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~----~l 328 (353)
++..++|++++++..++|++++++|+|||.+++.... +..... .......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~-~~~~~~------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l 178 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK-EYNFHY------GNLFEGNLRH-RDHRFEWTRKEFQTWAVKV 178 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG-GGGGCC------CCT-----GG-GCCTTSBCHHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch-hhhhhh------cccCcccccc-cCceeeecHHHHHHHHHHH
Confidence 9999999999888889999999999999966554432 111000 0000000000 0123346888888 78
Q ss_pred HHhcCCceee
Q 018576 329 ATGAGFSGIR 338 (353)
Q Consensus 329 l~~aGf~~v~ 338 (353)
++++||++..
T Consensus 179 ~~~~Gf~v~~ 188 (219)
T 3jwg_A 179 AEKYGYSVRF 188 (219)
T ss_dssp HHHHTEEEEE
T ss_pred HHHCCcEEEE
Confidence 8999997543
No 55
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.68 E-value=8.8e-17 Score=144.04 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=113.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 250 (353)
.+.+.+....++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +.++. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444433567889999999999999999999985 89999999 7777766542 379999999988 55555 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec-----C---CCCCCccccccccccchhh--hhhCCCCccc
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML-----P---EVPNTSIESKSNSHIDVLM--MTQNPGGKER 320 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~-----~---~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~ 320 (353)
+|++..++|++++. .++|++++++|+|||++++.++.. . ++...+.......+..+.. .... +....
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-GKDGN 168 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT-CCCTT
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhh-ccccc
Confidence 99999999999765 599999999999999999998761 1 0000000000111111111 1111 33445
Q ss_pred CHHHHHHHHHhcCCceeeEee
Q 018576 321 TKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+..++.++|+++||+.+++..
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEE
Confidence 677899999999999887743
No 56
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=1.4e-16 Score=138.60 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=106.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccccccC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWILHDW 261 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~~ 261 (353)
.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999976 5678999999 7777776542 4599999999883343 4 999999999999
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++++..++|++++++|+|||++++.+......... ....++.++|.++|+++||+++++..
T Consensus 146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 97788899999999999999999988654321100 11125789999999999999998876
Q ss_pred eC
Q 018576 342 VT 343 (353)
Q Consensus 342 ~~ 343 (353)
.+
T Consensus 207 ~~ 208 (235)
T 3lcc_A 207 NP 208 (235)
T ss_dssp CT
T ss_pred cC
Confidence 64
No 57
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.68 E-value=1.6e-16 Score=139.83 Aligned_cols=159 Identities=12% Similarity=0.089 Sum_probs=110.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAI 252 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i 252 (353)
.+...++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4445444 446789999999999999999998655 9999999 7788776653 689999999987 66544 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC--C---------CCCccccccccccc-----hhhhhhCCC
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE--V---------PNTSIESKSNSHID-----VLMMTQNPG 316 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~--~---------~~~~~~~~~~~~~~-----~~~~~~~~~ 316 (353)
++..++|++++ ..++|++++++|+|||++++....... . ............++ .........
T Consensus 113 ~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 99999999865 579999999999999999997543210 0 00000000000000 000000001
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
...+|.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 12249999999999999999988754
No 58
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.67 E-value=1.3e-16 Score=137.09 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=103.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCC-CCCC-C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQ-SVPK-G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p~-~-D~i 252 (353)
..+..+|||||||+|.++..+++..|..+++++|. +.+++.+++. .+++++.+|+.. +.+. . |+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 44578999999999999999999999899999998 7777776542 279999999865 4432 3 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH----HH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM----TL 328 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~----~l 328 (353)
++..++|+++++...++|++++++|+|||.+++........ .+.......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFANLPAGKLRH-KDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhcccccccccc-cccccccCHHHHHHHHHHH
Confidence 99999999998888899999999999999776655421100 000000000000 0123346888888 88
Q ss_pred HHhcCCceee
Q 018576 329 ATGAGFSGIR 338 (353)
Q Consensus 329 l~~aGf~~v~ 338 (353)
++++||+++.
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998643
No 59
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.67 E-value=5.9e-16 Score=135.05 Aligned_cols=159 Identities=12% Similarity=0.103 Sum_probs=110.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAI 252 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i 252 (353)
.+...++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4455454 4567899999999999999999873 238999999 7777777643 479999999987 55543 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC--CCCCcccc--------cccccc-----chhhhhhCCCC
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE--VPNTSIES--------KSNSHI-----DVLMMTQNPGG 317 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~--~~~~~~~~--------~~~~~~-----~~~~~~~~~~g 317 (353)
++..++|++++ ..++|++++++|+|||++++.+..... .....+.. ...... ...........
T Consensus 112 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 99999999875 469999999999999999998753210 00000000 000000 00001000022
Q ss_pred cccCHHHHHHHHHhcCCceeeEeee
Q 018576 318 KERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 318 ~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
..+|.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3368999999999999999988654
No 60
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.66 E-value=6.1e-16 Score=137.72 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=113.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecch-H------HHhhCCCC-------CCeeEEeCC-C
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQP-H------VIEHAPLH-------PHIEHVAGD-M 242 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~------~~~~a~~~-------~rv~~~~~d-~ 242 (353)
..+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|++ . +++.++++ ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35566665 6778899999999999999999996 77899999994 3 66665442 579999998 4
Q ss_pred CC---CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC--
Q 018576 243 FQ---SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP-- 315 (353)
Q Consensus 243 ~~---~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 315 (353)
.. +++.+ |+|++..++|++++.. .+++.++++++|||++++.+...+..................+....+
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 33 34443 9999999999998764 478888888888999999998775532111000000000000100000
Q ss_pred --C-CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 316 --G-GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 316 --~-g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
+ ...++.++|.++++++||+++++...
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 1 23578999999999999999887665
No 61
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=3.3e-16 Score=139.87 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=112.0
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEec
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFLK 255 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~~ 255 (353)
.+++.+. ..++.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. +++++..+|+.+ +.+.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56678999999999999999998 7889999999 7788877654 689999999987 55444 999999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh------hCCCCcccCHHHHHHHH
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT------QNPGGKERTKHEFMTLA 329 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~t~~~~~~ll 329 (353)
.++|++++. ..+|++++++|+|||++++........ .. ............ .......++.++|.++|
T Consensus 125 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--KY---ILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--HH---HHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--HH---HHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 999998764 589999999999999999977643221 00 000000000000 00012345899999999
Q ss_pred HhcCCceeeEeee
Q 018576 330 TGAGFSGIRSDLV 342 (353)
Q Consensus 330 ~~aGf~~v~~~~~ 342 (353)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999999876654
No 62
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.65 E-value=3.6e-16 Score=140.06 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=111.9
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C-CCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S-VPK 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~-~p~ 248 (353)
..++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555554 23679999999999999999998 679999999 7788777653 679999999987 3 444
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh-------hCCCCcc
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT-------QNPGGKE 319 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~ 319 (353)
+ |+|++..++|++++. .++|++++++|+|||++++.+......... ............. .......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 999999999999765 689999999999999999988753221000 0000000000000 0012345
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
++.++|.++|+++||+++++....
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 789999999999999999887654
No 63
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=2.4e-16 Score=138.97 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=109.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCC-CCCCC--cEEEe
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQ-SVPKG--DAIFL 254 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~i~~ 254 (353)
.++..++ ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+ + +.+ |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 4566565 56778999999999999999999999999999999 778887765 3789999999987 5 443 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccc---cccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSN---SHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
..++|++++ ..++|++++++|+|||++++.++.....+......... .+..............++.++|.++|++
T Consensus 102 ~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (259)
T 2p35_A 102 NAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSP 179 (259)
T ss_dssp ESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGG
T ss_pred eCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHh
Confidence 999999865 46899999999999999999886432110000000000 0000000000002345789999999999
Q ss_pred cCCce
Q 018576 332 AGFSG 336 (353)
Q Consensus 332 aGf~~ 336 (353)
+||++
T Consensus 180 aGf~v 184 (259)
T 2p35_A 180 KSSRV 184 (259)
T ss_dssp GEEEE
T ss_pred cCCce
Confidence 99974
No 64
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.65 E-value=9.9e-16 Score=132.79 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=107.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCC-CCCCC--cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.. +++.+ |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45789999999999999999998 679999998 6677665431 258999999987 66544 9999
Q ss_pred eccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC--------------CCCc
Q 018576 254 LKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN--------------PGGK 318 (353)
Q Consensus 254 ~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~ 318 (353)
+..++|++++.+ ..++|++++++|+|||++++.+......... . .......+...... ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 999999997643 5689999999999999999999765332100 0 00000000000000 0013
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.++.++|.++|+++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 578999999999999999887643
No 65
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=144.06 Aligned_cols=145 Identities=14% Similarity=0.215 Sum_probs=104.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------------------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------------------------------------ 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 232 (353)
.+.+|||||||+|.++..+++.+|..+++++|+ +.+++.|+++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999 7777766432
Q ss_pred ----------------------------CCeeEEeCCCCCCC------CC-C-cEEEeccccccC----CchHHHHHHHH
Q 018576 233 ----------------------------PHIEHVAGDMFQSV------PK-G-DAIFLKWILHDW----DDEHCLKLLKN 272 (353)
Q Consensus 233 ----------------------------~rv~~~~~d~~~~~------p~-~-D~i~~~~~Lh~~----~~~~~~~~L~~ 272 (353)
.+|+|+.+|+.... +. . |+|++..+++++ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 47999999998622 33 3 999999999655 66678899999
Q ss_pred HHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh--cCCceeeEeee
Q 018576 273 CYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG--AGFSGIRSDLV 342 (353)
Q Consensus 273 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~--aGf~~v~~~~~ 342 (353)
++++|+|||+|++.......... ....... ..... .......+++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~------~~~~~~~-~~~~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGK------RKTLTET-IYKNY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHT------TTTSCHH-HHHHH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhh------hhcccHH-HHhhh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999985432211000 0000000 00000 1123447899999999 99998887654
No 66
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.64 E-value=5.4e-16 Score=133.67 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC-----CCCC--cE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS-----VPKG--DA 251 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-----~p~~--D~ 251 (353)
.++..+. ...+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4455554 445689999999999999999988 669999999 78888888778888888887542 2222 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC-----CCCcccCHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN-----PGGKERTKHEFM 326 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~t~~~~~ 326 (353)
|++.+++| +.+ ...+|++++++|+|||++++.+............. .+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQD--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD---GWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSC--CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC---EEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhh--HHHHHHHHHHHhCCCeEEEEEecCccccCcccccc---ccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 544 46999999999999999999987654322111000 01100000000 011346899999
Q ss_pred HHHHhcCCceeeEee
Q 018576 327 TLATGAGFSGIRSDL 341 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~ 341 (353)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998875
No 67
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.63 E-value=3e-15 Score=125.76 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=107.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEEe
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIFL 254 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~~ 254 (353)
.++..+ .++..+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 444444 346789999999999999999987 569999999 7777777653 679999999987 66543 99999
Q ss_pred c-cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 255 K-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 255 ~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
. .++|+++++....+|++++++|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999887778899999999999999999865321 1256889999999999
Q ss_pred CceeeEeee
Q 018576 334 FSGIRSDLV 342 (353)
Q Consensus 334 f~~v~~~~~ 342 (353)
|++++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999877543
No 68
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.63 E-value=3e-15 Score=126.43 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=109.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~-D 250 (353)
.+.+.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444455 455679999999999999999987 679999999 7777776542 479999999987 55444 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++..++|++++++..++|++++++|+|||++++++...+...... ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999877788999999999999999999887654421100 01223467889999998
Q ss_pred hcCCceeeEee
Q 018576 331 GAGFSGIRSDL 341 (353)
Q Consensus 331 ~aGf~~v~~~~ 341 (353)
+ |++++...
T Consensus 164 ~--f~~~~~~~ 172 (199)
T 2xvm_A 164 G--WERVKYNE 172 (199)
T ss_dssp T--SEEEEEEC
T ss_pred C--CeEEEecc
Confidence 6 99887654
No 69
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.62 E-value=1.1e-15 Score=135.06 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=104.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556789999999999999999987 578999998 777776653 2689999999987 66554 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC---CCcccCHHHHHHHHHhcCCc
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP---GGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~t~~~~~~ll~~aGf~ 335 (353)
|++++ ...+|++++++|+|||++++. ...++. . ........+..+......+ .....+.+++.++|+++||+
T Consensus 115 ~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAEA-S-PEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEECC-C-HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCCc-c-HHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 99875 468999999999999999988 221110 0 0000000011111111011 11345788999999999999
Q ss_pred eeeEee
Q 018576 336 GIRSDL 341 (353)
Q Consensus 336 ~v~~~~ 341 (353)
++.+..
T Consensus 190 ~~~~~~ 195 (263)
T 2yqz_A 190 PRTREV 195 (263)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 776543
No 70
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=128.81 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=102.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEec
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLK 255 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~ 255 (353)
..++..+....+..+|||||||+|.++..+. .+++++|.+.. ++++..+|+.+ +++.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455544434556899999999999988772 68999998433 67889999987 66554 999999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.++|+ . +...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 3 357999999999999999999875310 12688999999999999
Q ss_pred eeeEeeeCCceEEEEEeC
Q 018576 336 GIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 336 ~v~~~~~~~~~~vi~~~~ 353 (353)
+++.........++.++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 988776666666666654
No 71
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.62 E-value=1.8e-15 Score=130.21 Aligned_cols=137 Identities=17% Similarity=0.142 Sum_probs=102.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHH
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHC 266 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~ 266 (353)
+.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +++.+ |+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 789999999999999988764 99998 7788877765 79999999877 66543 999999999998754
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 267 LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 267 ~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.++|++++++|+|||++++.+...... ......... ...........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccH-----HHHHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 689999999999999999988643211 000000000 0000011234579999999999999999887654
No 72
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.61 E-value=6.4e-16 Score=134.95 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecc-cccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKW-ILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~-~Lh~ 260 (353)
+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +||+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 468999999 7788777653 279999999987 55544 9999998 9999
Q ss_pred CCc-hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDD-EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~-~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+++ ++..++|++++++|+|||++++...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 843 6678999999999999999998443
No 73
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.61 E-value=2.8e-15 Score=131.91 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.++++++++++++|+.+ +++++ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45799999999999999999875 48999999 7899999999999999999988 78765 99999999997753
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
.+++++++++|||||+|+++....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4789999999999999999886543
No 74
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=9.8e-16 Score=134.03 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=107.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---CCCeeEEeCCCCC-CCCC-------CcEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---HPHIEHVAGDMFQ-SVPK-------GDAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~-------~D~i~~~ 255 (353)
..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++ ..+++++++|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 35668999999999999999999987 8999998 777877654 2589999999987 3322 3899999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc----ccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES----KSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
.++|++++++..++|++++++|+|||++++.+...+......... .........+.. ......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHHC--
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHHh--
Confidence 999999977789999999999999999999998654310000000 000000000000 0112246899999999
Q ss_pred cCCceeeEee
Q 018576 332 AGFSGIRSDL 341 (353)
Q Consensus 332 aGf~~v~~~~ 341 (353)
+||+++....
T Consensus 209 aGf~~~~~~~ 218 (245)
T 3ggd_A 209 PDFEILSQGE 218 (245)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEeccc
Confidence 9999887543
No 75
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.60 E-value=4.8e-15 Score=129.23 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecc-cccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKW-ILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~-~Lh~ 260 (353)
+..+|||||||+|.++..+++. .+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999999887 79999999 7788777643 579999999987 55544 9999986 9998
Q ss_pred C-CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 W-DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~-~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ +.++..++|++++++|+|||++++.-
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 8 45667899999999999999998743
No 76
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.60 E-value=9.5e-16 Score=130.64 Aligned_cols=150 Identities=8% Similarity=-0.029 Sum_probs=106.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
..+..+|||||||+|.++..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345689999999999985555544 4679999999 7788776643 579999999987 66544 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC-CCcccCHHHHHHHHHhcCCcee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP-GGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~t~~~~~~ll~~aGf~~v 337 (353)
|+++.++..++|++++++|+|||++++.+...++.............+.. .....+ ....++.+++.++|+++||...
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 178 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQ-LERGEKVIHSYVSLEEADKYFKDMKVLFK 178 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEE-CC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhcccccee-ccCCCceeEEecCHHHHHHHHhhcCceee
Confidence 99987778899999999999999999999876543211100000000000 000000 1245689999999999998765
Q ss_pred eE
Q 018576 338 RS 339 (353)
Q Consensus 338 ~~ 339 (353)
+.
T Consensus 179 ~~ 180 (209)
T 2p8j_A 179 ED 180 (209)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 77
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.60 E-value=1.8e-15 Score=130.59 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=109.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAI 252 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i 252 (353)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|. +.+++.+++.. .++..+|+.+ +++.+ |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 45689999999999999999998 4 89999999 77788776543 3788888865 34433 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcc--ccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSI--ESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
++..++|++++. ..+|++++++|+|||++++..+.......... ...+.. ....... ......++.++|.++|+
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~ 173 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTY-TEYGLLD-KTHIRFFTFNEMLRMFL 173 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCC-BSSSTTB-TTCCCCCCHHHHHHHHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCcee-ccCCCCC-cceEEEecHHHHHHHHH
Confidence 999999998765 59999999999999999998764322100000 000000 0000000 00224578999999999
Q ss_pred hcCCceeeEeeeC
Q 018576 331 GAGFSGIRSDLVT 343 (353)
Q Consensus 331 ~aGf~~v~~~~~~ 343 (353)
++||+++++....
T Consensus 174 ~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 174 KAGYSISKVDRVY 186 (230)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCeEEEEEecc
Confidence 9999998887653
No 78
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.58 E-value=3e-15 Score=134.60 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCchHHHH----HHHHHCCCCeE--EEecc-hHHHhhCCCC-------CCeeE--EeCCCCC-C------
Q 018576 189 ANIKQLVDVGGNLGVTLQ----AITSKYPYIKG--INFDQ-PHVIEHAPLH-------PHIEH--VAGDMFQ-S------ 245 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~rv~~--~~~d~~~-~------ 245 (353)
.++.+|||||||+|.++. .++.++|+.++ +++|. ++|++.++++ +++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 345799999999997654 45566788854 99998 7788766532 34444 4555433 2
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC-CCCcccCH
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN-PGGKERTK 322 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~ 322 (353)
++.+ |+|++.++||+++|. .++|++++++|||||++++.+..... .. .. .+......... .....++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~----~~-~~--~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS----GW-DK--LWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS----HH-HH--HHHHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCCc----cH-HH--HHHHHHHhccCCCcccCCCH
Confidence 2333 999999999999875 58999999999999999999754211 00 00 01111000000 01235689
Q ss_pred HHHHHHHHhcCCceeeE
Q 018576 323 HEFMTLATGAGFSGIRS 339 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~ 339 (353)
++|.++|+++||+.+..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998763
No 79
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.58 E-value=1e-14 Score=128.09 Aligned_cols=132 Identities=8% Similarity=-0.082 Sum_probs=102.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------------------CCCeeEEeCCCCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------------------HPHIEHVAGDMFQ 244 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~ 244 (353)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 45689999999999999999987 569999999 777776632 2579999999998
Q ss_pred -CCC--CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 245 -SVP--KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 245 -~~p--~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
+.+ .. |+|++..+||++++++..+++++++++|||||+++++....+... .. . .....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~~------g-~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------HA------G-PPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------CC------C-SSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------CC------C-CCCCC
Confidence 543 33 999999999999887788999999999999999987766543210 00 0 01125
Q ss_pred CHHHHHHHHHhcCCceeeEee
Q 018576 321 TKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+.+++.++|+. +|+++....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 78999999987 698876654
No 80
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.6e-15 Score=133.79 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=101.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCC-CCCC------C--
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQ-SVPK------G-- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~p~------~-- 249 (353)
.++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ .++++++++|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 778877754 4689999999987 5544 4
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh-CCCCcc--cCHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ-NPGGKE--RTKHEFM 326 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~--~t~~~~~ 326 (353)
|+|++..++|++ + ..++|++++++|+|||+|++.+...+.....+. ....+.-..... ..+... ...+.+.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~p~~~~~~ 188 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYPE---FDDLMIEVPYGKQGLGPYWEQPGRSRLR 188 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGG---GTTHHHHHHHCTTTTGGGSCTTHHHHHH
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcHH---HHHHHHHhccCcccccchhhchhhHHHH
Confidence 999999999998 3 579999999999999999996654322111110 111111111000 001111 3456678
Q ss_pred HHHHhcCCc
Q 018576 327 TLATGAGFS 335 (353)
Q Consensus 327 ~ll~~aGf~ 335 (353)
++++++||.
T Consensus 189 ~~l~~~gfp 197 (299)
T 3g5t_A 189 NMLKDSHLD 197 (299)
T ss_dssp TTTTTCCCC
T ss_pred HhhhccCCC
Confidence 999999994
No 81
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.57 E-value=4.4e-15 Score=133.43 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=84.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCC-C---CCCC--c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQ-S---VPKG--D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~-~---~p~~--D 250 (353)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++.+..+|+.+ + ++.+ |
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 445789999999999999999998 449999999 7788777531 578899999887 5 4544 9
Q ss_pred EEEec-cccccCCc-----hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 251 AIFLK-WILHDWDD-----EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 251 ~i~~~-~~Lh~~~~-----~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+|++. +++|++++ ++..++|++++++|+|||++++..+.
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99998 99999988 66789999999999999999988753
No 82
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.55 E-value=5.8e-15 Score=132.76 Aligned_cols=153 Identities=12% Similarity=0.007 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CC-CCC--cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SV-PKG--DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~-p~~--D~i~~~~ 256 (353)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56789999999999999998876 5569999999 7777766542 468999999987 65 343 9999999
Q ss_pred cccc--CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCC--------CCccc----------cc-cccccchhhhhhC-
Q 018576 257 ILHD--WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVP--------NTSIE----------SK-SNSHIDVLMMTQN- 314 (353)
Q Consensus 257 ~Lh~--~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~--------~~~~~----------~~-~~~~~~~~~~~~~- 314 (353)
++|+ .+.++..++|++++++|+|||++++..+...... ..... .. ......+......
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9998 5566788999999999999999999876432100 00000 00 0000000000000
Q ss_pred -CCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 315 -PGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 315 -~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.....++.++|.++|+++||+++++...
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0123468999999999999999988664
No 83
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.53 E-value=1.1e-14 Score=128.61 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C------------------------------
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P------------------------------ 233 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------ 233 (353)
.++.+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999999888765 58999999 6777766431 1
Q ss_pred -Ce-eEEeCCCCC--CCCC---C--cEEEeccccccCCc--hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccc
Q 018576 234 -HI-EHVAGDMFQ--SVPK---G--DAIFLKWILHDWDD--EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS 302 (353)
Q Consensus 234 -rv-~~~~~d~~~--~~p~---~--D~i~~~~~Lh~~~~--~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~ 302 (353)
++ +++.+|+.+ +.+. + |+|++..+||+++. ++..++|++++++|+|||+|++.+...... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------~ 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY--------Y 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------E
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce--------E
Confidence 17 899999987 2233 3 99999999995432 357899999999999999999998543210 0
Q ss_pred ccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 303 NSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
...+.. . .....+.++|.++|+++||+++++....
T Consensus 206 -~~~~~~----~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIGEQK----F-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EETTEE----E-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcCCcc----c-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 0 1224578999999999999998877653
No 84
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.53 E-value=1.2e-14 Score=137.10 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=108.3
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCC-----C-CCCC-
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMF-----Q-SVPK- 248 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~-----~-~~p~- 248 (353)
....+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+......+. . +++.
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3445666666 667789999999999999999986 459999999 7788888765 3333332221 1 2222
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
. |+|++.++||++++ ...+|++++++|+|||++++..+..... .....+.... ......++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------~~~~~~~~~~-~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDI---------VAKTSFDQIF-DEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHH---------HHHTCGGGCS-TTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHh---------hhhcchhhhh-hhhhhcCCHHHHHH
Confidence 3 99999999999975 5799999999999999999976543210 0000000000 12345679999999
Q ss_pred HHHhcCCceeeEeeeC
Q 018576 328 LATGAGFSGIRSDLVT 343 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~ 343 (353)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999888765
No 85
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.53 E-value=7.9e-14 Score=122.19 Aligned_cols=141 Identities=19% Similarity=0.240 Sum_probs=101.8
Q ss_pred CCCeEEEEcCCc--hHHHHHHHH-HCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---C--C---CC-c
Q 018576 190 NIKQLVDVGGNL--GVTLQAITS-KYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---V--P---KG-D 250 (353)
Q Consensus 190 ~~~~vLDvG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~--p---~~-D 250 (353)
+..+|||||||+ +.++..+++ ..|+.+++++|. |.|++.++++ .+++++++|+.++ + | .. |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457999999997 445555554 579999999999 8899988752 3699999999872 1 1 11 3
Q ss_pred -----EEEeccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 251 -----AIFLKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 251 -----~i~~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
+|+++.+||++++.+ ...+|++++++|+|||+|++.+.+.+..+. ......+..... ......||.++
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~-g~p~~~rs~~e 231 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAAR-NMPMRLRTHAE 231 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHT-TCCCCCCCHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhc-CCCCccCCHHH
Confidence 789999999999866 579999999999999999999987543210 011111211111 11235689999
Q ss_pred HHHHHHhcCCceee
Q 018576 325 FMTLATGAGFSGIR 338 (353)
Q Consensus 325 ~~~ll~~aGf~~v~ 338 (353)
+.++|. ||+.++
T Consensus 232 i~~~f~--Glelve 243 (277)
T 3giw_A 232 AEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTT--TSEECT
T ss_pred HHHHhC--CCcccC
Confidence 999994 998654
No 86
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.52 E-value=3.1e-13 Score=118.53 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=84.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~ 251 (353)
.++.... ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 4444443 455689999999999999999986 569999999 7788777642 469999999987 55555 99
Q ss_pred EEec-cccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 252 IFLK-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 252 i~~~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|++. ..+|+++.++..++|++++++|+|||.+++..+
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 9986 456777777788999999999999999987543
No 87
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.52 E-value=5.8e-15 Score=130.68 Aligned_cols=140 Identities=11% Similarity=-0.039 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------------------------------
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------------------------------- 232 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------------------- 232 (353)
..++.+|||||||+|.++..++... ..+++++|. +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3456899999999998766655442 127999999 7778765431
Q ss_pred -CCee-EEeCCCCCC--CC---C-C-cEEEeccccccCC--chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc
Q 018576 233 -PHIE-HVAGDMFQS--VP---K-G-DAIFLKWILHDWD--DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301 (353)
Q Consensus 233 -~rv~-~~~~d~~~~--~p---~-~-D~i~~~~~Lh~~~--~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 301 (353)
.++. ++.+|+.+. ++ . . |+|+++++||+.. .++..++|++++++|||||+|++.+......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------- 203 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 203 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------
Confidence 1133 889998873 22 2 2 9999999999853 2456799999999999999999997643210
Q ss_pred cccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 302 SNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
. ...-.. . ....++.++|.++|+++||+++++...
T Consensus 204 ~--~~g~~~---~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 Y--MVGKRE---F-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp E--EETTEE---E-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--eeCCeE---e-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 000000 0 112358999999999999999887654
No 88
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.52 E-value=3.4e-13 Score=111.19 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCC--cEEEeccccccCCch--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKG--DAIFLKWILHDWDDE-- 264 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~~~~~-- 264 (353)
++.+|||||||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+.+ |+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45699999999999999999987 9999999 777777 567999999998866643 999999998865543
Q ss_pred -----HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 265 -----HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 265 -----~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
....+++++.+.+ |||++++.+... ...+++.++++++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 3457899999999 999999977421 13567889999999998877
Q ss_pred eeeC
Q 018576 340 DLVT 343 (353)
Q Consensus 340 ~~~~ 343 (353)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 6553
No 89
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.52 E-value=7.6e-15 Score=131.70 Aligned_cols=138 Identities=11% Similarity=0.032 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C-------------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P------------------------------- 233 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------- 233 (353)
++.+|||||||+|.+. .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999943 3444445569999999 7787755431 0
Q ss_pred -CeeEEeCCCCC--C-----CCCC--cEEEeccccccCCch--HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc
Q 018576 234 -HIEHVAGDMFQ--S-----VPKG--DAIFLKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301 (353)
Q Consensus 234 -rv~~~~~d~~~--~-----~p~~--D~i~~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 301 (353)
.++++.+|+.+ + ++.+ |+|++.++||+++.. +..++|++++++|||||+|++.+.....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~--------- 220 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES--------- 220 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC---------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc---------
Confidence 14566668876 2 2233 999999999985533 5789999999999999999998754221
Q ss_pred cccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 302 SNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
+....+.. . ....++.++|.++|+++||+++++...
T Consensus 221 ~~~~~~~~----~-~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 221 WYLAGEAR----L-TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp EEEETTEE----E-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eEEcCCee----e-eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00000000 0 122468999999999999999877654
No 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.52 E-value=5.8e-14 Score=118.95 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=99.4
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEeccccccCCc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~ 263 (353)
+|||||||+|.++..+++. +.+++++|. +.+++.+++. .++.++.+|+.+ +++.+ |+|++.. ++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCH
Confidence 9999999999999999986 569999999 7778777653 379999999987 66543 9999853 34566
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
++..++|++++++|+|||++++.+....... ...... ......++.+++.++|+ ||+++++...
T Consensus 108 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------YNTGGP------KDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------GTSCCS------SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccc-------CCCCCC------CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 6788999999999999999999887643310 000000 00123578999999998 9999876554
No 91
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.51 E-value=8.9e-14 Score=119.32 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=96.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhh----CCC------CCCeeEEeCCCCC-CCCCC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEH----APL------HPHIEHVAGDMFQ-SVPKG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~rv~~~~~d~~~-~~p~~-D~i~~ 254 (353)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 55678999999999999999999999999999999 665553 222 2589999999988 65544 66653
Q ss_pred cc---ccc--cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 255 KW---ILH--DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 255 ~~---~Lh--~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
.. .+| ++++. ..+|++++++|||||++++........... ...... .........+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV---------PEVGEH--PEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC---------GGGTTC--CCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc---------cccccC--CccchHHHHHHHHHHH
Confidence 22 221 33322 589999999999999999954322111000 000000 0011122345688899
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||++.++....
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999998876653
No 92
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.51 E-value=5e-14 Score=129.50 Aligned_cols=113 Identities=14% Similarity=0.244 Sum_probs=91.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------------CCCeeEEeCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------------HPHIEHVAGD 241 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d 241 (353)
+..+++.+. ..++.+|||||||+|..+..++..++..+++|+|+ +.+++.|++ .++|+++++|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 345666666 77889999999999999999999888777999999 556655542 2689999999
Q ss_pred CCC-CCC----CCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 018576 242 MFQ-SVP----KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVP 294 (353)
Q Consensus 242 ~~~-~~p----~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~ 294 (353)
+.+ +++ ..|+|+++++++. ++..+.|++++++|||||+|++.|.+.+.+.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAFG---PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTCC---HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEcccccC---chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 553 3499999887742 5567889999999999999999999887654
No 93
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.51 E-value=6.7e-15 Score=126.11 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=83.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCCCCCC--cEEEecccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQSVPKG--DAIFLKWILHD 260 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~ 260 (353)
..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+..+.+ |+|++.+++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999885 48999999 777776654 367999999998833443 99999999999
Q ss_pred CCc-hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 261 WDD-EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 261 ~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+++ +...++|++++++|+|||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 45668999999999999999997764
No 94
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.51 E-value=6.2e-14 Score=125.48 Aligned_cols=140 Identities=13% Similarity=0.126 Sum_probs=106.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~ 251 (353)
.+++.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 346789999999999999999998 569999999 7777766542 279999999987 44444 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
|++..++|+++++....+|++++++|+|||+++++.....+....+ ......++.+++.++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999988889999999999999999988777654321110 001234567788888854
Q ss_pred cCCceeeEe
Q 018576 332 AGFSGIRSD 340 (353)
Q Consensus 332 aGf~~v~~~ 340 (353)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8877664
No 95
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.50 E-value=2.7e-13 Score=115.10 Aligned_cols=120 Identities=10% Similarity=0.161 Sum_probs=97.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC--CC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP--KG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p--~~- 249 (353)
.++..+. ..++.+|||||||+|.++..+++..|..+++++|. +.+++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4455555 66778999999999999999999999999999999 7788777652 689999999976433 23
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++...++ ...+++++++++|+|||++++..... .+.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHHH
Confidence 9999998876 24689999999999999999865421 1355788899
Q ss_pred HhcCC
Q 018576 330 TGAGF 334 (353)
Q Consensus 330 ~~aGf 334 (353)
+++||
T Consensus 156 ~~~g~ 160 (204)
T 3e05_A 156 EDHGY 160 (204)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 99998
No 96
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.50 E-value=7.4e-14 Score=118.63 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=105.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
.+..+|||||||+|.++..+++ .+..+++++|. +.+++.++++ .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999876 57779999999 7777777652 34999999998754444 99999988764
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
...++++++++|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999765321 35678899999999999998
Q ss_pred eeCCceEEEEEeC
Q 018576 341 LVTGNFWVMEFYK 353 (353)
Q Consensus 341 ~~~~~~~vi~~~~ 353 (353)
......+++.-.|
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8888888776543
No 97
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.49 E-value=2.6e-13 Score=117.55 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=99.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhh----CCCCCCeeEEeCCCCCC-----CCCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEH----APLHPHIEHVAGDMFQS-----VPKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~rv~~~~~d~~~~-----~p~~-D~i~~~~ 256 (353)
+.+..+|||||||+|.++..+++.+|..+++++|. +.+++. ++..+++.++.+|+..+ .+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999998889999998 666643 44457899999998762 2233 9988
Q ss_pred ccccCCch-HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 257 ILHDWDDE-HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 257 ~Lh~~~~~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
|++++. ....+|+++++.|+|||++++. ......... .. ......+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~---------~~---------~~~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVT---------KD---------PKEIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSS---------SC---------HHHHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCC---------CC---------HHHhhHHHHH-HHHHCCCE
Confidence 444433 3467899999999999999997 221111000 00 0011246777 89999999
Q ss_pred eeeEeeeCCc---eEEEEEe
Q 018576 336 GIRSDLVTGN---FWVMEFY 352 (353)
Q Consensus 336 ~v~~~~~~~~---~~vi~~~ 352 (353)
.+++.+.... +.++.++
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEE
Confidence 9988877543 5555544
No 98
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.49 E-value=7.4e-14 Score=120.52 Aligned_cols=145 Identities=10% Similarity=0.048 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-H-HHhhC---CCC------CCeeEEeCCCCCCCCC--CcEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-H-VIEHA---PLH------PHIEHVAGDMFQSVPK--GDAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a---~~~------~rv~~~~~d~~~~~p~--~D~i~~~ 255 (353)
.++.+|||||||+|.++..+++..|+.+++++|++ + +++.| +++ ++++++.+|+.+ +|. .|.|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence 45679999999999999999999999999999994 4 44443 543 579999999876 233 2555555
Q ss_pred cccccCCch------HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 256 WILHDWDDE------HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 256 ~~Lh~~~~~------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
.+.+.|+.. ....+|++++++|||||++++............ . .... .. .+.......+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~---~--~~~~---~~-~~~~~~~~~~el~~~l 172 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAE---I--KKRG---LP-LLSKAYFLSEQYKAEL 172 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhch---h--hhcC---CC-CCChhhcchHHHHHHH
Confidence 444434321 114689999999999999999544322210000 0 0000 00 0011111223599999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||++..+...+
T Consensus 173 ~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 173 SNSGFRIDDVKELD 186 (225)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHcCCCeeeeeecC
Confidence 99999988876554
No 99
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.47 E-value=6e-13 Score=118.51 Aligned_cols=142 Identities=14% Similarity=0.120 Sum_probs=106.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~- 249 (353)
..+++.++ .+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.++.+. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34444443 3467999999999999999999999999999999 7777776643 4799999999886543 3
Q ss_pred cEEEeccc-------------cccCCc----------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc
Q 018576 250 DAIFLKWI-------------LHDWDD----------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306 (353)
Q Consensus 250 D~i~~~~~-------------Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (353)
|+|+++.. +++.+. ....++++++.+.|+|||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 99999843 333221 3457899999999999999998521
Q ss_pred chhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee-eCCceEEEEEe
Q 018576 307 DVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL-VTGNFWVMEFY 352 (353)
Q Consensus 307 ~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~ 352 (353)
..+.+++.++++++||+.+++.. ..+...++.++
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 02367889999999999887765 44555555554
No 100
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.47 E-value=1.1e-13 Score=117.96 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=98.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
.++..+. .+..+|||||||+|.++..+ +. +++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 26789999999999998887 45 8999999 7788777654 689999999987 66654 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+..++|++++ ..++|++++++|+|||++++.++..... . ..........-.........+|.++++++|+ |
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 101 LFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSP----W-AALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSH----H-HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCc----H-HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999875 4699999999999999999988753221 0 0000000000000000234579999999998 7
No 101
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.46 E-value=1.9e-13 Score=120.98 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCchH----HHHHHHHHCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 018576 190 NIKQLVDVGGNLGV----TLQAITSKYP----YIKGINFDQ-PHVIEHAPLH---------------------------- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 232 (353)
+..+|+|+|||||. .++.+++.+| +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 7788776532
Q ss_pred ---------CCeeEEeCCCCC-CCC--CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 233 ---------PHIEHVAGDMFQ-SVP--KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 233 ---------~rv~~~~~d~~~-~~p--~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+|.|..+|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 268999999998 565 33 999999999999988788999999999999999987
No 102
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.46 E-value=1.6e-13 Score=123.69 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----C-------CeeEEeCCCCC---------CCC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----P-------HIEHVAGDMFQ---------SVP 247 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-------rv~~~~~d~~~---------~~p 247 (353)
.+.+|||||||+|..+..+++. ...+++|+|+ +.+++.|+++ . +++|.+.|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999877766654 3468999999 7889888753 1 25677887732 234
Q ss_pred CC--cEEEeccccccC-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-c-----------ccccccccc----ch
Q 018576 248 KG--DAIFLKWILHDW-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT-S-----------IESKSNSHI----DV 308 (353)
Q Consensus 248 ~~--D~i~~~~~Lh~~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-~-----------~~~~~~~~~----~~ 308 (353)
.+ |+|++.+++|+. ..++..++|++++++|||||++++..+....-... . ....+.... +.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 999999999974 44456799999999999999999887632110000 0 000000000 00
Q ss_pred hhhhhCCCC-------cccCHHHHHHHHHhcCCceeeEeee
Q 018576 309 LMMTQNPGG-------KERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 309 ~~~~~~~~g-------~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
. ....+.+ ...+.+++.++++++||+.+.....
T Consensus 207 ~-~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 I-VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp E-EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred c-ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0 0000111 2357799999999999999887653
No 103
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.45 E-value=1.2e-14 Score=126.40 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC---CCCCC--cEEEe---
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ---SVPKG--DAIFL--- 254 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~i~~--- 254 (353)
.++.+|||||||+|..+..+++..|. +++++|+ +.+++.|++. .+++++.+|... +++.+ |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45789999999999999999887764 8999999 8888887652 468888888754 34543 77653
Q ss_pred --ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhc
Q 018576 255 --KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGA 332 (353)
Q Consensus 255 --~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 332 (353)
...++++ .+...++++++++|||||+|++.+....... .....+ .-.....+.+...|.++
T Consensus 138 ~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchhh-------hhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 5555554 3457999999999999999988654321100 000000 01112345677788899
Q ss_pred CCceeeE
Q 018576 333 GFSGIRS 339 (353)
Q Consensus 333 Gf~~v~~ 339 (353)
||+...+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9987544
No 104
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.45 E-value=5.8e-13 Score=111.53 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=108.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C--CeeEEeCCCCCCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P--HIEHVAGDMFQSVPK- 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--rv~~~~~d~~~~~p~- 248 (353)
+.+++.+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. + +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34556565 567789999999999999999988 779999998 7777766542 3 499999999885544
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
. |+|++...+|+ ..+....+++++++.|+|||++++...... ...++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHH
Confidence 3 99999988874 345677999999999999999999875321 1235667
Q ss_pred HHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 328 LATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.+++. |..+++.....+..++..+|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77777 67777777777777777665
No 105
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.45 E-value=2.7e-13 Score=112.22 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=81.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC---
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK--- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--- 248 (353)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|. +.+++.+++. +++ ++.+|..+.++.
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3445555 56678999999999999999999999999999999 6677776542 378 888988764442
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
. |+|++..++|+ ..++++++++|+|||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 3 99999999986 4789999999999999998764
No 106
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.44 E-value=3.6e-13 Score=122.15 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------------CCeeEEeCCCCC-C----CC--C
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------------PHIEHVAGDMFQ-S----VP--K 248 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~rv~~~~~d~~~-~----~p--~ 248 (353)
++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++++|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5689999999999999999884 6779999999 7777766542 368999999987 4 42 2
Q ss_pred -C-cEEEeccccccC--CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 249 -G-DAIFLKWILHDW--DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~--~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
. |+|++.+++|+. +.++...+|++++++|+|||++++..+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3 999999999986 3355779999999999999999998763
No 107
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.43 E-value=6.8e-13 Score=130.74 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=88.6
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC------------CCCeeEEeCCCCC-C
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL------------HPHIEHVAGDMFQ-S 245 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~rv~~~~~d~~~-~ 245 (353)
+++.+. ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ .++++++.+|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 334333 3467899999999999999999998 5679999999 778877754 2579999999988 5
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
.+.+ |+|++..++|+++++....++++++++|+|| .++|..+.
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 5543 9999999999999888889999999999999 77777654
No 108
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.43 E-value=7.7e-14 Score=119.01 Aligned_cols=143 Identities=13% Similarity=0.023 Sum_probs=92.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCC-----
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVP----- 247 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p----- 247 (353)
..+++.+....++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34555554225678999999999999999999999999999999 7788888764 168888888877444
Q ss_pred -CC-cEEEeccccccC------CchHH------------------HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc
Q 018576 248 -KG-DAIFLKWILHDW------DDEHC------------------LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301 (353)
Q Consensus 248 -~~-D~i~~~~~Lh~~------~~~~~------------------~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 301 (353)
.. |+|+++..++.. +.... ..++++++++|+|||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 23 999996554432 22211 688999999999999966655321
Q ss_pred cccccchhhhhhCCCCcccCHHHHHHHHH--hcCCceeeEeeeCC-ceEEEE
Q 018576 302 SNSHIDVLMMTQNPGGKERTKHEFMTLAT--GAGFSGIRSDLVTG-NFWVME 350 (353)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~--~aGf~~v~~~~~~~-~~~vi~ 350 (353)
...+++.++++ +.||..+++..... ...++.
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~ 201 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIA 201 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEE
Confidence 12456778888 89998887776543 334443
No 109
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.42 E-value=2.5e-13 Score=119.15 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=82.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-C------CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-S------VPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~------~p~~ 249 (353)
...++..++ ..++.+|||||||+|.++..++++ ..+++++|. +.+++.++++..-.++..++.+ + .+..
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 345666665 677889999999999999999987 468999999 7788877653111122223222 1 1223
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|+++.++...++++++++| |||++++....
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 9999999999999888899999999999 99999987653
No 110
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.41 E-value=7.5e-14 Score=121.40 Aligned_cols=100 Identities=11% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC---CCCCC--cEEEe-cc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ---SVPKG--DAIFL-KW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~i~~-~~ 256 (353)
.+..+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999966443 48999999 7787776542 569999999865 35544 99999 55
Q ss_pred c--cccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 257 I--LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 257 ~--Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
. .+.+.......++++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 5 33444445568899999999999999998764
No 111
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.39 E-value=2.1e-12 Score=110.44 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC--cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG--DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~--D~i~~~~~ 257 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + ++.+ |+|++.+.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457999999999999999999999999999999 7777776542 689999999987 4 5543 99998866
Q ss_pred cccCCch------HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 258 LHDWDDE------HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 258 Lh~~~~~------~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+..... ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 5322111 12579999999999999998854
No 112
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.38 E-value=3.5e-12 Score=108.80 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=75.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH----HHhhCCCCCCeeEEeCCCCCC-----CCCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH----VIEHAPLHPHIEHVAGDMFQS-----VPKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~-----~p~~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..+++..++.+++++|. +. +.+.+++..++.++.+|+..+ +++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988779999999 54 345555556899999998763 2333 999987
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+.+ ..+...++++++++|||||++++.-
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 322 2334567999999999999999984
No 113
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.37 E-value=9.5e-13 Score=113.16 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=96.3
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhC----CCCCCeeEEeCCCCCC--CC--C-C-cE
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHA----PLHPHIEHVAGDMFQS--VP--K-G-DA 251 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~~--~p--~-~-D~ 251 (353)
.++ ++++.+|||+|||+|.++..+++.. |+-+++++|. +.+++.+ ++..++..+.+|...+ .+ . . |+
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 344 6788999999999999999999975 8899999998 7776544 4457899999988762 22 2 2 88
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
|++....| .+...+++++++.|||||+++|.......+ .. . ... ...++-.+.|++
T Consensus 151 Vf~d~~~~----~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~----~-p~~-~~~~~ev~~L~~ 206 (233)
T 4df3_A 151 LYADVAQP----EQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VT----T-EPS-EVYKREIKTLMD 206 (233)
T ss_dssp EEECCCCT----THHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HH----T-CCC-HHHHHHHHHHHH
T ss_pred EEEeccCC----hhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CC----C-ChH-HHHHHHHHHHHH
Confidence 87643322 335689999999999999999875432111 00 0 000 112334567889
Q ss_pred cCCceeeEeeeCC
Q 018576 332 AGFSGIRSDLVTG 344 (353)
Q Consensus 332 aGf~~v~~~~~~~ 344 (353)
+||+.++...+.+
T Consensus 207 ~GF~l~e~i~L~p 219 (233)
T 4df3_A 207 GGLEIKDVVHLDP 219 (233)
T ss_dssp TTCCEEEEEECTT
T ss_pred CCCEEEEEEccCC
Confidence 9999998877643
No 114
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.37 E-value=8.1e-12 Score=106.01 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=93.2
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C-CeeEEeCCCCCCCC---CC
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P-HIEHVAGDMFQSVP---KG 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~~~p---~~ 249 (353)
++..+. ..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++. + +++++.+|+.+..+ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 444455 667789999999999999999998 789999999 7788776642 3 89999999987332 23
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++...+ + .. ++++++++|+|||++++..... .+..++.+++
T Consensus 124 D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l 167 (204)
T 3njr_A 124 EAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQLH 167 (204)
T ss_dssp SEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHHH
Confidence 999987754 1 24 8999999999999999865421 1245677889
Q ss_pred HhcCCceeeEe
Q 018576 330 TGAGFSGIRSD 340 (353)
Q Consensus 330 ~~aGf~~v~~~ 340 (353)
++.||++.++.
T Consensus 168 ~~~g~~i~~i~ 178 (204)
T 3njr_A 168 ARHGGQLLRID 178 (204)
T ss_dssp HHHCSEEEEEE
T ss_pred HhCCCcEEEEE
Confidence 99998876653
No 115
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.36 E-value=4.4e-13 Score=114.33 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~ 260 (353)
.+..+|||||||+|.++..+++..+. +++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45689999999999999999998655 8999998 677766654 2689999999987 66644 99999999876
Q ss_pred CC-------------chHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 261 WD-------------DEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 261 ~~-------------~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+. .....++|++++++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 54 3456799999999999999999988653
No 116
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.34 E-value=9.4e-12 Score=107.32 Aligned_cols=140 Identities=14% Similarity=0.074 Sum_probs=96.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHH----hhCCCCCCeeEEeCCCCCC-----CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVI----EHAPLHPHIEHVAGDMFQS-----VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~----~~a~~~~rv~~~~~d~~~~-----~p~~-D~i~~~ 255 (353)
..+..+|||+|||+|.++..+++.+ |..+++++|. +.++ +.+++.++++++.+|+.++ .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999986 6689999998 5444 3444457899999999872 2334 999976
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.. .......++++++++|+|||++++. ......... . .....+.+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~---------~---------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVT---------K---------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTT---------S---------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCC---------C---------ChhhhhHHHHHHH-Hhh-ce
Confidence 44 1233446699999999999999998 321110000 0 0012235677776 777 99
Q ss_pred eeeEeeeCCc---eEEEEEe
Q 018576 336 GIRSDLVTGN---FWVMEFY 352 (353)
Q Consensus 336 ~v~~~~~~~~---~~vi~~~ 352 (353)
.++......+ ...+.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eeeEeccCcccCCCEEEEEE
Confidence 9988877544 5555544
No 117
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.34 E-value=8.8e-13 Score=117.36 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=93.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~- 249 (353)
.++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.++++.+
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 667789999999999999999998 78899999999 777765543 257999999998866653
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++ ++++. .++|+++.++|+|||++++...... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99998 33433 4889999999999999999774210 13456677
Q ss_pred HHhcCCceeeEee
Q 018576 329 ATGAGFSGIRSDL 341 (353)
Q Consensus 329 l~~aGf~~v~~~~ 341 (353)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7788888776654
No 118
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.34 E-value=5.5e-13 Score=115.10 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCC--CCC-CC--cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQ--SVP-KG--DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~--~~p-~~--D~i~~~~~Lh~~ 261 (353)
.++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .+ |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 45689999999999999999998 579999999 778887765 4789999999965 444 43 9999871
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+...+|++++++|+|||+++.. +...+.+++.++++++||+.+++..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 1347799999999999999900 0012345788899999998877654
Q ss_pred e
Q 018576 342 V 342 (353)
Q Consensus 342 ~ 342 (353)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
No 119
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.34 E-value=1.8e-12 Score=113.89 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=97.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---C--CeeEEeCCCCCCCCC-C-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---P--HIEHVAGDMFQSVPK-G-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~ 260 (353)
.++.+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ . .+++..+|+.+.++. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4568999999999999999988755 9999999 7777766542 1 288999998765543 3 9999875544
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
....+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 356899999999999999999765321 25688999999999999988
Q ss_pred eeCCceEE
Q 018576 341 LVTGNFWV 348 (353)
Q Consensus 341 ~~~~~~~v 348 (353)
..+...++
T Consensus 243 ~~~~W~~l 250 (254)
T 2nxc_A 243 AEGEWVLL 250 (254)
T ss_dssp EETTEEEE
T ss_pred ccCCeEEE
Confidence 77655543
No 120
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.34 E-value=9.4e-12 Score=110.43 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=97.5
Q ss_pred HHHHHhccccC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhh-CCCCCCeeEEe-CCCCC----CCCCC-
Q 018576 179 SNILESYKGFA-NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEH-APLHPHIEHVA-GDMFQ----SVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~rv~~~~-~d~~~----~~p~~- 249 (353)
..++..+. .. .+.+|||||||||.++..+++. +..+++++|+ +.|++. +++.+++.... .|+.. .+|..
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 45566665 43 4679999999999999998886 5569999999 677766 34456665443 24322 23433
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc-cccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++ ..+|++++++|+|||+++++- .|+..... .........+.. ...++.+++.+
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~~ 217 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVTA 217 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHHH
Confidence 999998888764 578999999999999999862 22210000 000000011111 11246789999
Q ss_pred HHHhcCCceeeEeee
Q 018576 328 LATGAGFSGIRSDLV 342 (353)
Q Consensus 328 ll~~aGf~~v~~~~~ 342 (353)
+++++||++..+...
T Consensus 218 ~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHTTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEEC
Confidence 999999998877654
No 121
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=111.25 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=92.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hH----HHhhCCCCCCeeEEeCCCCCC--CC---CC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PH----VIEHAPLHPHIEHVAGDMFQS--VP---KG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~--~p---~~-D~i~~~ 255 (353)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +. +++.+++.++++++.+|+.++ ++ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999987 7789999998 44 345555557899999999872 22 23 999985
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.. ..+....++++++++|+|||++++.-....... ..... .+...+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~----------~~~~~---------~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDS----------TASAE---------AVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCS----------SSCHH---------HHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEccccccc----------CCCHH---------HHHHHH-HHHHHHCCCc
Confidence 44 233456779999999999999999422110000 00000 001123 5889999999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
.+++.+..
T Consensus 211 ~~~~~~~~ 218 (233)
T 2ipx_A 211 PQEQLTLE 218 (233)
T ss_dssp EEEEEECT
T ss_pred eEEEEecC
Confidence 98876654
No 122
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.33 E-value=6.3e-12 Score=108.56 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=93.7
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCC--CCCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMF--QSVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~--~~~p~~--D~i~~~~ 256 (353)
..++.+|||+||| +|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+. .+++.+ |+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3567899999999 999999999987 789999999 7778777642 27999999964 345543 9999987
Q ss_pred ccccCCchH-----------------HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc
Q 018576 257 ILHDWDDEH-----------------CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319 (353)
Q Consensus 257 ~Lh~~~~~~-----------------~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (353)
.++..++.. ..++++++.+.|+|||++++..... .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------------~ 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK----------------------------E 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC----------------------------H
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc----------------------------H
Confidence 776543321 3689999999999999999864310 0
Q ss_pred cCHHHHHHHHHhcCCceeeEeee
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
...+++.+++++.||+...+...
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCceEEEEec
Confidence 12467888999999976665443
No 123
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.33 E-value=3.1e-12 Score=113.37 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=78.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~L 258 (353)
..++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++. ++++++++|+.+ +|. . |+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~~ 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAALA 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTTC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCCc
Confidence 67889999999999988776667778999999999 8888888753 689999999986 233 3 999986542
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++..+++++++++|||||+|++.+.
T Consensus 199 -----~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 199 -----EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp -----SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -----cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 3356999999999999999999773
No 124
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.32 E-value=2.1e-12 Score=107.68 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=75.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC--CCCC-C-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ--SVPK-G-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p~-~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..+++. ..+++++|. +.+++.++++ ++++++..|+.. ..+. . |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 356789999999999999999988 789999999 7788877653 679999977655 1333 3 9998773
Q ss_pred -ccccC------CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 257 -ILHDW------DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 257 -~Lh~~------~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
.++.- ..+....+|++++++|+|||++++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 33220 1245568899999999999999998653
No 125
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.32 E-value=5e-12 Score=111.01 Aligned_cols=127 Identities=11% Similarity=0.095 Sum_probs=99.0
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
..++..+. ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+.++..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 677889999999999999999999 78999999999 7788777653 45999999998866654
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++. .++. ..+++++.++|+|||++++..+... ..+++.+
T Consensus 162 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 205 (255)
T 3mb5_A 162 NVDHVILD-----LPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHE 205 (255)
T ss_dssp SEEEEEEC-----SSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred CcCEEEEC-----CCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHH
Confidence 999873 3333 4789999999999999998754210 1346778
Q ss_pred HHHhcC--CceeeEeee
Q 018576 328 LATGAG--FSGIRSDLV 342 (353)
Q Consensus 328 ll~~aG--f~~v~~~~~ 342 (353)
++++.| |..+++...
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 888999 988776543
No 126
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.32 E-value=3.2e-12 Score=118.50 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=86.7
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCCCCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~~p~~ 249 (353)
.+++.++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .++++..+|+.++++.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44558999999999999999999999999999999 7778777653 25888999999876654
Q ss_pred --cEEEecccccc---CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 --DAIFLKWILHD---WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 --D~i~~~~~Lh~---~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|+++..+|. ..+....+++++++++|+|||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999999985 3344556899999999999999999753
No 127
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.31 E-value=2.6e-12 Score=108.22 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=80.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C-CC-CC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S-VP-KG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~-~p-~~-D~i~~ 254 (353)
..++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++. ++++++.+|+.+ + .. +. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999987 6789999999 7788777653 579999999876 2 33 33 99998
Q ss_pred cccccc-------CCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 255 KWILHD-------WDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 255 ~~~Lh~-------~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
...+.. ...+...++++++.++|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 875511 11234567999999999999999998754
No 128
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.31 E-value=1.1e-11 Score=104.75 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=80.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC--CCeEEEecchHHHhhCCCCCCeeEEeCCCCC-C---------
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP--YIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-S--------- 245 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------- 245 (353)
..++.+.+.-+.+..+|||||||+|.++..+++.+| +.+++++|++++ ...++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 445566655245678999999999999999999998 689999999553 123679999999987 4
Q ss_pred ----------------CCCC--cEEEeccccccCC----chH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018576 246 ----------------VPKG--DAIFLKWILHDWD----DEH-----CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 246 ----------------~p~~--D~i~~~~~Lh~~~----~~~-----~~~~L~~~~~~L~pgG~l~i~e 287 (353)
++.. |+|++...+|... +.. ..++|++++++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3433 9999988877532 111 1248999999999999998744
No 129
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.31 E-value=4.3e-12 Score=108.49 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-C--CCCC--cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-S--VPKG--DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~--D~i~~~~~ 257 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ + ++.+ |.|++.+.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 777776654 2579999999876 3 5544 98887654
Q ss_pred cccCCchH------HHHHHHHHHHhCCCCCEEEEEe
Q 018576 258 LHDWDDEH------CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 258 Lh~~~~~~------~~~~L~~~~~~L~pgG~l~i~e 287 (353)
........ ...+|++++++|+|||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32211100 2578999999999999999865
No 130
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=4e-11 Score=104.89 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=79.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC---CCCC--C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ---SVPK--G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~--~-D~i 252 (353)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44578999999999999999999998 899999999 7777776542 589999999865 2222 3 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++... ......+|+++.+.|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 88643 3445789999999999999998876654
No 131
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.30 E-value=4.4e-12 Score=105.95 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=92.8
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC--C-
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK--G- 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~- 249 (353)
++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. +++++..+|+.++++. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 444444 6677899999999999999999987 79999998 7777766542 5799999998764442 3
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++|+ ...+++++.++|+|||++++..... .+..++.+++
T Consensus 102 D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~l 147 (192)
T 1l3i_A 102 DIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMECL 147 (192)
T ss_dssp EEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHHH
Confidence 99999988764 3688999999999999999866421 1245678889
Q ss_pred HhcCCce
Q 018576 330 TGAGFSG 336 (353)
Q Consensus 330 ~~aGf~~ 336 (353)
++.||..
T Consensus 148 ~~~g~~~ 154 (192)
T 1l3i_A 148 RDLGFDV 154 (192)
T ss_dssp HHTTCCC
T ss_pred HHCCCce
Confidence 9999943
No 132
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.30 E-value=1.7e-11 Score=105.59 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=90.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHH----HhhCCCCCCeeEEeCCCCCCC-----CCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHV----IEHAPLHPHIEHVAGDMFQSV-----PKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~~-----p~~-D~i~~~ 255 (353)
+.++.+|||+|||+|.++..+++.. |+.+++++|. +.+ ++.++++.++.++.+|+..+. ++. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999999875 6889999999 544 344555578999999987631 223 999887
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
... + .....+++.+++.|||||+|++.......+... ... ...++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~-------------------~~~-e~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK-------------------DPK-EIYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-------C-------------------CSS-SSTTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCC-------------------CHH-HHHHHHHHHHHHCCCE
Confidence 554 2 233345566777999999999984321111000 111 1123455678889999
Q ss_pred eeeEeeeCC
Q 018576 336 GIRSDLVTG 344 (353)
Q Consensus 336 ~v~~~~~~~ 344 (353)
+++...+.+
T Consensus 210 ~~~~~~l~p 218 (232)
T 3id6_C 210 TIQIINLDP 218 (232)
T ss_dssp EEEEEECTT
T ss_pred EEEEeccCC
Confidence 999887743
No 133
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.30 E-value=4.4e-12 Score=114.41 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=94.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC-CC--CC-C-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ-SV--PK-G-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~-~~--p~-~-D~i 252 (353)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 777776553 2689999999876 22 33 3 999
Q ss_pred EeccccccCCchHH--HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
++....+..+.... ..++++++++|+|||.+++..... +. ......++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence 99877765543322 589999999999999999874210 00 0123567889999
Q ss_pred hcCCceeeEeee
Q 018576 331 GAGFSGIRSDLV 342 (353)
Q Consensus 331 ~aGf~~v~~~~~ 342 (353)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998877643
No 134
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.30 E-value=3e-12 Score=111.56 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCC----CC-cEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVP----KG-DAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p----~~-D~i~~~ 255 (353)
.+..+|||||||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.+ .. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999889999999999 7777776542 469999999876 432 33 999987
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.+ .+ ...+++.++++|+|||++++...... ....+++.+.+++.||+
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~---------------------------~~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAASA---------------------------EEELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C---------------------------HHHHHHHHHHHHHTTEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc---------------------------hHHHHHHHHHHHHcCCe
Confidence 63 22 56899999999999999988632100 00134677889999999
Q ss_pred eeeEee
Q 018576 336 GIRSDL 341 (353)
Q Consensus 336 ~v~~~~ 341 (353)
.+++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887654
No 135
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.29 E-value=1.6e-12 Score=111.57 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCC----CCCC--cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQS----VPKG--DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----~p~~--D~i~~~~ 256 (353)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999999 777776653 25799999998662 5554 9998875
Q ss_pred ccccCCchHH------HHHHHHHHHhCCCCCEEEEEee
Q 018576 257 ILHDWDDEHC------LKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~~~~~~~------~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.......... ..++++++++|+|||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 5432222211 2599999999999999998764
No 136
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.29 E-value=1.8e-12 Score=118.98 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=88.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~ 251 (353)
+.+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34556664 34467999999999999999999999999999999 6677776642 34678899988744444 99
Q ss_pred EEeccccccC---CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDW---DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~---~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+++.++|+. ......++|++++++|+|||.++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999862 3455789999999999999999998753
No 137
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.29 E-value=2.5e-13 Score=119.37 Aligned_cols=145 Identities=8% Similarity=-0.027 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC----CCC----CC-cEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ----SVP----KG-DAI 252 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~----~~p----~~-D~i 252 (353)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999999 7788776642 469999998543 444 23 999
Q ss_pred EeccccccCCc-------------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc
Q 018576 253 FLKWILHDWDD-------------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319 (353)
Q Consensus 253 ~~~~~Lh~~~~-------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (353)
+++..+|.... .....++++++++|+|||.+.+++....... .......+ .. ...+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~~l~~~g~--~~-~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL------QLKKRLRW--YS-CMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH------HHGGGBSC--EE-EEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH------hcccceEE--EE-ECCCCh
Confidence 99877665431 0123567889999999999988775432100 00000000 00 012334
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456889999999999998877653
No 138
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.29 E-value=3.7e-12 Score=112.27 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++..+++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999987 568999999 7788777654222388899887 66554 999998876666433
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
..++|++++++|+|||++++....
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 679999999999999999998764
No 139
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.28 E-value=3.1e-12 Score=105.26 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C-CeeEEeCCCCCC-CCCC-cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P-HIEHVAGDMFQS-VPKG-DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~~-~p~~-D~i~~~~~L 258 (353)
..+.+|||||||+|-++..++...|+.+++++|+ +.+++.++++ . ++++ .|.... .+.. |+|++..+|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4578999999999999999999999999999999 7788877653 1 4555 666553 3344 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
|.+ ++ ....+.+++++|+|||.++-.+.-.=..+. ++-.......|++.. ...+.+++
T Consensus 126 HlL-~~-~~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~ 183 (200)
T 3fzg_A 126 PVL-KQ-QDVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILD 183 (200)
T ss_dssp HHH-HH-TTCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEE
T ss_pred Hhh-hh-hHHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeee
Confidence 999 33 456677999999999988876621111110 111223456777777 45667777
Q ss_pred EeeeCCc
Q 018576 339 SDLVTGN 345 (353)
Q Consensus 339 ~~~~~~~ 345 (353)
....++-
T Consensus 184 ~~~~~nE 190 (200)
T 3fzg_A 184 SKVIGNE 190 (200)
T ss_dssp EEEETTE
T ss_pred eeeeCce
Confidence 7666543
No 140
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.28 E-value=3.4e-12 Score=117.39 Aligned_cols=106 Identities=19% Similarity=0.148 Sum_probs=85.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D 250 (353)
.+.+.+. ..++.+|||||||+|.++..+++. +..+++++|.+++++.+++. ++++++.+|+.+ +.++. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555555 556789999999999999998885 56799999996666655432 679999999987 66655 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+|++...++++..+.....+.++++.|+|||++++..
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999999888876767788999999999999998543
No 141
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.28 E-value=7.5e-12 Score=108.29 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=87.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeE--------Ee-CCCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEH--------VA-GDMFQSVP 247 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~--------~~-~d~~~~~p 247 (353)
..+++.+.....+.+|||||||||.++..+++. +..+++++|+ +.+++.+++ .+++.. .. .|+..+.+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 345555552234579999999999999999987 3359999999 677766543 233332 22 22221112
Q ss_pred CCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-ccccccccccchhhhhhCCCCcccCHHHHH
Q 018576 248 KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT-SIESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 248 ~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
|.+.+..++..+ ..+|++++++|+|||++++.. .|..... ..........+.. ....+.+++.
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l~ 168 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKVL 168 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHHH
Confidence 444444444433 578999999999999999853 1110000 0000000000100 1123678999
Q ss_pred HHHHhcCCceeeEeee
Q 018576 327 TLATGAGFSGIRSDLV 342 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~ 342 (353)
++++++||+++.+...
T Consensus 169 ~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 169 KTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHTEEEEEEEEC
T ss_pred HHHHHCCCEEEEEEEc
Confidence 9999999998877654
No 142
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.28 E-value=4.6e-12 Score=104.83 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=84.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CC---CCC--cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SV---PKG--DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~---p~~--D~i~~~~~L 258 (353)
..++.+|||||||+ +.+|. +.|++.++++ .+++++.+|+.+ +. +.+ |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56788999999996 23787 7788877653 369999999987 54 544 999999999
Q ss_pred ccC-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 259 HDW-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 259 h~~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
|++ ++. .++|++++++|||||++++.++...... . ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~------------~--------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD------------N--------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC------------S--------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc------------c--------ccccCCHHHHHHHHHHCCC
Confidence 998 553 6899999999999999999765432210 0 1123578999999999999
No 143
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.28 E-value=1.2e-11 Score=101.68 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=83.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-C--------CCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-S--------VPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------~p~~ 249 (353)
.+...+....+..+|||+|||+|.++..+++.+ |+.+++++|.+.+++ .+++++..+|+.+ + ++.+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 445555424566799999999999999999995 778999999955432 2689999999987 4 5543
Q ss_pred --cEEEeccccccCCchH---------HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 --DAIFLKWILHDWDDEH---------CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~---------~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|...... ...+++++.+.|+|||++++.+..
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999988765431 158899999999999999987753
No 144
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.27 E-value=1.3e-11 Score=102.36 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=92.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D 250 (353)
.+...+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.++++ ++++++.+|+.++++. . |
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444454 56678999999999999999998 7889999998 7777776653 5799999998775554 3 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++..+ + ....+++++++. |||++++..... .+..++.++++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~-----------------------------~~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVL-----------------------------ENAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCH-----------------------------HHHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEeccc-----------------------------ccHHHHHHHHH
Confidence 9999988 2 246889999988 999999877421 01346778899
Q ss_pred hcCCceeeE
Q 018576 331 GAGFSGIRS 339 (353)
Q Consensus 331 ~aGf~~v~~ 339 (353)
+.||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876544
No 145
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.27 E-value=1.2e-11 Score=106.20 Aligned_cols=98 Identities=11% Similarity=0.099 Sum_probs=78.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-------CC-c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-------KG-D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-------~~-D 250 (353)
..++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+..+ .. |
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34578999999999999999999998 789999998 7777766542 479999999865221 23 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|++.... .....+++++.+.|+|||.+++.+...
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99876542 345689999999999999888876654
No 146
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.27 E-value=1e-11 Score=109.01 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=96.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-CCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 248 (353)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 35566565 677889999999999999999998 67899999998 777766653 2689999999987 4665
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
+ |+|++. +++. ..+|+++.++|+|||++++..+... ...++.
T Consensus 165 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 4 999973 3333 4789999999999999999774210 123566
Q ss_pred HHHHhcCCceeeEee
Q 018576 327 TLATGAGFSGIRSDL 341 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~ 341 (353)
+.++++||+.+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 677888998776654
No 147
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.26 E-value=3.2e-11 Score=106.21 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=93.5
Q ss_pred cC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C--CCC-C-cEEE
Q 018576 188 FA-NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S--VPK-G-DAIF 253 (353)
Q Consensus 188 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~--~p~-~-D~i~ 253 (353)
.. +..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999998776 9999999 7777776542 479999999987 3 333 3 9999
Q ss_pred eccccccC------------------CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC
Q 018576 254 LKWILHDW------------------DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP 315 (353)
Q Consensus 254 ~~~~Lh~~------------------~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (353)
++-.++.. .......+++.+.+.|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 97554332 012346799999999999999998421 1
Q ss_pred CCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 316 GGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 316 ~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....++.+++++.||...++.++
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEe
Confidence 12456778888899988776654
No 148
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.26 E-value=2e-11 Score=114.28 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=86.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC-------CC--------CCCeeEEeCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA-------PL--------HPHIEHVAGDM 242 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~rv~~~~~d~ 242 (353)
..++..+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 44555555 66788999999999999999999888889999998 5565555 32 25799998765
Q ss_pred CC-C--C---CC-CcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 243 FQ-S--V---PK-GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 243 ~~-~--~---p~-~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
+. + + .. .|+|+++++++. ++...+|+++.+.|+|||+|++.+...+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 42 2 2 12 299999877742 456788999999999999999998877654
No 149
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.26 E-value=1.3e-11 Score=108.09 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=84.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHH--CCCCeEEEecc-hHHHhhCCCC---C-------C------------
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSK--YPYIKGINFDQ-PHVIEHAPLH---P-------H------------ 234 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------r------------ 234 (353)
.+++.+. ..+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.|++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 335679999999999999999998 78889999999 7788777632 2 2
Q ss_pred -------------ee-------------EEeCCCCCCC------CC-C-cEEEeccccccCCc-------hHHHHHHHHH
Q 018576 235 -------------IE-------------HVAGDMFQSV------PK-G-DAIFLKWILHDWDD-------EHCLKLLKNC 273 (353)
Q Consensus 235 -------------v~-------------~~~~d~~~~~------p~-~-D~i~~~~~Lh~~~~-------~~~~~~L~~~ 273 (353)
++ +..+|++++. +. . |+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 9999998854 33 4 99999877765443 4567999999
Q ss_pred HHhCCCCCEEEEEeee
Q 018576 274 YKSVPEDGKVIVVELM 289 (353)
Q Consensus 274 ~~~L~pgG~l~i~e~~ 289 (353)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999985543
No 150
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.25 E-value=1e-11 Score=118.69 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=86.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
...+++.+. ..++.+|||||||+|.++..+++ .+..+++++|.+.+++.|++. ++|+++.+|+.+ +.++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345566555 55678999999999999998887 577899999996677666542 689999999988 66655
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
|+|++...+|++.++.....+.++++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999888888777778889999999999999985
No 151
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.24 E-value=1.9e-11 Score=111.95 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=79.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCC-C-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPK-G- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~- 249 (353)
.+.+.+. ..++.+|||||||+|.++..+++. +..+++++|.+++++.+++. ++++++.+|+.+ ++|. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 566789999999999999999887 45699999996577766542 689999999988 6663 3
Q ss_pred cEEEecc---ccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 250 DAIFLKW---ILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 250 D~i~~~~---~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
|+|++.. .+++ ......+|+++++.|+|||+++
T Consensus 133 D~Ivs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLF--ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence 9999876 3443 3446789999999999999987
No 152
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.24 E-value=4.5e-11 Score=102.13 Aligned_cols=129 Identities=9% Similarity=0.075 Sum_probs=100.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC---CcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK---GDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~---~D~i~~~~~ 257 (353)
+++.+|+|||||+|..++.+++..|..+++++|. +.+++.|+++ ++|+++.+|.+++++. .|+|++...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999999999999999 6777776642 5799999999886652 398887655
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
- .+-...+|..+.+.|+|+|+|++.-. ...+..+++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEE
Confidence 2 34467999999999999999887332 024568899999999988
Q ss_pred eEee---eCCceEEEEEe
Q 018576 338 RSDL---VTGNFWVMEFY 352 (353)
Q Consensus 338 ~~~~---~~~~~~vi~~~ 352 (353)
+..- .+.++.+|.+.
T Consensus 139 ~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 7542 23456666654
No 153
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.24 E-value=1.9e-11 Score=106.07 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------CCCCeeEEeCCCCC--C--CCCC--
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------LHPHIEHVAGDMFQ--S--VPKG-- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~--~--~p~~-- 249 (353)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ ...+++++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 66766442 23679999999976 2 4454
Q ss_pred cEEEeccccccCCch--H----HHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDE--H----CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~--~----~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.|++.+.-...... . ...+|++++++|+|||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 888865433211100 0 13799999999999999998753
No 154
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.23 E-value=4.3e-11 Score=100.14 Aligned_cols=100 Identities=8% Similarity=-0.090 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CC-CC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VP-KG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p-~~-D~i~~~~ 256 (353)
.++.+|||+|||+|.++..+++. +..+++++|. +.+++.++++ ++++++++|+.+ . .+ +. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999988774 5668999999 7788877653 589999999876 2 32 33 9999998
Q ss_pred ccccCCchHHHHHHHHHHH--hCCCCCEEEEEeeec
Q 018576 257 ILHDWDDEHCLKLLKNCYK--SVPEDGKVIVVELML 290 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~~~ 290 (353)
.+|.. .+...++++++.+ +|+|||++++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87653 3567899999999 999999999977643
No 155
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.23 E-value=8.6e-12 Score=109.17 Aligned_cols=121 Identities=8% Similarity=-0.037 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCC----CC-cEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVP----KG-DAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p----~~-D~i~~~ 255 (353)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+++++.+|+.+ +.. +. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999998 7777766642 469999999876 331 23 999987
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.+- + ...+++.+.+.|+|||++++....... ....++...++..||.
T Consensus 159 a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 2 368999999999999999986532100 0122466778889999
Q ss_pred eeeEeee
Q 018576 336 GIRSDLV 342 (353)
Q Consensus 336 ~v~~~~~ 342 (353)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887765
No 156
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.23 E-value=5.4e-11 Score=101.85 Aligned_cols=129 Identities=10% Similarity=0.046 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-C-C-cEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-K-G-DAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~-~-D~i~~~~~ 257 (353)
+++.+|+|||||+|.+++.+++..|..+++++|. +.+++.|+++ ++|+++.+|.++.++ . . |+|++...
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3568999999999999999999998889999999 7777777652 579999999998544 2 3 99987765
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
. .+-...+|....+.|+++|+|++.-.. ..+.+++||.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPNN-------------------------------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 4 345778999999999999998875420 15678899999999998
Q ss_pred eEee---eCCceEEEEEe
Q 018576 338 RSDL---VTGNFWVMEFY 352 (353)
Q Consensus 338 ~~~~---~~~~~~vi~~~ 352 (353)
+..- .+.++.+|.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 7553 24567777664
No 157
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.21 E-value=4.7e-11 Score=106.27 Aligned_cols=120 Identities=10% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~L 258 (353)
.++.+|||+|||+|.++..+++..+. +++++|. +.+++.++++ ++++++++|+.+..+. . |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999999876 8999999 7778776542 4699999999883333 3 999886442
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
....+++++.++|+|||.+++.+...... ......+++.+.++++||+...
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 12578999999999999999988753210 0012466788999999998765
No 158
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.21 E-value=2.1e-11 Score=108.52 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=82.0
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
..++..+. ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+.++.+
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 34555555 677789999999999999999999 57899999998 7777766542 57999999998765543
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++. .++. ..+|+++.++|+|||++++...
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 999873 3333 4789999999999999999774
No 159
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.21 E-value=1.3e-11 Score=104.83 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~ 260 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++++..+|+.+..+. . |+|++..+ ++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~ 143 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC
Confidence 367999999999999999999999999999998 7777766542 4599999999874343 3 99997543 22
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
...++++++++|+|||++++..
T Consensus 144 -----~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 144 -----LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEe
Confidence 4689999999999999999863
No 160
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.21 E-value=1.4e-11 Score=107.45 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---C-----CCC-c
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---V-----PKG-D 250 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~-----p~~-D 250 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++|+++.+|+.+. . ++. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3468999999999999999999986 789999998 6677666542 5899999998762 1 233 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+|++... ......+|+++.+.|+|||.|++-+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9988654 244568999999999999999997776543
No 161
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.20 E-value=1.8e-11 Score=112.58 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
..++.+|||||||+|.++..+++. +..+++++|.+++++.|++. ++++++.+|+.+ ++|.+ |+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345789999999999999999987 66799999997677766542 569999999988 67744 99999765
Q ss_pred cccCC-chHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 LHDWD-DEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 Lh~~~-~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+.+. ......+++.+.++|+|||+++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 44432 33467899999999999999874
No 162
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.20 E-value=2.3e-11 Score=103.47 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=80.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-C-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K-G- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~- 249 (353)
.++..+. ..++.+|||||||+|.++..+++. ..+++++|. +.+++.++++ ++++++.+|..+..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 4455555 667889999999999999999998 679999999 7777776542 579999999987333 3 3
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|++++ ++++.|+|||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999875 478899999999997654
No 163
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=2.3e-11 Score=103.83 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=81.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K-G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~ 249 (353)
.++..+. ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+..+.+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4445454 5667899999999999999999988 6689999998 7777776642 569999999866554 2 3
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++..++|+++ +++++.|+|||++++...
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 9999999999876 367889999999999864
No 164
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.19 E-value=5.3e-11 Score=103.32 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHH----CCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCCC--CC---C-C-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK----YPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQS--VP---K-G-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--~p---~-~-D~i~~~~ 256 (353)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|+.+. ++ . . |+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 68899999999 777777764 36899999999763 22 3 2 9998765
Q ss_pred ccccCCchHHHHHHHHHHH-hCCCCCEEEEEee
Q 018576 257 ILHDWDDEHCLKLLKNCYK-SVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~-~L~pgG~l~i~e~ 288 (353)
. |. +..++|+++.+ .|+|||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 5 42 35689999997 9999999999765
No 165
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.18 E-value=2.8e-11 Score=108.62 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=79.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---CCCC-C-cEEEecccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---SVPK-G-DAIFLKWIL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~-~-D~i~~~~~L 258 (353)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 788887764 2689999999876 2333 3 999987555
Q ss_pred ccCCchH--HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 259 HDWDDEH--CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 259 h~~~~~~--~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+...... ...++++++++|+|||.+++....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 4322222 258999999999999999987653
No 166
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.18 E-value=2.8e-11 Score=112.42 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=80.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~L 258 (353)
..++.+|||||||+|.++..+++. ...+++++|.+.+++.+++. ++++++.+|+.+ +.++. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 556789999999999999999987 33499999997777666542 569999999987 66654 999997766
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 259 HDWDD-EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 259 h~~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|.+.. .....+++++++.|+|||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 66542 33678999999999999999876654
No 167
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.18 E-value=1.6e-11 Score=106.27 Aligned_cols=98 Identities=17% Similarity=0.307 Sum_probs=79.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC----CC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP----KG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p----~~-D~i~~ 254 (353)
..++.+|||||||+|..+..+++.+|..+++++|. +.+++.+++. ++++++.+|+.+..+ .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34578999999999999999999889999999999 7777777642 489999999987433 33 99987
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
... ......+++++.+.|+|||+|++-+...
T Consensus 149 ~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred cCc-----HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 643 2335689999999999999998865543
No 168
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.16 E-value=1.4e-10 Score=100.14 Aligned_cols=129 Identities=10% Similarity=0.062 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-C--CcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-K--GDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~--~D~i~~~~~ 257 (353)
+++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|+++ ++|++..+|.++.++ . .|+|++...
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4568999999999999999999998889999999 7777777652 579999999998544 2 399887655
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
. .+-+..+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 3 345778999999999999999885420 25578899999999986
Q ss_pred eEee---eCCceEEEEEe
Q 018576 338 RSDL---VTGNFWVMEFY 352 (353)
Q Consensus 338 ~~~~---~~~~~~vi~~~ 352 (353)
+..- .+-++-+|.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 6442 33456666654
No 169
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.15 E-value=3e-11 Score=103.75 Aligned_cols=99 Identities=10% Similarity=0.158 Sum_probs=78.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC---CCC-----CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ---SVP-----KG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p-----~~- 249 (353)
..++.+|||||||+|..+..+++.++ +.+++++|. +.+++.++++ ++++++.+|+.+ ..+ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34578999999999999999999875 789999999 7788877652 479999999754 222 23
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++....+++. ...++++.+ +.|+|||.|++.+..
T Consensus 136 D~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999988777653 234677777 999999999886554
No 170
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.15 E-value=2.1e-10 Score=96.33 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=77.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC---------CeEEEecchHHHhhCCCCCCeeEE-eCCCCC-C---
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY---------IKGINFDQPHVIEHAPLHPHIEHV-AGDMFQ-S--- 245 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~rv~~~-~~d~~~-~--- 245 (353)
++...+..+.++.+|||||||+|.++..+++.++. .+++++|+.++ ...++++++ .+|+.. +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44455553456789999999999999999999865 79999999553 123578999 999876 2
Q ss_pred -----CCC-C-cEEEeccccccC----CchH-----HHHHHHHHHHhCCCCCEEEEEee
Q 018576 246 -----VPK-G-DAIFLKWILHDW----DDEH-----CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 246 -----~p~-~-D~i~~~~~Lh~~----~~~~-----~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++. . |+|++...+|.. .+.. ..+++++++++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 233 3 999987655431 1111 14889999999999999998764
No 171
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.15 E-value=3.5e-11 Score=110.36 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCC------chHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCC-------CC-cE
Q 018576 189 ANIKQLVDVGGN------LGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVP-------KG-DA 251 (353)
Q Consensus 189 ~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p-------~~-D~ 251 (353)
.++.+||||||| +|..+..++++ +|+.+++++|+ +.+. ...++++++++|+.+ +++ .. |+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 356899999999 77777777765 59999999999 5553 234789999999987 554 23 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|++.. .|++ .+..++|++++++|||||++++.|...
T Consensus 292 Visdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 292 VIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp EEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred EEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 99864 4654 346799999999999999999998763
No 172
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.15 E-value=4.7e-11 Score=105.62 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEEeccccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~ 263 (353)
.++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++.+..+|+.+ +++.+ |+|++.++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4567999999999999999999998899999999 7788777653 678999999987 66554 999987653
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+++++++|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24899999999999999998654
No 173
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.14 E-value=3e-11 Score=104.60 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=80.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC-----CCC-cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV-----PKG-DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~-----p~~-D~i~ 253 (353)
..++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+.. +.. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999999 7777766542 57999999987622 233 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+....+ ....+|+++.+.|+|||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 987764 34689999999999999999876543
No 174
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.14 E-value=4.9e-11 Score=106.73 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCC--CC-C-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSV--PK-G-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~--p~-~-D~i 252 (353)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+.+ +. . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999878889999999 777776653 358999999998733 22 3 999
Q ss_pred EeccccccCCchHH--HHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++...-+.-+.... ..++++++++|+|||.+++...
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 199 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEecC
Confidence 99655443222222 6899999999999999998653
No 175
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.14 E-value=3.9e-11 Score=103.21 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC-----CC-c
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP-----KG-D 250 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~~-D 250 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999998 789999999 7777766542 5799999998652 11 33 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
+|++... ......+++++++.|+|||+|++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9986543 34457899999999999999998776643
No 176
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.14 E-value=3.8e-11 Score=99.25 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=80.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VPK 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p~ 248 (353)
.+.+.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 34443332345689999999999999999987 6679999999 7777776542 4699999998762 223
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHH--HhCCCCCEEEEEeeec
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCY--KSVPEDGKVIVVELML 290 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~--~~L~pgG~l~i~e~~~ 290 (353)
. |+|++...+|. .....+++.+. ++|+|||.+++.....
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 4 99999877653 33456777776 8999999999877654
No 177
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.14 E-value=4.4e-11 Score=104.49 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC--------------CCCCeeEEeCCCCCC----CCCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP--------------LHPHIEHVAGDMFQS----VPKG 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~rv~~~~~d~~~~----~p~~ 249 (353)
++..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ..++++++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567999999999999999999999999999998 66665542 225799999999863 3333
Q ss_pred --cEEEeccccccCCchHH-----------HHHHHHHHHhCCCCCEEEEEe
Q 018576 250 --DAIFLKWILHDWDDEHC-----------LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~-----------~~~L~~~~~~L~pgG~l~i~e 287 (353)
|.|++. +++... ..+++++.++|+|||.|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666543 222211 479999999999999999953
No 178
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.13 E-value=4.9e-11 Score=103.44 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~ 249 (353)
...+++.+. ..+..+|||||||+|.++..+++..+ .+++++|. +.+++.+++. +++++..+|+..+++. .
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 344555555 66778999999999999999999988 89999998 7777766542 4699999998545553 2
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..+++++.+ ++.+.|+|||++++....
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 99999999998763 578899999999987653
No 179
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.13 E-value=1.2e-10 Score=101.13 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-----------
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP----------- 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p----------- 247 (353)
..++.+|||||||+|..+..+++.+| ..+++++|. +.+++.+++. ++++++.+|+.+..+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34578999999999999999999987 689999999 7777766542 459999999765211
Q ss_pred --------CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 248 --------KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 248 --------~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.. |+|++.... .....+++++++.|+|||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 33 999987543 345688999999999999999876544
No 180
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.13 E-value=6.7e-11 Score=104.24 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=76.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------C---CCeeEEeCCCCCC--------CCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------H---PHIEHVAGDMFQS--------VPK 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~---~rv~~~~~d~~~~--------~p~ 248 (353)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ . ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 667665543 1 3699999999874 233
Q ss_pred -C-cEEEeccccccC----------------CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 -G-DAIFLKWILHDW----------------DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~----------------~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|+++-.++.. .......+++.+.+.|+|||+++++-
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 999998443321 12235789999999999999999854
No 181
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.13 E-value=2.7e-10 Score=95.53 Aligned_cols=108 Identities=14% Similarity=0.236 Sum_probs=79.1
Q ss_pred hhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCC--------
Q 018576 175 SLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSV-------- 246 (353)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~-------- 246 (353)
...+.++.+.+.-+.++.+|||+|||+|.++..+++. ..+++++|+.++ ...++++++++|+.+..
T Consensus 10 ~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~ 83 (191)
T 3dou_A 10 AFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRA 83 (191)
T ss_dssp HHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHH
Confidence 3345567777763467789999999999999999988 779999999543 23468999999998721
Q ss_pred -C----CC-cEEEeccccccCC----c-----hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 247 -P----KG-DAIFLKWILHDWD----D-----EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 247 -p----~~-D~i~~~~~Lh~~~----~-----~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ .. |+|++........ + +.+..+|+.+.++|+|||+|++...
T Consensus 84 ~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 23 9999864322111 1 1245789999999999999997554
No 182
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.13 E-value=6.5e-11 Score=102.21 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=80.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCCCCC-C-C-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQSVP-K-G-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~~~p-~-~-D 250 (353)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++. .+++++.+|+.+..+ . . |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555555 6667899999999999999999986 78999998 7777766543 379999999977433 2 3 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+|++..++|++.+ ++.+.|+|||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999999998763 478899999999998753
No 183
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.12 E-value=7.5e-11 Score=107.03 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=81.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K-G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~ 249 (353)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ ++++++.+|+.+..+ . .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 4455555 66778999999999999999999887 488999998 7777776542 569999999977332 2 3
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|++. +++.+.|+|||++++....
T Consensus 145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 9999999999876 3577899999999998643
No 184
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.12 E-value=1.4e-10 Score=107.66 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCC-CC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVP-KG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p-~~-D~i~~~~~Lh~ 260 (353)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.++++ .+++++.+|+.+ ..+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4679999999999999999997 569999998 7778777653 258999999988 344 23 99999999987
Q ss_pred ---CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 ---WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ---~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
...+...+++++++++|+|||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3346678999999999999999999753
No 185
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.12 E-value=9.1e-11 Score=106.93 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=76.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCC-C-cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPK-G-DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~-D~i~~~~~ 257 (353)
..++.+|||||||+|.++..+++. +..+++++|.+++++.+++. ++++++.+|+.+ +.|. . |+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345689999999999999998886 55699999997677665542 579999999988 6663 3 99998865
Q ss_pred cccCC-chHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 LHDWD-DEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 Lh~~~-~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+.+. ......+++++.+.|+|||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 44432 33456899999999999999974
No 186
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.10 E-value=2.5e-10 Score=100.62 Aligned_cols=107 Identities=14% Similarity=-0.007 Sum_probs=76.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC--C------CeeEE--eCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH--P------HIEHV--AGDMFQSVP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------rv~~~--~~d~~~~~p 247 (353)
..++.+... +.+..+|||||||+|.++..+++. .+++++|+.+++..+++. . ++.++ .+|+.+.-+
T Consensus 63 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 138 (265)
T 2oxt_A 63 LAWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPV 138 (265)
T ss_dssp HHHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCC
T ss_pred HHHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCC
Confidence 344555422 556789999999999999999887 689999995564433322 2 68899 899986213
Q ss_pred CC-cEEEeccccccCCchH-----HHHHHHHHHHhCCCCC--EEEEEeee
Q 018576 248 KG-DAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDG--KVIVVELM 289 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG--~l~i~e~~ 289 (353)
+. |+|++... +...... ...+|+.++++|+||| .+++....
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 33 99999876 4332211 1248999999999999 88886554
No 187
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.09 E-value=5e-11 Score=102.63 Aligned_cols=136 Identities=11% Similarity=-0.011 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCC-CC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVP-KG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p-~~-D~i~~~~~Lh~ 260 (353)
..+.+|||||||+|-++..+....|..+++++|+ +.+++.++++ .+.++...|+....| .. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 6778776653 457889999988444 44 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
+.+++....+ ++.++|+|+|.++-.+.-.=..+ .. +-.....+.|++.+.+.|.+ ++..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Gr------------s~-------gm~~~Y~~~~e~~~~~~g~~-~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQR------------SK-------GMFQNYSQSFESQARERSCR-IQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC--------------------------CHHHHHHHHHHHHHHHHTCC-EEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCC------------Cc-------chhhHHHHHHHHHHHhcCCc-eeee
Confidence 9877666777 89999999988886665110110 00 11122367899999999984 4444
Q ss_pred eeCCc
Q 018576 341 LVTGN 345 (353)
Q Consensus 341 ~~~~~ 345 (353)
.+++-
T Consensus 270 ~~~nE 274 (281)
T 3lcv_B 270 EIGNE 274 (281)
T ss_dssp EETTE
T ss_pred eecCe
Confidence 55443
No 188
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.08 E-value=2.8e-10 Score=101.45 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-CC---cEEEec--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-KG---DAIFLK-- 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~~---D~i~~~-- 255 (353)
+..+|||||||+|.++..+++. |+.+++++|+ +.+++.++++ ++++++.+|++++.+ .- |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999999 7788777642 369999999988543 34 999997
Q ss_pred ----------cccccCCch------HHHHHHHHHH-HhCCCCCEEEE
Q 018576 256 ----------WILHDWDDE------HCLKLLKNCY-KSVPEDGKVIV 285 (353)
Q Consensus 256 ----------~~Lh~~~~~------~~~~~L~~~~-~~L~pgG~l~i 285 (353)
.+. +.+.. +...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 233 22111 1127899999 99999999997
No 189
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.08 E-value=2.6e-10 Score=101.06 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=75.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC--C------CeeEE--eCCCCC-CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH--P------HIEHV--AGDMFQ-SV 246 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------rv~~~--~~d~~~-~~ 246 (353)
..++.+... +.++.+|||||||+|.++..+++. .+++++|+..++..+++. . ++.++ .+|+.+ +
T Consensus 71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 145 (276)
T 2wa2_A 71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME- 145 (276)
T ss_dssp HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-
T ss_pred HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-
Confidence 344555422 456789999999999999999987 589999995564444322 2 68899 899876 3
Q ss_pred CCC-cEEEeccccccCCchH-----HHHHHHHHHHhCCCCC--EEEEEeee
Q 018576 247 PKG-DAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDG--KVIVVELM 289 (353)
Q Consensus 247 p~~-D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG--~l~i~e~~ 289 (353)
+.. |+|++... +...... ...+|+.+.++|+||| .+++....
T Consensus 146 ~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 333 99999877 4332211 1248999999999999 88885543
No 190
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.08 E-value=6.6e-11 Score=100.70 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC--CCCC-CcEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ--SVPK-GDAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~~p~-~D~i~~~~ 256 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ +... -|+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3467999999999999999999988 789999999 7788777642 479999999865 2223 38888763
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
. ......+++++++.|+|||++++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2 2335789999999999999999866544
No 191
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.06 E-value=8.8e-11 Score=97.71 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=78.5
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC------
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV------ 246 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~------ 246 (353)
+.+.+....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.++++ ++++++.+|+.+..
T Consensus 35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (187)
T 2fhp_A 35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE 113 (187)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc
Confidence 334333234568999999999999999888 45679999999 7788777652 47999999987622
Q ss_pred CCC-cEEEeccccccCCchHHHHHHHHH--HHhCCCCCEEEEEeeec
Q 018576 247 PKG-DAIFLKWILHDWDDEHCLKLLKNC--YKSVPEDGKVIVVELML 290 (353)
Q Consensus 247 p~~-D~i~~~~~Lh~~~~~~~~~~L~~~--~~~L~pgG~l~i~e~~~ 290 (353)
+.. |+|++...+|... ...+++.+ .++|+|||.+++.....
T Consensus 114 ~~~fD~i~~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 114 KLQFDLVLLDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TCCEEEEEECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 9999988866322 34566666 88899999999876543
No 192
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.06 E-value=1.4e-10 Score=99.53 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=75.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC---CC-CC-cEEEec
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS---VP-KG-DAIFLK 255 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~---~p-~~-D~i~~~ 255 (353)
..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. ++ +. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999985 789999999 7777766542 4799999998762 32 33 999886
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
... .....+++++.+.|+|||.+++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 433 334678999999999999999865543
No 193
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.06 E-value=1.1e-10 Score=102.02 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC--C-C------CCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ--S-V------PKG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~-~------p~~- 249 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+ + . +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 4568999999999999999999987 789999999 7777766542 579999999865 2 2 233
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++.... .....+++++.+.|+|||.|++.+...
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 999986432 335789999999999999998866543
No 194
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.05 E-value=1.1e-09 Score=97.49 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc--hHHHhhCCCC----------------CCeeEEeCCCCC---CC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ--PHVIEHAPLH----------------PHIEHVAGDMFQ---SV 246 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~rv~~~~~d~~~---~~ 246 (353)
...+.+|||||||+|.++..+++. ...+++++|. +.+++.++++ +++++...|..+ .+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 345679999999999999988875 3458999998 4666554321 268888665443 12
Q ss_pred -----CCC-cEEEeccccccCCchHHHHHHHHHHHhCC---C--CCEEEEE
Q 018576 247 -----PKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVP---E--DGKVIVV 286 (353)
Q Consensus 247 -----p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~---p--gG~l~i~ 286 (353)
+.. |+|++..++|+. +....+++.+.++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 233 999999999874 446799999999999 9 9998774
No 195
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.04 E-value=5.4e-10 Score=102.95 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=84.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~ 248 (353)
...++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++ +++++.++|+.+ +.+.
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 334445444 6778899999999999999999988 8899999999 7788777653 379999999987 4443
Q ss_pred -C-cEEEeccccccCCc--hH----HHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 -G-DAIFLKWILHDWDD--EH----CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~~~--~~----~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
. |+|+++-..+.... .+ ...+++++++.|+|||+++++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 99999655432111 11 26899999999999999999653
No 196
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.03 E-value=4.7e-10 Score=101.54 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=78.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC-CCC-cEEEec-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV-PKG-DAIFLK- 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~-p~~-D~i~~~- 255 (353)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+++++.+|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56678999999999999999999985 589999998 6777766542 479999999877 32 333 999983
Q ss_pred -----ccccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 -----WILHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 -----~~Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.+++. |+..+ ..++|+++.+.|||||+|++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 23332 22221 1589999999999999999877543
No 197
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.02 E-value=1.2e-10 Score=98.55 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC--C--C-C-CcEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS--V--P-K-GDAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~--~--p-~-~D~i~~ 254 (353)
++.+|||+|||+|.++..++.... .+++++|. +.+++.++++ ++++++.+|+.+. . + . -|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 467999999999999998777643 58999999 7788777642 5899999998662 1 1 3 499999
Q ss_pred ccccccCCchHHHHHHHHH--HHhCCCCCEEEEEeeec
Q 018576 255 KWILHDWDDEHCLKLLKNC--YKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~--~~~L~pgG~l~i~e~~~ 290 (353)
...+| . .....+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 88865 2 3456888888 56799999999877644
No 198
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.02 E-value=2.5e-10 Score=98.40 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=76.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC------CCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCCCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP------YIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSVPK- 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p~- 248 (353)
..+..+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ .++++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45568999999999999999998765 369999998 777776654 24799999999875554
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ |+|++...+|++. +++.+.|+|||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 3 9999999998764 567889999999998754
No 199
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.02 E-value=4.3e-10 Score=99.96 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=81.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC---------CCCeeEEeCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL---------HPHIEHVAGDMFQ-S 245 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~ 245 (353)
...++..+. ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345556565 677789999999999999999996 47889999999 777766543 2579999999987 4
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++.+ |+|++. .++. ..+|+++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence 5443 999883 2232 37899999999999999998753
No 200
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=99.02 E-value=9.1e-10 Score=99.03 Aligned_cols=104 Identities=15% Similarity=0.081 Sum_probs=72.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-----hHHHhhCC--CC--CCeeEEeC-CCCCCCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-----PHVIEHAP--LH--PHIEHVAG-DMFQSVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~rv~~~~~-d~~~~~p~~ 249 (353)
.+.+. ..+.++.+|||||||+|.++..+++. .+++++|. +..++... .. +++.++++ |+....++.
T Consensus 73 ~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~ 148 (305)
T 2p41_A 73 WFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 148 (305)
T ss_dssp HHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCC
Confidence 34444 21456689999999999999999987 47999998 43333222 12 57999999 887622233
Q ss_pred -cEEEeccccc---cCCchH-HHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILH---DWDDEH-CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh---~~~~~~-~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...++ ...+.. ...+|+.++++|+|||.+++..
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999976654 211221 2268999999999999888743
No 201
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.00 E-value=3.1e-10 Score=96.00 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC--CCCC-C-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ--SVPK-G-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p~-~-D~i~~~~~L 258 (353)
+..+|||+|||+|.++..++++.. .+++++|. +.+++.++++ ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 367999999999999999887643 48999999 7788877642 489999999876 3333 3 999998776
Q ss_pred ccCCchHHHHHHHHHHH--hCCCCCEEEEEeeec
Q 018576 259 HDWDDEHCLKLLKNCYK--SVPEDGKVIVVELML 290 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~~~ 290 (353)
|. .....+++.+.+ +|+|||.+++.....
T Consensus 133 ~~---~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 RR---GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CC---CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 52 334577888876 499999999876543
No 202
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.99 E-value=1.7e-10 Score=94.40 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C-CeeEEeCCCCCCCC------CC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P-HIEHVAGDMFQSVP------KG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-rv~~~~~d~~~~~p------~~-D~i~~~~ 256 (353)
+..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ . +++++.+|+.+..+ +. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998765 999999 7788777653 2 79999999876221 13 9999998
Q ss_pred ccccCCchHHHHHHHHHH--HhCCCCCEEEEEeeec
Q 018576 257 ILHDWDDEHCLKLLKNCY--KSVPEDGKVIVVELML 290 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~--~~L~pgG~l~i~e~~~ 290 (353)
.+|. .. .++++.+. ++|+|||.+++.....
T Consensus 119 ~~~~-~~---~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DL---AALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CT---THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCch-hH---HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 8762 22 24455555 9999999999876644
No 203
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.99 E-value=1.2e-09 Score=95.09 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=79.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC-CC-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV-PK-G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~-p~-~ 249 (353)
.++..+. ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++++..+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4455555 667789999999999999999998 779999998 6777766542 57999999998854 44 3
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++. .++ ...+++++.++|+|||++++....
T Consensus 159 ~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VRE--PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSC--GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999973 222 247899999999999999998753
No 204
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.99 E-value=2.1e-10 Score=102.27 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i~ 253 (353)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .++. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 777776543 36899999998762 2334 9999
Q ss_pred eccccccCCchHH--HHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e 287 (353)
+....+..+.... ..++++++++|+|||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8655443222222 689999999999999999863
No 205
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.99 E-value=5.3e-10 Score=96.20 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=76.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCC----
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-----PYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSV---- 246 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~---- 246 (353)
..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999987 5789999998 677776654 247999999987743
Q ss_pred -CC-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 247 -PK-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 247 -p~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+. . |+|++...+|++ ++++.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 22 2 999999998864 46678899999999997654
No 206
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.99 E-value=2.2e-11 Score=105.98 Aligned_cols=136 Identities=17% Similarity=0.106 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh 259 (353)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999974 79999999 7788777642 4799999999873233 3 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
+..+. ...+.+++++|+|||.+++..... ... .. .. . -......+++..++...|.-.+..
T Consensus 156 ~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~-~~~------~~--~~----~----lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYA--TAETFDIRTMMSPDGFEIFRLSKK-ITN------NI--VY----F----LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGG--GSSSBCTTTSCSSCHHHHHHHHHH-HCS------CE--EE----E----EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchh--hhHHHHHHhhcCCcceeHHHHHHh-hCC------ce--EE----E----CCCCCCHHHHHHHhccCCCEEEEe
Confidence 86544 346788999999999955433211 000 00 00 0 011235677788887777665555
Q ss_pred eeeCCce
Q 018576 340 DLVTGNF 346 (353)
Q Consensus 340 ~~~~~~~ 346 (353)
....+..
T Consensus 217 ~~~~~~~ 223 (241)
T 3gdh_A 217 NFLNNKL 223 (241)
T ss_dssp EEETTEE
T ss_pred hhhcCcc
Confidence 5554443
No 207
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.99 E-value=2.4e-10 Score=101.47 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC--C-CCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS--V-PKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~--~-p~~-D~i~ 253 (353)
.++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+. . ++. |+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999998777789999999 777776543 36899999998762 2 233 9999
Q ss_pred eccccccCCchH--HHHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+....+..+... ...++++++++|+|||.+++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 965543322111 2578999999999999998863
No 208
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.98 E-value=2.3e-10 Score=103.55 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCC--C-CCC-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQS--V-PKG-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~--~-p~~-D~i 252 (353)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. . ++. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 677765542 36899999998762 2 233 999
Q ss_pred Eecccccc---CCchH--HHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILHD---WDDEH--CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh~---~~~~~--~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++....|. -+... ...++++++++|+|||.+++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99876654 11111 36899999999999999998743
No 209
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.98 E-value=2.6e-10 Score=103.76 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=76.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~-D~ 251 (353)
..++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+. . |+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 34678999999999999999999888889999999 777776653 25899999998652 333 3 99
Q ss_pred EEeccccccCCchH--HHHHHHHHHHhCCCCCEEEEE
Q 018576 252 IFLKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 252 i~~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~ 286 (353)
|++....+....+. ...++++++++|+|||.|++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865422111111 368999999999999999986
No 210
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.98 E-value=2.3e-10 Score=98.58 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC-----CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP-----KG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~~- 249 (353)
..++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34578999999999999999999987 789999998 7777766542 5899999998652 21 33
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99998643 2345689999999999999999877553
No 211
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.97 E-value=2.7e-10 Score=102.50 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC--CCC-CC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ--SVP-KG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~~p-~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +.. +. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 777776653 3689999999865 222 33 9999
Q ss_pred eccccccCCch--HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 254 LKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 254 ~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+....+..+.. ....++++++++|+|||.+++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 86554422111 124789999999999999998653
No 212
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.97 E-value=1.4e-09 Score=93.41 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=75.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCC-CC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSV-PK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~-p~-~-D~ 251 (353)
..+..+|||||||+|..+..+++.+ |..+++++|. +.+++.+++ .++++++.+|+.... +. . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456899999999999999999986 6679999998 777776653 247999999987632 23 3 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|++...++++. +++.+.|+|||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99998887653 5678899999999997653
No 213
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.97 E-value=1.6e-09 Score=92.39 Aligned_cols=95 Identities=8% Similarity=0.010 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.+++. .+.++...|... +.|.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 557899999999999999887 8999999999 7788777653 567899999988 55554 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+.+++....+ ++.+.|++++.++-..
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 8766655555 8999999987766555
No 214
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.97 E-value=3.1e-10 Score=98.56 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---C------CCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---V------PKG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~------p~~- 249 (353)
.++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++++++.+|..+. + +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4578999999999999999999987 789999999 7777766542 4799999998752 2 233
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99987632 3446789999999999999998766543
No 215
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.96 E-value=3e-10 Score=102.56 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCCC---CCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQSV---PKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~---p~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+.+ ++. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999878899999999 777776543 257999999987622 233 9999
Q ss_pred eccccccCCchHH--HHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e 287 (353)
+...-+.-++... ..++++++++|+|||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654332122211 689999999999999999865
No 216
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.96 E-value=4e-10 Score=100.36 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC----------------CCCCeeEEeCCCCCCC--CCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP----------------LHPHIEHVAGDMFQSV--PKG 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~rv~~~~~d~~~~~--p~~ 249 (353)
.++.+|||||||+|.++..+++. |..+++++|+ +.+++.++ ..++++++.+|..+.. ++.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 8889999999 77776543 2367999999986521 334
Q ss_pred -cEEEeccccccCCchH--HHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++....+..+... ...++++++++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999876543222122 2688999999999999999864
No 217
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.96 E-value=1.1e-09 Score=100.04 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=78.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC-----------------CCCeeEEe
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL-----------------HPHIEHVA 239 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~rv~~~~ 239 (353)
..++..+. ..++.+|||||||+|.++..+++. .|+.+++++|. +.+++.+++ .++++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667889999999999999999998 47789999998 667766543 25799999
Q ss_pred CCCCCC---CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 240 GDMFQS---VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 240 ~d~~~~---~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+|+.+. ++.+ |+|++... +. ..++++++++|+|||++++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NP--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----ST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-----CH--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 999873 3443 99998532 11 23799999999999999987764
No 218
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.95 E-value=2.3e-10 Score=99.00 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC-----CC-c
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP-----KG-D 250 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~~-D 250 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. ++ .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3467999999999999999999987 789999999 7777776542 4799999997541 21 33 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|++... ......+++++.+.|+|||.+++.+...
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 9987654 2445789999999999999999877654
No 219
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.95 E-value=3.5e-10 Score=102.56 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .++. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878899999999 777766542 25799999998762 2333 9999
Q ss_pred eccccccCCchHH--HHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e 287 (353)
+...-+.-+.... .+++++++++|+|||.+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8653221111211 689999999999999999864
No 220
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.93 E-value=7e-10 Score=108.53 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC---CCCCC--cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ---SVPKG--DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~---~~p~~--D~i~~~~ 256 (353)
..+.+|||||||+|.++..+++. +.+++|+|. +.+++.|+.+ -+++|.++++.+ ..+.+ |+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999997 679999999 7788777643 358999998865 23333 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+|||.+++....-+.++.+.|+++++.++......+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998776555566788888888887777765444
No 221
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.93 E-value=5.6e-10 Score=98.96 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=79.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC-CCCC-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS-VPKG-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~-~p~~-D~i~~~~~L 258 (353)
+.+..+|||+|||+|.++..+++..+..+++++|. +.+++.++++ +++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999998889999999 7788776542 5789999999874 2223 999987654
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
....+++++.+.|+|||.+++.....
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 23578999999999999999887754
No 222
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.92 E-value=2.2e-09 Score=90.47 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=67.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCCCCCCC-cEEEeccccccCCch
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDE 264 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~~~ 264 (353)
..++.+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .+++++.+|+.+ +|.. |+|++...+|++.+.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999987 5568999999 7788877654 379999999876 4444 999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 018576 265 HCLKLLKNCYKSV 277 (353)
Q Consensus 265 ~~~~~L~~~~~~L 277 (353)
...++++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 4568899999998
No 223
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.91 E-value=6.7e-10 Score=99.62 Aligned_cols=99 Identities=23% Similarity=0.261 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC--C-CCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS--V-PKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~--~-p~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. . ++. |+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3468999999999999999999878889999999 777766543 36899999998652 2 233 9999
Q ss_pred eccccccCCch---HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+...-+..... ...+++++++++|+|||.+++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 75432201110 12588999999999999999863
No 224
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.90 E-value=9.9e-10 Score=97.98 Aligned_cols=103 Identities=15% Similarity=0.232 Sum_probs=76.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 248 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345666666 6677899999999999999999984 48999998 6777665432 479999999987 6664
Q ss_pred CcEEEeccccccCCchHHHHHHH--------------HH--HHhCCCCCEEE
Q 018576 249 GDAIFLKWILHDWDDEHCLKLLK--------------NC--YKSVPEDGKVI 284 (353)
Q Consensus 249 ~D~i~~~~~Lh~~~~~~~~~~L~--------------~~--~~~L~pgG~l~ 284 (353)
-|+|+++... +|+.+....+|. ++ +++++|||+++
T Consensus 94 fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 5999886554 355554555553 22 46999999653
No 225
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.89 E-value=2.8e-09 Score=93.68 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCCCCCCC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQSVPKG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~~~p~~-D~i~~~~ 256 (353)
+++.+|||||||+|..+..+++. + .+++++|+ +.+++.++++ +|++++.+|..+.. +. |+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECC
Confidence 45689999999999999999998 7 89999999 7888888763 47999999987633 44 9999862
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+++. .++++++++|+|||.+++..
T Consensus 148 -----~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChH--HHHHHHHHhcCCCcEEEEEc
Confidence 2332 48999999999999999863
No 226
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.88 E-value=2.6e-09 Score=98.39 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
++..|||||||+|.+++..++. ...+++++|.+++++.|++ .++|.++.+|+.+ .+|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 4679999999999988766664 3458999998666666554 2689999999988 77766 99988433322
Q ss_pred CC-chHHHHHHHHHHHhCCCCCEEEE
Q 018576 261 WD-DEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 261 ~~-~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+. +.....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 33467888888999999998874
No 227
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.87 E-value=4.9e-09 Score=93.16 Aligned_cols=116 Identities=10% Similarity=0.044 Sum_probs=82.3
Q ss_pred cCCCCeEEEEcC------CchHHHHHHHHHCC-CCeEEEecchHHHhhCCCCCCeeE-EeCCCCC-CCCCC-cEEEeccc
Q 018576 188 FANIKQLVDVGG------NLGVTLQAITSKYP-YIKGINFDQPHVIEHAPLHPHIEH-VAGDMFQ-SVPKG-DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~rv~~-~~~d~~~-~~p~~-D~i~~~~~ 257 (353)
+.++.+|||||| |+|. ..+++..| +.+++++|+.+.+ +++++ +++|+.+ +.+.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 567789999999 5577 55566776 6899999994431 47899 9999987 44444 99998643
Q ss_pred ccc--------C-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 258 LHD--------W-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 258 Lh~--------~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
.+. . .......+|++++++|||||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 0 012356899999999999999998643210 11366777
Q ss_pred HHhcCCceeeEe
Q 018576 329 ATGAGFSGIRSD 340 (353)
Q Consensus 329 l~~aGf~~v~~~ 340 (353)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888888776665
No 228
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.83 E-value=2.6e-08 Score=84.21 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=70.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C-CeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P-HIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
..++.+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ . +++++.+|+.+ ++.. |+|++...+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcc
Confidence 3456899999999999999999873 348999999 7777766543 2 79999999876 3434 99999999888
Q ss_pred CCchHHHHHHHHHHHhC
Q 018576 261 WDDEHCLKLLKNCYKSV 277 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L 277 (353)
+......++++++.+.+
T Consensus 125 ~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS 141 (207)
T ss_dssp SSTTTTHHHHHHHHHHC
T ss_pred ccCCchHHHHHHHHHhc
Confidence 76555568899999998
No 229
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.83 E-value=1.1e-08 Score=96.31 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=78.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCC-CC-cEEEec
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVP-KG-DAIFLK 255 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~-D~i~~~ 255 (353)
.+++.+. .....+|||+|||+|.++..+++.+ +..+++++|+ +.+++.+ .+++++++|+.+..+ .. |+|+++
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 3444444 3445699999999999999999987 6789999999 6677666 689999999987433 34 999996
Q ss_pred ccccc----------CCchH-----------------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHD----------WDDEH-----------------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~----------~~~~~-----------------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-.... ++++. ...+++++.+.|+|||+++++.+
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 33221 21221 12679999999999999998775
No 230
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.83 E-value=4.4e-08 Score=89.91 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=95.6
Q ss_pred CCeEEEEcCCchHHHHHH--------HHHC-------CCCeEEEecchHH--------HhhCCC-------------CCC
Q 018576 191 IKQLVDVGGNLGVTLQAI--------TSKY-------PYIKGINFDQPHV--------IEHAPL-------------HPH 234 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a~~-------------~~r 234 (353)
..+|+|+|||+|..+..+ .+++ |.+++..-|+|.- +...++ .+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999988876 3333 7889999998521 222211 011
Q ss_pred -eeEEeCCCCC-CCCCC--cEEEeccccccCCch------------------------------------HHHHHHHHHH
Q 018576 235 -IEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDE------------------------------------HCLKLLKNCY 274 (353)
Q Consensus 235 -v~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~------------------------------------~~~~~L~~~~ 274 (353)
+.-+.+.|.. .+|.+ |+|+++.+||.+++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346678877 78876 999999999987621 3345799999
Q ss_pred HhCCCCCEEEEEeeecCCCCCCcccccccccc-ch----hh-hhh-----------C-CCCcccCHHHHHHHHH-hcCCc
Q 018576 275 KSVPEDGKVIVVELMLPEVPNTSIESKSNSHI-DV----LM-MTQ-----------N-PGGKERTKHEFMTLAT-GAGFS 335 (353)
Q Consensus 275 ~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~----~~-~~~-----------~-~~g~~~t~~~~~~ll~-~aGf~ 335 (353)
+.|+|||++++.-...++........ ..... +. +. +.. + .--..++.+|++++++ +.||+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~-~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGG-AGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHH-HHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccc-hhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999888765421111000 00000 11 10 000 0 0112368999999998 58999
Q ss_pred eeeEee
Q 018576 336 GIRSDL 341 (353)
Q Consensus 336 ~v~~~~ 341 (353)
+.++..
T Consensus 292 I~~le~ 297 (374)
T 3b5i_A 292 IDKLVV 297 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 876543
No 231
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.82 E-value=2.8e-09 Score=94.57 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=76.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC-----CCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV-----PKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~-----p~~-D~i 252 (353)
..++.+|||+|||+|..+..+++..++ .+++++|. +.+++.++++ .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999999876 89999998 6667665442 479999999876 32 333 999
Q ss_pred Eecc------cccc---CCc-------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLKW------ILHD---WDD-------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~~------~Lh~---~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++.- +++. |+. ....++|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 8862 2221 111 123689999999999999999887654
No 232
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.82 E-value=7e-09 Score=98.51 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CC-CC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VP-KG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p-~~-D~i~~ 254 (353)
..++.+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .+++++.+|+.+ + ++ .. |+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999877 89999998 6666655432 579999999977 3 44 33 99986
Q ss_pred ------ccccccCCch-------HH-------HHHHHHHHHhCCCCCEEEEEeeec
Q 018576 255 ------KWILHDWDDE-------HC-------LKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ------~~~Lh~~~~~-------~~-------~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+++..++. +. .++|+++.+.|+|||+|++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3445543332 11 578999999999999999988654
No 233
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.81 E-value=1.4e-08 Score=94.12 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=89.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC-C-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK-G-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~-D~i~~~~ 256 (353)
+.++.+|||+|||+|.++..++...+..+++++|+ +.+++.|+++ +++++..+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999987779999999 7788877653 479999999988 5553 3 9999976
Q ss_pred ccccCC------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 257 ILHDWD------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 257 ~Lh~~~------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
.++... ..-..++++.++++| +|.++++.. +.+.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 544321 111267889999988 555555432 2345667888
Q ss_pred hcCCceeeEeee
Q 018576 331 GAGFSGIRSDLV 342 (353)
Q Consensus 331 ~aGf~~v~~~~~ 342 (353)
+.||+..+...+
T Consensus 341 ~~G~~~~~~~~~ 352 (373)
T 3tm4_A 341 ENGFEIIHHRVI 352 (373)
T ss_dssp HTTEEEEEEEEE
T ss_pred HcCCEEEEEEEE
Confidence 899998877665
No 234
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.80 E-value=6.7e-09 Score=90.43 Aligned_cols=103 Identities=10% Similarity=0.168 Sum_probs=72.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC-c
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-D 250 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +++.+ +
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 345666565 6677899999999999999999986 68999999 677766543 3689999999988 66643 4
Q ss_pred EEEeccccccCCchHHHHHH--------------HHHHHhCCCCCEE
Q 018576 251 AIFLKWILHDWDDEHCLKLL--------------KNCYKSVPEDGKV 283 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L--------------~~~~~~L~pgG~l 283 (353)
..++.+.-++++.+-..+++ ..+.+.++|+|++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 44555554444443333443 2366677777644
No 235
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.80 E-value=4.7e-09 Score=96.24 Aligned_cols=100 Identities=9% Similarity=0.131 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCC-CC-cEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY-----IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVP-KG-DAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p-~~-D~i~~~ 255 (353)
....+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.. .++.++.+|.+.+.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35689999999999999999988764 68999999 6777766542 368999999988544 33 999999
Q ss_pred cccccCCchHH----------------HHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHDWDDEHC----------------LKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~~~~----------------~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88776654432 2689999999999999998774
No 236
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.78 E-value=1.9e-09 Score=94.01 Aligned_cols=107 Identities=8% Similarity=0.144 Sum_probs=78.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCC-Cc
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPK-GD 250 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~-~D 250 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. +.
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 345666666 6677899999999999999999985 78999999 7788877764 579999999988 6653 33
Q ss_pred EEEeccccccCCchHHHHHH--------------HHHHHhCCCCCEEEEEe
Q 018576 251 AIFLKWILHDWDDEHCLKLL--------------KNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L--------------~~~~~~L~pgG~l~i~e 287 (353)
.++..+.-++.+......++ +.+.+.|+|||++.++.
T Consensus 95 f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 95 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 34444444444433333443 56899999999887644
No 237
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.76 E-value=2.1e-08 Score=88.45 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC--cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG--DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~--D~i~~~~~L 258 (353)
.++.+|||+|||+|.+++.+++. +..+++++|+ |.+++.+++ .++|.++++|..+-.+++ |.|++...-
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence 46789999999999999999886 4568999999 777766654 267999999998733333 998876432
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
. ...+|..+.+.|+|||.|.+.+...... ......+.++++.++.|+++
T Consensus 203 ~------~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 203 R------THEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp S------GGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEE
T ss_pred c------HHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcE
Confidence 1 2467888889999999998877653221 01123567788889999875
No 238
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.72 E-value=2.1e-08 Score=91.18 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------C-CeeEEeCCCCCCC------CCC-cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------P-HIEHVAGDMFQSV------PKG-DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-rv~~~~~d~~~~~------p~~-D~i~ 253 (353)
++.+|||+|||+|.++..+++.. .+++++|. +.+++.++++ + +++++++|+++.. ... |+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999864 39999999 7778776642 2 5999999997722 223 9999
Q ss_pred eccc----------cccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 254 LKWI----------LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 254 ~~~~----------Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+.-. ++. .+....+++++.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8432 111 234578999999999999998776643
No 239
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.68 E-value=2.9e-08 Score=93.69 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=78.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-C--CCC-C-cEEEe--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-S--VPK-G-DAIFL-- 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~--~p~-~-D~i~~-- 254 (353)
..++.+|||+|||+|..+..+++..|+.+++++|. +..++.++++ -+++++.+|+.+ + ++. . |+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 55678999999999999999999998899999998 5556555432 258899999987 3 343 3 99986
Q ss_pred ----ccccccCCch-------HH-------HHHHHHHHHhCCCCCEEEEEeeec
Q 018576 255 ----KWILHDWDDE-------HC-------LKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ----~~~Lh~~~~~-------~~-------~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+++..++. +. .++|+++.+.|+|||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2344443321 11 488999999999999999988654
No 240
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.68 E-value=1.5e-08 Score=95.79 Aligned_cols=102 Identities=8% Similarity=0.042 Sum_probs=77.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . +.++.+|+.+ + .+.. |+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999999865 79999999 6677766542 4 8899999876 2 2334 999861
Q ss_pred -------------cccccCCchHH-------HHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 -------------WILHDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 -------------~~Lh~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.....|+.+.+ .++|+++.+.|||||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 22223333332 689999999999999999877543
No 241
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.66 E-value=2.1e-08 Score=90.01 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=70.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~ 249 (353)
...+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.-
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345555555 667789999999999999999987 468999999 777776653 2689999999987 55444
Q ss_pred cEEEeccccccCCchHHHHHH---------------HHHHHhCCCCC
Q 018576 250 DAIFLKWILHDWDDEHCLKLL---------------KNCYKSVPEDG 281 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L---------------~~~~~~L~pgG 281 (353)
|+|+++... +++.+...++| ..+.+.++|+|
T Consensus 108 D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 999986554 46666566666 34678888876
No 242
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.66 E-value=5.7e-08 Score=92.56 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC-cEEEec--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG-DAIFLK-- 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~-D~i~~~-- 255 (353)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++.++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999885 579999998 6677666542 579999999987 3 3344 999872
Q ss_pred ----ccc-------ccCCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 ----WIL-------HDWDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ----~~L-------h~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.++ +.|+.+. ..++|+++.++|||||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 222 2343222 2478999999999999999887644
No 243
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.63 E-value=4.7e-07 Score=82.53 Aligned_cols=151 Identities=14% Similarity=0.047 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHH----------------CCCCeEEEecchH--HHhhCCCC------CC---eeEEeCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSK----------------YPYIKGINFDQPH--VIEHAPLH------PH---IEHVAGD 241 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~--~~~~a~~~------~r---v~~~~~d 241 (353)
++..+|+|+||++|..+..+... .|..+++.-|+|. --...+.. .+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 35579999999999876654433 4678889999852 11111111 12 2335678
Q ss_pred CCC-CCCCC--cEEEeccccccCCch-------------------------------HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 242 MFQ-SVPKG--DAIFLKWILHDWDDE-------------------------------HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 242 ~~~-~~p~~--D~i~~~~~Lh~~~~~-------------------------------~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|.. .+|.+ |+++++.+||.+++. +...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 887 78876 999999999987641 22356999999999999999988
Q ss_pred eecCCCCCCcc-----ccc-cccccchhhhh---------hCCCCcccCHHHHHHHHHhcC-CceeeE
Q 018576 288 LMLPEVPNTSI-----ESK-SNSHIDVLMMT---------QNPGGKERTKHEFMTLATGAG-FSGIRS 339 (353)
Q Consensus 288 ~~~~~~~~~~~-----~~~-~~~~~~~~~~~---------~~~~g~~~t~~~~~~ll~~aG-f~~v~~ 339 (353)
...+....... ... ...+.++.... ...--..++.+|++.++++.| |++.+.
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 87654311100 000 00111110000 000112468999999999996 466554
No 244
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.61 E-value=1.3e-07 Score=86.91 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=93.0
Q ss_pred CCeEEEEcCCchHHHHHHHHH-----------------CCCCeEEEecch-----------H-HHhhC----CCCCCee-
Q 018576 191 IKQLVDVGGNLGVTLQAITSK-----------------YPYIKGINFDQP-----------H-VIEHA----PLHPHIE- 236 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~rv~- 236 (353)
..+|+|+||++|..+..+... .|.++++.-|+| + ..+.. ....+-.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999998877765 477888999986 1 11111 1111223
Q ss_pred --EEeCCCCC-CCCCC--cEEEeccccccCCchH-------------------------H------------HHHHHHHH
Q 018576 237 --HVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH-------------------------C------------LKLLKNCY 274 (353)
Q Consensus 237 --~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~-------------------------~------------~~~L~~~~ 274 (353)
-+++.|.. .+|.+ |+|+++.+||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777 78876 9999999999876321 1 12377779
Q ss_pred HhCCCCCEEEEEeeecCCC--CCCccccccccccchhh--------hhhC-CCCcccCHHHHHHHHHhcC-CceeeEe
Q 018576 275 KSVPEDGKVIVVELMLPEV--PNTSIESKSNSHIDVLM--------MTQN-PGGKERTKHEFMTLATGAG-FSGIRSD 340 (353)
Q Consensus 275 ~~L~pgG~l~i~e~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~-~~g~~~t~~~~~~ll~~aG-f~~v~~~ 340 (353)
+.|+|||++++.-...+.. ...........+.++.. +..+ .--..++.+|++.+++++| |++.++.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999988876543 11100000011111100 0001 0122368999999999985 7876653
No 245
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.58 E-value=4e-08 Score=92.70 Aligned_cols=103 Identities=11% Similarity=0.109 Sum_probs=76.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .++.++.+|..+ + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998764 79999999 6667665542 568999999865 2 3344 999874
Q ss_pred c------cccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 W------ILHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~------~Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
- ++.. |+.+. ..++|+++.+.|||||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2221 22111 1388999999999999999877654
No 246
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.51 E-value=3.1e-07 Score=79.95 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCCCC--cE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVPKG--DA 251 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~--D~ 251 (353)
...+++.+. ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ ++++. +.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 345666666 667789999999999999999987 5579999999 7788777654 579999999988 66542 55
Q ss_pred EEeccccccCCchHHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L 270 (353)
+++.+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666555443333333
No 247
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.51 E-value=4.4e-08 Score=91.01 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCC------CCC-cEEEec
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSV------PKG-DAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~------p~~-D~i~~~ 255 (353)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.++++ ++++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 568999999 7777776542 45999999987622 223 999985
Q ss_pred cccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-..+..+. .....+++++.+.|+|||.|++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43222211 3356899999999999999998765
No 248
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.51 E-value=6.3e-08 Score=91.81 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=80.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEEecc-hHHHhhCCCC------C--Ce
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-------------PYIKGINFDQ-PHVIEHAPLH------P--HI 235 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--rv 235 (353)
+..+++.+. .....+|+|.|||+|.++..+.+.. +..+++|+|+ +.+++.|+.. . ++
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 334444444 4556799999999999999988764 4568999998 6676665431 2 67
Q ss_pred eEEeCCCCC-CCCCC-cEEEeccccccCCch---------------HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 236 EHVAGDMFQ-SVPKG-DAIFLKWILHDWDDE---------------HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 236 ~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~---------------~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++.++|.+. +.... |+|+++-.++..... .-..++.++.+.|+|||+++++.+
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 899999987 43334 999998766543211 124789999999999999998875
No 249
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.50 E-value=4.6e-08 Score=91.39 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC------CCC-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV------PKG-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~------p~~-D~i~~ 254 (353)
++.+|||+|||+|.++..+++. +..+++++|. +.+++.++++ ++++++.+|+++.. ... |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999986 4458999999 7777766542 27999999987622 223 99998
Q ss_pred ccccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 255 KWILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 255 ~~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
.-..+..+. .....++.++.+.|+|||.+++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 543322211 34568999999999999999887753
No 250
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.48 E-value=1.9e-07 Score=86.74 Aligned_cols=110 Identities=11% Similarity=-0.008 Sum_probs=79.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--------------------------------------IKGIN 219 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (353)
+..++.... +.+...|||.+||+|.++++.+....+ .++++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 344555444 777889999999999999988875433 56999
Q ss_pred ecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccccc-CC-chHHHHHHHHHHHhCCC--CCEEEE
Q 018576 220 FDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD-WD-DEHCLKLLKNCYKSVPE--DGKVIV 285 (353)
Q Consensus 220 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~-~~-~~~~~~~L~~~~~~L~p--gG~l~i 285 (353)
+|. +.+++.|+++ +++++.++|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++ |+.+++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999 7788777642 469999999987 44444 99999844322 11 23455667766666665 899888
Q ss_pred Eee
Q 018576 286 VEL 288 (353)
Q Consensus 286 ~e~ 288 (353)
+..
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 251
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.48 E-value=6.3e-07 Score=79.80 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=63.3
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCCC--
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~-- 249 (353)
...+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++.+|+.+ +++..
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 445666666 667789999999999999999998 568999998 7777776653 789999999998 67653
Q ss_pred cEEEeccccc
Q 018576 250 DAIFLKWILH 259 (353)
Q Consensus 250 D~i~~~~~Lh 259 (353)
|+|+++...+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9998775544
No 252
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.47 E-value=1e-07 Score=86.91 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-cEEEeccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG-DAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh 259 (353)
.++.+|||+|||+|.++.. ++ ...+++++|. +.+++.++++ ++++++.+|+++.. .. |+|++...-+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEECCcHh
Confidence 4578999999999999999 77 4779999999 7777766542 57999999998743 43 9999853211
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
...+++.+.+.|+|||.+++.+..
T Consensus 270 ------~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 ------AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEEee
Confidence 237899999999999999998764
No 253
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.46 E-value=5e-07 Score=78.31 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=72.6
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HHHhhCCCC----CCeeEEeCCCCC-CCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HVIEHAPLH----PHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~rv~~~~~d~~~-~~p 247 (353)
+...+.++.+... +....+|||+|||+|.++...++..+..+++++|+. +........ .++.+...++.. .++
T Consensus 59 aA~KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~ 137 (277)
T 3evf_A 59 GTAKLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLE 137 (277)
T ss_dssp HHHHHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcC
Confidence 3344566666644 677789999999999999998887665566667763 111111111 134444554422 344
Q ss_pred C-C-cEEEeccccc---cCCch-HHHHHHHHHHHhCCCC-CEEEEEeeec
Q 018576 248 K-G-DAIFLKWILH---DWDDE-HCLKLLKNCYKSVPED-GKVIVVELML 290 (353)
Q Consensus 248 ~-~-D~i~~~~~Lh---~~~~~-~~~~~L~~~~~~L~pg-G~l~i~e~~~ 290 (353)
. . |+|++....+ .+.|. ....+|+.+.+.|+|| |.+++ ..+.
T Consensus 138 ~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~ 186 (277)
T 3evf_A 138 PVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA 186 (277)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred CCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence 3 3 9999987665 11122 2235689999999999 99988 4443
No 254
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.46 E-value=5.7e-07 Score=83.25 Aligned_cols=110 Identities=11% Similarity=-0.027 Sum_probs=81.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--------------------------------------IKGIN 219 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (353)
+..++.... +.+...|||.+||+|.++++.+....+ .++++
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 444555444 777889999999999999988865433 56999
Q ss_pred ecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccccc-CC-chHHHHHHHHHHHhCCC--CCEEEE
Q 018576 220 FDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD-WD-DEHCLKLLKNCYKSVPE--DGKVIV 285 (353)
Q Consensus 220 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~-~~-~~~~~~~L~~~~~~L~p--gG~l~i 285 (353)
+|. +.+++.|+++ +++++.++|+.+ +.+.. |+|+++--.+. +. ..+...+.+.+.+.|++ |++++|
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999 7788777652 469999999987 44444 99999854432 22 35567788888888876 999988
Q ss_pred Eee
Q 018576 286 VEL 288 (353)
Q Consensus 286 ~e~ 288 (353)
+..
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 765
No 255
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.46 E-value=7.8e-07 Score=80.70 Aligned_cols=141 Identities=12% Similarity=0.143 Sum_probs=103.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------------------------CCCeeEEeCCC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------------------------HPHIEHVAGDM 242 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~rv~~~~~d~ 242 (353)
+..+|+.+|||.......+...+|+++++-+|.|++++..++ .++++++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 468999999999999999999888999999999988764432 15799999999
Q ss_pred CC-CC---------C-CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc--ch
Q 018576 243 FQ-SV---------P-KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI--DV 308 (353)
Q Consensus 243 ~~-~~---------p-~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~--~~ 308 (353)
.+ .+ . .. .++++-.+|++++.+++.++|+.+.+.. |+|.+++.|.+.+..+.. .+...+ .+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~----~fg~~m~~~l 251 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPND----RFGAIMQSNL 251 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTC----CHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcc----hHHHHHHHHh
Confidence 87 32 1 12 7889999999999999999999999987 788888899887632211 111111 00
Q ss_pred hh-h-hhCCC-CcccCHHHHHHHHHhcCCc
Q 018576 309 LM-M-TQNPG-GKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 309 ~~-~-~~~~~-g~~~t~~~~~~ll~~aGf~ 335 (353)
.. . ....+ ....+.++..+.|.++||+
T Consensus 252 ~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 252 KESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 00 0 00111 2345888999999999997
No 256
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.44 E-value=1.7e-06 Score=81.69 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=68.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-----
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP----- 247 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p----- 247 (353)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ ++++|+.+|+.+.++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence 4444444 556689999999999999999987 679999999 7788776542 579999999987322
Q ss_pred C-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 248 K-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 248 ~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
. . |+|++.---.. +..+++.+.+ ++|++.+++
T Consensus 354 ~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 354 KNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp TTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEE
T ss_pred cCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEE
Confidence 2 3 99998533322 2245555543 678776665
No 257
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.43 E-value=2.4e-07 Score=86.10 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCC---CCCC-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQS---VPKG-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~---~p~~-D~i~~~~~Lh 259 (353)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ -..++.++|+++. .+.. |+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 47899999999999999999973 45999999 7788777653 1235678898762 2333 9999864432
Q ss_pred cCCc-------hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 260 DWDD-------EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 260 ~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
..+. ....++++.+.+.|+|||.|++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 22358899999999999999977653
No 258
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.42 E-value=8.7e-08 Score=89.06 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C--CeeEEeCCCCCCCC------CC-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P--HIEHVAGDMFQSVP------KG-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--rv~~~~~d~~~~~p------~~-D~i 252 (353)
.++.+|||+|||+|.++..+++.. ..+++++|. +.+++.|+++ + +++++++|+++..+ .. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 346799999999999999999853 348999998 7777766542 2 89999999876221 23 999
Q ss_pred Eeccccc-----cCC--chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILH-----DWD--DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh-----~~~--~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++.-... ... .....++++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9853321 111 12345688899999999999988654
No 259
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.40 E-value=5.4e-07 Score=79.31 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=64.6
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---CCCeeEEeCCCCC-CCCC--C-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---HPHIEHVAGDMFQ-SVPK--G-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~--~-D 250 (353)
..+++.+. ..+. +|||||||+|.++..+++.. .+++++|. +.+++.+++ ..+++++++|+.+ ++++ . |
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 45666665 6666 99999999999999999985 68999998 677776654 2689999999987 6653 2 5
Q ss_pred EEEeccccccCCchHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKN 272 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~ 272 (353)
.|+. +.-++.+.+-..++|..
T Consensus 113 ~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EECSSCCHHHHHHHHHH
T ss_pred EEEe-cCcccccHHHHHHHhcC
Confidence 5554 44555666555555544
No 260
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.39 E-value=4.9e-07 Score=83.84 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=80.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--------------------------------------IKGIN 219 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (353)
...++.... +.+..+|||.+||+|.++++++....+ .++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 344555444 777889999999999999998876322 57999
Q ss_pred ecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccccc-CC-chHHHHHHHHHHHhCCC--CCEEEE
Q 018576 220 FDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD-WD-DEHCLKLLKNCYKSVPE--DGKVIV 285 (353)
Q Consensus 220 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~-~~-~~~~~~~L~~~~~~L~p--gG~l~i 285 (353)
+|. +.+++.|+++ +++++.++|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++ |+.+.+
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 999 7888877653 369999999987 44444 99999755432 11 24456777777777776 888888
Q ss_pred Eee
Q 018576 286 VEL 288 (353)
Q Consensus 286 ~e~ 288 (353)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 765
No 261
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.38 E-value=1.4e-07 Score=87.99 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------C-CeeEEeCCCCCCC------CCC-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------P-HIEHVAGDMFQSV------PKG-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-rv~~~~~d~~~~~------p~~-D~i 252 (353)
.++.+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ + +++++.+|+++.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999864 458999999 6777766542 2 7899999987622 223 999
Q ss_pred EeccccccCC-------chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILHDWD-------DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh~~~-------~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++.-.....+ ......++.++.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9864321110 13467899999999999999988664
No 262
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.37 E-value=1.4e-07 Score=85.61 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------------CCeeEEeCCCCCCC------C
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------------PHIEHVAGDMFQSV------P 247 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~~~------p 247 (353)
+++.+|||||||+|..+.++++..+ .+++.+|+ +.+++.++++ +|++++.+|.++.+ .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 4678999999999999999998765 78999999 7777766532 27999999998722 2
Q ss_pred CC-cEEEecccc-c-cCCc--hHHHHHHHHH----HHhCCCCCEEEEEee
Q 018576 248 KG-DAIFLKWIL-H-DWDD--EHCLKLLKNC----YKSVPEDGKVIVVEL 288 (353)
Q Consensus 248 ~~-D~i~~~~~L-h-~~~~--~~~~~~L~~~----~~~L~pgG~l~i~e~ 288 (353)
+. |+|++-..- . .... -....+++.+ +++|+|||.+++.-.
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~ 315 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 315 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcC
Confidence 23 999886432 1 0001 0123555655 999999999987643
No 263
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.32 E-value=5.7e-07 Score=78.41 Aligned_cols=90 Identities=9% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCC---
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPK--- 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~--- 248 (353)
...+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.++++ ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 345666665 6667899999999999999 64 444444999999 7888877654 479999999987 5432
Q ss_pred ---CcEEEeccccccCCchHHHHHH
Q 018576 249 ---GDAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 249 ---~D~i~~~~~Lh~~~~~~~~~~L 270 (353)
.+.++..+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2344444554455444333444
No 264
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.32 E-value=1.6e-06 Score=81.36 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ + ++++.+|+.+..+.. |+|++.-.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35679999999999999999986 458999998 7788777653 3 899999998744434 99998644322
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.. ..+++.+. .|+|+|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEE
T ss_pred hH----HHHHHHHH-hcCCCcEEEEE
Confidence 21 23555554 48999988875
No 265
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.31 E-value=4.1e-07 Score=90.78 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC--C-CCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS--V-PKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~--~-p~~-D~i~~~~ 256 (353)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ ++++++++|+++. . ... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46799999999999999998853 347999999 6777766542 3799999999872 2 223 9999854
Q ss_pred cccc--------CC-chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 257 ILHD--------WD-DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~--------~~-~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.... +. .....++++.+.+.|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2211 11 23456889999999999999996553
No 266
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.30 E-value=2.4e-07 Score=82.00 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=54.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p 247 (353)
..+++.+. ..+..+|||||||+|.++..+++..+. .+++++|+ +.+++.++++ ++++++++|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34566565 667789999999999999999998654 55999999 7788777654 689999999987 554
No 267
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.28 E-value=8.3e-07 Score=78.44 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=76.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCCC---CC-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSVP---KG-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p---~~-D~ 251 (353)
.+++.+||=||+|.|..+.++++..|-.+++.+|+ +.+++.+++ .+|++++.+|...-+. +. |+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 35688999999999999999998777778999999 778876654 3799999999987332 23 99
Q ss_pred EEeccccccCCch---HHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+.-..= ..... --..+++.++++|+|||.++..-..
T Consensus 161 Ii~D~~d-p~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 161 IISDCTD-PIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EEESCCC-CCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEeCCC-cCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 8865321 11111 1247899999999999999986543
No 268
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.26 E-value=7.7e-07 Score=86.77 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=82.7
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhccc---cCCCCeEEEEcCCchHHHH---HHHHHC-CCCeEEEecchHH
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKG---FANIKQLVDVGGNLGVTLQ---AITSKY-PYIKGINFDQPHV 225 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~---~l~~~~-p~~~~~~~D~~~~ 225 (353)
|+-+++++-....|.+++.. .+.+..+. ..+...|+|||||+|-++. ..+++. -++++..++-+.+
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 55567777666666665532 33333321 2234689999999998844 333333 2347889998656
Q ss_pred HhhCCC-------CCCeeEEeCCCCC-CCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 226 IEHAPL-------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 226 ~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
...+++ .++|+++.+|+.+ ..|+. |+|++-..=..+..+-...+|....+.|||||.++
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 555544 2789999999999 78876 99987644333333345578888889999999764
No 269
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.24 E-value=8.7e-07 Score=77.34 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=54.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p 247 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345666665 6677899999999999999999874 68999998 777776654 3689999999988 554
No 270
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.17 E-value=2.2e-06 Score=74.43 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=73.8
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HHHhhCCC----CCCe-eEEeC-CCCCCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HVIEHAPL----HPHI-EHVAG-DMFQSV 246 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~rv-~~~~~-d~~~~~ 246 (353)
+...+.++.+.+. +.+..+|||||||+|.++...++..+..+++++|+. .+...+.. ..++ .+... |+.. +
T Consensus 75 AAfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l 152 (282)
T 3gcz_A 75 GSAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-M 152 (282)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-S
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-c
Confidence 4455677777775 777889999999999999999987776778888872 22112221 1122 23322 4332 3
Q ss_pred C-CC-cEEEeccccc----cCCchHHHHHHHHHHHhCCCC--CEEEEEee
Q 018576 247 P-KG-DAIFLKWILH----DWDDEHCLKLLKNCYKSVPED--GKVIVVEL 288 (353)
Q Consensus 247 p-~~-D~i~~~~~Lh----~~~~~~~~~~L~~~~~~L~pg--G~l~i~e~ 288 (353)
+ .. |+|++-...+ ..+......+|.-+.+.|+|| |.+++--+
T Consensus 153 ~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 153 EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 3 23 9999987766 111112235788889999999 99887443
No 271
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.12 E-value=2.2e-06 Score=76.59 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=60.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-C--CC-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-S--VP- 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~--~p- 247 (353)
...+++.+. ..++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + ++
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345556565 56678999999999999999999999899999999 7788776542 589999999865 2 22
Q ss_pred ---CC-cEEEecc
Q 018576 248 ---KG-DAIFLKW 256 (353)
Q Consensus 248 ---~~-D~i~~~~ 256 (353)
.. |.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 23 8887754
No 272
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=98.06 E-value=7.5e-05 Score=67.44 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=101.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecchHHHhhCC-----------------------------CCCCeeEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQPHVIEHAP-----------------------------LHPHIEHVA 239 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~rv~~~~ 239 (353)
+..+|+-+|||.=.....+... .+++++.-+|.|++++..+ ..++.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999888888775 3678999999998876422 136789999
Q ss_pred CCCCC--CC---------CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc
Q 018576 240 GDMFQ--SV---------PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306 (353)
Q Consensus 240 ~d~~~--~~---------p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (353)
.|+.+ .+ +.. -++++-.+|.+++.+++.++|+.+.+... +|.+++.|.+.+.++ +...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~-------fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR-------FGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH-------HHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH-------HHHHH
Confidence 99976 11 212 68888899999999999999999998875 567777898865431 11111
Q ss_pred chhhhhh---CCC-CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 307 DVLMMTQ---NPG-GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 307 ~~~~~~~---~~~-g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
--++-.. ..+ ....+.++..+.|.++||+.+++..+
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 0000000 001 12357788899999999998877654
No 273
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.05 E-value=6e-06 Score=80.61 Aligned_cols=125 Identities=13% Similarity=0.011 Sum_probs=77.1
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEE
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-------------PYIKGIN 219 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~ 219 (353)
|+-+.+++-....|.+++.. .+.+.+..-.+...|||||||+|-++...+++. ...++++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 44455555555555555432 222222211234689999999999964322211 2348899
Q ss_pred ecchH-HHhhCCC------CCCeeEEeCCCCC-CC------CCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 220 FDQPH-VIEHAPL------HPHIEHVAGDMFQ-SV------PKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 220 ~D~~~-~~~~a~~------~~rv~~~~~d~~~-~~------p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
++-.. .+...+. .++|+++.+|+.+ .. |+. |+|++-..=.....+-...+|..+.+.|+|||.++
T Consensus 452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 99833 2222111 2679999999998 55 444 99988766443333435678888899999999755
No 274
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.02 E-value=6.5e-06 Score=71.81 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-------CCC-----CeEEEecc-h---HHHhhC-----------C------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK-------YPY-----IKGINFDQ-P---HVIEHA-----------P------------ 230 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~------------ 230 (353)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 674 58899986 4 222211 1
Q ss_pred --------CCCCeeEEeCCCCCC---CCC----C-cEEEecc-ccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 231 --------LHPHIEHVAGDMFQS---VPK----G-DAIFLKW-ILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 231 --------~~~rv~~~~~d~~~~---~p~----~-D~i~~~~-~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
...+++++.+|+.+. .+. . |+|++-- .-..-++-.-..+|+.+++.|+|||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 113467889998652 332 3 9998842 21111110124789999999999999884
No 275
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=98.00 E-value=3.8e-05 Score=69.71 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=70.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC-CCCC--cEEEeccccccCCch
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS-VPKG--DAIFLKWILHDWDDE 264 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~p~~--D~i~~~~~Lh~~~~~ 264 (353)
+.++.++||+||++|+++..++++ +.+++++|..++-......++|.++.+|.+.. .+.+ |+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 356789999999999999999987 67999999855555555678999999999983 3333 9999987764 24
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 265 HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 265 ~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
....++.+.......++.++.+..
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 444555555555555555554443
No 276
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.00 E-value=9.6e-06 Score=70.86 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=67.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-h-------HHHhhCCCC-------CCeeEEeCCCCCC---CC--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-P-------HVIEHAPLH-------PHIEHVAGDMFQS---VP-- 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~rv~~~~~d~~~~---~p-- 247 (353)
..+..+|||+|||+|..+..+++. ..+++++|. + .+++.++++ .+++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445679999999999999999996 568999999 7 677766543 4699999998762 33
Q ss_pred -CC-cEEEeccccccCCc------------------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 248 -KG-DAIFLKWILHDWDD------------------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 248 -~~-D~i~~~~~Lh~~~~------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.. |+|++.-.+++-.. .+...+++.+.++.+ .+++|-.+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 33 99999765544211 123455666666654 3666665543
No 277
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.93 E-value=1.8e-05 Score=78.90 Aligned_cols=110 Identities=14% Similarity=0.014 Sum_probs=75.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHH------------------------------------------CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSK------------------------------------------YPYI 215 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------------------------------------------~p~~ 215 (353)
+..++.... +.+...|||.+||+|.++++.+.. .+..
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555444 677789999999999999987764 2346
Q ss_pred eEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCC--C-C-cEEEecccccc-C-CchHHHHHHHHHHHh---C
Q 018576 216 KGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVP--K-G-DAIFLKWILHD-W-DDEHCLKLLKNCYKS---V 277 (353)
Q Consensus 216 ~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p--~-~-D~i~~~~~Lh~-~-~~~~~~~~L~~~~~~---L 277 (353)
+++++|. +.+++.|+.+ +++++.++|+.+ ..| . . |+|+++--... + .+.+...+.+.+.+. +
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 7788777653 458999999986 223 2 3 99999844321 1 233445555554444 4
Q ss_pred CCCCEEEEEee
Q 018576 278 PEDGKVIVVEL 288 (353)
Q Consensus 278 ~pgG~l~i~e~ 288 (353)
.|||+++|+..
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 58999999865
No 278
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.92 E-value=3.6e-06 Score=77.70 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=63.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---CC-------------
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---VP------------- 247 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~p------------- 247 (353)
+.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+. ++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998853 58999998 7777766542 5799999998652 11
Q ss_pred --CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 248 --KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 248 --~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.. |+|++.---. .+..++.+.|+|+|+++.+..
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 13 8887643211 233445566678999887754
No 279
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.90 E-value=1.3e-05 Score=74.07 Aligned_cols=92 Identities=16% Similarity=0.036 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------------------CCeeEEeCCCCCC--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------------------PHIEHVAGDMFQS-- 245 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~rv~~~~~d~~~~-- 245 (353)
.+.+|||+|||+|..++.++++.+..+++++|. +..++.++++ .+++++.+|+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 368999999999999999999988889999998 6666554421 2388999998652
Q ss_pred -CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 246 -VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 246 -~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+.. |+|++.- .. . ...+|..+.+.|+|||.+++.-
T Consensus 127 ~~~~~fD~I~lDP-~~---~--~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG---S--PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS---C--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC---C--HHHHHHHHHHhcCCCCEEEEEe
Confidence 2333 9988542 21 1 2478999999999999777653
No 280
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.90 E-value=3.1e-05 Score=69.46 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=69.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC--C--CC-cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV--P--KG-DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~--p--~~-D~i~ 253 (353)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+++++.+|+.+ +. + .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5567899999999999999999985 5689999998 6666655432 579999999876 22 1 23 8888
Q ss_pred ec------ccccc---------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 254 LK------WILHD---------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~------~~Lh~---------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+. .++.. |+.+. -.++|+++.+.++ ||+|+......
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 62 12221 11111 1357888887776 89888766543
No 281
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.86 E-value=1.1e-05 Score=77.98 Aligned_cols=108 Identities=11% Similarity=-0.001 Sum_probs=75.7
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC------------------CCeEEEecc-hHHHhhCCC------CCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP------------------YIKGINFDQ-PHVIEHAPL------HPH 234 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~r 234 (353)
.+++.+. .....+|+|.+||+|.++..+.+... ..+++|+|+ +.+++.|+. ...
T Consensus 160 ~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 160 TIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 3444444 44567999999999999998876532 247899998 666665542 132
Q ss_pred -----eeEEeCCCCC-C-CCC-C-cEEEeccccccCCc------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 235 -----IEHVAGDMFQ-S-VPK-G-DAIFLKWILHDWDD------------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 235 -----v~~~~~d~~~-~-~p~-~-D~i~~~~~Lh~~~~------------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+.+..+|.+. + .+. . |+|+++-.+..... ..-..++.++.+.|+|||++.++-+
T Consensus 239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 7899999887 3 222 3 99999865543211 1124789999999999999998854
No 282
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.80 E-value=8.9e-05 Score=64.78 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=70.6
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchH-HHhhCCC----CCC-eeEEeC-CCCCCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-VIEHAPL----HPH-IEHVAG-DMFQSV 246 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~r-v~~~~~-d~~~~~ 246 (353)
+...+.++.+. .-+.+..+|||+||++|.++..+++..+-..++++|+.. ....... ..+ +.+..+ |+..-.
T Consensus 66 aa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~ 144 (300)
T 3eld_A 66 GAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMP 144 (300)
T ss_dssp THHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecC
Confidence 33445566666 425677899999999999999999877666788888732 1111110 112 233333 444322
Q ss_pred CCC-cEEEeccccccCCc----h-HHHHHHHHHHHhCCCC-CEEEEEee
Q 018576 247 PKG-DAIFLKWILHDWDD----E-HCLKLLKNCYKSVPED-GKVIVVEL 288 (353)
Q Consensus 247 p~~-D~i~~~~~Lh~~~~----~-~~~~~L~~~~~~L~pg-G~l~i~e~ 288 (353)
+.. |+|++-..-+ -.. . ....+|.-+.+.|+|| |.+++--+
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 233 9999876655 221 1 1246688889999999 99988533
No 283
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.72 E-value=1.1e-05 Score=74.52 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC-------CC-eeEEeCCCCCCC----CCC-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH-------PH-IEHVAGDMFQSV----PKG-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~r-v~~~~~d~~~~~----p~~-D~i~~ 254 (353)
++.+|||++||+|.+++.++.+.++ .+++++|. +..++.++++ ++ ++++.+|..+.. +.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998765 57999998 6667665542 34 999999986622 233 99988
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.- .. . ...++..+.+.|+|||.|++.-
T Consensus 132 DP--~g--~--~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FG--T--PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SS--C--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--Cc--C--HHHHHHHHHHHhCCCCEEEEEe
Confidence 65 11 1 1368899999999999777654
No 284
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.71 E-value=0.00016 Score=61.75 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=68.0
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCe----EEEecchHHHhhCCCCCCe---eEEeC-CCCCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIK----GINFDQPHVIEHAPLHPHI---EHVAG-DMFQS 245 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~rv---~~~~~-d~~~~ 245 (353)
+.+.+.++.+.+- +.+..+|||+||+.|.++...++..+-.. ++++|+ +........+++ .|..+ |+++.
T Consensus 58 AayKL~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~ 135 (269)
T 2px2_A 58 GTAKLRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYK 135 (269)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGS
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCC
Confidence 3445667777763 78889999999999999999988621112 244442 111111111455 55557 99873
Q ss_pred CCCC-cEEEeccccc---cCCchH-HHHHHHHHHHhCCCCC-EEEEEee
Q 018576 246 VPKG-DAIFLKWILH---DWDDEH-CLKLLKNCYKSVPEDG-KVIVVEL 288 (353)
Q Consensus 246 ~p~~-D~i~~~~~Lh---~~~~~~-~~~~L~~~~~~L~pgG-~l~i~e~ 288 (353)
-+.. |+|++-..=. ...|+. ...+|.-+.+.|+||| .+++--+
T Consensus 136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 136 PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 3333 9998765331 111221 2236777789999999 7777433
No 285
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.62 E-value=3.1e-05 Score=74.89 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC---------------CCeEEEecc-hHHHhhCCCC-------CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP---------------YIKGINFDQ-PHVIEHAPLH-------PH 234 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~r 234 (353)
+..+++.+. . ...+|+|.+||+|.++..+.+..+ ..++.|+|+ +.++..|+.. .+
T Consensus 234 v~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 444444444 2 234999999999999998765432 467899998 6666665431 23
Q ss_pred eeEEeCCCCC-C-CCC-C-cEEEecccccc--CCchH-------------------------HHHHHHHHHHhCCCCCEE
Q 018576 235 IEHVAGDMFQ-S-VPK-G-DAIFLKWILHD--WDDEH-------------------------CLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 235 v~~~~~d~~~-~-~p~-~-D~i~~~~~Lh~--~~~~~-------------------------~~~~L~~~~~~L~pgG~l 283 (353)
+.+..+|.+. + .+. . |+|+++--+.. |..+. --.++.++.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 5558888876 3 233 3 99999744432 32110 126899999999999999
Q ss_pred EEEee
Q 018576 284 IVVEL 288 (353)
Q Consensus 284 ~i~e~ 288 (353)
.++-+
T Consensus 392 aiVlP 396 (544)
T 3khk_A 392 ALLLA 396 (544)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88754
No 286
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.61 E-value=0.0002 Score=71.05 Aligned_cols=100 Identities=9% Similarity=-0.004 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC---CCeEEEecc-hHHHhhC--C----C----C--CCeeEEeCCCCCC--CCC-C
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP---YIKGINFDQ-PHVIEHA--P----L----H--PHIEHVAGDMFQS--VPK-G 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~rv~~~~~d~~~~--~p~-~ 249 (353)
....+|||.|||+|.++..+++..+ ..+++|+|+ +.+++.| + . + +...+...|+..+ .+. .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999999886 357899998 6566555 1 1 1 2235556666652 122 3
Q ss_pred -cEEEecccccc-CCchH--------------------------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 -DAIFLKWILHD-WDDEH--------------------------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 -D~i~~~~~Lh~-~~~~~--------------------------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|+++--.-. +.... ...++..+.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999755411 11111 23478889999999999998775
No 287
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.60 E-value=0.00048 Score=57.96 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=75.4
Q ss_pred hhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhh----CCC--CCCeeEEeC-CCCCCCC
Q 018576 175 SLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEH----APL--HPHIEHVAG-DMFQSVP 247 (353)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~--~~rv~~~~~-d~~~~~p 247 (353)
.+.+.++.+.+. +....+|||+||++|.++...+......++.++|+-..-.. .+. -+-|+|+.+ |++.-.|
T Consensus 64 ~~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~ 142 (267)
T 3p8z_A 64 SAKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP 142 (267)
T ss_dssp HHHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC
Confidence 345667777775 77788999999999999998888876668999998322111 111 156999999 9765222
Q ss_pred C-CcEEEeccccccCCchH-----HHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 248 K-GDAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 248 ~-~D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
. .|.|+|--.=.. +.+. ..++|.-+-+.|++ |.++| -.+.|.
T Consensus 143 ~~~DtllcDIgeSs-~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~py 190 (267)
T 3p8z_A 143 EKCDTLLCDIGESS-PSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNPY 190 (267)
T ss_dssp CCCSEEEECCCCCC-SCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCCC
T ss_pred ccccEEEEecCCCC-CChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccCC
Confidence 3 388877644321 1211 23477777889998 66666 444444
No 288
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.53 E-value=0.00055 Score=53.36 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCC---CC-cEEEeccccccCC
Q 018576 189 ANIKQLVDVGGNLG-VTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVP---KG-DAIFLKWILHDWD 262 (353)
Q Consensus 189 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p---~~-D~i~~~~~Lh~~~ 262 (353)
..+.+|||||||.| ..+..|++. .+..++++|+ |..++ ++..|++++.. ++ |+|...+.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP----- 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP----- 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC-----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC-----
Confidence 34679999999999 588888874 3688999998 44333 89999998655 24 99866654
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
..+....+.++.+.. |.-++|.....+
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~~E 125 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLTGE 125 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 344455566666543 577777665443
No 289
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.51 E-value=4.6e-05 Score=69.49 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------------CCeeEEeCCCCCCC---C---C
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------------PHIEHVAGDMFQSV---P---K 248 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~~~---p---~ 248 (353)
++.+||=||+|.|..+.++++. |..+++.+|+ +.+++.+++. +|++++.+|...-+ + +
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999974 5578999999 7787766531 56899999986522 1 1
Q ss_pred C-cEEEecccccc-------CC-chHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHD-------WD-DEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~-------~~-~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|+.-..=.. .. ..-...+++.++++|+|||.++..-
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2 98886532111 00 1113578999999999999998754
No 290
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.49 E-value=3.8e-05 Score=86.50 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEecc-hHHHhhCCCC---CCeeEEeCCCCCC---CCCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY-----IKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQS---VPKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~---~p~~-D~i~~~~ 256 (353)
...+||+||+|+|..+..+++.... .+++..|. +...+.+++. -.+.....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 3579999999999887777666532 35788887 4445555543 1222222233222 2233 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
+||..++ ....|+++++.|+|||++++.|...... +.......-..........+.++|.++|.++||+.
T Consensus 1320 vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e~~~~~~--------~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGD--PAVAVGNMAATLKEGGFLLLHTLLAGHP--------LGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred ccccccc--HHHHHHHHHHhcCCCcEEEEEecccccc--------ccccccccccccccCCcccCHHHHHHHHHhCCCce
Confidence 9997543 4688999999999999999988643110 00000000000000123356778999999999988
Q ss_pred eeEe
Q 018576 337 IRSD 340 (353)
Q Consensus 337 v~~~ 340 (353)
+...
T Consensus 1390 ~~~~ 1393 (2512)
T 2vz8_A 1390 VALK 1393 (2512)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7654
No 291
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.47 E-value=0.0008 Score=58.55 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=74.1
Q ss_pred hhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHH-Hh---hCCCC--CCeeEEeC-CCCCCCC
Q 018576 175 SLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHV-IE---HAPLH--PHIEHVAG-DMFQSVP 247 (353)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~---~a~~~--~rv~~~~~-d~~~~~p 247 (353)
.+.+.++.+.+. +....+||||||++|.++...+....-.++.++|+-.. -+ ..++. .-|.++++ |++.--|
T Consensus 80 ~~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~ 158 (321)
T 3lkz_A 80 TAKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS 158 (321)
T ss_dssp HHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC
Confidence 345667777765 67778999999999999998888776568999998221 00 11111 23888888 8766222
Q ss_pred C-CcEEEeccccccCCchH-----HHHHHHHHHHhCCCC-CEEEEEeeecC
Q 018576 248 K-GDAIFLKWILHDWDDEH-----CLKLLKNCYKSVPED-GKVIVVELMLP 291 (353)
Q Consensus 248 ~-~D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pg-G~l~i~e~~~~ 291 (353)
. .|+|+|--. ---+.+. ..++|.-+-+.|++| |.++| -.+.|
T Consensus 159 ~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVLCP 207 (321)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EESCT
T ss_pred CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEcCC
Confidence 3 388877654 2222222 124677778889988 77776 44444
No 292
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.42 E-value=0.00043 Score=66.80 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHC---CCCeEEEecc-hHHHhhCCC------C--CCeeEEeCCCCC-CCC---C-C-cE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKY---PYIKGINFDQ-PHVIEHAPL------H--PHIEHVAGDMFQ-SVP---K-G-DA 251 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~------~--~rv~~~~~d~~~-~~p---~-~-D~ 251 (353)
...+|+|.+||+|.++..+.+.. +..++.|+|+ +.++..|+. . +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 46799999999999999998885 3578999998 666665543 1 467899999987 433 2 2 99
Q ss_pred EEeccccc-cCCch--------------------HHHHHHHHHHHhCC-CCCEEEEEee
Q 018576 252 IFLKWILH-DWDDE--------------------HCLKLLKNCYKSVP-EDGKVIVVEL 288 (353)
Q Consensus 252 i~~~~~Lh-~~~~~--------------------~~~~~L~~~~~~L~-pgG~l~i~e~ 288 (353)
|+++--+. .|... .--.++.++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99873321 12100 01258999999999 9999988764
No 293
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.41 E-value=0.00016 Score=62.88 Aligned_cols=77 Identities=10% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHhccccCCC--CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHH-------HhhCCC-------C-CCeeEEeCCC
Q 018576 181 ILESYKGFANI--KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHV-------IEHAPL-------H-PHIEHVAGDM 242 (353)
Q Consensus 181 ~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~rv~~~~~d~ 242 (353)
+.+.+. ..++ .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. . .+++++++|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344443 4555 79999999999999999998 458999998 433 333221 1 4699999998
Q ss_pred CCC---CCCC-cEEEecccccc
Q 018576 243 FQS---VPKG-DAIFLKWILHD 260 (353)
Q Consensus 243 ~~~---~p~~-D~i~~~~~Lh~ 260 (353)
.+. +++. |+|++.-.++.
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 762 3334 99999877654
No 294
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.26 E-value=0.0013 Score=58.78 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecchHHHhhCCC---------CCCeeEEeCCCCCCCC----------CC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQPHVIEHAPL---------HPHIEHVAGDMFQSVP----------KG 249 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~p----------~~ 249 (353)
+..+||+||||-=.....+. .| +++++-+|.|.+++..++ .++.+++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 45789999999887755543 24 489999999988875432 3678899999875211 11
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc-chh-hhh-----hCCCCcc-c
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI-DVL-MMT-----QNPGGKE-R 320 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~g~~-~ 320 (353)
-++++-.+||++++++..++|+.+.+.+.||+.|++ |...++.. .. ........ ... ... ....... .
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-EW-REQMQLRFRRVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-HH-HHHHHHHHHHHHC-----------CCTTCC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-ch-hHHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence 588888999999999999999999999999888765 44433321 00 00000000 000 000 0001111 2
Q ss_pred C-HHHHHHHHHhcCCcee
Q 018576 321 T-KHEFMTLATGAGFSGI 337 (353)
Q Consensus 321 t-~~~~~~ll~~aGf~~v 337 (353)
+ .++..++|.+.||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 6789999999999987
No 295
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.25 E-value=0.00016 Score=54.16 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=54.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhC--CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQL--PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNK 109 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~--~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~ 109 (353)
.+..|+..|.+. |+.|+.+||+.+ ++ .+..+++.|+.|+..|+|+.. | .+.|.+|+.+..++...
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~--rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---A--NGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---S--TTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---C--CceEEECchHHHHHHHH
Confidence 356788889775 499999999999 99 999999999999999999985 1 34899999998666543
No 296
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.25 E-value=0.0009 Score=58.82 Aligned_cols=95 Identities=19% Similarity=0.109 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEecch----H-----------------------HHhhCCC-----
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY-----PYIKGINFDQP----H-----------------------VIEHAPL----- 231 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~----~-----------------------~~~~a~~----- 231 (353)
..+.+|||+|+..|..++.++... |+.+++++|.- + .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999998887654 47789999841 0 1111211
Q ss_pred ---CCCeeEEeCCCCCCC---CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 232 ---HPHIEHVAGDMFQSV---PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 232 ---~~rv~~~~~d~~~~~---p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.++|+++.||+.+-+ +.. |+|++-.-.+ +.....|..+...|+|||.+++=+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 268999999997633 322 7777764321 335688999999999999887644
No 297
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.19 E-value=0.00013 Score=67.65 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC----CC-cEEEec
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP----KG-DAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p----~~-D~i~~~ 255 (353)
.+.+|||+|||+|..+..+++. ..+++++|. +.+++.++.+ ++++++++|+.+.++ .. |+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 3689999999999999999887 469999998 7777766432 469999999987322 23 999984
No 298
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.17 E-value=0.00025 Score=49.31 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcC-cHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPT-MLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~-~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
.+-.|++.|... ||.|+.+||+.+|+ .+. .+++.|..|+..|+|.+. ..| .-.|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~-~~g--RP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ-GTT--PPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE-CSS--SCEEEECHHHHT
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec-CCC--CCCeEeCHhHHh
Confidence 456678888887 59999999999999 888 999999999999999976 233 348999988764
No 299
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.12 E-value=0.00059 Score=50.24 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=50.2
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+|.--.++.|+..|.. +|.|+.|||+.+|+ .+..+.+.|+.|...|+|... ++|. ...|.+++
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~-~~g~-~~~y~l~~ 81 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETR-RNIK-QIFYRLTE 81 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEE-CSSS-CCEEEECS
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECc
Confidence 4444566777788866 48999999999999 899999999999999999987 3442 45677664
No 300
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.12 E-value=0.0018 Score=53.97 Aligned_cols=87 Identities=7% Similarity=0.012 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------CCCeeEEeCCCCCC-------------
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------HPHIEHVAGDMFQS------------- 245 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~------------- 245 (353)
.+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 346799999985 56666666 45789999997 555554432 35799999996431
Q ss_pred -----------CC-CC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 246 -----------VP-KG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 246 -----------~p-~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+ .+ |+|++-.-- ....+..+.+.|+|||.|++
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEE
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEE
Confidence 12 12 998877521 23566667899999999854
No 301
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.10 E-value=0.00079 Score=47.20 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=50.5
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
-.+..|++.|...+|+.+.|+.+||+.+|+ ...-+++.|..|...|++... ++ ....|.+.+...
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~--g~-~~~~W~i~~~~~ 74 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE--AG-TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--SS-SSCEEEEC----
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec--CC-CCCeeEEeCcHH
Confidence 346668888888755558999999999999 889999999999999999986 23 357787775443
No 302
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.08 E-value=0.00045 Score=50.29 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=51.8
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
.++..-.+..|+..| . ++.|+.+||+.+++ .+..+.+.|+.|...|++.+. . +.|.+++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~-----~-g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV-----G-ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----T-TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----C-CEEEECCCch
Confidence 344455677889999 5 48999999999999 999999999999999999986 2 4898887654
No 303
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.04 E-value=0.00074 Score=58.87 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC--CCCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL--HPHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~ 244 (353)
..++++.+. ..++..+||.+||.|+.+..++++ +.+++++|. |.+++.+++ .+|+.++.+|+.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456677776 667789999999999999999998 679999999 777765532 2689999998865
No 304
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.03 E-value=0.00036 Score=47.15 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=45.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+..|++.|...+ .|+|..|||+.+|+ +...+.+.|..|...|++... ..++|.++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~-----~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP-----SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC-----CCceEeeC
Confidence 556888887643 48999999999999 999999999999999998764 24677654
No 305
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.97 E-value=0.00044 Score=50.54 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=51.4
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.++..-.++.|+..|.. ++.|+.|||+.+|+ .+..+.+.|+.|...|++.+. ++|. ...|.+++
T Consensus 18 ~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~-~~g~-~~~y~l~~ 81 (98)
T 3jth_A 18 KAMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR-KEAQ-TVYYTLKS 81 (98)
T ss_dssp HHHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-CCTT-CCEEEECC
T ss_pred HHcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECH
Confidence 34445567788888887 48999999999999 999999999999999999987 4442 45576664
No 306
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.94 E-value=0.0051 Score=61.36 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=101.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC--------CCeEEEecchHHHhhCCC------------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP--------YIKGINFDQPHVIEHAPL------------------------------ 231 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 231 (353)
+..+|+-+|||.=.....|...+| +++++-+|.|++++..++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467999999999999999988755 678899998887754321
Q ss_pred CCCeeEEeCCCCC--CC----------CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc
Q 018576 232 HPHIEHVAGDMFQ--SV----------PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS 297 (353)
Q Consensus 232 ~~rv~~~~~d~~~--~~----------p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~ 297 (353)
.++.+++..|+.+ .+ ... -++++--+|.+++.+++.++|+.+.+ + |++.+++.|.+.+..+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0378999999986 11 222 67888899999999999999999885 4 7888999898776533221
Q ss_pred cccccccccchhhhhh---CC-CCcccCHHHHHHHHHhcCCceeeEee
Q 018576 298 IESKSNSHIDVLMMTQ---NP-GGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 298 ~~~~~~~~~~~~~~~~---~~-~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+...+--.+... .. -....+.++..+.|.+.||+.+....
T Consensus 265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 111110011000 00 01234788999999999998776654
No 307
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.90 E-value=0.00042 Score=52.61 Aligned_cols=66 Identities=9% Similarity=0.144 Sum_probs=52.9
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
.+|.--.++.|+..|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|... ++|. ...|++++.+
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~-~~gr-~~~y~l~~~~ 78 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTH-KQGR-VRTCAIEKEP 78 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEECSHH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE-ecCC-EEEEEECHHH
Confidence 44555577888888886 48999999999999 999999999999999999886 3332 4567777543
No 308
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.76 E-value=0.0014 Score=45.56 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=48.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.+..|++.|...+.+.+.|+.|||+.+|+ +...+.+.|..|...|++... ++ .+..|.+++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~--g~-~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE--AG-TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEE--CS-SSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec--CC-CCCceEecC
Confidence 45678888888633347999999999999 899999999999999999986 22 356777653
No 309
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.74 E-value=0.00097 Score=50.90 Aligned_cols=66 Identities=23% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
..+|.--.++.|+..|... ++.|+.+||+.+|+ .+..+.+.|+.|...|++... ++|. ...|.+++
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~-~~gr-~~~y~l~~ 101 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR-KEGK-LALYSLGD 101 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CCEEEESC
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EECC-EEEEEECH
Confidence 3444455678899999854 48999999999999 999999999999999999976 3332 34576664
No 310
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.70 E-value=0.00084 Score=48.89 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=50.7
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++..-.++.|+..|..+ ++.|..|||+.+|+ ++..+.+.|+.|...|++.+. ++|. ...|.+++.
T Consensus 20 ~l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~-~~~r-~~~y~l~~~ 84 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ-RDAQ-RILYSIKNE 84 (99)
T ss_dssp HHCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE-ECSS-CEEEEECCH
T ss_pred HhCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-ecCC-EEEEEEChH
Confidence 33445677788888764 48999999999999 999999999999999999987 3332 345666644
No 311
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.70 E-value=0.00072 Score=53.71 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
..++|.--.++.|+..|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|+.. ++|. ...|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~-~~Gr-~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPR-KDGR-FRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-ecCC-EEEEEEChHHH
Confidence 4566677789999999986 58999999999999 999999999999999999987 3442 45688776543
No 312
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.68 E-value=0.0017 Score=45.54 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=44.3
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCCccceecc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGARRRYSLN 99 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~~~~y~~t 99 (353)
..|++.|... ++.|..|||+.+|+ .+..+++.|+.|...|++.+... .| .+..|.++
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~~~~~g-r~~~y~l~ 60 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRSPLRRG-MATYWFLK 60 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEECCSSS-SSCEEEES
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeccCCC-CcEEEEEC
Confidence 3467777765 48999999999999 99999999999999999996522 22 24455554
No 313
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.63 E-value=0.0017 Score=48.11 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+..-.++.|+..|.. ++.|+.|||+.+|+ .+..+.+.|+.|...|++... ++|. ...|.++
T Consensus 23 l~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~-~~gr-~~~y~l~ 83 (106)
T 1r1u_A 23 LGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK-RQGQ-SMIYSLD 83 (106)
T ss_dssp TCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEES
T ss_pred hCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEEC
Confidence 334466777888875 48999999999999 999999999999999999986 2331 2345555
No 314
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.57 E-value=0.00094 Score=48.69 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=53.9
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec-c-CCCCccceecccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL-D-GSGARRRYSLNSVSK 103 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~-~-~g~~~~~y~~t~~~~ 103 (353)
.++..-.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|++.+.. . ++ ....|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~-r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADR-PRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSS-CEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCc-ceEEEEECHHHH
Confidence 456666788888888754 48999999999999 9999999999999999999752 1 22 234577776654
No 315
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.55 E-value=0.0013 Score=49.86 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.+|..-.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++... ++|. ...|.+++
T Consensus 16 ~aL~~~~r~~IL~~L~~----~~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~-~~gr-~~~y~l~~ 79 (118)
T 2jsc_A 16 RALADPTRCRILVALLD----GVCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVAT-YEGR-QVRYALAD 79 (118)
T ss_dssp HHHSSHHHHHHHHHHHT----TCCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEE-ECSS-SEEEEESS
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-EECC-EEEEEECh
Confidence 34444566778888875 48999999999999 999999999999999999976 3332 34576664
No 316
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.50 E-value=0.0016 Score=48.85 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=48.7
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
-.+..|+..|.. +|.|+.+||+.+|+ ++..+.+.|+.|...|++.+.. +|. ...|.+|+.+.
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~-~gr-~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVK-VGR-EIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE-ETT-EEEEEECSHHH
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEe-cCC-EEEEEechHHH
Confidence 456778888854 48999999999999 9999999999999999999762 231 34477776543
No 317
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.50 E-value=0.00059 Score=50.90 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=46.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.-.++.|+..|.. ++.|+.|||+.+|+ .+..+.+.|+.|...|+|... ++|. ...|.+++
T Consensus 24 ~~~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~-~~gr-~~~y~l~~ 83 (108)
T 2kko_A 24 NGRRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR-REGT-RQYYRIAG 83 (108)
T ss_dssp TSTTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE-EETT-EEEEEESC
T ss_pred CHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECh
Confidence 3345667777775 48999999999999 999999999999999999976 2331 34566553
No 318
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.46 E-value=0.0028 Score=47.01 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-C
Q 018576 13 FAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG-S 90 (353)
Q Consensus 13 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g 90 (353)
+..+++.+.+.|...+| ..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|+|++.... .
T Consensus 4 ~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVIL---------XHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp HHHHHHHHCSTTHHHHH---------HHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred HHHHHHHHcCccHHHHH---------HHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 34455555555554444 34443 489999999999 99 999999999999999999987311 1
Q ss_pred CCccceeccccccccc
Q 018576 91 GARRRYSLNSVSKYYV 106 (353)
Q Consensus 91 ~~~~~y~~t~~~~~l~ 106 (353)
...-.|.+|+.|..+.
T Consensus 67 ~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 67 PPKVEYELSEYGRSLE 82 (107)
T ss_dssp SCEEEEEECTTGGGGH
T ss_pred CCeEEEEECccHHHHH
Confidence 1124588887776544
No 319
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.45 E-value=0.0055 Score=54.71 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=53.1
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC--CCCeeEEeCCCC
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL--HPHIEHVAGDMF 243 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~ 243 (353)
...++++.+. ..++..+||..||.|+.+..+++.. |+.+++++|. +.+++.+++ .+|+.++.+++.
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFS 114 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHH
Confidence 3566777776 6778899999999999999999986 7899999999 778887743 256777777664
No 320
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.31 E-value=0.0081 Score=46.69 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhhhHHHHHHH-----HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhccccee
Q 018576 10 DQSFAYANQLAMGTVLPMAMQ-----AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVE 84 (353)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~-----~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~ 84 (353)
...+..+...+........-. +..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+
T Consensus 10 ~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 10 MPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEe
Confidence 334444444444333333332 35677788889886 48999999999999 9999999999999999999
Q ss_pred eecc--CCCCccceeccccccccc
Q 018576 85 CSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 85 ~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
+... ++. .-.+.+|+.|..+.
T Consensus 83 r~~~~~DrR-~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 83 RERNPSDQR-SFQLFLTDEGLAIH 105 (142)
T ss_dssp C-----------CCEECHHHHHHH
T ss_pred eccCCCCCC-eeeeEECHHHHHHH
Confidence 8631 111 12356666665544
No 321
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.29 E-value=0.0023 Score=48.76 Aligned_cols=62 Identities=16% Similarity=0.323 Sum_probs=48.5
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+..-.++.|+..|.. ++.|+.+||+.+|+ .+..+.+.|+.|...|++... ++|. ...|.+++
T Consensus 43 L~~~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~-~~gr-~~~y~l~~ 104 (122)
T 1r1t_A 43 LADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR-KQGR-HVYYQLQD 104 (122)
T ss_dssp HCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEESS
T ss_pred hCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECh
Confidence 334457778888876 48999999999999 999999999999999999986 2332 34466553
No 322
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.27 E-value=0.0044 Score=47.78 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
-.+...++++.+-|...+|.. |.. |+.++.||++.+ ++ .+..+.+.|+.|+..|+|++....
T Consensus 14 Cpi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 14 SPVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp CHHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CcHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecC
Confidence 356677777777777766654 333 489999999999 99 999999999999999999987411
Q ss_pred -CCCccceeccccccccc
Q 018576 90 -SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 -g~~~~~y~~t~~~~~l~ 106 (353)
..-.-.|.+|+.|..+.
T Consensus 77 ~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 77 QVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSSCEEEEEECTTGGGGH
T ss_pred CCCCeEEEEECHhHHHHH
Confidence 11124699999888766
No 323
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.20 E-value=0.011 Score=51.57 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=60.9
Q ss_pred cCCCCeEEEEcC------CchHHHHHHHHHCCC-CeEEEecchHHHhhCCCCCCeeEEeCCCCCC-CCCC-cEEEeccc-
Q 018576 188 FANIKQLVDVGG------NLGVTLQAITSKYPY-IKGINFDQPHVIEHAPLHPHIEHVAGDMFQS-VPKG-DAIFLKWI- 257 (353)
Q Consensus 188 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~p~~-D~i~~~~~- 257 (353)
.+.+.+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.+|+.+. .... |+|++-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 457789999996 67773 34445676 699999985543221 1 4588997652 2222 88876422
Q ss_pred ------cccC--CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 258 ------LHDW--DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 258 ------Lh~~--~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
-++- +..-++.+|.=+.+.|+|||.+++--
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 1111 12246788888999999999999853
No 324
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.20 E-value=0.0033 Score=43.80 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=48.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
.....|++.|.+. +.|+.|||+.+|+ ....+++.|..|+..|++.+. +| .+-.|.++....
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~--~~-~PP~W~~~~~~~ 77 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSS--DD-IPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEC--SS-SSCEEESCC---
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC--CC-CCCcceeccCcc
Confidence 3456677888864 4999999999999 999999999999999999986 33 366788775543
No 325
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.16 E-value=0.0033 Score=55.22 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=46.7
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.++ .++.|++.+..
T Consensus 32 al~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~-----~~~~Y~LG~~~ 89 (275)
T 3mq0_A 32 AVRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS-----ADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC-----TTSEEEECTHH
T ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCcEEehHHH
Confidence 356888888753 47999999999999 899999999999999999986 14679988543
No 326
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.15 E-value=0.0054 Score=55.81 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=71.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------CCCCeeEEeCCCCC--C-CCCC-c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------LHPHIEHVAGDMFQ--S-VPKG-D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~--~-~p~~-D 250 (353)
..++.+|||+.+|.|+=+..+++..++.+++..|. +.-+...+ ...++.+...|... . .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56678999999999999999999877778899997 33222211 11468888888765 1 2233 8
Q ss_pred EEEec----c----c-------cccCCchHH-------HHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 251 AIFLK----W----I-------LHDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 251 ~i~~~----~----~-------Lh~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.|++- . + .+.+...+. .++|.++.+.|||||+|+-.......
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 77752 1 1 122222221 37899999999999999988876543
No 327
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.15 E-value=0.0027 Score=47.49 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCC--HHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLS--ASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t--~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.+..+.+.+.+.|...+| ..|.. |+.+ +.||++.+ |+ .+..+.+.|+.|...|+|++..
T Consensus 16 ~~~~~l~~l~~~wrl~IL---------~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~- 77 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLII---------SVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRS- 77 (111)
T ss_dssp TTSSTHHHHHSTTHHHHH---------HHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHHcCccHHHHH---------HHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEee-
Confidence 344555666666655544 44554 4777 99999999 99 9999999999999999999862
Q ss_pred CCCCccceeccccccccc
Q 018576 89 GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~ 106 (353)
. ....|.+|+.|..+.
T Consensus 78 ~--r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 78 G--QITTYALTEKGMNVR 93 (111)
T ss_dssp S--SSEEEEECHHHHHHH
T ss_pred c--CcEEEEECccHHHHH
Confidence 2 146799998887654
No 328
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.01 E-value=0.0037 Score=43.26 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+|.|+.|||+.+|+ .+..+++.|+.|+..|++.+.
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 58999999999999 888899999999999999997
No 329
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.99 E-value=0.011 Score=45.37 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=37.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|.++||+.+++ ++..++++|+.|...|++... .| ..+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~--~g-~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSI--RG-AYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEec--CC-CCCceEeCC
Confidence 58999999999999 999999999999999999875 22 135687664
No 330
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.95 E-value=0.017 Score=45.29 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=46.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee----ccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS----LDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~----~~~g~~~~~y~~t~~~~~l~ 106 (353)
+..++..| .. ++.|..+||+.+++ ++..+.+.++.|+..|+|.+. +.++ -.-.+.+|+.|..+.
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~-R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQ-RLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCC-CeeEEEECHhHHHHH
Confidence 44488888 54 58999999999999 999999999999999999972 1121 122356666655444
No 331
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.90 E-value=0.0069 Score=41.98 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=39.4
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.|... |.+|++|||+.+++ .+.-++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 56778776 59999999999999 999999999999999999986
No 332
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.89 E-value=0.0046 Score=46.24 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG- 89 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~- 89 (353)
....+.+.+.+.|...+ +..|.. ++.|..+||+.+ ++ ++..+.+.|+.|+..|+|++....
T Consensus 11 ~~~~~l~~l~~~~~~~I---------L~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~ 73 (112)
T 1z7u_A 11 SINLALSTINGKWKLSL---------MDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNE 73 (112)
T ss_dssp HHHHHHHTTCSTTHHHH---------HHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECC
T ss_pred CHHHHHHHHcCccHHHH---------HHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCC
Confidence 44555555555555444 344554 389999999999 99 999999999999999999987311
Q ss_pred CCCccceeccccccccc
Q 018576 90 SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~ 106 (353)
....-.|.+|+.|..+.
T Consensus 74 d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 74 LPPRVEYTLTPEGYALY 90 (112)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 11123488888776544
No 333
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.85 E-value=0.0044 Score=44.86 Aligned_cols=48 Identities=10% Similarity=0.206 Sum_probs=43.8
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccC
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~ 107 (353)
.+..+||..+++ ++..++..++.|...|++.+. .+.|.+|+.|..++.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999987 456999999987763
No 334
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.83 E-value=0.0037 Score=45.66 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=47.7
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++.--.++.|+..|... ++.|+.|||+.+|+ .+..+.+.|+.|... ++... ++|. ...|++++.
T Consensus 23 aL~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~-~~gr-~~~y~l~~~ 86 (99)
T 2zkz_A 23 TMAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN-RQGL-EIYYSINNP 86 (99)
T ss_dssp HHCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE-EETT-EEEEECCCH
T ss_pred HhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe-EeCc-EEEEEEChH
Confidence 34445667777544433 48999999999999 999999999999999 99876 3442 455766643
No 335
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.79 E-value=0.0066 Score=42.95 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=39.5
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.|... |.+|++|||+.+++ .+.-++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 66778776 59999999999999 999999999999999999987
No 336
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.76 E-value=0.0071 Score=47.61 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=54.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCC
Q 018576 14 AYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGA 92 (353)
Q Consensus 14 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~ 92 (353)
...++.+.+.|...+|. .|.. |+.+..||++.+++ .+..+.+.|+.|+..|+|++... ...
T Consensus 15 ~~~l~~l~~~w~l~IL~---------~L~~----g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~- 76 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVR---------DAFE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS- 76 (146)
T ss_dssp TTTHHHHCSSSHHHHHH---------HHHT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS-
T ss_pred HHHHHHhCCchHHHHHH---------HHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC-
Confidence 34455555555544443 3433 48999999999999 99999999999999999998741 111
Q ss_pred ccceeccccccccc
Q 018576 93 RRRYSLNSVSKYYV 106 (353)
Q Consensus 93 ~~~y~~t~~~~~l~ 106 (353)
.-.|.+|+.|..+.
T Consensus 77 ~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 HQEYRLTDKGRALF 90 (146)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eEEEEECchHHHHH
Confidence 34788888876544
No 337
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.72 E-value=0.013 Score=53.09 Aligned_cols=66 Identities=9% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHhccccC------CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC---CCCCeeEEeCCCCC
Q 018576 178 MSNILESYKGFA------NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP---LHPHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~------~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~rv~~~~~d~~~ 244 (353)
...|++.+. .. +...|||||.|.|.++..|++.....++++++. +..+...+ ..++++++.+|+++
T Consensus 41 ~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 41 YNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 345555554 33 357999999999999999998754457888887 33333222 35789999999976
No 338
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.64 E-value=0.0069 Score=44.84 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
-.+..+.+.+.+.|...+|. .|.. ++.+..||++.++ + ++..+.+.|+.|+..|+|++....
T Consensus 13 c~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecC
Confidence 45566666666666655544 4443 4899999999994 9 999999999999999999987311
Q ss_pred -CCCccceeccccccccc
Q 018576 90 -SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 -g~~~~~y~~t~~~~~l~ 106 (353)
+.-.-.|.+|+.|..+.
T Consensus 76 ~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 76 EVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSSCEEEEEECHHHHTTH
T ss_pred CCCCeeEEEECccHHHHH
Confidence 11124589998876544
No 339
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.62 E-value=0.047 Score=52.44 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=69.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC----C---------CCeEEEecc-hHHHhhCCC------CCCeeE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY----P---------YIKGINFDQ-PHVIEHAPL------HPHIEH 237 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p---------~~~~~~~D~-~~~~~~a~~------~~rv~~ 237 (353)
+.-+++.+. ...+.+|+|-.||+|.++....+.. + ...+.|+|. +.+...++- .+.-++
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 344444444 4556799999999999998766532 1 346899998 555554432 134466
Q ss_pred EeCCCCC-CCC----C-C-cEEEecccccc-CC-------------chHHHHHHHHHHHhCC-------CCCEEEEEee
Q 018576 238 VAGDMFQ-SVP----K-G-DAIFLKWILHD-WD-------------DEHCLKLLKNCYKSVP-------EDGKVIVVEL 288 (353)
Q Consensus 238 ~~~d~~~-~~p----~-~-D~i~~~~~Lh~-~~-------------~~~~~~~L~~~~~~L~-------pgG~l~i~e~ 288 (353)
..+|.+. +.. . . |+|+++--+-. +. ...-..++..+.+.|+ |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788765 322 1 2 99998865521 10 1112356778888886 6999998765
No 340
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.60 E-value=0.0072 Score=46.61 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG- 89 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~- 89 (353)
.+..+++++.+.|...+ +..|.. ++.+..||++.+ |+ .+..+.+.|+.|+..|+|++....
T Consensus 24 ~~~~~l~~l~~~w~l~I---------L~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~ 86 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLI---------LVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPV 86 (131)
T ss_dssp THHHHHHHHHSHHHHHH---------HHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred CHHHHHHHHcCCcHHHH---------HHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCC
Confidence 34455555555555444 444544 489999999999 79 999999999999999999987311
Q ss_pred CCCccceeccccccccc
Q 018576 90 SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~ 106 (353)
..-.-.|.+|+.|..+.
T Consensus 87 d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECccHHHHH
Confidence 11123689998876554
No 341
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.60 E-value=0.0073 Score=51.86 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=47.7
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ .++.|++++...
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~----~~~~Y~lg~~~~ 67 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG----PAGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG----GGCEEEECSHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CCCeEEECHHHH
Confidence 45677777642 37999999999999 9999999999999999999862 246798886543
No 342
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.59 E-value=0.0047 Score=44.91 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=49.7
Q ss_pred HhChhhhhhhcCCCCCCCHHHH----HHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDI----AAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~el----a~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.++..|... ++.|..+| |+.+++ ++..+.+.|+.|+..|++.+.. +. ....|.+|+.|..+.
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~-~~-r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQ-ER-GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEe-cC-CceEEEECHHHHHHH
Confidence 44566677664 48999999 999999 9999999999999999999863 21 145577777776555
No 343
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.55 E-value=0.01 Score=51.14 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=47.1
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+. .++.|.+++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK-----KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC-----CCCcEEECHHH
Confidence 45677777642 37999999999999 999999999999999999985 25679887543
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.53 E-value=0.0073 Score=42.35 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
-+..|++.|...+ +++.|++||++.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 4556888887631 0389999999999 88 8999999999999999999873
No 345
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.42 E-value=0.02 Score=44.79 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=39.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|.++||+.+++ ++..++++|..|...|+|... .|. ++.|.++.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~--rG~-~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSV--RGA-KGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC--SSS-SSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEec--CCC-CCCeeecC
Confidence 48999999999999 999999999999999999865 342 46687764
No 346
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.41 E-value=0.037 Score=43.94 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=50.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++....+ .-.-.+.+|+.|..+.
T Consensus 47 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 455688888876 48999999999999 9999999999999999999873111 0112366776666554
No 347
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.39 E-value=0.027 Score=43.38 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=53.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+... ++ ....|.+|+.|..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~-r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQ-REVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSST-TCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCC-CeeEEEECHHHHHHH
Confidence 456688888875 48999999999999 99999999999999999998731 12 134588888887666
No 348
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.38 E-value=0.0097 Score=46.36 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|..+||+.+++ ++..+.+.|+.|+..|+|.+.+ ...|.+|+.|..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~-----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK-----YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET-----TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee-----CceEEEchhHHHHH
Confidence 48999999999999 9999999999999999999862 46788888876554
No 349
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.28 E-value=0.0053 Score=53.40 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=47.4
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|++.+++ ..+.|++.+..
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~----~~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE----GARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS----SSSEEEECTTH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEcCHHH
Confidence 45777777532 48999999999999 9999999999999999999862 23789987543
No 350
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.26 E-value=0.025 Score=43.46 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.... +.....+.+|+.|..+.
T Consensus 35 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 455677778765 48999999999999 999999999999999999986311 10122366777666544
No 351
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.25 E-value=0.014 Score=44.84 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=50.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+... ++ ..-.+.+|+.|..+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~-r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQ-RETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCT-TCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCC-ceeEEEECHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999998631 11 122366776665544
No 352
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.22 E-value=0.028 Score=44.75 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+|.|.++||+.+++ ++..++++|..|...|+|... .|. ++.|.++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~--rG~-~GGy~La 87 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSI--RGA-HGGYVLN 87 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--CST-TCEEEEC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe--cCC-CCceEec
Confidence 58999999999999 999999999999999999976 342 4668766
No 353
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.20 E-value=0.014 Score=45.44 Aligned_cols=67 Identities=24% Similarity=0.304 Sum_probs=50.9
Q ss_pred HHHhChhhhhhh-cCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDK-AGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|.. . ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ..-.+.+|+.|..+.
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~-R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDG-RRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC-------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCC-CceeeEECHHHHHHH
Confidence 456778888887 5 48999999999999 99999999999999999998731 11 122366776665544
No 354
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.19 E-value=0.0082 Score=52.08 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=48.9
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEEcHHHHHHH
Confidence 45677776532 48999999999999 999999999999999999986 47899987654443
No 355
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.08 E-value=0.041 Score=43.18 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee--ec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC--SL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~--~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++ .+ .++ ..-.+.+|+.|..+.
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~-R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDS-MDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTC-TTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCC-ceeEeEECHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999998 42 111 122477777766544
No 356
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.05 E-value=0.012 Score=45.73 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=52.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.+.. +.-.-.+.+|+.|..+.
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 567788888776 48999999999999 999999999999999999986311 00123477777776654
No 357
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.04 E-value=0.0066 Score=43.81 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=46.1
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCc-HHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM-LDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~-l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++..|...+ .+.|..+||+.+++ ++.. +.+.++.|+..|++...+.+. ....+.+|+.|..+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~dr-R~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSY-RVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEET-TEEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCC-CeEEEEECHhHHHHH
Confidence 455555542 27999999999999 9999 999999999999999543222 123467777666544
No 358
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=94.95 E-value=0.009 Score=52.06 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=47.6
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++ ++.|++++....
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~------~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD------GSAFWLTPRVLE 81 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES------SSEEEECGGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec------CCEEEEcHHHHH
Confidence 45677776432 48999999999999 999999999999999999985 478999865433
No 359
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.95 E-value=0.012 Score=43.22 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=41.8
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+..|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|.+.
T Consensus 20 ~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 20 PSDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456677777665 48999999999999 999999999999999999986
No 360
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.95 E-value=0.023 Score=50.28 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL 231 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (353)
+..++..+. .++..|||++||+|.++..+++. +.+++++|+ +.+++.+++
T Consensus 225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 444554443 45679999999999999998875 568999999 777776654
No 361
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=94.91 E-value=0.012 Score=51.09 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=45.8
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ ++.|.+++..
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~-----~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA-----DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC-----CCeEEecHHH
Confidence 45677775422 48999999999999 9999999999999999999862 2389887543
No 362
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.90 E-value=0.015 Score=43.75 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=43.2
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..-.++.|+..|.. ++.|+.+||+.+++ .+..+.+.|+.|...|++.+.
T Consensus 29 l~~~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 29 LATPSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HCCHHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred hCCHHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 333467778888887 37899999999999 999999999999999999876
No 363
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.89 E-value=0.01 Score=46.13 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..+..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~-R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDR-RISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----C-CSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccC-ceeeeeECHHHHHHH
Confidence 3566678888876 48999999999999 99999999999999999998731 11 123466776666544
No 364
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.89 E-value=0.012 Score=46.01 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=49.3
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ....+.+|+.|..+.
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~-R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDK-RTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCc-ceeEeEECHhHHHHH
Confidence 3566778888876 48999999999999 99999999999999999998731 11 123466666665444
No 365
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.87 E-value=0.041 Score=44.01 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=39.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++.|.++||+.+++ ++..++++|..|...|+++-. .|. ++.|.++..
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~--rG~-~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT--VGK-NGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE--CST-TCEEECCSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee--cCC-CCCeEecCC
Confidence 48999999999999 999999999999999999765 342 566887743
No 366
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.82 E-value=0.016 Score=49.73 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=52.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..|||+.+++ ++..+.|.|+.|...|++++.. ....|.+|+.+..+.
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~----r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG----KDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CccEEEECHHHHHHH
Confidence 456677777655 48999999999999 9999999999999999999862 246799998887664
No 367
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.81 E-value=0.039 Score=43.75 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=50.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~Dr-R~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQ-RKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CC-CSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccC-CeeEeeECHHHHHHH
Confidence 455578888876 48999999999999 99999999999999999998731 11 123466777666554
No 368
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.78 E-value=0.012 Score=45.46 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=50.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+..+ .....+.+|+.|..+.
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 466788888775 48999999999999 9999999999999999999863110 0112366776665443
No 369
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.77 E-value=0.019 Score=44.54 Aligned_cols=66 Identities=6% Similarity=0.024 Sum_probs=49.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|. . ++.|..+||+.+++ ++..+.+.++.|+..|++.+.... +.....+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 4556677777 4 58999999999999 999999999999999999986311 10122366676665444
No 370
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.72 E-value=0.021 Score=44.22 Aligned_cols=67 Identities=7% Similarity=0.111 Sum_probs=50.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.... +.....+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 566678888775 48999999999999 999999999999999999987311 11122466676665444
No 371
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.70 E-value=0.06 Score=41.89 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=49.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+... ++ ....+.+|+.|..+.
T Consensus 43 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~-R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDR-RVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCc-ceeEeEECHhHHHHH
Confidence 355677788775 48999999999999 99999999999999999998631 11 122366776665544
No 372
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.66 E-value=0.022 Score=44.91 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=51.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ ....+.+|+.|..+.
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~-R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDR-RTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTS-SCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCc-ceeEEEECHHHHHHH
Confidence 3566778888775 48999999999999 99999999999999999998631 11 122366676665544
No 373
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.65 E-value=0.05 Score=43.01 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=48.3
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~Dr-R~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDR-RSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCC-CeeEEEECHHHHHHH
Confidence 4457777765 48999999999999 99999999999999999998731 11 122466776666544
No 374
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.63 E-value=0.017 Score=45.55 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=49.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .++ -.-.+.+|+.|..+.
T Consensus 44 ~~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~-R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDK-RRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC-------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcC-CeeEeEECHHHHHHH
Confidence 455677777765 48999999999999 9999999999999999999862 111 123467777666544
No 375
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=94.56 E-value=0.16 Score=44.81 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCCeEEEEcCCchHHHHH----HHHHCCCCe--EEEecchHH-------------H----hhCCC--CCC--eeEEeCCC
Q 018576 190 NIKQLVDVGGNLGVTLQA----ITSKYPYIK--GINFDQPHV-------------I----EHAPL--HPH--IEHVAGDM 242 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~----l~~~~p~~~--~~~~D~~~~-------------~----~~a~~--~~r--v~~~~~d~ 242 (353)
...+|||+|=|||..... +.+..|+.+ ++.++.... . ..... ..+ +++.-+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 457999999999976543 334567754 455553100 0 00000 023 35667777
Q ss_pred CCC---CCCC--cEEEeccccccC-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 243 FQS---VPKG--DAIFLKWILHDW-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 243 ~~~---~p~~--D~i~~~~~Lh~~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
.+. ++.. |++++--.=-.- |+---..+|+++++.++|||.+.- .+
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt--------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS--------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC---------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee---------------------------
Confidence 652 3332 887774311110 111124789999999999988762 10
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
.....++-|+++||++.++...+
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEECC-
T ss_pred ----CcHHHHHHHHHCCCEEEecCCCC
Confidence 12356788999999987765543
No 376
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.56 E-value=0.0095 Score=46.23 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=49.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.+. ++ -.-.+.+|+.|..+.
T Consensus 37 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~-R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDE-RNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCc-ceeeeeEChHHHHHH
Confidence 445566777654 58999999999999 99999999999999999998731 11 123467777776554
No 377
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.55 E-value=0.021 Score=44.31 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHhChhhhh-hhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceecccccccc
Q 018576 33 YELGIFQII-DKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L-~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l 105 (353)
.++.++..| ... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+.. +...-.+.+|+.|..+
T Consensus 38 ~~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~ 105 (146)
T 2fbh_A 38 ARWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVL 105 (146)
T ss_dssp THHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHH
Confidence 345577777 543 58999999999999 999999999999999999987311 0011235566555543
No 378
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.51 E-value=0.02 Score=43.57 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=41.8
Q ss_pred HHhChhhhhhhcCCCCC-CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAK-LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|...+ +| .|+.|||+.+++ +..-+.|.|+.|+..|+|.+.
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 4666788887653 46 899999999999 999999999999999999986
No 379
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.48 E-value=0.063 Score=42.93 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... +...-.+.+|+.|..+.
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 456678888775 48999999999999 999999999999999999986311 11122366776665544
No 380
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=94.48 E-value=0.032 Score=46.41 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=53.0
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC---CCCccceecccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG---SGARRRYSLNSVSK 103 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~---g~~~~~y~~t~~~~ 103 (353)
.+|..-.++.|+..|.. +|.|+.+||+.+++ ++..+.+.|+.|...|+|...... |...-.|.+|+.+.
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 44555567777778866 48999999999999 999999999999999999986321 12245677776544
No 381
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.40 E-value=0.028 Score=43.34 Aligned_cols=69 Identities=7% Similarity=0.184 Sum_probs=49.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+ +++.|..+||+.+++ ++..+.+.++.|+..|+|.+.+.. +.....+.+|+.|..+.
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 3555677787752 127999999999999 999999999999999999987311 10122466676665444
No 382
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.36 E-value=0.02 Score=44.87 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... +...-.+.+|+.|..+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 455678888775 48999999999999 999999999999999999987311 11122466666665443
No 383
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.32 E-value=0.029 Score=37.95 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=48.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.+-.|++.|.++| .|++..|||+.+|+ +..-|.+.|..|-..|.|..+ ..-+|.++
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP-----kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT-----SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEES
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC-----CCceeeCC
Confidence 4567888999876 79999999999999 999999999999999999876 25667765
No 384
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.28 E-value=0.018 Score=45.68 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|++... ++ ....+.+|+.|..+.
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~-R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQ-RSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CC-SSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCC-CeeEEEECHHHHHHH
Confidence 466678888875 48999999999999 99999999999999999998631 11 123366676665443
No 385
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.28 E-value=0.021 Score=44.39 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=53.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceecccccccccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~~~ 108 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ....+.+|+.|..+...
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~-R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDE-RSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCT-TSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCC-CeeEEEECHhHHHHHHH
Confidence 566677888775 48999999999999 99999999999999999998631 11 12347788888766643
No 386
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.26 E-value=0.015 Score=41.92 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=41.0
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.|..+||+.+++ ++..+.++++.|+..|+|... .++. ...|.+|+.|..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d~R-~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LEGR-TKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CCCC-eEEEEEChhHHHHH
Confidence 4899999999999 999999999999999999433 2221 23588887776554
No 387
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.26 E-value=0.022 Score=43.80 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+... ...-.+.+|+.|..+.
T Consensus 30 ~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 455677778775 48999999999999 9999999999999999999863110 0012266666665444
No 388
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.26 E-value=0.018 Score=45.09 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|...+ +++|..+||+.+++ ++..+.+.++.|+..|+|++.+... .-.-.+.+|+.|..+.
T Consensus 39 ~~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 39 VRSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 35666777786543 47899999999999 9999999999999999999863110 0011266776666544
No 389
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.24 E-value=0.014 Score=45.85 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=49.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ -.-.+.+|+.|..+.
T Consensus 41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~-R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDK-RQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC----------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCc-ceeeeeECHHHHHHH
Confidence 3566778888775 48999999999999 99999999999999999998731 11 122366666665443
No 390
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.20 E-value=0.021 Score=45.29 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .++ ....|.+|+.|..+.
T Consensus 50 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~-R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDR-RRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCC-CeeEEEECHHHHHHH
Confidence 456678888875 48999999999999 9999999999999999999862 111 123466666665444
No 391
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.18 E-value=0.025 Score=43.74 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYY 105 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l 105 (353)
++.|..+||+.+++ ++..+.+.|+.|+..|+|.+. ...|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK------EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec------CCeEEEChhHHHH
Confidence 48999999999999 999999999999999999986 2568888777644
No 392
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.16 E-value=0.02 Score=44.16 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+. ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ -.-.+.+|+.|..+.
T Consensus 32 ~~~~vL~~l~~~~~-~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~-R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQ-DGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDT-RRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTT-TCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCC-CeeeeEECHHHHHHH
Confidence 45667777877521 38999999999999 99999999999999999998731 11 122356666666554
No 393
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.16 E-value=0.023 Score=44.67 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=52.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceecccccccccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~~~ 108 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|++... ++ ..-.+.+|+.|..+...
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~-R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDE-RQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccC-CeeEeeECHHHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999998631 11 12247788888766543
No 394
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.15 E-value=0.022 Score=44.45 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=42.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+. ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 42 ~q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~Dr-R~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQE-SGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNA-RQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTT-TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC---------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCc-hhheeeECHHHHHHH
Confidence 44567777776421 38999999999999 99999999999999999998731 11 112355665555444
No 395
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.14 E-value=0.026 Score=43.84 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=47.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..+..|+..|... +.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ..-.+.+|+.|..+.
T Consensus 38 ~~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~-R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDA-RVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCC-ceeEEEECHhHHHHH
Confidence 3566778888774 4999999999999 99999999999999999998631 21 123466666555443
No 396
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.14 E-value=0.022 Score=44.10 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+.... +...-.+.+|+.|..+.
T Consensus 30 ~~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 30 GQYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp THHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 345577778775 48999999999999 999999999999999999987311 11122366776665444
No 397
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.12 E-value=0.052 Score=42.70 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
...++++...+... .. ++.|+++||+.+++ ++..++++|..|...|+|... .| .+.|.++..
T Consensus 13 ~~yAl~~L~~La~~---~~----~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~--rG--~GGy~L~~~ 74 (149)
T 1ylf_A 13 FSIAVHILSILKNN---PS----SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN--RG--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHHS---CG----GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred HHHHHHHHHHHHhC---CC----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEc--cC--CCceEeCCC
Confidence 33456666555432 12 48999999999999 999999999999999999875 23 466877644
No 398
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=94.08 E-value=0.042 Score=43.10 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=53.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeeccC------CCCccceecccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLDG------SGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~~------g~~~~~y~~t~~~~~l 105 (353)
.+..|+..|...+ .+..|+++|++.++ + ...-|.+.|+.|+..|+|++...+ |.-...|.+|+.|...
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 6677777776642 23689999999999 8 999999999999999999976311 1112369999998866
Q ss_pred cC
Q 018576 106 VP 107 (353)
Q Consensus 106 ~~ 107 (353)
+.
T Consensus 105 l~ 106 (151)
T 3u1d_A 105 LR 106 (151)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 399
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.08 E-value=0.017 Score=44.76 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=50.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++..... .....|.+|+.|..+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 466678888775 48999999999999 9999999999999999999863110 0012366776666544
No 400
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.07 E-value=0.029 Score=40.39 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~~~~y~~t~~~~~l~ 106 (353)
++.+..+||+.+++ +...+.|.|..|...|+|..... +| .+...+|+.|..++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~--R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADG--RGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTS--CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCC--ceeEEECHHHHHHH
Confidence 58899999999999 99999999999999999998742 22 23356776665443
No 401
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.06 E-value=0.095 Score=40.98 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=49.0
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... +...-.+.+|+.|..+.
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 45577888775 48999999999999 999999999999999999987311 00112366666655443
No 402
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.05 E-value=0.016 Score=44.83 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+... .....+.+|+.|..+.
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 566778888876 48999999999999 9999999999999999999863110 0012366666665444
No 403
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.89 E-value=0.02 Score=43.70 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|.+.+ .++. .-.+.+|+.|..+.
T Consensus 38 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R-~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDER-TVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSC-CCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCC-eeEEEECHHHHHHH
Confidence 4556777777641 138999999999999 9999999999999999999863 1111 22356666665444
No 404
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.84 E-value=0.026 Score=45.21 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|...+ ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 54 ~q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~Dr-R~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDR-RAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC---------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCC-CeeEEEECHHHHHHH
Confidence 5666788887622 47999999999999 99999999999999999998731 11 123466776666544
No 405
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.76 E-value=0.017 Score=49.14 Aligned_cols=72 Identities=8% Similarity=0.159 Sum_probs=54.7
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCC----Cccceecccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSG----ARRRYSLNSV 101 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~----~~~~y~~t~~ 101 (353)
..+|..-.++.|+..|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|....+.|. -...|++++.
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccc
Confidence 345555677788888886 48999999999999 99999999999999999998312221 0235888876
Q ss_pred cccc
Q 018576 102 SKYY 105 (353)
Q Consensus 102 ~~~l 105 (353)
+...
T Consensus 78 ~~~~ 81 (232)
T 2qlz_A 78 KSYV 81 (232)
T ss_dssp EEEE
T ss_pred hhhH
Confidence 6543
No 406
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.76 E-value=0.031 Score=44.17 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=48.2
Q ss_pred HHhChhhhhh-hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIID-KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|. .. ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ ..-.+.+|+.|..+.
T Consensus 48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~-R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNP---DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDR-RSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCT---TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC---------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCC-CeEEEEEChhHHHHH
Confidence 4566888884 43 48999999999999 99999999999999999998631 11 112366666665444
No 407
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.70 E-value=0.058 Score=42.52 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=45.5
Q ss_pred hhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 38 FQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 38 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
...|..+ ++.|..+||+.+++ ++..+++.|+.|+..|+|.+.+ +..+.+|+.|..+.
T Consensus 46 ~~~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~-----~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 46 SDLIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP-----WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET-----TTEEEECHHHHHHH
T ss_pred HHHHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec-----CCceEEChhHHHHH
Confidence 3356554 47899999999999 9999999999999999999862 35577887765443
No 408
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.62 E-value=0.054 Score=42.63 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
.++.++..|...+ ++.|..+||+.+++ ++..+.++++.|+..|+|++.+ +. .+. ...+|+.|..+.
T Consensus 32 ~q~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~-~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 32 THWVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SA-NDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CS-SCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CC-CCCcchhhhcCHHHHHHH
Confidence 3445667776543 36788999999999 9999999999999999999874 21 122 356666665544
No 409
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.58 E-value=0.03 Score=45.71 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=53.8
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSV 101 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~ 101 (353)
.++|.--.++.|+..|.. +|.|+.+|++.++ + ....+.+.|+.|...|+|+...+ .|.....|++++.
T Consensus 17 ~~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~ 88 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQ 88 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTT
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccc
Confidence 344555588899999987 5999999999996 8 78899999999999999986531 2222356887765
Q ss_pred ccc
Q 018576 102 SKY 104 (353)
Q Consensus 102 ~~~ 104 (353)
+..
T Consensus 89 ~~~ 91 (182)
T 4g6q_A 89 AGD 91 (182)
T ss_dssp TTT
T ss_pred ccc
Confidence 543
No 410
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.57 E-value=0.047 Score=39.11 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=50.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHH-hCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAA-QLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~-~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~ 107 (353)
.++.|+-.|... ++.|+.+||+ .+++ +...+.|-++.|...|+|+.+ | ++ ..+|+.|..++.
T Consensus 17 ~QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~---~--~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 17 KTATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS---G--DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE---T--TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC---C--CC-eeeCHhHHHHHH
Confidence 355667778776 4899999999 9999 999999999999999999932 2 33 888888876664
No 411
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.49 E-value=0.058 Score=39.84 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=39.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.++.|+..+...| .+.|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 19 ~~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455666664432 37999999999999 999999999999999999875
No 412
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.14 E-value=0.12 Score=38.70 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=54.1
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC--------CCCCCCc-CcHHHHHHHHhcccceeeecc--CCCCccce
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP--------TKNKDAP-TMLDRILRLLASYSVVECSLD--GSGARRRY 96 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~--------~~~~~~~-~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y 96 (353)
++.-..++-|+..|.. +|.+..+|++.+. + .+ ..+.+.|+-|+..|+|+.... +|.....|
T Consensus 9 ~~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y 80 (118)
T 2esh_A 9 FRGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIY 80 (118)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEE
T ss_pred cccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEE
Confidence 3444566777888877 4899999999983 6 88 999999999999999988732 23233468
Q ss_pred eccccccccc
Q 018576 97 SLNSVSKYYV 106 (353)
Q Consensus 97 ~~t~~~~~l~ 106 (353)
.+|+.|...+
T Consensus 81 ~LT~~G~~~l 90 (118)
T 2esh_A 81 RITPQGKLYL 90 (118)
T ss_dssp EECHHHHHHH
T ss_pred EEChHHHHHH
Confidence 9998887654
No 413
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=93.11 E-value=0.13 Score=39.72 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=50.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
.++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|+|++.+ +. .+. .+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~---~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~-~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE---PR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DS-KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS---CE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CC-CCCceEEEEECHHHHHHH
Confidence 456788888885 35 99999999999 9999999999999999999873 11 111 377777776554
No 414
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.09 E-value=0.045 Score=44.86 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=53.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceecccccccccC
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~~ 107 (353)
+..+..++..|...+ .++.|..+||+.+++ ++..+.+.++.|+..|+|++.... ..-.-.+.+|+.|..+..
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 445677788887521 148999999999999 999999999999999999987311 101234778888776553
No 415
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=92.93 E-value=0.039 Score=38.38 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=40.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|+.||++.++...+..+.-+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 455677777764 489999999999630001788999999999999999987
No 416
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=92.81 E-value=0.19 Score=37.59 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=53.3
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC------CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceec
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQL------PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSL 98 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~ 98 (353)
.++-..++=|+..|.. +|.+--+|++.+ ++ ++.-+...|+-|+..|+|+.... +|.....|++
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 4444556666777777 489999999997 67 89999999999999999998631 2333456999
Q ss_pred cccccccc
Q 018576 99 NSVSKYYV 106 (353)
Q Consensus 99 t~~~~~l~ 106 (353)
|+.|+..+
T Consensus 79 T~~G~~~l 86 (117)
T 4esf_A 79 NEAGRQEL 86 (117)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99888665
No 417
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.80 E-value=0.053 Score=45.50 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=43.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|..+||+.+++ ++..+.+.++.|...|++++.+ ...+.+|+.|..+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK-----KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET-----TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec-----CCCeEECHHHHHHH
Confidence 58999999999999 9999999999999999999972 45688888877554
No 418
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.73 E-value=0.041 Score=45.91 Aligned_cols=66 Identities=15% Similarity=-0.022 Sum_probs=50.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+... ++ -.-.+.+|+.|..+.
T Consensus 49 ~q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~Dr-R~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDK-RNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC-------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCC-ceEEEEECHHHHHHH
Confidence 455677888775 48999999999999 99999999999999999998731 11 112467777776554
No 419
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=92.65 E-value=0.026 Score=42.58 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=39.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCC----CCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLP----TKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|+..|... +|.|..+||+.++ + .+..+.++|+.|+..|+|.+.
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 44566666654 4899999999999 6 689999999999999999987
No 420
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.62 E-value=0.079 Score=41.54 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 355678888775 48999999999999 999999999999999999764
No 421
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=92.53 E-value=0.24 Score=36.99 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC--------CCCCCCCcCcHHHHHHHHhcccceeeec---cCCCCccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL--------PTKNKDAPTMLDRILRLLASYSVVECSL---DGSGARRR 95 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~r~L~~L~~~g~l~~~~---~~g~~~~~ 95 (353)
..++-..++=|+..|.. +|.+--+|.+.+ ++ ++.-+.+.|+-|+..|+|+... .+|.....
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~ 78 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKY 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEE
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceE
Confidence 34455566667778887 489999999887 56 8999999999999999999863 12333456
Q ss_pred eeccccccccc
Q 018576 96 YSLNSVSKYYV 106 (353)
Q Consensus 96 y~~t~~~~~l~ 106 (353)
|.+|+.|+..+
T Consensus 79 Y~LT~~G~~~l 89 (116)
T 3f8b_A 79 YRLTEIGHENM 89 (116)
T ss_dssp EEECHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99998887655
No 422
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.53 E-value=0.085 Score=41.10 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=40.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|++.|... ++.|..|||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 7 d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 45678888875 48999999999999 999999999999999999864
No 423
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=92.40 E-value=0.1 Score=42.88 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.++....+..|+..|.. ++.|..|||+.+|+ .+..+.+.|+.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34445667788889985 48999999999999 999999999999999999986
No 424
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.36 E-value=0.058 Score=43.08 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
.++.|+..|...+. ++.|..+||+.+++ ++..+.++++.|+..|+|++.. +. .+. .+.+|+.|..+.
T Consensus 47 ~q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~-~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHP-EGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KP-ENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CC-CCCCeeEeEECHHHHHHH
Confidence 45667777876411 48999999999999 9999999999999999999873 11 122 366676666544
No 425
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=92.36 E-value=0.07 Score=41.83 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 356788888875 48999999999999 999999999999999999863
No 426
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=92.35 E-value=0.17 Score=39.49 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=36.9
Q ss_pred CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 51 t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
|+++||+..++ ++..++++|..|...|+|... .| .+.|.++..
T Consensus 25 s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~--rG--~GGy~Lar~ 67 (145)
T 1xd7_A 25 SSEIIADSVNT----NPVVVRRMISLLKKADILTSR--AG--VPGASLKKD 67 (145)
T ss_dssp CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC--SS--SSSCEESSC
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEee--cC--CCCceecCC
Confidence 99999999999 999999999999999999875 23 456777643
No 427
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=92.24 E-value=0.15 Score=39.70 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=47.8
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ ...+|.++
T Consensus 21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGD-ASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTT-SCCEEEEC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCC-CceEEECC
Confidence 445667889997643 589999999999 56 8889999999999999999874222 24567654
No 428
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.14 E-value=0.098 Score=41.62 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..|||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 355678888875 48999999999999 999999999999999999864
No 429
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=91.95 E-value=0.073 Score=38.63 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|-+. ++.|+.||++.++.+.+..+.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 356678888765 489999999999751111578899999999999999987
No 430
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.85 E-value=0.16 Score=38.86 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=48.3
Q ss_pred HHHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceec
Q 018576 30 QAVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSL 98 (353)
Q Consensus 30 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~ 98 (353)
.+.-+.-|++.|...+ ++.|++||.+.+ ++ +..-+-|.|+.|+..|++.+..-++ ...+|..
T Consensus 9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~-~~~~y~~ 75 (131)
T 2o03_A 9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDT-GESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTT-SCEEEEE
T ss_pred CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCC-CceEEEe
Confidence 3556777888887643 589999999999 67 8889999999999999999874222 2456754
No 431
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.81 E-value=0.12 Score=39.93 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=38.7
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..++..|.... +|.|..+||+.+|+ ++..+.+.|+.|+..|++++.
T Consensus 28 ~~~il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 28 VGAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334566664211 48999999999999 999999999999999999986
No 432
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=91.76 E-value=0.12 Score=40.52 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=41.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.++.|...|++.+.
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455688888875 58999999999999 999999999999999999864
No 433
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.73 E-value=0.057 Score=43.77 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|...++.++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ ..-.+.+|+.|..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~Dr-R~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDR-RSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC--------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCC-CeeEEEECHHHHHHH
Confidence 45667888887531012999999999999 99999999999999999998631 11 112366666665444
No 434
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=91.61 E-value=0.054 Score=42.44 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=34.8
Q ss_pred HhChhhhhhhcCC--CCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGP--GAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~--~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.++..|...++ ++++|..+||+.+++ ++..+.++++.|+..|+|...
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 4445666654321 247899999999999 999999999999999999654
No 435
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=91.59 E-value=0.11 Score=40.84 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=41.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|.+. ++.|..+||+.+|+ .+..+.+.++.|...|++...
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence 345678888875 48999999999999 999999999999999999863
No 436
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.55 E-value=0.093 Score=41.22 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=41.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.++.|...|++.+.
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 355678888875 48999999999999 999999999999999999863
No 437
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.23 E-value=0.14 Score=41.22 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=41.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 455688888875 48999999999999 999999999999999999754
No 438
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.23 E-value=0.12 Score=37.61 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.|..|||+.+|+ ++.-+.+.|+.|...|++.+.
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 48999999999999 999999999999999999987
No 439
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.17 E-value=0.11 Score=41.33 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|++.|.+. ++.|..+||+.+|+ .+..+++-++.|...|++...
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence 456788899876 59999999999999 999999999999999999853
No 440
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.11 E-value=0.12 Score=41.55 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=42.3
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+..|+..|... ++.|..|||+.+|+ .+..+.+.|+.|...|++...
T Consensus 27 ~~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 27 EIDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 3566788888875 48999999999999 999999999999999999863
No 441
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.05 E-value=0.11 Score=40.10 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=40.0
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence 45677778765 48999999999999 999999999999999999754
No 442
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=90.93 E-value=0.17 Score=39.45 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=52.5
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhC--------CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCcccee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQL--------PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYS 97 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~ 97 (353)
+.--.++-|+..|.. +|.+..+|++.+ ++ .+..+.+.|+-|+..|+|+.... ++.....|.
T Consensus 38 ~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 38 IRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp GGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred hcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 344466777788876 489999988887 57 89999999999999999988631 222234689
Q ss_pred ccccccccc
Q 018576 98 LNSVSKYYV 106 (353)
Q Consensus 98 ~t~~~~~l~ 106 (353)
+|+.|..++
T Consensus 110 LT~~G~~~l 118 (145)
T 1xma_A 110 ITPEGIKYY 118 (145)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 998887654
No 443
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=90.91 E-value=0.057 Score=42.23 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=45.8
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
+.++..|.... ++++|..+||+.+++ ++..+.++++.|+..|+|++.+ +. .+. ...+|+.|..+.
T Consensus 38 ~~vL~~L~~~~-~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~-~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSK-SGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NP-NDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSG-GGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cC-CcCceeEEEECHHHHHHH
Confidence 34555554211 148999999999999 9999999999999999999874 11 122 256666665443
No 444
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=90.49 E-value=0.28 Score=36.61 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=53.6
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC------CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCcccee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL------PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYS 97 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~ 97 (353)
..++-..++=|+..|.. +|.+--+|++.+ ++ ++.-+...|+-|+..|+|+.... +|.....|+
T Consensus 8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 79 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR 79 (116)
T ss_dssp HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 34444456667777877 489999999997 57 89999999999999999997631 233344699
Q ss_pred ccccccccc
Q 018576 98 LNSVSKYYV 106 (353)
Q Consensus 98 ~t~~~~~l~ 106 (353)
+|+.|+..+
T Consensus 80 lT~~G~~~l 88 (116)
T 3hhh_A 80 LTSSGEAEL 88 (116)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 998888655
No 445
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.38 E-value=0.19 Score=36.97 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=50.4
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHh----CCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQ----LPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKY 104 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~----~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~ 104 (353)
-..++-|+..|.. +|.+--+|++. +++ ++..+.+.|+-|+..|+|+.... +|.....|.+|+.|..
T Consensus 8 g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~ 79 (108)
T 3l7w_A 8 LLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEK 79 (108)
T ss_dssp HHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHH
Confidence 3455667777877 47888787777 478 89999999999999999998631 2222235889988876
Q ss_pred cc
Q 018576 105 YV 106 (353)
Q Consensus 105 l~ 106 (353)
.+
T Consensus 80 ~l 81 (108)
T 3l7w_A 80 HL 81 (108)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 446
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=90.32 E-value=1.5 Score=40.04 Aligned_cols=62 Identities=10% Similarity=0.178 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-------CCCeEEEecchHHH
Q 018576 160 PRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-------PYIKGINFDQPHVI 226 (353)
Q Consensus 160 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 226 (353)
|+....|.+.+..+.. ....... .+.+.+|+|+|+|+|.++..+++.. ..+++..++.+..+
T Consensus 55 peis~~FGe~la~~~~----~~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 55 PEISQMFGELLGLWSA----SVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp HHHCHHHHHHHHHHHH----HHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CchHHHHHHHHHHHHH----HHHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 5555666654433211 1112222 4456789999999999999887642 34689999984433
No 447
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=90.14 E-value=0.16 Score=38.05 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC------CCCCCCcCcHHHHHHHHhcccceeeecc---CCCCcccee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP------TKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYS 97 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~ 97 (353)
..+.-..++-|+..|.. +|.+.-+|++.+. + .+..+...|+-|+..|+|+.... +|.....|.
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 45555667778888887 4899999999886 7 78899999999999999997631 222334699
Q ss_pred cccccccccC
Q 018576 98 LNSVSKYYVP 107 (353)
Q Consensus 98 ~t~~~~~l~~ 107 (353)
+|+.|...+.
T Consensus 81 lT~~G~~~l~ 90 (117)
T 3elk_A 81 ITDAGKKFLC 90 (117)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9999886553
No 448
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=90.06 E-value=1.5 Score=38.81 Aligned_cols=90 Identities=17% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCeEEEEcCCc--hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCCcEEEeccccccCCchHH
Q 018576 191 IKQLVDVGGNL--GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKGDAIFLKWILHDWDDEHC 266 (353)
Q Consensus 191 ~~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~~~~ 266 (353)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.....|..+ .....|+|++.- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999883 345555555533348999998 5555555433222222233332 233449988763 34456
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 018576 267 LKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 267 ~~~L~~~~~~L~pgG~l~i 285 (353)
..+++++...|+||..++-
T Consensus 108 ~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhccCCCcEEEE
Confidence 7889999999999875543
No 449
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=89.96 E-value=0.51 Score=29.76 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.++|+.|+|+..+. +-+..+.-|+.|-+.|-+.+. ..+|++.+
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR------sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR------SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------CCEEEECC
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh------ccccccCc
Confidence 47999999999999 888888899999999999986 57888764
No 450
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=89.82 E-value=0.65 Score=40.39 Aligned_cols=97 Identities=8% Similarity=-0.063 Sum_probs=68.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCC----CCC--C-cEEEecccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQS----VPK--G-DAIFLKWIL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~----~p~--~-D~i~~~~~L 258 (353)
...+||+=+|||.+++++++ +.-+++.+|. +..++..++ .++++++..|.+.. .|. . |+|++---.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 56789999999999999998 4578999998 555544443 36799999997651 232 3 999887665
Q ss_pred ccCCchHHHHHHHHHHHh--CCCCCEEEEEeeecC
Q 018576 259 HDWDDEHCLKLLKNCYKS--VPEDGKVIVVELMLP 291 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~--L~pgG~l~i~e~~~~ 291 (353)
.. .++..+++..+.+. +.|+|.++|.=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 42 23456667666664 358898888776654
No 451
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.60 E-value=0.37 Score=34.89 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=40.8
Q ss_pred HHHHHHHhChhh-hhhhcCCCCCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 28 AMQAVYELGIFQ-IIDKAGPGAKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 28 ~l~~a~~lglf~-~L~~~~~~~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+...++..|.+ .+..+ ..+ |..+||+.+|+ ...-+++.|+.|...|++...
T Consensus 15 ~l~~~i~~~I~~~~l~~g---~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPG---DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHTTTTSCCTT---SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhCCCCCc---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 344455556665 34332 356 99999999999 999999999999999999986
No 452
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.52 E-value=0.23 Score=40.89 Aligned_cols=35 Identities=20% Similarity=0.085 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|.|..|||+.+|+ ....+.+.|+.|+..|++.+.
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 48899999999999 677899999999999999976
No 453
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=89.33 E-value=0.65 Score=31.44 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=40.0
Q ss_pred hhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 39 QIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 39 ~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
..|..+ +..|+.+||+++|+ ...-+.|.|-.|...|.|...+ | ..-.|..+
T Consensus 22 ~~L~~~---~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~--~-~PP~W~~~ 72 (75)
T 1sfu_A 22 LSLNTN---DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP--S-NPPKWFKN 72 (75)
T ss_dssp HTSCTT---CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--C-SSCEEEEC
T ss_pred HhCCCC---cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC--C-CCCCccCC
Confidence 355553 35999999999999 8889999999999999999872 2 24555544
No 454
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=89.29 E-value=0.23 Score=37.78 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|.++||+.+++ ++.-+.+.|+.|+..|++++.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3699999999999 999999999999999999986
No 455
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=89.25 E-value=0.24 Score=35.27 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=40.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.|+..|...+. .++|..+|++.+++ +..-+.+.|+.|+..|++.+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4567777876421 27999999999999 999999999999999999965
No 456
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=89.06 E-value=0.43 Score=41.11 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=36.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP 230 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (353)
++.++..+. .++..|||..||+|.++....+. +.+++++|+ +..++.++
T Consensus 202 ~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 202 IERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 444554432 45679999999999999998776 579999999 66666554
No 457
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=88.99 E-value=0.33 Score=37.51 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=48.0
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCC-CCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTK-NKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~-~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|...+ ++.|++||.+.+.-. .+.+..-+.|.|+.|+..|++.+..-++ ...+|.+.
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE-GESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT-SCEEEECC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC-CceEEEEC
Confidence 456777888887753 589999999998311 1117888999999999999999874222 24567654
No 458
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.89 E-value=0.38 Score=37.69 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=48.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|...+ ++.|++||.+.+ ++ +..-+-|.|+.|+..|++.+..-++ ...+|...
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSK-SGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETT-TEEEEEES
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCC-CceEEEec
Confidence 566777999998753 589999999998 56 8889999999999999999874222 24567653
No 459
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.64 E-value=0.31 Score=39.76 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=45.8
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccc-eeeeccCCCCccceecccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSV-VECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~-l~~~~~~g~~~~~y~~t~~ 101 (353)
--...|+..|...+ ++.|+.+||+.+|+ ..+-++|-|+.|...|+ +... ...|.+...
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE------TTEEECCTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE------CCEEEECCc
Confidence 44567888887532 37999999999999 99999999999999999 7654 345766643
No 460
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=88.60 E-value=1.4 Score=37.72 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=63.6
Q ss_pred CCeEEEEcCCchHHHHHHHHH-------CCCCeEEEecc----hHH------------------------Hh-------h
Q 018576 191 IKQLVDVGGNLGVTLQAITSK-------YPYIKGINFDQ----PHV------------------------IE-------H 228 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~-------~ 228 (353)
+..|+|+|+-.|..+..++.. .++-++.++|. |+. ++ .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 579999999999988876642 36788999993 221 00 0
Q ss_pred CCC----CCCeeEEeCCCCCCC-------CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 229 APL----HPHIEHVAGDMFQSV-------PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 229 a~~----~~rv~~~~~d~~~~~-------p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+. .++|+++.|++.+-+ |.. |++++-.=++ +.....|..+...|+|||.+++=+
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcC
Confidence 011 267999999987622 322 6666654221 335688999999999999998755
No 461
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=88.28 E-value=0.22 Score=42.81 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=42.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..++..|...++ ++.|..+||+.+++ ++..+.++++-|+..|+|.+.+
T Consensus 159 ~q~~vL~~L~~~~~-~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 159 VEFTILAIITSQNK-NIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHHHHHHTTTT-CCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHHhCCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC
Confidence 45667788876431 25999999999999 9999999999999999999974
No 462
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=87.11 E-value=0.36 Score=30.48 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=41.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+-.|++.+..+| |-+.++..|+..|+ +.+-+-.+|+-|++.|++..+
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecc
Confidence 445778888865 78999999999999 999999999999999999764
No 463
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=87.03 E-value=0.39 Score=43.91 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc----CCCCccceecc
Q 018576 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD----GSGARRRYSLN 99 (353)
Q Consensus 24 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~----~g~~~~~y~~t 99 (353)
..+++++...+..|++.|. . +|.|..|||+.+|+ .+.-+.++++-|...|++.+... .|+....|.++
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~ 83 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKIS 83 (380)
T ss_dssp ----------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEEC
T ss_pred cCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEc
Confidence 4567788888889999999 6 59999999999999 99999999999999999988521 12223346666
Q ss_pred cccc
Q 018576 100 SVSK 103 (353)
Q Consensus 100 ~~~~ 103 (353)
+...
T Consensus 84 ~~~~ 87 (380)
T 2hoe_A 84 PNCA 87 (380)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 6544
No 464
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=86.92 E-value=0.38 Score=35.79 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCC------CCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLP------TKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSVSK 103 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~~~ 103 (353)
.++-|+..|.. +|.+--+|++.+. + ++.-+...|+-|+..|+|+.... +|.....|++|+.|+
T Consensus 10 l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 81 (115)
T 4esb_A 10 LEGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL 81 (115)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence 34446667776 4899999998884 6 89999999999999999997631 232334599998887
Q ss_pred ccc
Q 018576 104 YYV 106 (353)
Q Consensus 104 ~l~ 106 (353)
..+
T Consensus 82 ~~l 84 (115)
T 4esb_A 82 EQL 84 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 465
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=86.78 E-value=0.35 Score=37.21 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=44.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceec
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSL 98 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~ 98 (353)
+-.|++.|.. ||.|+.+||+.+|+ +...+.-.|..|+..|++.+. +-|. -..|++
T Consensus 13 k~~ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V-k~GK-~ayw~L 67 (165)
T 2vxz_A 13 LRDILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV-AFGN-VALVCL 67 (165)
T ss_dssp HHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE-EETT-EEEEES
T ss_pred HHHHHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE-EEcc-EEEEEe
Confidence 3456777874 59999999999999 999999999999999999998 3342 344544
No 466
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=86.73 E-value=4 Score=30.98 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=52.8
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC--C-----CCCcEEEeccccccC
Q 018576 191 IKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS--V-----PKGDAIFLKWILHDW 261 (353)
Q Consensus 191 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--~-----p~~D~i~~~~~Lh~~ 261 (353)
..+|+=+|||. |......+... +.+++++|. ++.++.+++ ..+.++.+|..++ + ..+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 35889999974 54444444443 568999998 666665554 4678899998762 1 12387776522
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEE
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
++.....+.. ..+.+.|+.+++.
T Consensus 81 ~~~~n~~~~~-~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVA-SARAKNPDIEIIA 103 (140)
T ss_dssp CHHHHHHHHH-HHHHHCSSSEEEE
T ss_pred ChHHHHHHHH-HHHHHCCCCeEEE
Confidence 1222233333 4555677777654
No 467
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=86.62 E-value=0.26 Score=41.60 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=42.9
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.|+.++|+.+++ .+..+.+.++.|+..|+|.+.. ++ ....+.+|+.|..+.
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~-~~-R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV-TK-RGQILNITEKGLDVL 78 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEE-cC-CeEEEEECHHHHHHH
Confidence 6899999999999 9999999999999999999862 11 145677887777655
No 468
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=86.36 E-value=0.31 Score=41.16 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=39.9
Q ss_pred CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 51 t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+..+||+.+++ ++..+.+.|+.|+..|++++.+ +..+.+|+.|..+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG-----DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC-----CccEEECHHHHHHH
Confidence 44999999999 9999999999999999999872 35688888777554
No 469
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=86.27 E-value=0.36 Score=35.08 Aligned_cols=46 Identities=30% Similarity=0.339 Sum_probs=37.5
Q ss_pred HhChhhhhhhcCCCCCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|+..|..+ +.+ |..+||+.+|+ ...-+++-|+.|+..|+|...
T Consensus 30 ~~~I~~~l~~g---~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 30 IEHIFEELDGN---EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHHHTTSSBTT---EEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhhhcCC---CcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 44455455442 355 99999999999 999999999999999999987
No 470
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=86.15 E-value=0.68 Score=35.49 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+--+.-|++.|...+ .++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ ...+|.++
T Consensus 17 T~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDG-GHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSS-SSCEEEES
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCC-CceEEEeC
Confidence 345666888887631 0389999999998 56 8888999999999999999873222 24567653
No 471
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=85.59 E-value=0.4 Score=36.83 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|.... +|.|..+|++.++.+.+.++.-+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4566777787621 489999999999821111888999999999999999997
No 472
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=85.28 E-value=0.36 Score=45.55 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..|+..|.+.+ ++++|..|||+.+++ ++..+.|+|+-|+..|+|++.+
T Consensus 405 ~q~~vl~~l~~~~-~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 405 EEIYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp HHHHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC
Confidence 4566777887641 138999999999999 9999999999999999999873
No 473
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=85.26 E-value=0.34 Score=36.39 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... +|.|..+|++.++...+.++.-+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677778775 489999999999741111688999999999999999997
No 474
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=85.12 E-value=0.64 Score=37.50 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=48.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhC--------CCCCCCCcCcHHHHHHHHhcccceeeecc--C-CCCccceecccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQL--------PTKNKDAPTMLDRILRLLASYSVVECSLD--G-SGARRRYSLNSV 101 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~-g~~~~~y~~t~~ 101 (353)
+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|+..|+|+.... + +.....|.+|+.
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~ 74 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA 74 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH
Confidence 35567778877 499999999998 56 88999999999999999997531 1 122456999999
Q ss_pred ccc
Q 018576 102 SKY 104 (353)
Q Consensus 102 ~~~ 104 (353)
|+.
T Consensus 75 G~~ 77 (179)
T 1yg2_A 75 GRS 77 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 475
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=84.84 E-value=0.18 Score=45.56 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~ 108 (353)
-+..++..|... +++|..+||+.+++ ++.-++|.|+.|...|++++. .....+|+.|..+...
T Consensus 21 r~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~------~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 21 ERFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS------KSGMTLTERGLEVYQG 83 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE------ecceEEcHHHHHHHHH
Confidence 456788888775 48999999999999 999999999999999999854 2347788888766644
No 476
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=84.66 E-value=0.42 Score=39.23 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=41.3
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
|.+..+||+.+++ .+.-++..++-|...|+++.. .....+|+.|..+.
T Consensus 30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~------~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK------QRGHFLTLKGKEIR 77 (200)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--------CEEECHHHHHHH
T ss_pred CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe------CCCeEECHHHHHHH
Confidence 8999999999999 999999999999999999986 35678888877443
No 477
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=84.28 E-value=3.7 Score=37.35 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=61.6
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeE-EEecc-hHHHhhCCC-CCCeeEEeCCCCCC----C------CCC-cEEEeccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKG-INFDQ-PHVIEHAPL-HPHIEHVAGDMFQS----V------PKG-DAIFLKWI 257 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~----~------p~~-D~i~~~~~ 257 (353)
.+++|+-||.|.++..+.+. +.++ .++|. +..++..+. .+...++.+|+.+. + +.. |+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 58999999999999999887 3554 58887 444444333 35678888888752 1 123 99999888
Q ss_pred cccCCc-------hHHHHHHHH---HHHhCCCCCEEEEEeeec
Q 018576 258 LHDWDD-------EHCLKLLKN---CYKSVPEDGKVIVVELML 290 (353)
Q Consensus 258 Lh~~~~-------~~~~~~L~~---~~~~L~pgG~l~i~e~~~ 290 (353)
...++. +....++.+ +...++| .++++|.+.
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecch
Confidence 777752 112233333 3344566 577777764
No 478
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=84.11 E-value=1.4 Score=40.54 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCchHHHHHHH-HHCCC-CeEEEecc-hHHHh
Q 018576 189 ANIKQLVDVGGNLGVTLQAIT-SKYPY-IKGINFDQ-PHVIE 227 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~ 227 (353)
++...++|||++.|.++..++ +..+. .+++.++. |...+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~ 266 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQ 266 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 567899999999999999988 56765 79999998 55444
No 479
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=83.66 E-value=5.4 Score=34.42 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred CeEEEEcCCc--hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHH
Q 018576 192 KQLVDVGGNL--GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLK 268 (353)
Q Consensus 192 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~ 268 (353)
.+|.=||+|. +.++..+.+..++.++++.|. ++.++.+.+.........|..+.....|+|++.- +......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 5788899885 334455666544678999998 4444433322111112223322233349888763 3445578
Q ss_pred HHHHHHHh-CCCCCEEE
Q 018576 269 LLKNCYKS-VPEDGKVI 284 (353)
Q Consensus 269 ~L~~~~~~-L~pgG~l~ 284 (353)
+++++... |+|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876555
No 480
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=82.87 E-value=0.67 Score=35.56 Aligned_cols=34 Identities=6% Similarity=0.043 Sum_probs=32.2
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|.++||+.+|+ ++.-+.+.|+.|...|++...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999999 999999999999999999985
No 481
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=82.85 E-value=0.74 Score=34.49 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=38.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
....|.+.+.. .|.++.+|++.+++ ++..++++|+.|+..|.+...
T Consensus 8 l~~~i~~~~~~----~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 8 IWQKAEPLFGD----EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp HHHHHGGGCSS----SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34455666654 27799999999999 999999999999999999887
No 482
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=82.48 E-value=0.73 Score=38.74 Aligned_cols=48 Identities=10% Similarity=0.143 Sum_probs=41.0
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
.+..+||+.+++ .+..+.+.++.|+..|++++.+ ...+.+|+.|..+.
T Consensus 25 ~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 25 PLRARIAERLEQ----SGPTVSQTVARMERDGLVVVAS-----DRSLQMTPTGRTLA 72 (226)
T ss_dssp CBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT-----TSBEEECHHHHHHH
T ss_pred ccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC-----CCCeEECHHHHHHH
Confidence 355999999999 9999999999999999999862 45688998887654
No 483
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=82.37 E-value=1 Score=32.56 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=34.1
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
.+.++||+..|.. |++|-.|||+.+|+ ....+.|+=++|-
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~ 83 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence 4567999999998 47999999999999 8888888877664
No 484
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=82.35 E-value=15 Score=28.19 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-C------CCCCcEEEeccccc
Q 018576 189 ANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-S------VPKGDAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~------~p~~D~i~~~~~Lh 259 (353)
....+|+=+|+|. |......+... +.+++++|. ++.++.++....+..+.+|..+ . ....|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~--- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT--- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence 3467899999874 54444444443 468999998 5566666523346667777643 1 11238777653
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++.....+..+.+.+.|..+++.
T Consensus 93 --~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 93 --NDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp --SCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred --CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 233344455555566666665554
No 485
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.31 E-value=1.2 Score=40.91 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=44.3
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++..-+..|++.|... ++.|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 4445556688899886 59999999999999 999999999999999999885
No 486
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=82.06 E-value=1.8 Score=36.46 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=39.0
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.-|+-.|.. ++.|.++||+.+|+ ++.-|+..|+-|+..|+|.+.
T Consensus 167 ~~~l~~~l~~----~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLLN----GRATVEELSDRLNL----KEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHHS----SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHhc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe
Confidence 3455556666 59999999999999 999999999999999999876
No 487
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.76 E-value=1.4 Score=40.90 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=45.5
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++..-+..|++.|... ++.|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 5566667789999886 59999999999999 999999999999999999885
No 488
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.60 E-value=1.9 Score=32.67 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+|+ +..-+++-|+.|+..|++...
T Consensus 26 ~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 466 89999999999 999999999999999999986
No 489
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=80.55 E-value=1.2 Score=32.82 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+|+ +..-+++-|+.|+..|+++..
T Consensus 31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 355 89999999999 999999999999999999986
No 490
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=80.33 E-value=3.8 Score=30.69 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCcccee
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYS 97 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~ 97 (353)
....++-..++=|+..|. . |.+--+|.+.+ ++ ++.-+...|+-|+..|+|+.... ++.....|+
T Consensus 14 ~~~l~~g~l~~~IL~lL~-~----p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~ 84 (123)
T 3ri2_A 14 VLELRRGTLVMLVLSQLR-E----PAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYR 84 (123)
T ss_dssp HHHHHHHHHHHHHHHHTT-S----CEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEE
T ss_pred HHHHHhCcHHHHHHHHHc-C----CCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEE
Confidence 444555666777777777 4 78888888774 77 89999999999999999997621 222234688
Q ss_pred ccccccccc
Q 018576 98 LNSVSKYYV 106 (353)
Q Consensus 98 ~t~~~~~l~ 106 (353)
+|+.|+..+
T Consensus 85 LT~~Gr~~l 93 (123)
T 3ri2_A 85 TTDEGLRVL 93 (123)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 998887655
No 491
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=79.65 E-value=1.3 Score=39.29 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=44.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+..|++.|... ++.|.++||+.+++ .+..++|-|+.|...|++.+. +. +..|++.+
T Consensus 7 ~~~Il~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~-~~---g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT-VP---GKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE-ET---TTEEECSS
T ss_pred HHHHHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEE-ec---CCCcEEee
Confidence 34577777664 48999999999999 999999999999999998654 12 34677754
No 492
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=79.64 E-value=14 Score=27.39 Aligned_cols=88 Identities=17% Similarity=0.045 Sum_probs=47.6
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC-------CCCCcEEEeccccccC
Q 018576 191 IKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS-------VPKGDAIFLKWILHDW 261 (353)
Q Consensus 191 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~~~~~Lh~~ 261 (353)
..+|+=+|+|. |......+.+. +.+++++|. ++.++..++...+.++.+|..++ ....|+|+..-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~----- 77 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 77 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----
Confidence 35788888863 33322222222 468999997 44444433222466777776541 22238877662
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEE
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++.....+..+.+.++++ ++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred CCchHHHHHHHHHHHcCCC-EEEE
Confidence 2233334455566667875 4443
No 493
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=79.52 E-value=1.8 Score=33.76 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=46.1
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhC-------CCCCCCCcCcHHHHHHHHhcccceeeecc----CCCCccceecccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQL-------PTKNKDAPTMLDRILRLLASYSVVECSLD----GSGARRRYSLNSVSKYY 105 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~-------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~----~g~~~~~y~~t~~~~~l 105 (353)
|+..|.+ +|.+--+|.+.+ ++ ++..+...|+-|+..|+|+.... +|.....|++|+.|+..
T Consensus 49 IL~lL~~----~p~~GYeI~k~l~~~~~~~~i----s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~ 120 (148)
T 2zfw_A 49 VLAVLRH----EDSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDR 120 (148)
T ss_dssp HHHHHTT----CCEEHHHHHHHHHHHCTTEEC----CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCST
T ss_pred HHHHHHh----CCCcHHHHHHHHHHHcCCCCC----ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHH
Confidence 5566665 478887777766 47 88999999999999999998631 12234569999888765
Q ss_pred c
Q 018576 106 V 106 (353)
Q Consensus 106 ~ 106 (353)
+
T Consensus 121 l 121 (148)
T 2zfw_A 121 S 121 (148)
T ss_dssp T
T ss_pred H
Confidence 5
No 494
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=79.50 E-value=1.8 Score=28.53 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=39.7
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+-.|++.|..+ ||.++=.||+.+|++ ...-|.+.|-.|...|++..+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGlk---tAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGMR---TAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTCC---SGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCcc---hhhhcCHHHHHHHHccCcCCC
Confidence 55688889887 599999999999993 344499999999999999876
No 495
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=78.90 E-value=5.6 Score=35.58 Aligned_cols=93 Identities=8% Similarity=-0.031 Sum_probs=58.1
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCC------CCCC----CCCC-cEEEe
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGD------MFQS----VPKG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d------~~~~----~p~~-D~i~~ 254 (353)
...+.+||-+|+|. |..+..+++.....+++++|. ++-.+.+++..--..+..+ +.+. .+.+ |+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 56778999999885 888999999875448999986 4445554433111222211 1110 1123 77764
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.-. . ...+....+.|+|+|+++++-.
T Consensus 249 ~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----A---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCC-----C---hHHHHHHHHHhcCCCEEEEEec
Confidence 321 1 2457788899999999998754
No 496
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=78.82 E-value=9.9 Score=32.54 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=49.6
Q ss_pred eEEEEcCCc-hH-HHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCC-CCcEEEeccccccCCchHHHH
Q 018576 193 QLVDVGGNL-GV-TLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVP-KGDAIFLKWILHDWDDEHCLK 268 (353)
Q Consensus 193 ~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~D~i~~~~~Lh~~~~~~~~~ 268 (353)
+|.=||+|. |. ++..+.+.....+++++|. ++.++.+++..-......|..+... ..|+|++. .+......
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHHH
Confidence 677789884 33 3334443322237899998 4445444322211111223322233 44988876 34455678
Q ss_pred HHHHHHHhCCCCCEEEE
Q 018576 269 LLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 269 ~L~~~~~~L~pgG~l~i 285 (353)
+++++...++|+..++.
T Consensus 78 v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 88999999999875554
No 497
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=78.20 E-value=1.2 Score=34.57 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=45.9
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCC-CCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTK-NKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~-~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|... ++.|++||.+.+.-. .+.+..-+.|.|+.|+..|++.+..-++ ...+|.+.
T Consensus 18 T~qR~~Il~~l~~~---~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~-~~~~Y~~~ 83 (145)
T 3eyy_A 18 TPQRQLVLEAVDTL---EHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGH-GAPTYHLA 83 (145)
T ss_dssp CHHHHHHHHHHHHH---SSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGG-GCEEEEET
T ss_pred CHHHHHHHHHHHhc---CCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCC-CceEEEeC
Confidence 34566788888876 388999999988321 1127788999999999999999873211 23457643
No 498
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=78.19 E-value=1.8 Score=38.58 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=44.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
+..|++.|.+.. +.+.|.++||+.+|+ ....+.+.++.|...|+.-... .+..|++.+.
T Consensus 5 ~~~iL~~L~~~~-g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~~----~~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNK-PNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDSV----NHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHT-TSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEEE----TTTEEEEEEC
T ss_pred HHHHHHHHHhCC-CCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEEe----CCCeEEEecC
Confidence 445778884321 148999999999999 9999999999999999955431 1456887753
No 499
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=78.15 E-value=2 Score=37.32 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC----CeEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY----IKGINFDQ 222 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~ 222 (353)
.+..|+=||||.|..+..|.+.+|+ ++++++|.
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDP 96 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDG 96 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcC
Confidence 3569999999999999999998875 68999997
No 500
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=77.46 E-value=15 Score=28.93 Aligned_cols=90 Identities=9% Similarity=0.035 Sum_probs=50.1
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC--------CCCCcEEEecccccc
Q 018576 191 IKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS--------VPKGDAIFLKWILHD 260 (353)
Q Consensus 191 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--------~p~~D~i~~~~~Lh~ 260 (353)
..+|+=+|+|. |......+....+.+++++|. ++.++.+++ ..+..+.+|..++ ....|+|+..--
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~--- 114 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAMP--- 114 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS---
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC---
Confidence 45899999873 444333333321457899998 555554443 2466777777541 122387776421
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
++.....++ ...+.+.|+.+++..
T Consensus 115 -~~~~~~~~~-~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 115 -HHQGNQTAL-EQLQRRNYKGQIAAI 138 (183)
T ss_dssp -SHHHHHHHH-HHHHHTTCCSEEEEE
T ss_pred -ChHHHHHHH-HHHHHHCCCCEEEEE
Confidence 123233333 355567788877763
Done!