Query 018577
Match_columns 353
No_of_seqs 288 out of 2509
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02913 dihydrofolate synthet 100.0 3.1E-67 6.6E-72 533.8 34.7 316 35-351 16-356 (510)
2 COG0285 FolC Folylpolyglutamat 100.0 1.3E-66 2.8E-71 512.7 30.4 289 43-352 2-298 (427)
3 PLN02881 tetrahydrofolylpolygl 100.0 8.6E-58 1.9E-62 460.2 31.6 291 42-351 13-316 (530)
4 KOG2525 Folylpolyglutamate syn 100.0 9E-58 1.9E-62 444.9 22.4 296 42-351 18-330 (496)
5 TIGR01499 folC folylpolyglutam 100.0 2E-56 4.4E-61 442.9 29.2 265 77-351 1-273 (397)
6 PRK10846 bifunctional folylpol 100.0 5.7E-54 1.2E-58 427.9 30.5 278 43-351 11-293 (416)
7 PRK00139 murE UDP-N-acetylmura 100.0 1E-35 2.2E-40 300.3 21.6 224 87-351 88-317 (460)
8 TIGR01085 murE UDP-N-acetylmur 100.0 3.7E-33 8E-38 281.9 21.6 238 77-351 67-326 (464)
9 PRK11929 putative bifunctional 100.0 8.3E-33 1.8E-37 301.3 23.2 234 78-351 95-346 (958)
10 TIGR01143 murF UDP-N-acetylmur 100.0 1.4E-32 3E-37 274.2 18.9 205 93-350 73-292 (417)
11 PRK01438 murD UDP-N-acetylmura 100.0 4.7E-32 1E-36 274.8 18.4 202 90-351 118-339 (480)
12 PRK10773 murF UDP-N-acetylmura 100.0 1.1E-31 2.4E-36 270.5 20.4 206 93-351 99-321 (453)
13 PRK01390 murD UDP-N-acetylmura 100.0 8.3E-32 1.8E-36 271.7 19.5 197 93-351 113-326 (460)
14 COG0771 MurD UDP-N-acetylmuram 100.0 8.5E-32 1.8E-36 266.7 18.3 199 93-351 109-315 (448)
15 PRK14022 UDP-N-acetylmuramoyla 100.0 1.3E-31 2.8E-36 271.8 19.7 223 86-351 102-334 (481)
16 PRK14093 UDP-N-acetylmuramoyla 100.0 2.1E-31 4.5E-36 270.2 19.7 206 92-350 106-329 (479)
17 PRK03803 murD UDP-N-acetylmura 100.0 3.2E-31 7E-36 266.6 18.9 196 94-351 108-312 (448)
18 TIGR02068 cya_phycin_syn cyano 100.0 8.6E-31 1.9E-35 281.3 23.0 231 79-351 462-726 (864)
19 COG0770 MurF UDP-N-acetylmuram 100.0 6.3E-31 1.4E-35 262.3 19.1 205 92-349 101-320 (451)
20 PRK03806 murD UDP-N-acetylmura 100.0 3.9E-31 8.5E-36 265.2 17.8 196 93-351 104-307 (438)
21 PRK02006 murD UDP-N-acetylmura 100.0 1.1E-30 2.4E-35 266.0 20.4 218 76-351 103-359 (498)
22 PRK04308 murD UDP-N-acetylmura 100.0 8E-31 1.7E-35 263.5 18.5 200 93-351 109-314 (445)
23 PRK02705 murD UDP-N-acetylmura 100.0 8.1E-31 1.8E-35 264.3 18.0 202 93-351 108-320 (459)
24 PRK03369 murD UDP-N-acetylmura 100.0 6.4E-31 1.4E-35 267.1 16.4 195 95-351 118-322 (488)
25 TIGR01087 murD UDP-N-acetylmur 100.0 4.4E-30 9.5E-35 257.2 19.2 196 93-351 101-303 (433)
26 PRK01368 murD UDP-N-acetylmura 100.0 4.3E-30 9.4E-35 258.7 17.9 196 93-351 103-314 (454)
27 TIGR01081 mpl UDP-N-acetylmura 100.0 7.6E-30 1.6E-34 256.7 19.0 198 95-351 103-317 (448)
28 PRK04663 murD UDP-N-acetylmura 100.0 4.8E-30 1E-34 257.5 17.2 194 94-351 108-308 (438)
29 PRK02472 murD UDP-N-acetylmura 100.0 1.2E-29 2.6E-34 254.9 19.1 198 93-351 107-314 (447)
30 PRK14106 murD UDP-N-acetylmura 100.0 8.9E-30 1.9E-34 256.0 18.0 197 94-351 108-318 (450)
31 PRK00141 murD UDP-N-acetylmura 100.0 2.7E-29 5.7E-34 254.4 19.9 194 95-350 122-327 (473)
32 PRK04690 murD UDP-N-acetylmura 100.0 2.9E-29 6.2E-34 253.8 17.8 195 94-351 115-317 (468)
33 PRK11930 putative bifunctional 100.0 3.6E-29 7.8E-34 268.7 18.5 219 79-351 93-325 (822)
34 PRK00421 murC UDP-N-acetylmura 100.0 1.2E-28 2.6E-33 248.9 18.6 196 94-351 107-318 (461)
35 COG0773 MurC UDP-N-acetylmuram 100.0 1.5E-28 3.2E-33 241.7 17.7 198 93-353 106-320 (459)
36 PRK01710 murD UDP-N-acetylmura 100.0 2.3E-28 5E-33 246.6 18.5 197 93-351 116-321 (458)
37 PRK11929 putative bifunctional 100.0 4.1E-28 8.8E-33 264.6 21.1 208 93-351 602-830 (958)
38 COG0769 MurE UDP-N-acetylmuram 100.0 1.1E-27 2.3E-32 241.4 20.1 234 81-352 78-329 (475)
39 PRK14016 cyanophycin synthetas 100.0 9.6E-28 2.1E-32 253.5 20.7 230 80-351 464-727 (727)
40 PF08245 Mur_ligase_M: Mur lig 100.0 1.6E-27 3.4E-32 212.4 16.5 172 99-319 1-188 (188)
41 TIGR01082 murC UDP-N-acetylmur 100.0 2.6E-27 5.7E-32 238.3 18.1 198 94-351 99-312 (448)
42 PRK14573 bifunctional D-alanyl 99.9 1.5E-26 3.2E-31 248.2 17.5 194 94-351 104-310 (809)
43 PRK00683 murD UDP-N-acetylmura 99.9 3.5E-26 7.6E-31 228.3 15.4 182 93-351 101-284 (418)
44 PRK03815 murD UDP-N-acetylmura 99.9 2.2E-23 4.8E-28 206.8 17.0 176 95-351 90-269 (401)
45 COG1703 ArgK Putative periplas 98.0 3.7E-05 8E-10 72.7 8.9 153 81-260 38-201 (323)
46 PF03308 ArgK: ArgK protein; 97.8 1.6E-05 3.6E-10 73.9 3.6 157 80-267 15-187 (266)
47 PHA02519 plasmid partition pro 96.4 0.017 3.7E-07 57.5 9.4 53 74-126 81-141 (387)
48 PRK13705 plasmid-partitioning 96.3 0.016 3.4E-07 57.8 8.2 102 16-126 29-141 (388)
49 TIGR00750 lao LAO/AO transport 96.2 0.056 1.2E-06 51.8 11.6 47 80-126 20-68 (300)
50 PRK13869 plasmid-partitioning 96.0 0.031 6.7E-07 56.0 9.1 52 75-126 87-156 (405)
51 PRK09435 membrane ATPase/prote 95.3 0.23 5E-06 48.4 11.9 46 81-126 43-90 (332)
52 PRK01077 cobyrinic acid a,c-di 95.3 0.061 1.3E-06 54.6 8.2 35 94-128 3-40 (451)
53 COG1072 CoaA Panthothenate kin 94.6 0.44 9.6E-06 45.0 11.1 51 80-130 67-122 (283)
54 TIGR03453 partition_RepA plasm 94.2 0.14 3E-06 50.9 7.4 36 91-126 101-139 (387)
55 TIGR00379 cobB cobyrinic acid 94.1 0.12 2.6E-06 52.5 6.8 31 97-127 2-35 (449)
56 COG3367 Uncharacterized conser 94.1 1.6 3.5E-05 42.1 13.7 154 91-277 145-320 (339)
57 TIGR03172 probable selenium-de 94.0 0.067 1.4E-06 49.5 4.2 39 96-134 1-39 (232)
58 TIGR01007 eps_fam capsular exo 93.5 0.16 3.4E-06 45.5 5.6 36 91-126 14-52 (204)
59 TIGR03018 pepcterm_TyrKin exop 93.0 0.26 5.7E-06 44.4 6.4 37 90-126 31-71 (207)
60 COG0489 Mrp ATPases involved i 92.9 0.22 4.7E-06 47.1 5.8 34 93-126 56-92 (265)
61 COG2403 Predicted GTPase [Gene 92.2 0.45 9.7E-06 46.8 7.0 39 93-131 125-166 (449)
62 TIGR00064 ftsY signal recognit 92.0 1.9 4.1E-05 40.8 11.1 35 93-127 71-107 (272)
63 PRK07667 uridine kinase; Provi 91.7 0.4 8.7E-06 42.8 5.9 46 85-130 8-55 (193)
64 KOG0780 Signal recognition par 91.7 0.61 1.3E-05 46.1 7.4 34 94-127 101-136 (483)
65 cd03114 ArgK-like The function 90.9 2.4 5.3E-05 36.2 9.6 30 97-126 2-33 (148)
66 PRK15453 phosphoribulokinase; 90.9 0.36 7.8E-06 46.0 4.8 35 92-126 3-39 (290)
67 PRK13896 cobyrinic acid a,c-di 90.8 1.2 2.6E-05 45.1 8.8 32 96-127 3-37 (433)
68 cd01983 Fer4_NifH The Fer4_Nif 90.6 0.37 8.1E-06 36.5 4.0 31 97-127 2-34 (99)
69 COG1763 MobB Molybdopterin-gua 90.3 0.38 8.2E-06 42.0 4.1 37 94-130 2-40 (161)
70 PRK06761 hypothetical protein; 90.3 6.6 0.00014 37.4 12.9 68 95-166 4-73 (282)
71 PRK10416 signal recognition pa 90.3 1.1 2.4E-05 43.4 7.8 35 93-127 113-149 (318)
72 PRK14974 cell division protein 90.0 2.6 5.6E-05 41.3 10.1 35 93-127 139-175 (336)
73 TIGR03029 EpsG chain length de 90.0 0.68 1.5E-05 43.4 6.0 49 78-126 85-138 (274)
74 COG1797 CobB Cobyrinic acid a, 89.9 0.93 2E-05 45.5 7.0 31 96-126 2-35 (451)
75 PRK05632 phosphate acetyltrans 89.9 1.7 3.6E-05 46.7 9.4 32 96-127 4-38 (684)
76 COG1663 LpxK Tetraacyldisaccha 89.8 0.83 1.8E-05 44.4 6.3 50 78-127 31-84 (336)
77 PF03205 MobB: Molybdopterin g 89.1 0.52 1.1E-05 40.0 4.0 32 95-126 1-34 (140)
78 TIGR01969 minD_arch cell divis 89.1 2.8 6E-05 38.3 9.2 31 96-126 2-35 (251)
79 PRK13232 nifH nitrogenase redu 89.0 0.56 1.2E-05 44.0 4.6 36 95-130 2-40 (273)
80 PRK00652 lpxK tetraacyldisacch 88.9 0.88 1.9E-05 44.3 5.9 35 92-126 47-85 (325)
81 cd02117 NifH_like This family 88.6 0.61 1.3E-05 42.1 4.4 35 96-130 2-39 (212)
82 cd02035 ArsA ArsA ATPase funct 88.3 5.6 0.00012 36.0 10.6 27 101-127 8-34 (217)
83 cd02042 ParA ParA and ParB of 88.1 1.7 3.6E-05 34.2 6.1 30 96-125 4-33 (104)
84 COG0132 BioD Dethiobiotin synt 88.0 0.7 1.5E-05 42.5 4.3 33 94-126 2-37 (223)
85 PF00448 SRP54: SRP54-type pro 88.0 4.7 0.0001 36.2 9.6 33 96-128 3-37 (196)
86 TIGR01425 SRP54_euk signal rec 87.4 4.4 9.6E-05 41.0 10.0 34 94-127 100-135 (429)
87 PRK14489 putative bifunctional 87.2 0.85 1.8E-05 45.0 4.7 38 90-127 201-240 (366)
88 COG4240 Predicted kinase [Gene 87.2 1.2 2.7E-05 41.1 5.3 34 93-126 49-85 (300)
89 PRK05439 pantothenate kinase; 86.6 1.7 3.7E-05 42.0 6.3 36 93-128 85-124 (311)
90 COG1618 Predicted nucleotide k 86.5 1.1 2.5E-05 39.2 4.5 43 95-137 6-50 (179)
91 PRK00771 signal recognition pa 86.4 8.5 0.00018 39.0 11.4 34 94-127 95-130 (437)
92 PRK14494 putative molybdopteri 86.4 1 2.2E-05 41.6 4.5 36 94-129 1-38 (229)
93 PRK06696 uridine kinase; Valid 86.4 1.6 3.5E-05 39.7 5.8 48 78-125 5-55 (223)
94 PF00485 PRK: Phosphoribulokin 86.0 0.59 1.3E-05 41.6 2.6 27 96-122 1-29 (194)
95 cd02040 NifH NifH gene encodes 85.9 0.71 1.5E-05 42.9 3.2 27 100-126 9-35 (270)
96 PF01656 CbiA: CobQ/CobB/MinD/ 85.7 1 2.2E-05 39.3 4.0 31 96-126 3-33 (195)
97 PF13500 AAA_26: AAA domain; P 85.6 0.98 2.1E-05 40.2 3.9 32 95-126 1-35 (199)
98 cd02029 PRK_like Phosphoribulo 85.5 1 2.2E-05 42.7 4.0 32 96-127 1-34 (277)
99 COG2894 MinD Septum formation 85.3 1 2.2E-05 41.5 3.7 32 95-126 3-37 (272)
100 TIGR01968 minD_bact septum sit 85.3 1.1 2.5E-05 41.0 4.3 32 95-126 2-36 (261)
101 TIGR03371 cellulose_yhjQ cellu 85.0 1.2 2.6E-05 40.6 4.3 32 95-126 2-36 (246)
102 COG0541 Ffh Signal recognition 84.7 6.7 0.00014 39.5 9.5 86 94-200 100-190 (451)
103 PF07015 VirC1: VirC1 protein; 84.7 3.7 7.9E-05 38.0 7.2 32 95-126 2-36 (231)
104 TIGR03815 CpaE_hom_Actino heli 84.7 2.7 5.8E-05 40.5 6.8 51 76-126 74-128 (322)
105 PRK00784 cobyric acid synthase 84.7 1 2.2E-05 46.3 4.0 33 95-127 3-38 (488)
106 COG1936 Predicted nucleotide k 84.4 0.97 2.1E-05 39.9 3.1 25 95-123 1-27 (180)
107 TIGR00176 mobB molybdopterin-g 84.0 1.4 3E-05 38.1 3.9 32 96-127 1-34 (155)
108 cd03116 MobB Molybdenum is an 83.8 1.8 3.9E-05 37.6 4.6 32 95-126 2-35 (159)
109 PRK10037 cell division protein 83.7 1.5 3.3E-05 40.6 4.4 32 95-126 2-36 (250)
110 cd02028 UMPK_like Uridine mono 83.7 1.5 3.2E-05 38.7 4.1 32 96-127 1-34 (179)
111 PRK12374 putative dithiobiotin 83.5 1.5 3.4E-05 40.1 4.3 31 96-126 4-37 (231)
112 PHA02518 ParA-like protein; Pr 83.4 1.2 2.7E-05 39.5 3.6 31 96-126 2-35 (211)
113 TIGR00682 lpxK tetraacyldisacc 83.4 3.5 7.5E-05 39.9 6.8 35 93-127 27-65 (311)
114 TIGR01287 nifH nitrogenase iro 83.1 1.6 3.5E-05 40.9 4.4 31 96-126 2-34 (275)
115 PRK00090 bioD dithiobiotin syn 82.9 1.6 3.4E-05 39.5 4.1 31 97-127 2-35 (222)
116 PRK13849 putative crown gall t 82.6 1.8 3.9E-05 39.9 4.3 32 95-126 2-36 (231)
117 PRK01906 tetraacyldisaccharide 82.5 3.6 7.7E-05 40.3 6.6 36 92-127 54-93 (338)
118 cd02032 Bchl_like This family 82.4 1.3 2.8E-05 41.4 3.4 30 97-126 3-34 (267)
119 cd02036 MinD Bacterial cell di 82.4 1.6 3.4E-05 37.6 3.7 30 97-126 5-34 (179)
120 COG0552 FtsY Signal recognitio 82.4 1.8 3.9E-05 42.1 4.3 33 93-125 138-172 (340)
121 PF06564 YhjQ: YhjQ protein; 82.1 1.3 2.8E-05 41.3 3.2 31 95-125 5-35 (243)
122 PRK13236 nitrogenase reductase 81.9 2.2 4.8E-05 40.8 4.9 39 92-130 4-45 (296)
123 COG0572 Udk Uridine kinase [Nu 81.9 2.4 5.2E-05 38.9 4.8 48 92-141 6-61 (218)
124 TIGR01281 DPOR_bchL light-inde 81.8 1.3 2.9E-05 41.2 3.3 27 100-126 8-34 (268)
125 CHL00175 minD septum-site dete 81.6 1.9 4.1E-05 40.5 4.3 36 94-129 15-54 (281)
126 PRK10867 signal recognition pa 81.6 11 0.00023 38.3 9.7 33 94-126 100-135 (433)
127 PRK14493 putative bifunctional 81.5 2.1 4.5E-05 40.7 4.4 32 95-127 2-35 (274)
128 TIGR02880 cbbX_cfxQ probable R 81.2 3.7 8.1E-05 39.0 6.1 41 81-122 44-88 (284)
129 PRK06278 cobyrinic acid a,c-di 80.9 6.7 0.00014 40.2 8.1 27 93-119 237-266 (476)
130 PRK14495 putative molybdopteri 80.9 2.3 5E-05 43.0 4.6 37 94-130 1-39 (452)
131 PRK13230 nitrogenase reductase 80.3 1.7 3.6E-05 40.9 3.4 32 95-126 2-35 (279)
132 PF02606 LpxK: Tetraacyldisacc 80.1 4.5 9.9E-05 39.3 6.4 37 91-127 32-72 (326)
133 cd02033 BchX Chlorophyllide re 80.0 3 6.5E-05 40.7 5.1 35 92-126 29-65 (329)
134 PRK13235 nifH nitrogenase redu 79.4 1.8 4E-05 40.6 3.3 32 95-126 2-35 (274)
135 PLN02796 D-glycerate 3-kinase 79.3 7.1 0.00015 38.3 7.4 33 94-126 100-134 (347)
136 PRK13185 chlL protochlorophyll 79.3 1.9 4.1E-05 40.3 3.3 32 95-126 3-36 (270)
137 TIGR00554 panK_bact pantothena 79.0 4.8 0.0001 38.5 6.0 35 92-126 60-98 (290)
138 PRK11889 flhF flagellar biosyn 78.8 4.5 9.7E-05 40.7 5.9 34 94-127 241-276 (436)
139 TIGR00150 HI0065_YjeE ATPase, 78.8 3.3 7.2E-05 34.9 4.3 54 76-133 4-59 (133)
140 TIGR02016 BchX chlorophyllide 78.3 2.1 4.5E-05 41.0 3.3 27 100-126 8-34 (296)
141 CHL00072 chlL photochlorophyll 78.2 2.1 4.5E-05 40.8 3.3 27 100-126 8-34 (290)
142 TIGR00313 cobQ cobyric acid sy 77.9 2.1 4.5E-05 43.9 3.4 31 99-129 3-36 (475)
143 TIGR00959 ffh signal recogniti 77.6 23 0.0005 35.9 10.7 33 94-126 99-134 (428)
144 PRK09841 cryptic autophosphory 77.6 4.8 0.0001 43.5 6.2 49 78-126 513-566 (726)
145 cd01672 TMPK Thymidine monopho 77.5 4 8.6E-05 35.5 4.7 34 96-129 2-37 (200)
146 PF09140 MipZ: ATPase MipZ; I 77.4 2.2 4.8E-05 39.9 3.1 31 96-126 2-35 (261)
147 PRK10751 molybdopterin-guanine 77.3 3.7 7.9E-05 36.3 4.4 35 93-127 5-41 (173)
148 KOG3347 Predicted nucleotide k 77.2 2.3 5.1E-05 36.8 3.0 27 90-116 3-31 (176)
149 PF07755 DUF1611: Protein of u 76.9 8.7 0.00019 37.0 7.1 36 93-128 111-149 (301)
150 cd02037 MRP-like MRP (Multiple 76.6 2.8 6.1E-05 36.2 3.4 27 100-126 8-34 (169)
151 COG0125 Tmk Thymidylate kinase 76.5 2.8 6E-05 38.2 3.5 37 94-130 3-41 (208)
152 cd03109 DTBS Dethiobiotin synt 76.5 2.9 6.2E-05 35.0 3.4 29 98-126 4-33 (134)
153 COG0003 ArsA Predicted ATPase 75.1 27 0.00059 33.9 10.1 110 95-204 3-137 (322)
154 TIGR00041 DTMP_kinase thymidyl 75.0 3 6.6E-05 36.6 3.3 31 95-125 4-36 (195)
155 KOG3022 Predicted ATPase, nucl 75.0 3 6.5E-05 39.6 3.3 32 95-126 48-82 (300)
156 PRK11670 antiporter inner memb 74.8 3 6.4E-05 41.3 3.4 33 94-126 107-142 (369)
157 PLN02924 thymidylate kinase 74.7 5.9 0.00013 36.2 5.2 37 90-126 12-50 (220)
158 cd02025 PanK Pantothenate kina 74.4 3.9 8.5E-05 37.3 3.9 30 96-125 1-34 (220)
159 PRK13234 nifH nitrogenase redu 73.7 3.4 7.3E-05 39.5 3.5 38 93-130 3-43 (295)
160 PRK13233 nifH nitrogenase redu 73.7 3.3 7.3E-05 38.7 3.4 36 95-130 3-42 (275)
161 PF13207 AAA_17: AAA domain; P 73.4 3 6.4E-05 33.5 2.6 26 96-124 1-28 (121)
162 PF13604 AAA_30: AAA domain; P 73.2 5.5 0.00012 35.6 4.5 27 98-125 25-51 (196)
163 PRK07933 thymidylate kinase; V 73.0 5.7 0.00012 36.0 4.6 34 96-129 2-37 (213)
164 TIGR00347 bioD dethiobiotin sy 72.7 4.4 9.5E-05 34.7 3.7 24 103-126 9-32 (166)
165 cd03113 CTGs CTP synthetase (C 72.3 9.2 0.0002 35.7 5.8 36 95-130 1-41 (255)
166 cd02034 CooC The accessory pro 72.0 5 0.00011 32.8 3.6 26 101-126 8-33 (116)
167 COG0455 flhG Antiactivator of 72.0 11 0.00025 35.4 6.5 40 190-230 110-149 (262)
168 cd00550 ArsA_ATPase Oxyanion-t 71.7 24 0.00052 32.8 8.7 27 101-127 9-35 (254)
169 COG0529 CysC Adenylylsulfate k 71.7 16 0.00034 32.7 6.8 66 93-164 22-89 (197)
170 PRK13231 nitrogenase reductase 71.7 2 4.4E-05 40.0 1.4 31 95-126 3-35 (264)
171 KOG0781 Signal recognition par 71.5 39 0.00085 34.7 10.3 88 93-200 377-474 (587)
172 PRK00889 adenylylsulfate kinas 71.4 8 0.00017 33.4 5.0 33 93-125 3-37 (175)
173 PLN03046 D-glycerate 3-kinase; 71.0 10 0.00022 38.4 6.1 34 93-126 211-246 (460)
174 PRK11519 tyrosine kinase; Prov 70.8 9.2 0.0002 41.3 6.3 49 78-126 508-561 (719)
175 COG1419 FlhF Flagellar GTP-bin 70.5 32 0.0007 34.5 9.5 35 94-128 203-241 (407)
176 PRK12377 putative replication 70.2 5.3 0.00011 37.3 3.8 33 95-127 102-136 (248)
177 PF13614 AAA_31: AAA domain; P 70.2 6.3 0.00014 33.1 4.0 31 95-125 1-34 (157)
178 COG1192 Soj ATPases involved i 70.1 5.3 0.00011 36.9 3.8 31 96-126 7-38 (259)
179 PRK09270 nucleoside triphospha 69.9 10 0.00023 34.5 5.7 32 91-122 30-63 (229)
180 PRK10818 cell division inhibit 69.5 5.4 0.00012 37.1 3.7 32 95-126 3-37 (270)
181 COG0504 PyrG CTP synthase (UTP 68.8 11 0.00024 38.5 5.9 36 95-130 2-42 (533)
182 PRK00105 cobT nicotinate-nucle 68.6 77 0.0017 31.0 11.6 145 76-251 22-207 (335)
183 TIGR00337 PyrG CTP synthase. C 68.5 13 0.00028 38.6 6.4 36 95-130 2-42 (525)
184 PF01121 CoaE: Dephospho-CoA k 67.8 4.2 9.1E-05 36.0 2.5 25 96-124 2-28 (180)
185 TIGR00455 apsK adenylylsulfate 67.7 11 0.00023 33.0 5.1 34 93-126 17-52 (184)
186 PF06418 CTP_synth_N: CTP synt 67.6 5.5 0.00012 37.5 3.3 32 95-126 2-37 (276)
187 TIGR03499 FlhF flagellar biosy 67.5 8.3 0.00018 36.6 4.6 35 93-127 193-231 (282)
188 PF02374 ArsA_ATPase: Anion-tr 66.8 6.5 0.00014 37.8 3.8 105 100-204 9-138 (305)
189 cd03111 CpaE_like This protein 66.8 7.8 0.00017 30.9 3.7 28 98-125 6-34 (106)
190 COG3954 PrkB Phosphoribulokina 66.5 4 8.6E-05 36.9 2.0 32 92-123 3-36 (289)
191 TIGR01005 eps_transp_fam exopo 66.3 12 0.00025 40.6 6.0 36 91-126 543-581 (754)
192 PF01583 APS_kinase: Adenylyls 66.3 27 0.00058 30.3 7.1 34 95-128 3-38 (156)
193 PRK14491 putative bifunctional 65.6 9.1 0.0002 40.4 4.9 37 93-129 9-47 (597)
194 cd03115 SRP The signal recogni 65.4 11 0.00023 32.6 4.5 32 96-127 2-35 (173)
195 PRK06835 DNA replication prote 65.2 6.7 0.00015 38.2 3.5 34 95-128 184-219 (329)
196 PRK12726 flagellar biosynthesi 64.3 11 0.00024 37.6 4.9 36 93-128 205-242 (407)
197 PRK10646 ADP-binding protein; 64.2 12 0.00026 32.4 4.5 54 75-132 9-64 (153)
198 cd02019 NK Nucleoside/nucleoti 63.6 11 0.00023 27.6 3.6 29 96-126 1-31 (69)
199 PRK05380 pyrG CTP synthetase; 63.5 15 0.00033 38.1 5.8 37 94-130 2-43 (533)
200 PRK03846 adenylylsulfate kinas 63.5 14 0.0003 32.8 5.1 34 93-126 23-58 (198)
201 PRK08233 hypothetical protein; 63.2 6.4 0.00014 33.9 2.7 24 94-117 3-28 (182)
202 PRK00698 tmk thymidylate kinas 62.9 14 0.00029 32.5 4.9 31 95-125 4-36 (205)
203 PRK05703 flhF flagellar biosyn 62.4 17 0.00038 36.6 6.0 35 94-128 221-259 (424)
204 KOG2749 mRNA cleavage and poly 62.4 14 0.00031 36.4 5.1 33 91-123 101-134 (415)
205 PF10662 PduV-EutP: Ethanolami 62.3 83 0.0018 26.9 9.3 55 190-252 61-120 (143)
206 PRK13973 thymidylate kinase; P 62.2 8.3 0.00018 34.8 3.4 35 95-129 4-40 (213)
207 cd02023 UMPK Uridine monophosp 62.0 9.7 0.00021 33.6 3.7 29 96-126 1-31 (198)
208 PLN02327 CTP synthase 61.9 17 0.00037 37.9 5.9 31 95-125 2-36 (557)
209 KOG0635 Adenosine 5'-phosphosu 61.3 50 0.0011 28.9 7.7 64 93-162 30-95 (207)
210 PRK06995 flhF flagellar biosyn 61.0 22 0.00049 36.5 6.5 33 94-126 256-292 (484)
211 PRK13768 GTPase; Provisional 60.6 13 0.00028 34.7 4.4 32 95-126 3-36 (253)
212 PRK13505 formate--tetrahydrofo 60.4 14 0.00031 38.3 5.0 34 93-126 54-93 (557)
213 COG0237 CoaE Dephospho-CoA kin 59.7 7.9 0.00017 35.0 2.7 26 94-123 2-29 (201)
214 cd00477 FTHFS Formyltetrahydro 58.6 18 0.00039 37.2 5.3 47 74-125 23-75 (524)
215 TIGR03160 cobT_DBIPRT nicotina 58.2 1.6E+02 0.0034 28.9 11.6 145 76-251 21-207 (333)
216 COG2805 PilT Tfp pilus assembl 58.0 38 0.00082 32.9 7.0 29 94-122 125-156 (353)
217 PRK06731 flhF flagellar biosyn 57.9 60 0.0013 30.7 8.5 34 94-127 75-110 (270)
218 COG3265 GntK Gluconate kinase 57.8 7.4 0.00016 33.7 2.0 21 98-119 2-22 (161)
219 COG3640 CooC CO dehydrogenase 57.8 11 0.00025 35.0 3.4 31 96-126 2-35 (255)
220 PLN02974 adenosylmethionine-8- 57.7 15 0.00032 40.3 4.9 36 91-126 24-62 (817)
221 COG0769 MurE UDP-N-acetylmuram 57.0 12 0.00027 38.3 4.0 34 92-125 62-95 (475)
222 cd02022 DPCK Dephospho-coenzym 56.6 10 0.00022 33.1 2.9 24 96-123 1-26 (179)
223 PRK10463 hydrogenase nickel in 55.7 76 0.0017 30.4 8.8 34 92-126 102-137 (290)
224 PF06309 Torsin: Torsin; Inte 55.4 24 0.00051 29.6 4.6 38 85-122 43-83 (127)
225 COG2804 PulE Type II secretory 54.8 1.1E+02 0.0024 31.6 10.2 43 81-126 248-292 (500)
226 PTZ00301 uridine kinase; Provi 54.6 14 0.0003 33.6 3.5 24 94-117 3-28 (210)
227 PTZ00451 dephospho-CoA kinase; 54.4 11 0.00024 35.1 2.8 20 95-114 2-23 (244)
228 PF13521 AAA_28: AAA domain; P 54.3 9.4 0.0002 32.6 2.2 23 97-123 2-26 (163)
229 PRK13886 conjugal transfer pro 54.0 15 0.00032 34.2 3.6 28 99-126 10-37 (241)
230 PRK12723 flagellar biosynthesi 53.7 31 0.00067 34.5 6.0 34 94-127 174-213 (388)
231 PRK14723 flhF flagellar biosyn 53.2 32 0.0007 37.4 6.4 34 94-127 185-222 (767)
232 PF03266 NTPase_1: NTPase; In 52.1 20 0.00042 31.3 3.9 42 97-138 2-45 (168)
233 KOG3354 Gluconate kinase [Carb 51.9 13 0.00029 32.5 2.7 50 96-152 17-66 (191)
234 KOG0025 Zn2+-binding dehydroge 51.9 2.3E+02 0.0051 27.4 11.3 174 12-199 140-353 (354)
235 PRK14734 coaE dephospho-CoA ki 51.9 15 0.00033 32.9 3.2 25 95-123 2-28 (200)
236 PRK12724 flagellar biosynthesi 51.9 24 0.00053 35.7 4.9 34 94-127 223-259 (432)
237 cd02024 NRK1 Nicotinamide ribo 51.7 11 0.00023 33.7 2.2 22 96-117 1-24 (187)
238 COG4088 Predicted nucleotide k 51.5 30 0.00064 31.9 4.9 34 95-128 2-37 (261)
239 COG1428 Deoxynucleoside kinase 51.2 13 0.00028 34.0 2.6 24 94-117 4-29 (216)
240 PF02223 Thymidylate_kin: Thym 51.2 8.1 0.00018 33.7 1.3 23 103-125 7-29 (186)
241 PRK07952 DNA replication prote 50.9 18 0.00039 33.6 3.7 32 95-126 100-133 (244)
242 TIGR00152 dephospho-CoA kinase 50.3 12 0.00026 32.9 2.3 21 96-116 1-23 (188)
243 PF13238 AAA_18: AAA domain; P 50.2 13 0.00029 29.6 2.4 20 97-116 1-22 (129)
244 COG4615 PvdE ABC-type sideroph 49.6 13 0.00029 37.3 2.6 44 93-153 348-393 (546)
245 PRK05480 uridine/cytidine kina 49.5 18 0.00039 32.2 3.4 24 93-116 5-30 (209)
246 PRK13506 formate--tetrahydrofo 49.2 26 0.00057 36.5 4.8 46 74-124 39-90 (578)
247 cd02026 PRK Phosphoribulokinas 48.5 12 0.00025 35.5 2.0 26 96-121 1-28 (273)
248 smart00053 DYNc Dynamin, GTPas 48.3 31 0.00068 32.0 4.8 39 77-115 8-49 (240)
249 PF05378 Hydant_A_N: Hydantoin 48.0 69 0.0015 28.2 6.7 46 81-133 44-89 (176)
250 TIGR00073 hypB hydrogenase acc 47.8 51 0.0011 29.3 6.1 34 92-126 20-55 (207)
251 PF01268 FTHFS: Formate--tetra 47.6 29 0.00062 36.2 4.7 42 83-125 44-91 (557)
252 cd02027 APSK Adenosine 5'-phos 47.5 29 0.00063 29.3 4.2 29 97-125 2-32 (149)
253 PRK07429 phosphoribulokinase; 47.2 17 0.00037 35.4 3.0 28 93-120 7-36 (327)
254 PLN02348 phosphoribulokinase 46.8 28 0.0006 34.9 4.4 27 93-119 48-76 (395)
255 cd02038 FleN-like FleN is a me 46.7 27 0.00058 29.1 3.8 30 96-125 4-33 (139)
256 PF03029 ATP_bind_1: Conserved 46.5 16 0.00035 33.8 2.6 28 97-125 2-29 (238)
257 PRK04040 adenylate kinase; Pro 46.5 23 0.00049 31.4 3.5 30 95-125 3-34 (188)
258 PLN02422 dephospho-CoA kinase 46.2 21 0.00046 33.0 3.3 25 95-123 2-28 (232)
259 cd01129 PulE-GspE PulE/GspE Th 45.9 1.2E+02 0.0026 28.4 8.5 31 95-126 81-114 (264)
260 PRK06547 hypothetical protein; 45.4 34 0.00074 29.9 4.4 24 93-116 14-39 (172)
261 PRK13976 thymidylate kinase; P 45.3 21 0.00046 32.3 3.2 34 96-129 2-39 (209)
262 COG0802 Predicted ATPase or ki 45.0 30 0.00066 29.8 3.8 53 75-131 6-60 (149)
263 PRK14722 flhF flagellar biosyn 44.9 37 0.00081 33.7 5.0 35 94-128 137-175 (374)
264 PRK13889 conjugal transfer rel 44.9 29 0.00063 38.9 4.6 31 96-126 364-396 (988)
265 PF08303 tRNA_lig_kinase: tRNA 44.9 51 0.0011 29.0 5.3 19 103-121 10-28 (168)
266 PRK13507 formate--tetrahydrofo 44.9 33 0.00072 35.8 4.7 48 74-125 47-100 (587)
267 PRK13695 putative NTPase; Prov 44.2 34 0.00073 29.5 4.2 28 97-124 3-32 (174)
268 TIGR01613 primase_Cterm phage/ 43.6 41 0.00089 32.0 5.0 20 100-119 84-103 (304)
269 cd02067 B12-binding B12 bindin 43.4 1.3E+02 0.0027 24.1 7.3 42 98-156 5-46 (119)
270 TIGR01501 MthylAspMutase methy 42.9 1.3E+02 0.0028 25.4 7.3 44 96-156 5-48 (134)
271 PF00142 Fer4_NifH: 4Fe-4S iro 42.8 22 0.00048 33.7 2.9 30 101-130 9-39 (273)
272 PRK14709 hypothetical protein; 42.8 45 0.00097 34.2 5.3 20 100-119 213-232 (469)
273 cd02072 Glm_B12_BD B12 binding 42.2 1.3E+02 0.0029 25.1 7.2 44 96-156 3-46 (128)
274 PRK14721 flhF flagellar biosyn 42.1 68 0.0015 32.4 6.5 35 93-127 190-228 (420)
275 PRK05541 adenylylsulfate kinas 42.0 55 0.0012 28.1 5.2 34 92-125 5-40 (176)
276 PLN02759 Formate--tetrahydrofo 41.7 45 0.00098 35.1 5.1 47 74-125 54-107 (637)
277 PF00580 UvrD-helicase: UvrD/R 41.4 21 0.00046 33.2 2.6 30 90-120 12-42 (315)
278 TIGR01650 PD_CobS cobaltochela 41.3 37 0.0008 33.1 4.3 49 73-123 47-95 (327)
279 PRK14731 coaE dephospho-CoA ki 40.7 23 0.00051 31.8 2.7 20 95-114 6-27 (208)
280 COG0378 HypB Ni2+-binding GTPa 40.6 1.5E+02 0.0034 26.8 7.7 33 94-127 13-47 (202)
281 TIGR00640 acid_CoA_mut_C methy 40.5 1.5E+02 0.0033 24.7 7.4 43 96-155 6-48 (132)
282 PRK14490 putative bifunctional 39.9 36 0.00078 33.5 4.1 33 94-127 5-39 (369)
283 PRK14730 coaE dephospho-CoA ki 39.7 28 0.0006 31.0 3.0 22 95-116 2-25 (195)
284 smart00178 SAR Sar1p-like memb 39.3 48 0.001 28.8 4.4 34 78-112 2-37 (184)
285 PRK14733 coaE dephospho-CoA ki 39.3 26 0.00057 31.7 2.7 26 95-123 7-34 (204)
286 TIGR01360 aden_kin_iso1 adenyl 39.1 32 0.0007 29.6 3.3 24 93-116 2-27 (188)
287 TIGR03549 conserved hypothetic 39.0 30 0.00066 37.1 3.5 43 75-117 160-219 (718)
288 PRK06851 hypothetical protein; 38.9 46 0.00099 33.0 4.5 33 94-126 30-64 (367)
289 COG3172 NadR Predicted ATPase/ 38.6 30 0.00065 30.5 2.8 25 94-118 8-34 (187)
290 PRK03333 coaE dephospho-CoA ki 38.5 30 0.00065 34.5 3.3 25 95-123 2-28 (395)
291 TIGR03600 phage_DnaB phage rep 38.4 1.1E+02 0.0023 30.7 7.3 47 77-127 181-230 (421)
292 KOG3308 Uncharacterized protei 38.3 24 0.00052 32.2 2.2 27 93-119 3-31 (225)
293 PRK00081 coaE dephospho-CoA ki 37.8 29 0.00063 30.8 2.8 25 95-123 3-29 (194)
294 PF08433 KTI12: Chromatin asso 37.6 42 0.00092 31.7 4.0 33 95-127 2-36 (270)
295 PRK13826 Dtr system oriT relax 37.5 45 0.00098 37.9 4.7 31 95-125 398-430 (1102)
296 PRK06217 hypothetical protein; 37.4 30 0.00065 30.2 2.8 21 96-116 3-25 (183)
297 PRK08181 transposase; Validate 36.8 27 0.00059 33.0 2.6 33 93-126 108-140 (269)
298 PRK10436 hypothetical protein; 36.6 1E+02 0.0022 31.6 6.8 34 95-129 219-255 (462)
299 TIGR03574 selen_PSTK L-seryl-t 36.6 47 0.001 30.5 4.1 30 97-126 2-33 (249)
300 COG1105 FruK Fructose-1-phosph 36.2 3.3E+02 0.0071 26.4 9.8 81 74-162 37-126 (310)
301 COG1348 NifH Nitrogenase subun 36.1 30 0.00066 32.3 2.6 31 96-126 3-35 (278)
302 TIGR03707 PPK2_P_aer polyphosp 35.9 56 0.0012 30.2 4.4 49 77-129 18-68 (230)
303 COG5623 CLP1 Predicted GTPase 35.8 70 0.0015 31.1 5.0 31 94-124 99-131 (424)
304 TIGR00235 udk uridine kinase. 35.6 36 0.00078 30.3 3.1 26 93-118 5-32 (207)
305 PTZ00386 formyl tetrahydrofola 35.6 54 0.0012 34.5 4.6 47 74-125 53-106 (625)
306 COG4917 EutP Ethanolamine util 35.3 2.8E+02 0.0061 23.5 10.1 70 190-266 62-138 (148)
307 PRK14732 coaE dephospho-CoA ki 35.1 28 0.0006 31.2 2.2 19 96-114 1-21 (196)
308 PF07931 CPT: Chloramphenicol 35.1 26 0.00055 30.9 1.9 24 95-118 2-27 (174)
309 COG0523 Putative GTPases (G3E 35.1 2.9E+02 0.0064 26.8 9.4 68 189-259 81-156 (323)
310 KOG1805 DNA replication helica 35.0 61 0.0013 36.1 5.0 29 96-125 690-718 (1100)
311 PRK05537 bifunctional sulfate 35.0 1E+02 0.0022 32.4 6.7 54 73-126 370-427 (568)
312 cd08187 BDH Butanol dehydrogen 34.6 3.2E+02 0.0069 26.9 9.9 45 77-126 17-63 (382)
313 TIGR01463 mtaA_cmuA methyltran 34.6 4.2E+02 0.0091 25.4 10.9 65 187-256 250-314 (340)
314 PRK01184 hypothetical protein; 34.2 45 0.00098 28.9 3.4 25 95-123 2-28 (184)
315 PRK11860 bifunctional 3-phosph 34.1 50 0.0011 35.3 4.3 39 79-117 426-467 (661)
316 TIGR02475 CobW cobalamin biosy 34.1 85 0.0018 30.7 5.6 31 93-126 3-36 (341)
317 PF03215 Rad17: Rad17 cell cyc 33.9 95 0.0021 32.3 6.1 51 77-130 28-80 (519)
318 COG1855 ATPase (PilT family) [ 33.0 78 0.0017 32.5 5.1 37 93-129 262-300 (604)
319 PRK05986 cob(I)alamin adenolsy 33.0 40 0.00087 30.3 2.8 32 94-125 22-55 (191)
320 cd03243 ABC_MutS_homologs The 32.9 56 0.0012 28.9 3.8 27 95-121 30-60 (202)
321 cd02020 CMPK Cytidine monophos 32.8 37 0.00081 27.7 2.5 21 96-116 1-23 (147)
322 PRK06756 flavodoxin; Provision 32.7 2.9E+02 0.0062 22.9 8.8 46 79-124 68-118 (148)
323 PRK12727 flagellar biosynthesi 32.7 82 0.0018 33.0 5.4 37 92-128 348-388 (559)
324 PF07693 KAP_NTPase: KAP famil 32.2 92 0.002 29.4 5.5 45 81-125 6-56 (325)
325 PRK09860 putative alcohol dehy 32.1 4.3E+02 0.0093 26.1 10.3 48 76-127 18-66 (383)
326 COG1484 DnaC DNA replication p 31.5 76 0.0017 29.6 4.6 38 93-130 104-143 (254)
327 TIGR00708 cobA cob(I)alamin ad 31.3 49 0.0011 29.2 3.1 31 95-125 6-38 (173)
328 PRK13975 thymidylate kinase; P 31.2 46 0.001 29.0 3.0 24 95-118 3-28 (196)
329 cd08171 GlyDH-like2 Glycerol d 31.1 2.3E+02 0.0049 27.5 8.1 45 77-126 11-55 (345)
330 PRK02261 methylaspartate mutas 31.1 2.6E+02 0.0055 23.5 7.4 44 96-156 7-50 (137)
331 KOG1532 GTPase XAB1, interacts 31.0 2.2E+02 0.0047 27.5 7.4 24 96-120 24-47 (366)
332 PRK07078 hypothetical protein; 31.0 76 0.0017 34.6 5.0 20 100-119 499-518 (759)
333 cd08192 Fe-ADH7 Iron-containin 30.8 3.3E+02 0.0072 26.6 9.3 47 76-126 11-58 (370)
334 KOG1970 Checkpoint RAD17-RFC c 30.8 3.9E+02 0.0085 28.2 9.7 51 77-130 91-145 (634)
335 PF02492 cobW: CobW/HypB/UreG, 30.5 59 0.0013 28.3 3.5 31 95-126 1-33 (178)
336 PRK08118 topology modulation p 30.3 53 0.0011 28.4 3.1 22 96-117 3-26 (167)
337 PRK08356 hypothetical protein; 30.1 67 0.0014 28.3 3.8 30 95-128 6-37 (195)
338 PRK10536 hypothetical protein; 30.0 76 0.0017 30.0 4.3 48 80-131 64-114 (262)
339 PRK04296 thymidine kinase; Pro 30.0 77 0.0017 27.9 4.2 32 95-126 3-36 (190)
340 PRK11448 hsdR type I restricti 29.9 76 0.0017 36.3 5.0 53 76-129 418-471 (1123)
341 PRK06762 hypothetical protein; 29.5 52 0.0011 27.9 2.9 22 95-116 3-26 (166)
342 cd08185 Fe-ADH1 Iron-containin 29.3 3.6E+02 0.0077 26.5 9.2 46 76-126 13-60 (380)
343 PRK12338 hypothetical protein; 29.2 50 0.0011 32.1 3.0 23 94-116 4-28 (319)
344 PRK10586 putative oxidoreducta 29.1 3.6E+02 0.0079 26.5 9.2 47 76-126 21-67 (362)
345 cd08193 HVD 5-hydroxyvalerate 29.0 4.6E+02 0.0099 25.7 9.9 47 76-126 13-60 (376)
346 cd03283 ABC_MutS-like MutS-lik 29.0 70 0.0015 28.5 3.8 29 95-123 26-58 (199)
347 TIGR02768 TraA_Ti Ti-type conj 28.7 78 0.0017 34.4 4.7 30 96-126 373-402 (744)
348 COG4555 NatA ABC-type Na+ tran 28.7 52 0.0011 30.2 2.8 39 81-119 15-55 (245)
349 cd01120 RecA-like_NTPases RecA 28.6 86 0.0019 25.6 4.1 30 97-126 2-33 (165)
350 cd00561 CobA_CobO_BtuR ATP:cor 28.5 60 0.0013 28.2 3.1 30 96-125 4-35 (159)
351 PRK13974 thymidylate kinase; P 28.5 59 0.0013 29.2 3.2 27 95-121 4-32 (212)
352 COG2759 MIS1 Formyltetrahydrof 28.4 56 0.0012 33.3 3.2 46 75-125 38-89 (554)
353 COG0857 Pta BioD-like N-termin 28.4 3.2E+02 0.0069 27.0 8.5 29 100-128 11-39 (354)
354 PRK00300 gmk guanylate kinase; 27.9 53 0.0012 28.8 2.8 25 93-117 4-30 (205)
355 KOG2387 CTP synthase (UTP-ammo 27.8 1.1E+02 0.0023 31.2 5.0 31 95-125 2-36 (585)
356 PRK04182 cytidylate kinase; Pr 27.7 51 0.0011 28.0 2.6 21 96-116 2-24 (180)
357 PLN02674 adenylate kinase 27.6 1.2E+02 0.0026 28.2 5.2 41 76-116 13-55 (244)
358 KOG0057 Mitochondrial Fe/S clu 27.5 77 0.0017 33.2 4.1 29 92-120 376-406 (591)
359 COG1102 Cmk Cytidylate kinase 27.3 61 0.0013 28.6 2.9 25 96-123 2-28 (179)
360 PF02572 CobA_CobO_BtuR: ATP:c 27.2 56 0.0012 28.8 2.8 30 96-125 5-36 (172)
361 cd00009 AAA The AAA+ (ATPases 27.1 2.1E+02 0.0046 22.3 6.1 31 94-124 19-51 (151)
362 cd03281 ABC_MSH5_euk MutS5 hom 27.1 78 0.0017 28.5 3.8 30 94-123 29-62 (213)
363 TIGR02173 cyt_kin_arch cytidyl 26.9 55 0.0012 27.6 2.6 24 96-122 2-27 (171)
364 cd01131 PilT Pilus retraction 26.7 87 0.0019 27.7 4.0 23 96-118 3-27 (198)
365 cd08190 HOT Hydroxyacid-oxoaci 26.6 4.3E+02 0.0093 26.4 9.3 48 76-127 10-58 (414)
366 COG4096 HsdR Type I site-speci 26.5 1.1E+02 0.0025 33.5 5.3 45 75-120 169-213 (875)
367 cd08194 Fe-ADH6 Iron-containin 26.3 5.9E+02 0.013 24.9 10.2 47 76-126 10-57 (375)
368 cd08181 PPD-like 1,3-propanedi 26.3 6.1E+02 0.013 24.7 10.2 46 76-126 13-60 (357)
369 TIGR02322 phosphon_PhnN phosph 26.2 55 0.0012 28.1 2.5 25 95-119 2-28 (179)
370 TIGR00665 DnaB replicative DNA 26.1 2.1E+02 0.0046 28.6 7.1 33 94-126 195-230 (434)
371 KOG3220 Similar to bacterial d 26.1 73 0.0016 29.1 3.2 25 95-123 2-28 (225)
372 COG0156 BioF 7-keto-8-aminopel 26.0 2.4E+02 0.0053 28.2 7.3 75 79-157 305-382 (388)
373 PRK13764 ATPase; Provisional 25.8 1.1E+02 0.0025 32.3 5.2 35 95-129 258-294 (602)
374 PRK14530 adenylate kinase; Pro 25.8 66 0.0014 28.8 3.0 22 95-116 4-27 (215)
375 cd00983 recA RecA is a bacter 25.7 1.5E+02 0.0032 29.0 5.5 41 88-130 51-93 (325)
376 cd02071 MM_CoA_mut_B12_BD meth 25.6 2E+02 0.0044 23.3 5.7 31 109-156 16-46 (122)
377 PRK07414 cob(I)yrinic acid a,c 25.4 99 0.0021 27.4 4.0 32 94-125 21-54 (178)
378 TIGR03708 poly_P_AMP_trns poly 25.0 1.2E+02 0.0026 31.4 5.0 50 77-130 26-78 (493)
379 COG3378 Phage associated DNA p 25.0 1.1E+02 0.0025 31.7 4.9 20 101-120 239-258 (517)
380 TIGR02533 type_II_gspE general 25.0 2.9E+02 0.0063 28.5 7.9 33 95-128 243-278 (486)
381 PF02367 UPF0079: Uncharacteri 24.6 39 0.00085 28.0 1.2 38 92-133 13-52 (123)
382 PTZ00202 tuzin; Provisional 24.6 1.2E+02 0.0025 31.4 4.7 136 77-228 271-424 (550)
383 PF05673 DUF815: Protein of un 24.5 81 0.0017 29.6 3.4 34 88-124 49-84 (249)
384 COG1341 Predicted GTPase or GT 24.4 1.1E+02 0.0023 30.7 4.4 33 94-126 73-107 (398)
385 PRK08533 flagellar accessory p 24.4 1.8E+02 0.004 26.4 5.8 31 94-125 24-57 (230)
386 cd07766 DHQ_Fe-ADH Dehydroquin 24.2 6.3E+02 0.014 24.0 10.0 104 76-228 10-117 (332)
387 PRK00023 cmk cytidylate kinase 24.1 72 0.0016 29.1 3.0 23 95-117 5-29 (225)
388 PLN02723 3-mercaptopyruvate su 24.1 2.4E+02 0.0053 27.1 6.8 47 76-126 253-300 (320)
389 PF12780 AAA_8: P-loop contain 23.8 58 0.0013 30.7 2.4 38 78-116 18-55 (268)
390 TIGR02782 TrbB_P P-type conjug 23.8 94 0.002 29.7 3.8 32 95-126 133-168 (299)
391 TIGR03709 PPK2_rel_1 polyphosp 23.8 99 0.0022 29.2 3.9 35 95-129 57-93 (264)
392 COG4133 CcmA ABC-type transpor 23.7 69 0.0015 29.0 2.6 39 85-123 19-59 (209)
393 COG4152 ABC-type uncharacteriz 23.7 43 0.00093 31.7 1.4 29 92-120 26-57 (300)
394 COG0124 HisS Histidyl-tRNA syn 23.7 4.3E+02 0.0093 26.8 8.6 52 75-126 314-368 (429)
395 COG0556 UvrB Helicase subunit 23.7 96 0.0021 32.5 3.9 47 75-125 16-62 (663)
396 cd02070 corrinoid_protein_B12- 23.7 5.2E+02 0.011 22.9 8.9 31 109-156 99-129 (201)
397 PF03976 PPK2: Polyphosphate k 23.6 33 0.00072 31.6 0.6 49 77-129 18-68 (228)
398 PF09707 Cas_Cas2CT1978: CRISP 23.6 35 0.00076 26.6 0.7 27 12-38 5-31 (86)
399 TIGR02370 pyl_corrinoid methyl 23.5 2E+02 0.0043 25.6 5.6 31 109-156 101-131 (197)
400 PF05872 DUF853: Bacterial pro 23.3 68 0.0015 32.9 2.8 29 96-125 24-52 (502)
401 PRK13947 shikimate kinase; Pro 23.3 83 0.0018 26.6 3.1 24 96-122 3-28 (171)
402 PRK05569 flavodoxin; Provision 23.2 2E+02 0.0044 23.5 5.4 46 78-123 67-114 (141)
403 cd08182 HEPD Hydroxyethylphosp 23.1 5.1E+02 0.011 25.2 9.0 45 76-126 10-54 (367)
404 cd03280 ABC_MutS2 MutS2 homolo 23.1 1E+02 0.0022 27.2 3.8 27 95-121 29-59 (200)
405 COG1110 Reverse gyrase [DNA re 23.0 1.4E+02 0.0029 33.8 5.1 33 92-125 98-130 (1187)
406 COG2241 CobL Precorrin-6B meth 23.0 4.5E+02 0.0099 23.9 7.9 87 22-127 61-147 (210)
407 cd08172 GlyDH-like1 Glycerol d 22.9 3E+02 0.0065 26.7 7.3 100 76-227 11-112 (347)
408 PLN02318 phosphoribulokinase/u 22.6 78 0.0017 33.7 3.1 25 93-117 64-90 (656)
409 cd03110 Fer4_NifH_child This p 22.6 72 0.0016 27.4 2.6 23 100-126 8-30 (179)
410 TIGR01420 pilT_fam pilus retra 22.5 1.2E+02 0.0027 29.4 4.4 33 94-126 122-157 (343)
411 TIGR00602 rad24 checkpoint pro 22.5 1.4E+02 0.003 32.0 5.1 42 77-118 93-136 (637)
412 PF06888 Put_Phosphatase: Puta 22.4 3.9E+02 0.0085 24.7 7.5 57 79-140 75-134 (234)
413 PRK06904 replicative DNA helic 22.2 4.6E+02 0.0099 26.9 8.6 32 95-126 222-256 (472)
414 PF04851 ResIII: Type III rest 22.1 1.1E+02 0.0024 25.6 3.6 39 78-117 10-51 (184)
415 cd08191 HHD 6-hydroxyhexanoate 22.0 7.6E+02 0.016 24.3 10.0 46 76-126 10-56 (386)
416 TIGR03575 selen_PSTK_euk L-ser 21.7 95 0.0021 30.4 3.4 28 103-130 10-38 (340)
417 TIGR02012 tigrfam_recA protein 21.5 3.1E+02 0.0067 26.7 6.9 41 88-130 51-93 (321)
418 PF00931 NB-ARC: NB-ARC domain 21.4 1E+02 0.0022 28.4 3.6 38 80-117 5-44 (287)
419 PRK00131 aroK shikimate kinase 21.3 1.1E+02 0.0023 25.8 3.3 23 94-116 4-28 (175)
420 PHA02575 1 deoxynucleoside mon 21.3 80 0.0017 29.2 2.6 18 96-113 2-21 (227)
421 cd01130 VirB11-like_ATPase Typ 21.2 67 0.0014 28.1 2.1 36 80-118 14-51 (186)
422 PRK08099 bifunctional DNA-bind 21.2 85 0.0018 31.4 3.0 24 93-116 218-243 (399)
423 PRK07413 hypothetical protein; 21.1 1.1E+02 0.0024 30.5 3.8 35 88-122 194-228 (382)
424 cd03223 ABCD_peroxisomal_ALDP 21.1 65 0.0014 27.6 2.0 27 92-118 25-53 (166)
425 cd02069 methionine_synthase_B1 20.9 2.4E+02 0.0052 25.5 5.7 30 110-156 106-135 (213)
426 COG1084 Predicted GTPase [Gene 20.9 1.5E+02 0.0033 29.0 4.5 24 91-114 165-190 (346)
427 cd01445 TST_Repeats Thiosulfat 20.8 3.4E+02 0.0074 22.5 6.3 47 75-122 78-124 (138)
428 PF01591 6PF2K: 6-phosphofruct 20.7 1E+02 0.0022 28.3 3.2 31 96-126 14-46 (222)
429 cd01124 KaiC KaiC is a circadi 20.6 1.5E+02 0.0032 25.3 4.2 31 97-127 2-34 (187)
430 cd08551 Fe-ADH iron-containing 20.6 5.8E+02 0.013 24.8 8.8 46 77-126 11-57 (370)
431 COG2109 BtuR ATP:corrinoid ade 20.5 1.6E+02 0.0035 26.5 4.3 33 94-126 28-62 (198)
432 KOG2743 Cobalamin synthesis pr 20.5 5E+02 0.011 25.4 7.8 35 89-126 52-89 (391)
433 PLN03210 Resistant to P. syrin 20.4 1.5E+02 0.0032 34.0 5.1 45 75-119 187-234 (1153)
434 PRK03839 putative kinase; Prov 20.4 97 0.0021 26.6 2.9 20 97-116 3-24 (180)
435 COG4167 SapF ABC-type antimicr 20.3 86 0.0019 28.5 2.5 27 92-118 37-65 (267)
436 PRK08760 replicative DNA helic 20.2 3.8E+02 0.0081 27.5 7.6 33 94-126 229-264 (476)
437 PF01935 DUF87: Domain of unkn 20.2 1.4E+02 0.0031 26.6 4.1 32 94-126 26-58 (229)
438 PF13685 Fe-ADH_2: Iron-contai 20.2 1E+02 0.0022 28.8 3.2 107 77-231 7-115 (250)
439 PRK09518 bifunctional cytidyla 20.2 85 0.0018 33.9 3.0 21 96-116 3-25 (712)
440 PRK00411 cdc6 cell division co 20.2 1.4E+02 0.003 29.2 4.3 26 95-120 56-83 (394)
441 PRK01641 leuD isopropylmalate 20.1 1.5E+02 0.0032 26.8 4.1 40 90-129 63-103 (200)
442 COG1125 OpuBA ABC-type proline 20.0 51 0.0011 31.4 1.1 27 93-119 26-54 (309)
No 1
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=3.1e-67 Score=533.78 Aligned_cols=316 Identities=66% Similarity=0.977 Sum_probs=270.8
Q ss_pred cccCCCCCccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHH
Q 018577 35 FFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSS 114 (353)
Q Consensus 35 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~ 114 (353)
-|+++.+.|+|++|++||++++.+++.|.|+++|.+.++.++|+||+++|++||+|+.++++|||||||||||||+||++
T Consensus 16 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~ 95 (510)
T PLN02913 16 LFSSSTEEPELGDFLRYLDSLKNYEKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSN 95 (510)
T ss_pred hccccccCcCHHHHHHHHHhhccccccCCccccccccccCCCHHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHH
Confidence 35556688999999999999999988888988887766679999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCC
Q 018577 115 ILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVD 194 (353)
Q Consensus 115 IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d 194 (353)
||+++||+||+|||||+.+++|||++|..|.+||++++.++++++++..+++.......+|+||++|++||++|.+.++|
T Consensus 96 iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD 175 (510)
T PLN02913 96 ILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVD 175 (510)
T ss_pred HHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999988999999999999999999988765444457999999999999999999999
Q ss_pred EEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec--CchhHHHHHHHhHHh
Q 018577 195 IAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA--YDAGIRATINGLSMF 272 (353)
Q Consensus 195 ~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~--dd~~~~~~~~~~~~~ 272 (353)
++|+|||+||++|+||++++..|+++|||||+.||+++||+|+|+||.+|+||+|++.|+|.+ ..+....++.+.|..
T Consensus 176 ~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~~ 255 (510)
T PLN02913 176 IAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKASS 255 (510)
T ss_pred EEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999877789999999999999999999999999999999999997775 346666777777776
Q ss_pred cCCCCccc---ceEEEe------ec-ceeeee-------------eeeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCC
Q 018577 273 NDRPCQSC---DIIVQA------ER-DLKLSI-------------ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYL 329 (353)
Q Consensus 273 ~~~~~~~~---d~~~~~------~~-~~~~~~-------------~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi 329 (353)
.++++... ++.+.. .+ .+.+.. ...++.++++|.||+.|+++|++++..|...++++
T Consensus 256 ~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i 335 (510)
T PLN02913 256 MNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRI 335 (510)
T ss_pred hCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67664322 111100 01 122100 11246789999999999999999999885456789
Q ss_pred CHHHHHHHHhcCCCCCcceeec
Q 018577 330 MLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 330 ~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+.+.|++||+++ .|||||..+
T Consensus 336 ~~~~I~~gL~~~-~~pGR~E~i 356 (510)
T PLN02913 336 SDASIRAGLENT-NLLGRSQFL 356 (510)
T ss_pred CHHHHHHHHHhC-CCCCceEEe
Confidence 999999999998 699998764
No 2
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-66 Score=512.74 Aligned_cols=289 Identities=37% Similarity=0.546 Sum_probs=245.8
Q ss_pred ccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577 43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~ 122 (353)
+++++..+||..+..+...+ ...++|+||++++++||+|++.+++|||+|||||||||+||++||.++||+
T Consensus 2 ~~~~~~~~wl~~l~~~~~~~---------~i~~gL~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~ 72 (427)
T COG0285 2 MSLQELAEWLHYLEQLHPKP---------GIDLGLERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYK 72 (427)
T ss_pred cchHHHHHHHHHHHhcCCCC---------cccCChHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCC
Confidence 34566667776665543211 113789999999999999999999999999999999999999999999999
Q ss_pred eEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecC
Q 018577 123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGL 202 (353)
Q Consensus 123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~ 202 (353)
||.|||||+.+|+|||++| |.+||++++.++++++++...... ...||+||++|++||++|++.++|++|+|||+
T Consensus 73 VG~yTSPHL~~~~ERI~in--g~~Isd~~~~~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGL 147 (427)
T COG0285 73 VGVYTSPHLLSFNERIRIN--GEPISDEELAAAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILEVGL 147 (427)
T ss_pred ceEECCCccCccceEEEEC--CEECCHHHHHHHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEeccc
Confidence 9999999999999999999 999999999999998887654332 47899999999999999999999999999999
Q ss_pred CCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeecC--chhHHHHHHHhHHhcCCCCccc
Q 018577 203 GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAY--DAGIRATINGLSMFNDRPCQSC 280 (353)
Q Consensus 203 gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~d--d~~~~~~~~~~~~~~~~~~~~~ 280 (353)
|||+|+||+++ |.++|||||+.||+++||+|+++||++|+||||+|+|+|.++ .|.+..++++.+...++++...
T Consensus 148 GGRlDATNVi~---p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~ 224 (427)
T COG0285 148 GGRLDATNVIE---PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVL 224 (427)
T ss_pred cccccchhccC---CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeec
Confidence 99999999998 579999999999999999999999999999999999999886 4678889998888888776544
Q ss_pred ceEEEeec---ceeee--eeeeeeeeCCCchH-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeecc
Q 018577 281 DIIVQAER---DLKLS--IELLDVKLCMIGNH-QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 352 (353)
Q Consensus 281 d~~~~~~~---~~~~~--~~~~~~~l~l~G~h-q~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 352 (353)
+....... .+.+. .....+.+|+.|.| |+.||++|++++..+.. .++.+.|++||+++ .||||+..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~~---~i~~~~i~~gl~~~-~wpGR~e~l~ 298 (427)
T COG0285 225 GPDFQVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALGK---EISEEAIRKGLANV-DWPGRLERLS 298 (427)
T ss_pred ccchhhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHhcc---cCCHHHHHHHHHhC-cCCceEEEec
Confidence 32222111 23222 13457889999988 99999999999999932 48999999999997 8999998764
No 3
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=8.6e-58 Score=460.21 Aligned_cols=291 Identities=29% Similarity=0.406 Sum_probs=244.7
Q ss_pred CccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCC--CCCcEEEEcCCCCchHHHHHHHHHHHHc
Q 018577 42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPH--SKFKTVHIAGTKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~--~~~~vI~VtGTnGKtSTt~ml~~IL~~~ 119 (353)
..+|+++++||++++....+..+ ...+++|+||+++|++||+|+ .++++|||||||||||||+||++||+++
T Consensus 13 ~~~y~~a~~~L~sl~~~~~~~~~------~~~~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~ 86 (530)
T PLN02881 13 SDSYEEALDALSSLITKKSRADP------SNPGDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNC 86 (530)
T ss_pred ccCHHHHHHHHHhcccchhhccc------cccCCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 34699999999998765332211 112378999999999999997 7889999999999999999999999999
Q ss_pred CCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEe
Q 018577 120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE 199 (353)
Q Consensus 120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlE 199 (353)
|++||+|||||+.+++|||++| |.+|+++.|.+++.++.+.++.......+.|++||++|++||.+|.+.++|++|+|
T Consensus 87 G~rvGl~tSPhL~~~rERirin--g~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlE 164 (530)
T PLN02881 87 GFRTGLFTSPHLIDVRERFRLD--GVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILE 164 (530)
T ss_pred CCCEEEECCCccCcceeEEEEC--CEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999999999999999999 99999999999998777776654322234599999999999999999999999999
Q ss_pred ecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec-CchhHHHHHHHhHHhcCCCCc
Q 018577 200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFNDRPCQ 278 (353)
Q Consensus 200 vG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~-dd~~~~~~~~~~~~~~~~~~~ 278 (353)
+|+||++|+||++.. |+++|||||+.||+++||+|+++||++|++||++|+|++.+ +++++.+++++.|.+.++++.
T Consensus 165 vGlgGr~DaTnvi~~--p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~ 242 (530)
T PLN02881 165 VGLGGRLDATNVVQK--PVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQPDEAMRVLEERASELGVPLQ 242 (530)
T ss_pred ecCCCCchhhhccCC--CCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeCCChHHHHHHHHHHHHhCCcEE
Confidence 999999999998743 68999999999999999999999999999999999998887 457788899888988888765
Q ss_pred ccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHH-HhcC---------CCCCHHHHHHHHhcCCCCCcce
Q 018577 279 SCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCL-RDQG---------GYLMLSYFLSGFREEHFWRAEI 348 (353)
Q Consensus 279 ~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l-~~~~---------~gi~~~~I~~gL~~~~~~pgR~ 348 (353)
..+. . ..+. ...+.++|.|.||..||++|++++..+ ++.+ .....+.+++||+++ .||||+
T Consensus 243 ~v~~-~---~~~~----~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~-~wpGR~ 313 (530)
T PLN02881 243 VVEP-L---DSYG----LSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTA-SLQGRA 313 (530)
T ss_pred Eecc-c---ccce----ecccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhC-CCCceE
Confidence 3321 0 0111 124678999999999999999999876 3222 124456999999997 799999
Q ss_pred eec
Q 018577 349 FLM 351 (353)
Q Consensus 349 ~~~ 351 (353)
+.+
T Consensus 314 e~v 316 (530)
T PLN02881 314 QVV 316 (530)
T ss_pred EEe
Confidence 875
No 4
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=9e-58 Score=444.93 Aligned_cols=296 Identities=35% Similarity=0.517 Sum_probs=259.2
Q ss_pred CccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCC--CCCCcEEEEcCCCCchHHHHHHHHHHHHc
Q 018577 42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNP--HSKFKTVHIAGTKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p--~~~~~vI~VtGTnGKtSTt~ml~~IL~~~ 119 (353)
.++|+++..|+++|..+.+...+.++..+.+...+|.||+++|+++|+| +.++++|||||||||||||+|+++||++.
T Consensus 18 ~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SILr~~ 97 (496)
T KOG2525|consen 18 SKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESILRQQ 97 (496)
T ss_pred chhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHHHhc
Confidence 3569999999999998887777777777788889999999999999999 88999999999999999999999999999
Q ss_pred CCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEe
Q 018577 120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE 199 (353)
Q Consensus 120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlE 199 (353)
|+|+|+|||||+.+.+|||++| |.|||++.|.+.|.++.+..+....++...|++||++|++||.+|..++||++|+|
T Consensus 98 g~rtG~yTSPHLl~vrErIriN--GqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViE 175 (496)
T KOG2525|consen 98 GLRTGFYTSPHLLSVRERIRIN--GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIE 175 (496)
T ss_pred ccccccccChhhcchhheEEEC--CEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEE
Confidence 9999999999999999999999 99999999999999999999988878888999999999999999999999999999
Q ss_pred ecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeecC-chhHHHHHHHhHHhcCCCCc
Q 018577 200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAY-DAGIRATINGLSMFNDRPCQ 278 (353)
Q Consensus 200 vG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~d-d~~~~~~~~~~~~~~~~~~~ 278 (353)
||+||++|+||++. +|.+++||+||.||+++||+|+++||++||||||.|+|++..+ ++++++++++.|...+++++
T Consensus 176 vGlGG~~DaTNvI~--kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~q~~e~~nvL~~ra~e~~~~L~ 253 (496)
T KOG2525|consen 176 VGLGGELDATNVIE--KPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVPQPPEALNVLKERASELGVPLF 253 (496)
T ss_pred eccccccccccccc--cceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcCCcHHHHHHHHHHHHhcCCCce
Confidence 99999999999995 4789999999999999999999999999999999999977765 46789999999988888765
Q ss_pred ccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHhc-C-----------CC--CCHHHHHHHHhcCCCC
Q 018577 279 SCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQ-G-----------GY--LMLSYFLSGFREEHFW 344 (353)
Q Consensus 279 ~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~-~-----------~g--i~~~~I~~gL~~~~~~ 344 (353)
..+..- ..+.....+.+.|.||..|+.+|+.++..+... + .+ +++. ...||+++ .|
T Consensus 254 ~v~p~~--------~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~l~GL~~~-~w 323 (496)
T KOG2525|consen 254 VVPPLE--------AYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPA-FLSGLAST-DW 323 (496)
T ss_pred ecCCch--------hhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCHH-Hhcchhhc-cC
Confidence 433210 011123348899999999999999999877432 1 01 5544 55699997 89
Q ss_pred Ccceeec
Q 018577 345 RAEIFLM 351 (353)
Q Consensus 345 pgR~~~~ 351 (353)
|||.+.+
T Consensus 324 PGR~qil 330 (496)
T KOG2525|consen 324 PGRLQIL 330 (496)
T ss_pred CCceEEE
Confidence 9998764
No 5
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=2e-56 Score=442.90 Aligned_cols=265 Identities=40% Similarity=0.606 Sum_probs=222.7
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
|+||+++|++||+|+.++++||||||||||||++||++||+++|++||+|||||+.+++|||++| |.+++++++.+++
T Consensus 1 l~r~~~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~--g~~i~~~~~~~~~ 78 (397)
T TIGR01499 1 LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRIN--GEPISDEELAQAF 78 (397)
T ss_pred ChHHHHHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEEC--CEECCHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCC
Q 018577 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (353)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~t 236 (353)
+++++..+.+. ..||+||+.|++||.+|.+.++|++|+|+|+||++|++|+++ |+++|||||+.||+++||+|
T Consensus 79 ~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i~---p~vaViTnI~~DHl~~lG~t 151 (397)
T TIGR01499 79 EQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIE---PLVSVITSIGLDHTEILGDT 151 (397)
T ss_pred HHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCcccccccC---CCeEEEccccHHHHHHhCcc
Confidence 99988765432 369999999999999999999999999999999999999986 57999999999999999999
Q ss_pred HHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCccc--ceEEEe--ecceeeeee---eeeeeeCCCchHH
Q 018577 237 LETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQSC--DIIVQA--ERDLKLSIE---LLDVKLCMIGNHQ 308 (353)
Q Consensus 237 le~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~~~--d~~~~~--~~~~~~~~~---~~~~~l~l~G~hq 308 (353)
+|+|+++|++|++++.+ |++.||+....++.+.+...++++... ++.+.. ...+.+... ...++++++|.||
T Consensus 152 ~e~ia~~Ka~I~k~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 231 (397)
T TIGR01499 152 LEEIAWEKAGIIKEGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQ 231 (397)
T ss_pred HHHHHHHHhCccCCCCCEEEcCCChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHH
Confidence 99999999999999877 556678877777766555444442211 221111 011222111 1246789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 309 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 309 ~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++|+++|++++..+....+.++.+.|++||+++ .|||||..+
T Consensus 232 ~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~-~~pGR~e~i 273 (397)
T TIGR01499 232 AENAALALAALEVLGKQRPKLSEEAIRKGLANT-IWPGRLEIL 273 (397)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhC-CCCceEEEE
Confidence 999999999999983222246799999999999 599999765
No 6
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=5.7e-54 Score=427.87 Aligned_cols=278 Identities=30% Similarity=0.391 Sum_probs=222.3
Q ss_pred ccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577 43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~ 122 (353)
++|.++.+|++++..+ |+ +++|+||+++|+.||+|+++.++||||||||||||++||++||+++|++
T Consensus 11 ~~~~~~~~~l~~~~~~---~~----------~~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~ 77 (416)
T PRK10846 11 SPLASWLSYLENLHSK---TI----------DLGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYR 77 (416)
T ss_pred HHHHHHHHHHHhcccc---CC----------CCChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCC
Confidence 3467788888877654 22 3789999999999999999999999999999999999999999999999
Q ss_pred eEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecC
Q 018577 123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGL 202 (353)
Q Consensus 123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~ 202 (353)
||+|||||+.+++|||++| |.+++++++.+.++++.+..+ ...||+||++|++||.+|.+.++|++|+|+|+
T Consensus 78 vG~~tSphl~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~~------~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvgl 149 (416)
T PRK10846 78 VGVYSSPHLVRYTERVRIQ--GQELPESAHTASFAEIEAARG------DISLTYFEYGTLSALWLFKQAQLDVVILEVGL 149 (416)
T ss_pred ceEECCCCCCCcceEEEEC--CEECCHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 9999999999999999999 999999999988888776542 23699999999999999999999999999999
Q ss_pred CCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCccc-
Q 018577 203 GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQSC- 280 (353)
Q Consensus 203 gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~~~- 280 (353)
||++|+||+++ |+++|||||++||+++||+|+|+|+++|++|++.+.+ |++.+|. ..++...+...++++...
T Consensus 150 ggrld~tn~i~---p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~~d~--~~~~~~~a~~~~~~~~~~~ 224 (416)
T PRK10846 150 GGRLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGEPDM--PSTIADVAQEKGALLQRRG 224 (416)
T ss_pred CCCchhhhccC---CCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECCccH--hHHHHHHHHHhCCcEEEec
Confidence 99999999985 5799999999999999999999999999999999887 4455441 123333444444443211
Q ss_pred -ceEEEee-cceeeeee-eeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 281 -DIIVQAE-RDLKLSIE-LLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 281 -d~~~~~~-~~~~~~~~-~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++.+... ..+..... .....++++ .||++|+++|++++..+ +++++.+.|++||+++. ||||+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~---~~~i~~~~i~~~L~~~~-~~gR~e~~ 293 (416)
T PRK10846 225 VDWNYSVTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS---GLEVSEQAIRDGIASAI-LPGRFQIV 293 (416)
T ss_pred ceeeeeccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHhCC-CCceEEEE
Confidence 1111110 11111110 111235555 47999999999998765 35799999999999984 99998764
No 7
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1e-35 Score=300.32 Aligned_cols=224 Identities=21% Similarity=0.215 Sum_probs=169.2
Q ss_pred cCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 018577 87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA 166 (353)
Q Consensus 87 lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~ 166 (353)
+++|+.++++||||||||||||+.||++||+.+|+++++++||+.. ++ +.+++.
T Consensus 88 ~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~-------i~--~~~~~~----------------- 141 (460)
T PRK00139 88 YGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNG-------IG--GELIPS----------------- 141 (460)
T ss_pred hcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccc-------cC--Ceeccc-----------------
Confidence 5788888999999999999999999999999999999999998753 33 333321
Q ss_pred HhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHh
Q 018577 167 IRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246 (353)
Q Consensus 167 ~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~ 246 (353)
...|+|++.++.+|..|.+.++|++|+|+|+++. +.. .++..+|+++|||||+.||++++| |+|+|+++|++
T Consensus 142 -----~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~-~~~-~l~~~~p~iaViTnI~~dHl~~~g-t~e~i~~~K~~ 213 (460)
T PRK00139 142 -----GLTTPDALDLQRLLAELVDAGVTYAAMEVSSHAL-DQG-RVDGLKFDVAVFTNLSRDHLDYHG-TMEDYLAAKAR 213 (460)
T ss_pred -----CCCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhH-hhc-hhcCCcCCEEEEcCCCcccCCcCC-CHHHHHHHHHH
Confidence 2357888888888999999999999999996543 111 122345789999999999999998 99999999999
Q ss_pred cccCC--CceeecCchhHHHHHHHhHHhcCCCCcccceEEEe---e-cceeeeeeeeeeeeCCCchHHHHHHHHHHHHHH
Q 018577 247 IIKYG--RPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQA---E-RDLKLSIELLDVKLCMIGNHQLHNALTATCAAL 320 (353)
Q Consensus 247 Iik~g--~~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~~~~---~-~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~ 320 (353)
|++.. ..|+|.||+....+... +..++......++.... . ....+... ..+.++++|.||++|+++|++++.
T Consensus 214 i~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~NalaAia~a~ 291 (460)
T PRK00139 214 LFSELGLAAVINADDEVGRRLLAL-PDAYAVSMAGADLRATDVEYTDSGQTFTLV-TEVESPLIGRFNVSNLLAALAALL 291 (460)
T ss_pred HHhcCCCeEEEEcCcHhHHHHHhh-cEEEEecCCCCcEEEEEEEEecCceEEEEE-EEEEecccchhHHHHHHHHHHHHH
Confidence 99864 45889998876655442 11122110011221110 0 11111111 157789999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 321 CLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 321 ~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
.+ |++.+.|+++|++|.++||||..+
T Consensus 292 ~l-----gi~~~~i~~~L~~~~~~~gR~e~~ 317 (460)
T PRK00139 292 AL-----GVPLEDALAALAKLQGVPGRMERV 317 (460)
T ss_pred Hc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence 99 999999999999998899999765
No 8
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=3.7e-33 Score=281.89 Aligned_cols=238 Identities=19% Similarity=0.220 Sum_probs=170.3
Q ss_pred hHHHHHHHH-HcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577 77 LGRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (353)
Q Consensus 77 l~r~~~~l~-~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (353)
+..+.++.+ .+++|+.++++|+||||||||||+.||+++|+.+|++|++++|++..... .|.+|.|
T Consensus 67 ~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~----n~~ig~p--------- 133 (464)
T TIGR01085 67 RHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGG----NDLIKNP--------- 133 (464)
T ss_pred HHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECC----eeeecCc---------
Confidence 344555554 35667778899999999999999999999999999999999998753110 0111222
Q ss_pred HHHHHHHHHHHHhhcCCccChhHHHHHHH-HHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhC
Q 018577 156 FHKIKGVLDEAIRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG 234 (353)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~t~FE~~t~~a-~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG 234 (353)
..+|.||.+++.+ +..+.+.++|++|+|+|+++ ++...+.. .+|+++|||||+.||++++|
T Consensus 134 ----------------~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~-~~~~~l~~-~~p~iaviTnI~~dHl~~~g 195 (464)
T TIGR01085 134 ----------------AALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHA-LAQGRVRG-VRFDAAVFTNLSRDHLDFHG 195 (464)
T ss_pred ----------------ccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHH-HhhCCccC-ceeCEEEEccCCCCCCcccC
Confidence 2367888888654 44555789999999999533 33333333 56899999999999999998
Q ss_pred CCHHHHHHHHHhcccC----CCceeecCchhHHHHHHHhHHh--cCC-----CCcccceEEEe-----ec-ceeeee--e
Q 018577 235 GSLETIAMAKSGIIKY----GRPVVSAYDAGIRATINGLSMF--NDR-----PCQSCDIIVQA-----ER-DLKLSI--E 295 (353)
Q Consensus 235 ~tle~ia~~Ka~Iik~----g~~vv~~dd~~~~~~~~~~~~~--~~~-----~~~~~d~~~~~-----~~-~~~~~~--~ 295 (353)
|+|+|+++|++|++. |..|+|.|||....+....... ++. +....++.... .. .+.+.. .
T Consensus 196 -s~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (464)
T TIGR01085 196 -TMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAG 274 (464)
T ss_pred -CHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEEecCceEEEEEeCCc
Confidence 999999999999985 3568999998765544321110 110 00011221111 11 122221 2
Q ss_pred eeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCCCCcceeec
Q 018577 296 LLDVKLCMIGNHQLHNALTATCAALCLRDQGGY-LMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 296 ~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~g-i~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
...+++|++|.||++|+++|++++..+ + ++.+.|+++|++|.++||||..+
T Consensus 275 ~~~~~l~l~G~hn~~NalaAia~a~~l-----g~i~~e~i~~~L~~~~~~~gR~e~~ 326 (464)
T TIGR01085 275 EGHLHTPLIGRFNVYNLLAALATLLHL-----GGIDLEDIVAALEKFRGVPGRMELV 326 (464)
T ss_pred eEEEEecCccHhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCCCCCCcEEE
Confidence 245789999999999999999999999 7 99999999999999899999865
No 9
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=8.3e-33 Score=301.31 Aligned_cols=234 Identities=18% Similarity=0.240 Sum_probs=165.5
Q ss_pred HHHHHHHH-HcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 78 GRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 78 ~r~~~~l~-~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
+.+..+.+ .+++|+.++++||||||||||||+.||++||+.+|+++++++|. ++++ + +..+.
T Consensus 95 ~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~-----~~~i--~--~~~i~-------- 157 (958)
T PRK11929 95 KALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTL-----GARL--D--GRLIP-------- 157 (958)
T ss_pred HHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCc-----cccC--C--Ceeee--------
Confidence 44444444 67889889999999999999999999999999999999997663 2222 1 11111
Q ss_pred HHHHHHHHHHHhhcCCccChhHHHHHHH-HHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCC
Q 018577 157 HKIKGVLDEAIRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGG 235 (353)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a-~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~ 235 (353)
.++|.+|..++.. |..|.+.++|++|+|+|+++. +... ++..+|+++|||||++||+++||
T Consensus 158 ---------------~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss~~l-~~~r-l~~~~p~iaviTnI~~dHl~~~g- 219 (958)
T PRK11929 158 ---------------GSLTTPDAIILHRILARMRAAGADAVAMEASSHGL-EQGR-LDGLRIAVAGFTNLTRDHLDYHG- 219 (958)
T ss_pred ---------------cCCCCCCHHHHHHHHHHHHHCCCCEEEEEeccchH-hhCc-ccccccCEEEEeCCCccccccCC-
Confidence 1234444444443 346778999999999985442 1111 22345789999999999999998
Q ss_pred CHHHHHHHHHhccc---C-CCceeecCchhHHHHHHHhHHhcCCCCc----ccceEEEe---e--c-ceeeee--eeeee
Q 018577 236 SLETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGLSMFNDRPCQ----SCDIIVQA---E--R-DLKLSI--ELLDV 299 (353)
Q Consensus 236 tle~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~~~~~~~~~~----~~d~~~~~---~--~-~~~~~~--~~~~~ 299 (353)
|+|+|+++|++|++ + +..|+|.|||....+....+......+. ..++.... . + .+.+.. ....+
T Consensus 220 t~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (958)
T PRK11929 220 TMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQL 299 (958)
T ss_pred CHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCceEEE
Confidence 99999999999998 3 3448899998876665432211000000 11222111 0 1 122221 22457
Q ss_pred eeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 300 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 300 ~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
.+|++|.||++|+++|++++..+ |++.+.|+++|++|.++||||..+
T Consensus 300 ~l~l~G~hnv~NalaAia~a~~l-----gi~~~~I~~~L~~~~~~~gR~e~i 346 (958)
T PRK11929 300 VTRLLGRFNVSNLLLVAAALKKL-----GLPLAQIARALAAVSPVPGRMERV 346 (958)
T ss_pred EecCccHhhHHHHHHHHHHHHHc-----CCCHHHHHHHHhcCCCCCCCcEEe
Confidence 89999999999999999999999 999999999999998899999865
No 10
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=1.4e-32 Score=274.22 Aligned_cols=205 Identities=27% Similarity=0.353 Sum_probs=151.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||+.||+++|+..|+ .+.|++ ++++ .+|.|.+
T Consensus 73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~-----~ig~p~~------------------------ 118 (417)
T TIGR01143 73 SGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNN-----EIGLPLT------------------------ 118 (417)
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCC-----ccchhHH------------------------
Confidence 36899999999999999999999999986 345553 2322 2343332
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-- 250 (353)
.++.+.++|++|+|+|+++.++....+...+|+++|||||+.||+|+|| |+|+|+++|++|++.
T Consensus 119 -------------~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p~vaviTNi~~dHld~~g-s~e~~~~aK~~l~~~~~ 184 (417)
T TIGR01143 119 -------------LLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQGLK 184 (417)
T ss_pred -------------HhcCCCCCeEEEEEeCCCCCCcHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHcccC
Confidence 1245778999999999888888776666677899999999999999998 999999999999974
Q ss_pred --CCceeecCchhHHHHHHHhH----HhcCC---CCcccceEEEeec--ceeeee--eeeeeeeCCCchHHHHHHHHHHH
Q 018577 251 --GRPVVSAYDAGIRATINGLS----MFNDR---PCQSCDIIVQAER--DLKLSI--ELLDVKLCMIGNHQLHNALTATC 317 (353)
Q Consensus 251 --g~~vv~~dd~~~~~~~~~~~----~~~~~---~~~~~d~~~~~~~--~~~~~~--~~~~~~l~l~G~hq~~Na~~Ala 317 (353)
+..|+|.|||....+..... ..++. ++...++.....+ .+.+.. ....++++++|.||++|+++|++
T Consensus 185 ~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia 264 (417)
T TIGR01143 185 ENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAA 264 (417)
T ss_pred CCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceEEEEccCCcHHHHHHHHHHHH
Confidence 45589999987655433211 11221 1111111111111 122221 22357889999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceee
Q 018577 318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL 350 (353)
Q Consensus 318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~ 350 (353)
++..+ |++.+.|.++|++|.++||||..
T Consensus 265 ~~~~l-----Gi~~~~i~~~l~~~~~~~gR~e~ 292 (417)
T TIGR01143 265 LALEL-----GIPLEEIAEGLAELKLVKGRFEI 292 (417)
T ss_pred HHHHc-----CCCHHHHHHHHHhCCCCCCceeE
Confidence 99999 99999999999999999999973
No 11
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.7e-32 Score=274.84 Aligned_cols=202 Identities=21% Similarity=0.220 Sum_probs=146.3
Q ss_pred CCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh
Q 018577 90 PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL 169 (353)
Q Consensus 90 p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~ 169 (353)
+..+.++|+||||||||||+.||+++|+.+|.+++. ++|+|.|++..
T Consensus 118 ~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~--------------~Gnig~~~~~~------------------- 164 (480)
T PRK01438 118 PDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAA--------------VGNIGTPVLDA------------------- 164 (480)
T ss_pred ccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEE--------------ECCccHHHHHH-------------------
Confidence 444678999999999999999999999999988764 23446555310
Q ss_pred cCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhccc
Q 018577 170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK 249 (353)
Q Consensus 170 ~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik 249 (353)
.....+.|++|+|+|+.+. +..+.+ +|+++|||||++||+++|| |+|+|+.+|++|++
T Consensus 165 -----------------~~~~~~~~~~V~E~ss~~l-~~~~~i---~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~ 222 (480)
T PRK01438 165 -----------------VRDPEGYDVLAVELSSFQL-HWSPSV---SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYE 222 (480)
T ss_pred -----------------HhcCCCCCEEEEEcChHHh-CcCccc---CCCEEEEecCChhhccccC-CHHHHHHHHHHHHh
Confidence 1234568999999999876 333444 4789999999999999999 99999999999999
Q ss_pred CCC--ceeecCchhHHHHHHHhHHhcCCCCcc--------cceEEEe----ecceeee-----eeee-eeeeCCCchHHH
Q 018577 250 YGR--PVVSAYDAGIRATINGLSMFNDRPCQS--------CDIIVQA----ERDLKLS-----IELL-DVKLCMIGNHQL 309 (353)
Q Consensus 250 ~g~--~vv~~dd~~~~~~~~~~~~~~~~~~~~--------~d~~~~~----~~~~~~~-----~~~~-~~~l~l~G~hq~ 309 (353)
++. .|+|.|||.+..++.+.+...++++.. .++.... ...+... .... ..+++++|.||+
T Consensus 223 ~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~ 302 (480)
T PRK01438 223 GTTVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNI 302 (480)
T ss_pred CCCceEEEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHH
Confidence 753 377888988777665443222222110 0111100 0001000 0001 125899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 310 HNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 310 ~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+|+++|++++..+ +++.+.|+++|++|.++||||..+
T Consensus 303 ~Na~aAia~~~~l-----gi~~~~i~~~L~~~~~~~gR~E~i 339 (480)
T PRK01438 303 ANALAAAALARSF-----GVPPAAVRDGLRAFRPDAHRIEHV 339 (480)
T ss_pred HHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 9999999999988 999999999999998888999764
No 12
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=99.98 E-value=1.1e-31 Score=270.45 Aligned_cols=206 Identities=22% Similarity=0.281 Sum_probs=149.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
..++|+||||||||||+.||+++|+..|..+ .+++. +| |.+|.|.+.
T Consensus 99 ~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~---~t~gn--~n-----~~~G~~~~~----------------------- 145 (453)
T PRK10773 99 PARVVALTGSSGKTSVKEMTAAILRQCGNTL---YTAGN--LN-----NDIGVPLTL----------------------- 145 (453)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHhcCccc---ccCcc--cc-----CCcccccHH-----------------------
Confidence 3689999999999999999999999998653 33321 11 223554431
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-- 250 (353)
.....++|++|+|+|+....+....+...+|+++|||||+.||+++|| |+|+|+++|++|++.
T Consensus 146 --------------~~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s~e~~~~aK~~l~~~~~ 210 (453)
T PRK10773 146 --------------LRLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLP 210 (453)
T ss_pred --------------hcCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-CHHHHHHHHHHHHcccC
Confidence 012457899999999876666555566667899999999999999998 999999999999963
Q ss_pred --CCceeecCchhHHHHHHHhH----HhcCC------CCcccceEEEeec-ceeeee--eeeeeeeCCCchHHHHHHHHH
Q 018577 251 --GRPVVSAYDAGIRATINGLS----MFNDR------PCQSCDIIVQAER-DLKLSI--ELLDVKLCMIGNHQLHNALTA 315 (353)
Q Consensus 251 --g~~vv~~dd~~~~~~~~~~~----~~~~~------~~~~~d~~~~~~~-~~~~~~--~~~~~~l~l~G~hq~~Na~~A 315 (353)
+..|+|.|||....+..... ..++. ++...++.....+ .+.+.. ....+++|++|.||++|+++|
T Consensus 211 ~~g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~hnv~NalaA 290 (453)
T PRK10773 211 ENGIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHNIANALAA 290 (453)
T ss_pred CCCEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceEEEEecCCcHhHHHHHHHH
Confidence 55699999987654433211 11221 1111122111111 122221 224688999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++++..+ |++.+.|+++|++|.++||||+.+
T Consensus 291 ia~a~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v 321 (453)
T PRK10773 291 AALAMSV-----GATLDAVKAGLANLKAVPGRLFPI 321 (453)
T ss_pred HHHHHHc-----CCCHHHHHHHHHhCCCCCCceeEE
Confidence 9999999 999999999999999999999765
No 13
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=8.3e-32 Score=271.73 Aligned_cols=197 Identities=22% Similarity=0.211 Sum_probs=143.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||++||+++|+.+|+++.+ .+|+|.|++.
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~--------------~gnig~~~~~----------------------- 155 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQM--------------GGNIGTAVLT----------------------- 155 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEE--------------cCccchhhhh-----------------------
Confidence 468999999999999999999999999988653 2345665531
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC-
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG- 251 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g- 251 (353)
.....+.|++|+|+|+.+ +|.++.+. |+++|||||++||+++|| |+|+|+.+|++|++.+
T Consensus 156 --------------~~~~~~~~~~V~E~~~~~-ld~t~~i~---P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~ 216 (460)
T PRK01390 156 --------------LEPPPAGRVYVLELSSYQ-IDLAPSLD---PDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQG 216 (460)
T ss_pred --------------cccCCCCCEEEEEcCccc-cccccccC---CCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence 012346899999999886 48888774 689999999999999998 8999999999999986
Q ss_pred -Cc-eeecCchhHHHHHHHhHHhcCCCCccc--------ceEEEeecceeeeee----eeee--eeCCCchHHHHHHHHH
Q 018577 252 -RP-VVSAYDAGIRATINGLSMFNDRPCQSC--------DIIVQAERDLKLSIE----LLDV--KLCMIGNHQLHNALTA 315 (353)
Q Consensus 252 -~~-vv~~dd~~~~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~~~~~----~~~~--~l~l~G~hq~~Na~~A 315 (353)
.+ |+|.||+.+..+.+... ..++++... ++.......+..... ...+ .++++|.||++|+++|
T Consensus 217 ~~~~V~n~dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA 295 (460)
T PRK01390 217 PDTAVIGVDDAYCRAIADRLE-AAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAA 295 (460)
T ss_pred CCEEEEeCCCHHHHHHHHhcc-ccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHH
Confidence 44 77788887665543321 122221100 010000000111000 0111 1579999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++++..+ +++.+.|++||++|.+|||||..+
T Consensus 296 iaa~~~l-----gi~~~~i~~gL~~~~~~~gR~e~i 326 (460)
T PRK01390 296 YAAARAL-----GLSPEEIAAGLASFPGLAHRMEQV 326 (460)
T ss_pred HHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 9999999 999999999999998999999764
No 14
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=8.5e-32 Score=266.68 Aligned_cols=199 Identities=25% Similarity=0.238 Sum_probs=148.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
..|+|+|||||||||||+||+++|+++|+++.+ .+|||.|+.+-.
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l--------------gGNIG~p~l~~~--------------------- 153 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL--------------GGNIGTPALELL--------------------- 153 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCcee--------------ccccCccHHHhh---------------------
Confidence 467999999999999999999999999999876 467888875310
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~ 252 (353)
-.....|++|+|+++.+... +. ..+|.++|||||++||+|||| ++|+|+.+|..|++...
T Consensus 154 ---------------~~~~~~d~~VlElSSfQL~~-~~---~~~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~ 213 (448)
T COG0771 154 ---------------EQAEPADVYVLELSSFQLET-TS---SLRPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQT 213 (448)
T ss_pred ---------------cccCCCCEEEEEcccccccc-Cc---cCCccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCc
Confidence 11357899999999998743 33 234789999999999999997 99999999999999877
Q ss_pred --ceeecCchhHHHHHHHhH------HhcCCCCcccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577 253 --PVVSAYDAGIRATINGLS------MFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRD 324 (353)
Q Consensus 253 --~vv~~dd~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~ 324 (353)
.|+|.||+....+..... ...+.++....+.......+.-..-...-.++++|.||+.|+++|+++|+.+
T Consensus 214 ~~~Vin~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~-- 291 (448)
T COG0771 214 EVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARAL-- 291 (448)
T ss_pred cEEEEeCCcHHHhhhhhhcccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHc--
Confidence 699999997766554320 0001110000000000000000000112368999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 325 QGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
|++.+.|.++|.+|++.|+||+.+
T Consensus 292 ---gv~~e~i~~~L~~F~gl~HR~e~v 315 (448)
T COG0771 292 ---GVPPEAILEALSSFTGLPHRLEFV 315 (448)
T ss_pred ---CCCHHHHHHHHHhCCCCCcceEEE
Confidence 999999999999999999999764
No 15
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=99.98 E-value=1.3e-31 Score=271.82 Aligned_cols=223 Identities=19% Similarity=0.200 Sum_probs=147.6
Q ss_pred HcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHH
Q 018577 86 RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE 165 (353)
Q Consensus 86 ~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~ 165 (353)
.+++|+.++++|+||||||||||+.||++||+..|+++++-++.... ..+....++++.|.+
T Consensus 102 ~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~-ig~~~~~~~~~~p~~----------------- 163 (481)
T PRK14022 102 FYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTL-DGETFFKSALTTPES----------------- 163 (481)
T ss_pred HhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeec-cCCeeeeCCCCCchH-----------------
Confidence 35779899999999999999999999999999998765543221110 000001111223311
Q ss_pred HHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhh-CCCHHHHHHHH
Q 018577 166 AIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL-GGSLETIAMAK 244 (353)
Q Consensus 166 ~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~l-G~tle~ia~~K 244 (353)
++.|++.. .+.+.++|++|+|+|++|. ....++..+|+++|||||+.||++++ ++|+|+|+.+|
T Consensus 164 --------~~l~~~~~-----~~~e~g~~~~v~EvsS~~~--~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK 228 (481)
T PRK14022 164 --------LDLFKMMA-----EAVDNGMTHLIMEVSSQAY--LVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHK 228 (481)
T ss_pred --------HHHHHHHH-----HHHHCCCCEEEEEechhHH--HhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHH
Confidence 12233221 1457899999999997654 22223334589999999999999994 25999999999
Q ss_pred HhcccCCCc-eeecC-chhHHHHHHHhHH----hcCCCCcccceEEEeecceeeeee---eeeeeeCCCchHHHHHHHHH
Q 018577 245 SGIIKYGRP-VVSAY-DAGIRATINGLSM----FNDRPCQSCDIIVQAERDLKLSIE---LLDVKLCMIGNHQLHNALTA 315 (353)
Q Consensus 245 a~Iik~g~~-vv~~d-d~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~l~l~G~hq~~Na~~A 315 (353)
++|++++.+ |+|.| ++. ......... .++... ..++. ....+.+... ...++++++|.||++|+++|
T Consensus 229 ~~i~~~~~~~Vln~d~d~~-~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA 304 (481)
T PRK14022 229 RLLMENSKAVVVNSDMDHF-SELLEQVTPQEHDFYGIDS-ENQIM--ASNAFSFEATGKLAGTYDIQLIGKFNQENAMAA 304 (481)
T ss_pred HHHhcCCCEEEEEcCCCHH-HHHHHHhcCCCEEEEecCC-ccceE--EEEEEEEEEcccCCceEEEEEechhhHHHHHHH
Confidence 999987655 77877 443 222222110 111100 00111 1111222111 12467889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++++..+ |++.+.|+++|++ .+|||||..+
T Consensus 305 ia~a~~l-----gi~~~~i~~~L~~-~~~~gR~e~i 334 (481)
T PRK14022 305 GLACLRL-----GASLEDIQKGIAQ-TPVPGRMEVL 334 (481)
T ss_pred HHHHHHc-----CCCHHHHHHHhcc-CCCCCCeEEE
Confidence 9999999 9999999999999 8999999765
No 16
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=99.98 E-value=2.1e-31 Score=270.18 Aligned_cols=206 Identities=21% Similarity=0.211 Sum_probs=151.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN 171 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~ 171 (353)
.+.++|+||||||||||+.||+++|+..|.+++. ++ ++ .|.+|.|.+ +
T Consensus 106 ~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~---~g--~~-----n~~iG~p~~---l------------------- 153 (479)
T PRK14093 106 LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHAS---VA--SF-----NNHWGVPLS---L------------------- 153 (479)
T ss_pred cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCC---Cc--cC-----CCccchhHH---H-------------------
Confidence 4678999999999999999999999999875543 22 11 122354432 0
Q ss_pred CccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC-
Q 018577 172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY- 250 (353)
Q Consensus 172 ~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~- 250 (353)
. -...++|++|+|+|+++.++...++...+|+++|||||+.||+++|| |+|+|+++|.+|++.
T Consensus 154 --------------~-~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~g-t~e~~~~aK~~l~~~~ 217 (479)
T PRK14093 154 --------------A-RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFS-GIEAIADAKAEIFTGL 217 (479)
T ss_pred --------------H-cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcC-CHHHHHHHHHHHHccC
Confidence 0 12457899999999988888777777788999999999999999997 999999999999953
Q ss_pred ---CCceeecCchhHHHHHHHhH-------HhcCCC----CcccceEEEeec-ceeeee--eeeeeeeCCCchHHHHHHH
Q 018577 251 ---GRPVVSAYDAGIRATINGLS-------MFNDRP----CQSCDIIVQAER-DLKLSI--ELLDVKLCMIGNHQLHNAL 313 (353)
Q Consensus 251 ---g~~vv~~dd~~~~~~~~~~~-------~~~~~~----~~~~d~~~~~~~-~~~~~~--~~~~~~l~l~G~hq~~Na~ 313 (353)
+..|+|.|||....+..... ..++.. +...++...... .+.+.. ....++++++|.||++|++
T Consensus 218 ~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~Nal 297 (479)
T PRK14093 218 EPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHDVTYKLGMPGRHIAMNSL 297 (479)
T ss_pred CCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCceEEEEecCCCHHHHHHHH
Confidence 45689999987765543211 112211 111111111111 122211 2246889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceee
Q 018577 314 TATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL 350 (353)
Q Consensus 314 ~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~ 350 (353)
+|++++..+ |++.++|+++|++|.+.|||+..
T Consensus 298 aAia~a~~l-----Gi~~~~i~~~l~~~~~~~gR~~~ 329 (479)
T PRK14093 298 AVLAAAELA-----GADLALAALALSQVQPAAGRGVR 329 (479)
T ss_pred HHHHHHHHc-----CCCHHHHHHHHHhCCCcCCcceE
Confidence 999999999 99999999999999999999764
No 17
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=3.2e-31 Score=266.61 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=142.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||++||++||+.+|+++.+ .+|+|.|...
T Consensus 108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~--------------ggnig~p~~~------------------------ 149 (448)
T PRK03803 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRVAV--------------GGNIGTPALD------------------------ 149 (448)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCeEE--------------ecCcCHHHHH------------------------
Confidence 47999999999999999999999999987654 1234544310
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC-
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR- 252 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~- 252 (353)
....+.|++|+|+++.+. |.++.+. |+++|||||++||+++|| |+|+|+++|++|++.+.
T Consensus 150 --------------~~~~~~~~~V~E~ss~~l-~~~~~~~---P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~ 210 (448)
T PRK03803 150 --------------LLSDDPELYVLELSSFQL-ETTHSLN---AEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQ 210 (448)
T ss_pred --------------HhcCCCCEEEEEcChhhh-CcCcccC---ccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCe
Confidence 113357999999998875 6677664 689999999999999998 89999999999999754
Q ss_pred ceeecCchhHHHHHHHhH--HhcCCCC-cccceEEEeecc--eeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577 253 PVVSAYDAGIRATINGLS--MFNDRPC-QSCDIIVQAERD--LKLSIE---LLDVKLCMIGNHQLHNALTATCAALCLRD 324 (353)
Q Consensus 253 ~vv~~dd~~~~~~~~~~~--~~~~~~~-~~~d~~~~~~~~--~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~ 324 (353)
.|+|.||+.+..+..... ..++..- ...++.+..... +..... ...++++++|.||++|+++|+++|..+
T Consensus 211 ~V~n~dd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~l-- 288 (448)
T PRK03803 211 VVFNRDDALTRPLVPDNQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAA-- 288 (448)
T ss_pred EEEeCCCHHHHHHhhcCCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHc--
Confidence 478888887665543211 1122110 000111111111 111110 113668999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 325 QGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
|++.+.|+++|++|+.+|+||..+
T Consensus 289 ---gi~~~~i~~~L~~f~g~~~R~e~v 312 (448)
T PRK03803 289 ---GLPKEAMLEVLRTFTGLPHRCEWV 312 (448)
T ss_pred ---CCCHHHHHHHHhhCCCCCCceEEE
Confidence 999999999999998999999764
No 18
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.97 E-value=8.6e-31 Score=281.33 Aligned_cols=231 Identities=23% Similarity=0.267 Sum_probs=163.6
Q ss_pred HHHHHHHHcC--CCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 79 RMNRLMDRLG--NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 79 r~~~~l~~lg--~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
-...+++.|- .|+.++|+||||||||||||++||++||+.+|++||+++|+++...++.+..+ ....+
T Consensus 462 v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g---~~t~p------- 531 (864)
T TIGR02068 462 VARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKG---DNTGP------- 531 (864)
T ss_pred HHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecC---CCCCh-------
Confidence 4566777763 56778999999999999999999999999999999999998754333322211 11110
Q ss_pred HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhC-C
Q 018577 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-G 235 (353)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG-~ 235 (353)
..++.+|.+.++|++|+|+|+||+++.++.+. +|+++|||||+.||++++| +
T Consensus 532 -------------------------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~--~pdvaVITNI~~DHL~~~g~~ 584 (864)
T TIGR02068 532 -------------------------ASARRILMDPTVDAAVLETARGGILREGLAFD--RCDVGVVTNIAGDHLGIGDIN 584 (864)
T ss_pred -------------------------HHHHHHhhCCCCCEEEEEccCCchhhccCCcc--cccEEEEecCCHHHcCCCCCC
Confidence 22334577889999999999999998888765 3789999999999999876 7
Q ss_pred CHHHHHHHHHhcc---cC-CCceeecCchhHHHHHHHhH---HhcCCC----CcccceE-----EEeecc-eee-ee---
Q 018577 236 SLETIAMAKSGII---KY-GRPVVSAYDAGIRATINGLS---MFNDRP----CQSCDII-----VQAERD-LKL-SI--- 294 (353)
Q Consensus 236 tle~ia~~Ka~Ii---k~-g~~vv~~dd~~~~~~~~~~~---~~~~~~----~~~~d~~-----~~~~~~-~~~-~~--- 294 (353)
|+|+|+.+|++|+ ++ +..|+|+|||.+..+..... ..++.+ +...++. ...... +.. ..
T Consensus 585 tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 664 (864)
T TIGR02068 585 TIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDE 664 (864)
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCcc
Confidence 9999999999995 44 44588999988765544210 011100 0000000 000000 000 00
Q ss_pred ----eeeeeeeCCCc--hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CCcceeec
Q 018577 295 ----ELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFLM 351 (353)
Q Consensus 295 ----~~~~~~l~l~G--~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~----~pgR~~~~ 351 (353)
....+.+++.| .||++|+++|+++++.+ +++.+.|++||++|.+ +||||..+
T Consensus 665 ~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l-----gi~~e~I~~gL~~F~~~~~~~pGR~e~~ 726 (864)
T TIGR02068 665 VAIARIAAIPLTMGGRVAFQIENALAAVAAAWAL-----GVPIELIRAGIRTFDADAAQAPGRFNLF 726 (864)
T ss_pred ccccceeeeccccCCcccchHHHHHHHHHHHHHc-----CCCHHHHHHHHHhccccccCCCCceEEE
Confidence 11134444445 89999999999999999 9999999999999965 99999865
No 19
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.3e-31 Score=262.33 Aligned_cols=205 Identities=26% Similarity=0.349 Sum_probs=161.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN 171 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~ 171 (353)
.+.++|+||||+|||||+.||++||+..| +| +.||+.. +|.+|.|.+-
T Consensus 101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~-~v--~~t~gn~-------Nn~iGlPltl---------------------- 148 (451)
T COG0770 101 FNAKVIAITGSNGKTTTKEMLAAILSTKG-KV--HATPGNF-------NNEIGLPLTL---------------------- 148 (451)
T ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHhhcC-eE--ecCCCcc-------CccccchhHH----------------------
Confidence 46799999999999999999999999965 54 7788643 2457888762
Q ss_pred CccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC-
Q 018577 172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY- 250 (353)
Q Consensus 172 ~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~- 250 (353)
.....+.|++|+|+|+.+.++...+....+|+++|||||+.+|++.+| |.|.|+++|++|+..
T Consensus 149 ---------------l~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg-s~e~Ia~aK~Ei~~~~ 212 (451)
T COG0770 149 ---------------LRLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGL 212 (451)
T ss_pred ---------------HhCCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC-CHHHHHHHHHHHHhcc
Confidence 234566999999999999999999998889999999999999999998 799999999999875
Q ss_pred ---CCceeecCchhHHHHHHHh----HHhcC----CCCcccceEEEeec-ceeeeee--eeeeeeCCCchHHHHHHHHHH
Q 018577 251 ---GRPVVSAYDAGIRATINGL----SMFND----RPCQSCDIIVQAER-DLKLSIE--LLDVKLCMIGNHQLHNALTAT 316 (353)
Q Consensus 251 ---g~~vv~~dd~~~~~~~~~~----~~~~~----~~~~~~d~~~~~~~-~~~~~~~--~~~~~l~l~G~hq~~Na~~Al 316 (353)
|..|+|.|++.......+. ...++ .++...++.....+ .|..... ...+++|++|+||+.|+++|+
T Consensus 213 ~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~ 292 (451)
T COG0770 213 RPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAA 292 (451)
T ss_pred CCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHH
Confidence 4568889888754443331 11222 12333333333222 1333222 236899999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhcCCCCCccee
Q 018577 317 CAALCLRDQGGYLMLSYFLSGFREEHFWRAEIF 349 (353)
Q Consensus 317 aaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~ 349 (353)
++|+.+ |++.++|+++|+.+++.+||++
T Consensus 293 a~a~~l-----G~~~e~i~~~L~~~~~~~gR~~ 320 (451)
T COG0770 293 ALALEL-----GLDLEEIAAGLKELKPVKGRLE 320 (451)
T ss_pred HHHHHc-----CCCHHHHHHHHHhcCCCCccce
Confidence 999999 9999999999999999999998
No 20
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=3.9e-31 Score=265.20 Aligned_cols=196 Identities=20% Similarity=0.189 Sum_probs=143.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||+.||++||+.+|++++. .+|+|.|..
T Consensus 104 ~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~gnig~p~~------------------------ 145 (438)
T PRK03806 104 QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGV--------------GGNIGLPAL------------------------ 145 (438)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEE--------------eCCcchhHH------------------------
Confidence 357999999999999999999999999988764 223344321
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~ 252 (353)
.....+.|++|+|+|+.+. +.++.+. |+++|||||++||+|+||+|+|+|+++|++|++...
T Consensus 146 --------------~~~~~~~~~~V~E~ss~~l-~~~~~~~---p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~ 207 (438)
T PRK03806 146 --------------SLLDQECELYVLELSSFQL-ETTSSLK---AAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK 207 (438)
T ss_pred --------------HhhccCCCEEEEEccchhh-ccCcccC---CCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCC
Confidence 0224567999999998875 5666554 689999999999999997799999999999998644
Q ss_pred -ceeecCchhHHHHHHHhH--HhcCCCCcccceEEEeecc--eeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577 253 -PVVSAYDAGIRATINGLS--MFNDRPCQSCDIIVQAERD--LKLSIE---LLDVKLCMIGNHQLHNALTATCAALCLRD 324 (353)
Q Consensus 253 -~vv~~dd~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~--~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~ 324 (353)
.|+|.|||.+..+..... ..++.. ..++....... +..... ...++++++|.||++|+++|++++..+
T Consensus 208 ~~v~n~dd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l-- 283 (438)
T PRK03806 208 VCVVNADDALTMPIRGADKRCVSFGVN--MGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAV-- 283 (438)
T ss_pred eEEEeCCCHHHHHHhcCCceEEEEecC--CCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHc--
Confidence 478889887655322110 011110 01221111011 111101 123578999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 325 QGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++.+.|+++|++|++|||||..+
T Consensus 284 ---gi~~~~i~~~L~~f~~~~gR~E~v 307 (438)
T PRK03806 284 ---GIPRASSLKALTTFTGLPHRFQLV 307 (438)
T ss_pred ---CCCHHHHHHHHHhCCCCCCeEEEE
Confidence 999999999999999999999764
No 21
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=1.1e-30 Score=266.04 Aligned_cols=218 Identities=22% Similarity=0.214 Sum_probs=153.0
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (353)
..+.+.++++.++++....++|+||||||||||++||++||+.+|+++++ .+|+| +..+...
T Consensus 103 ~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gni~----~~~~~~~ 164 (498)
T PRK02006 103 EIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAV--------------AGNIS----PAALDKL 164 (498)
T ss_pred HHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEE--------------ECCCC----HHHHHHH
Confidence 45667777888888766668999999999999999999999999999875 22223 2111111
Q ss_pred HHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhC--CCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhh
Q 018577 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN--HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL 233 (353)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~--~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~l 233 (353)
.. .... ..|++|+|+++.+. +..+.+ +|+++|||||++||++++
T Consensus 165 ~~------------------------------~~~~~~~~~~~V~E~ss~~l-~~~~~~---~p~iaviTNI~~DHld~~ 210 (498)
T PRK02006 165 ME------------------------------AIDAGALPDVWVLELSSFQL-ETTHTL---APDAATVLNITQDHLDWH 210 (498)
T ss_pred HH------------------------------hhccCCCCcEEEEEccHHHh-Cccccc---CCCEEEEcCCChhhhccc
Confidence 00 0112 24899999998764 344433 478999999999999999
Q ss_pred CCCHHHHHHHHHhcccCC-CceeecCchhHHHHHHHhH----HhcCCCCc--ccceEEEeecc--eeeee----------
Q 018577 234 GGSLETIAMAKSGIIKYG-RPVVSAYDAGIRATINGLS----MFNDRPCQ--SCDIIVQAERD--LKLSI---------- 294 (353)
Q Consensus 234 G~tle~ia~~Ka~Iik~g-~~vv~~dd~~~~~~~~~~~----~~~~~~~~--~~d~~~~~~~~--~~~~~---------- 294 (353)
| |+|+|+.+|++|++++ ..|+|.|||.+..+..... ..++.... ..++....... +....
T Consensus 211 g-s~e~y~~aK~~i~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (498)
T PRK02006 211 G-SMAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAP 289 (498)
T ss_pred C-CHHHHHHHHHHHcCCCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecCCeEEEEecCccccccccc
Confidence 8 8999999999999864 4588999988766544321 11221100 00111110000 00000
Q ss_pred -----------------eee-eeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 295 -----------------ELL-DVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 295 -----------------~~~-~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
... .++++++|.||++|+++|++++..+ |++.+.|+++|++|+++||||..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~aL~~f~~~~gR~e~~ 359 (498)
T PRK02006 290 SRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI-----GLPAAPLLHGLREYRGEPHRVELV 359 (498)
T ss_pred ccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCceEEE
Confidence 001 1468999999999999999999999 999999999999999999999764
No 22
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=8e-31 Score=263.52 Aligned_cols=200 Identities=20% Similarity=0.188 Sum_probs=143.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||+.||+++|+.+|.++.. .+|+|.|++....
T Consensus 109 ~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~--------------~GniG~~~~~~~~-------------------- 154 (445)
T PRK04308 109 GDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVI--------------AGNIGTPVLEAEL-------------------- 154 (445)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEE--------------eCCccHHHHHHHH--------------------
Confidence 358999999999999999999999999987643 3456766642100
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~ 252 (353)
.-...+.|++|+|+|+++ +|.++.+ +|+++|||||++||+++|| |+|+|+.+|++|++++.
T Consensus 155 --------------~~~~~~~d~~VlE~~~~~-l~~~~~~---~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~ 215 (445)
T PRK04308 155 --------------QREGKKADVWVLELSSFQ-LENTESL---RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDG 215 (445)
T ss_pred --------------hhcCCCCcEEEEEeChHH-hCcCccc---CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCC
Confidence 001346899999999754 4666655 4789999999999999997 99999999999998755
Q ss_pred c-eeecCchhHHHHHHHhH--HhcCCCCcccceEEEeecc-eeeeee-e-eeeeeCCCchHHHHHHHHHHHHHHHHHhcC
Q 018577 253 P-VVSAYDAGIRATINGLS--MFNDRPCQSCDIIVQAERD-LKLSIE-L-LDVKLCMIGNHQLHNALTATCAALCLRDQG 326 (353)
Q Consensus 253 ~-vv~~dd~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~-~~~~~~-~-~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~ 326 (353)
. |+|.||+.........+ ..++.. ...++....... +..... . ..++++++|.||++|+++|++++..+
T Consensus 216 ~~i~n~dd~~~~~~~~~~~~v~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l---- 290 (445)
T PRK04308 216 VQVLNADDAFCRAMKRAGREVKWFSLE-HEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAV---- 290 (445)
T ss_pred EEEEeCCcHHHHHHhhcCCcEEEecCC-CCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHc----
Confidence 4 78888887654432110 011100 001111111011 111111 1 23578999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCcceeec
Q 018577 327 GYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 327 ~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++.+.|+++|++|.++||||..+
T Consensus 291 -gi~~~~i~~~L~~f~~~~~R~e~~ 314 (445)
T PRK04308 291 -GLPREALLEHVKTFQGLPHRVEKI 314 (445)
T ss_pred -CCCHHHHHHHHhhCCCCCCceEEE
Confidence 999999999999998899999764
No 23
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=8.1e-31 Score=264.26 Aligned_cols=202 Identities=20% Similarity=0.197 Sum_probs=145.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||++||+++|+.+|+++.. .+|+|.|++.... +
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~--------------~gniG~~~~~~~~---~---------------- 154 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPA--------------CGNIGYAACELAL---L---------------- 154 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE--------------ecccChhHHHHHh---h----------------
Confidence 458999999999999999999999999987654 2345766643110 0
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~ 252 (353)
......+.|++|+|+|++ .+|.++.+ +|+++|||||++||++++| |+|+|+.+|++|++++.
T Consensus 155 -------------~~~~~~~~d~~VlE~~s~-~l~~~~~~---~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~ 216 (459)
T PRK02705 155 -------------RSGKAQKPDWIVAELSSY-QIESSPEL---APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSE 216 (459)
T ss_pred -------------hhccCCCCCEEEEEcccc-ccccCccc---CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCC
Confidence 001245789999999985 56666654 4789999999999999998 99999999999999865
Q ss_pred c-eeecCchhHHHHHHHhHH--hcCCC-----CcccceEEEeecceeeeee--eee-eeeCCCchHHHHHHHHHHHHHHH
Q 018577 253 P-VVSAYDAGIRATINGLSM--FNDRP-----CQSCDIIVQAERDLKLSIE--LLD-VKLCMIGNHQLHNALTATCAALC 321 (353)
Q Consensus 253 ~-vv~~dd~~~~~~~~~~~~--~~~~~-----~~~~d~~~~~~~~~~~~~~--~~~-~~l~l~G~hq~~Na~~Alaaa~~ 321 (353)
+ |+|.||+.+..+...... .++.. ....+..... ....+... ... .+++++|.||+.|+++|++++..
T Consensus 217 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~ 295 (459)
T PRK02705 217 IRILNGDDPYLRQHRSSWPKGYWTSTQGKASLLGQADGWILE-EGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARL 295 (459)
T ss_pred EEEEECCCHHHHHHHhcCCceEEeccCCccccccccceeEec-CCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHH
Confidence 5 778888877665432110 00000 0000001100 11111100 111 46899999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 322 LRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 322 l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+ +++.+.|.++|++|..|||||..+
T Consensus 296 l-----gv~~~~i~~~L~~f~~~~gR~e~~ 320 (459)
T PRK02705 296 A-----GLSAEAIAEALRSFPGVPHRLERI 320 (459)
T ss_pred c-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 9 999999999999999999999854
No 24
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=6.4e-31 Score=267.08 Aligned_cols=195 Identities=17% Similarity=0.154 Sum_probs=142.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~ 174 (353)
++|+||||||||||+.||+++|+.+|+++.+ .+|+|.|+..
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~--------------~GniG~p~~~------------------------- 158 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVL--------------CGNIGSPVLD------------------------- 158 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEE--------------eCCCchHHHH-------------------------
Confidence 6999999999999999999999999987654 3556776621
Q ss_pred ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCce
Q 018577 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPV 254 (353)
Q Consensus 175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~v 254 (353)
....+.|++|+|+|+.+. + .+...+|+++|||||++||+|+|| |+|+|+.+|++|++.+..|
T Consensus 159 -------------~~~~~~~~~VlE~ss~ql-~---~~~~~~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~~~~V 220 (488)
T PRK03369 159 -------------VLDEPAELLAVELSSFQL-H---WAPSLRPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTGRVAV 220 (488)
T ss_pred -------------hccCCCCEEEEECChHHh-C---cccccCCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcCCEEE
Confidence 014578999999998764 2 234456899999999999999998 9999999999999976668
Q ss_pred eecCchhHHHHHHHhHH--hcCCCCc---ccceEEEeecceee----eeee-eeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577 255 VSAYDAGIRATINGLSM--FNDRPCQ---SCDIIVQAERDLKL----SIEL-LDVKLCMIGNHQLHNALTATCAALCLRD 324 (353)
Q Consensus 255 v~~dd~~~~~~~~~~~~--~~~~~~~---~~d~~~~~~~~~~~----~~~~-~~~~l~l~G~hq~~Na~~Alaaa~~l~~ 324 (353)
+|.||+....+...... .++.... ..++.+.....+.. .... ..++++++|.||++|+++|++++..+
T Consensus 221 ln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~l-- 298 (488)
T PRK03369 221 VGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAV-- 298 (488)
T ss_pred EECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHc--
Confidence 99999876554432110 0100000 00111110000000 0001 13578999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 325 QGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
|++.+.|+++|++|.+.|||+..+
T Consensus 299 ---Gi~~e~i~~~L~~f~~~~gR~E~v 322 (488)
T PRK03369 299 ---GVPAGAIADALASFRVGRHRAEVV 322 (488)
T ss_pred ---CCCHHHHHHHHHhCCCCCCccEEE
Confidence 999999999999997779998764
No 25
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=99.97 E-value=4.4e-30 Score=257.21 Aligned_cols=196 Identities=22% Similarity=0.230 Sum_probs=139.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||++||++||+.+|+++.+ .+|+|.|...
T Consensus 101 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~--------------~gnig~~~~~----------------------- 143 (433)
T TIGR01087 101 PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFL--------------GGNIGTPALE----------------------- 143 (433)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEE--------------ECccCHHHHH-----------------------
Confidence 358999999999999999999999999988643 2234544210
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC-
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG- 251 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g- 251 (353)
.....+.|++|+|+|+.+. +.++.+ +|+++|||||++||+|++| |+|+|+++|++|++..
T Consensus 144 --------------~~~~~~~~~~V~E~~~~~l-~~~~~~---~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~ 204 (433)
T TIGR01087 144 --------------VLDQEGAELYVLELSSFQL-ETTESL---RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQT 204 (433)
T ss_pred --------------HHhccCCCEEEEEcChhHh-cCCccc---CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence 0112568999999997654 455544 4789999999999999998 9999999999999863
Q ss_pred ---CceeecCchhHHHHHHHh-H--HhcCCCCcccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHhc
Q 018577 252 ---RPVVSAYDAGIRATINGL-S--MFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQ 325 (353)
Q Consensus 252 ---~~vv~~dd~~~~~~~~~~-~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~ 325 (353)
..|+|.||+.+....... + ..++... ..+..+...... .......++++++|.||++|+++|++++..+
T Consensus 205 ~~~~~i~n~dd~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l--- 279 (433)
T TIGR01087 205 EGDVAVLNADDPRFARLAQKSKAQVIWFSVEK-DAERGLCIRDGG-LYLKPNDLEGSLLGLHNAENILAAIALAKSL--- 279 (433)
T ss_pred CCCEEEEECCCHHHHHhhhhcCceEEEEeCCc-cCCCceEEECCE-EEEeccccccCCCcHHHHHHHHHHHHHHHHc---
Confidence 458888887654433211 0 0111100 001001000000 0011113678999999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 326 GGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 326 ~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
|++.+.|+++|++|..+||||..+
T Consensus 280 --gi~~~~i~~~L~~f~g~~~R~e~v 303 (433)
T TIGR01087 280 --GLNLEAILEALRSFKGLPHRLEYV 303 (433)
T ss_pred --CCCHHHHHHHHHhCCCCCCceEEE
Confidence 999999999999998899999764
No 26
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=4.3e-30 Score=258.66 Aligned_cols=196 Identities=18% Similarity=0.162 Sum_probs=142.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||++||++||+.+|+++.+ .+|+|.|...
T Consensus 103 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GniG~p~l~----------------------- 145 (454)
T PRK01368 103 NLKFIAITGTNGKSTTTALISHILNSNGLDYPV--------------AGNIGVPALQ----------------------- 145 (454)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEE--------------EccCCHHHhc-----------------------
Confidence 457999999999999999999999999988654 3455665421
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-- 250 (353)
...+.|++|+|+|+.+.. . +...+|+++|||||++||+|+|| |+|+|+.+|..|++.
T Consensus 146 ----------------~~~~~~~~VlE~ss~ql~-~---~~~~~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~ 204 (454)
T PRK01368 146 ----------------AKASKDGYVLELSSFQLD-L---VKTFTAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMD 204 (454)
T ss_pred ----------------ccCCCCEEEEEcCchhhc-c---ccccCCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCC
Confidence 123469999999998862 2 23345899999999999999997 999999999999974
Q ss_pred --CCceeecCchhHHHHHHHhHH-------hcCCC-CcccceEEEeecc-eee--e-eeeeeeeeCCCchHHHHHHHHHH
Q 018577 251 --GRPVVSAYDAGIRATINGLSM-------FNDRP-CQSCDIIVQAERD-LKL--S-IELLDVKLCMIGNHQLHNALTAT 316 (353)
Q Consensus 251 --g~~vv~~dd~~~~~~~~~~~~-------~~~~~-~~~~d~~~~~~~~-~~~--~-~~~~~~~l~l~G~hq~~Na~~Al 316 (353)
+..|+|.||+.+..+...... .++.. ....++.+..... +.. . .....+.++++|.||++|+++|+
T Consensus 205 ~~~~~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAi 284 (454)
T PRK01368 205 KDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASY 284 (454)
T ss_pred CCCEEEEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHH
Confidence 445899999877665432211 11110 0001111110000 011 0 01234667899999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 317 CAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 317 aaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++..+ +++.+.|+++|++|.+|||||..+
T Consensus 285 a~~~~l-----gi~~~~i~~~L~~F~~~~~Rle~v 314 (454)
T PRK01368 285 AVAKII-----GVEPKKILESISSFQSLPHRMQYI 314 (454)
T ss_pred HHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 999999 999999999999999999999764
No 27
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=99.97 E-value=7.6e-30 Score=256.74 Aligned_cols=198 Identities=19% Similarity=0.199 Sum_probs=143.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~ 174 (353)
++|+||||||||||+.||+++|+.+|++++..+-. ..+|+|.|..
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~---------~~gn~G~~~~-------------------------- 147 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGG---------VPGNFGVSAR-------------------------- 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCc---------ccccCccccc--------------------------
Confidence 49999999999999999999999999987532100 0133454432
Q ss_pred ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccc--cCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS--SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (353)
Q Consensus 175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~--~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-- 250 (353)
..+.|++|+|+|+.+..+...+.+. .+|+++|||||++||+++|+ |+|+|+.+|++|++.
T Consensus 148 ---------------~~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~ 211 (448)
T TIGR01081 148 ---------------LGESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVP 211 (448)
T ss_pred ---------------cCCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCC
Confidence 1247999999999987765544433 46899999999999999996 999999999999983
Q ss_pred --CCceeecCchhHHHHHHHhHH----hcCCCCcccceEE---Eeec-ceeeee---eeeeeeeCCCchHHHHHHHHHHH
Q 018577 251 --GRPVVSAYDAGIRATINGLSM----FNDRPCQSCDIIV---QAER-DLKLSI---ELLDVKLCMIGNHQLHNALTATC 317 (353)
Q Consensus 251 --g~~vv~~dd~~~~~~~~~~~~----~~~~~~~~~d~~~---~~~~-~~~~~~---~~~~~~l~l~G~hq~~Na~~Ala 317 (353)
+..|+|.||+.+...+...+. .++.. .++.. .... .+.+.. ....++++++|.||+.|+++|++
T Consensus 212 ~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a 288 (448)
T TIGR01081 212 GEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQ---GEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIA 288 (448)
T ss_pred CCCEEEEeCCCHHHHHHHHhccCCCeEEECCC---CCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHH
Confidence 334788898877665442221 01100 11111 1111 122211 11246789999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++..+ +++.+.++++|++|.++||||..+
T Consensus 289 ~~~~l-----gi~~~~i~~~L~~~~~~~~R~e~~ 317 (448)
T TIGR01081 289 AARHV-----GVAIEDACEALGSFVNAKRRLELK 317 (448)
T ss_pred HHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 99999 899999999999998899999764
No 28
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=4.8e-30 Score=257.51 Aligned_cols=194 Identities=17% Similarity=0.159 Sum_probs=141.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||+.||+++|+.+|.+++. .+|+|.|..
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~gniG~~~~------------------------- 148 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAV--------------GGNIGVPAL------------------------- 148 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEE--------------EcccCHHHH-------------------------
Confidence 47999999999999999999999999988754 233455431
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC-CC
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-GR 252 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-g~ 252 (353)
.....+.|++|+|+|+.+.. .. ...+|+++|||||++||+|+|| |+|+|+++|.+|++. +.
T Consensus 149 -------------~~~~~~~~~~V~E~ss~~l~-~~---~~~~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~ 210 (438)
T PRK04663 149 -------------DLLEQDAELYVLELSSFQLE-TT---SSLKLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAEL 210 (438)
T ss_pred -------------hhhcCCCCEEEEEcChhhhc-cC---cccCCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCE
Confidence 01235679999999998852 22 3345899999999999999997 999999999999985 55
Q ss_pred ceeecCchhHHHHHHH-hHHhcCCCCcccceEEEeec--ceeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHHHhcC
Q 018577 253 PVVSAYDAGIRATING-LSMFNDRPCQSCDIIVQAER--DLKLSIE---LLDVKLCMIGNHQLHNALTATCAALCLRDQG 326 (353)
Q Consensus 253 ~vv~~dd~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~--~~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~ 326 (353)
.|+|.||+........ ....++.. ..++...... .+..... ...++++++|.||++|+++|++++..+
T Consensus 211 ~v~n~dd~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l---- 284 (438)
T PRK04663 211 AVVNRDDKQTYPDHAELQLVTFGFD--QQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAA---- 284 (438)
T ss_pred EEEeCCCHHHHhhhcCCcEEEEecC--CCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHc----
Confidence 6899999865432210 00112211 0011111111 1111111 124678999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCcceeec
Q 018577 327 GYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 327 ~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
|++.++|+++|++|++.|+||..+
T Consensus 285 -Gi~~~~i~~~L~~f~g~~~R~e~v 308 (438)
T PRK04663 285 -GVDYRKALDALKSYTGLTHRCQVV 308 (438)
T ss_pred -CCCHHHHHHHHHhCCCCCCceEEe
Confidence 999999999999999899998754
No 29
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=1.2e-29 Score=254.90 Aligned_cols=198 Identities=19% Similarity=0.160 Sum_probs=141.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||+.||+++|+.+|.++.+ .+|+|.|++..
T Consensus 107 ~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~--------------~Gnig~p~~~~---------------------- 150 (447)
T PRK02472 107 EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALL--------------AGNIGYPASEV---------------------- 150 (447)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEE--------------EcccChhhHHH----------------------
Confidence 357999999999999999999999999977643 33456665420
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~ 252 (353)
.-...+.|++|+|+++.+.. .. ...+|+++|||||++||+++|| |+++|+.+|++|+++..
T Consensus 151 --------------~~~~~~~~~~V~E~ss~~~~-~~---~~~~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~ 211 (447)
T PRK02472 151 --------------AQKATADDTLVMELSSFQLM-GI---ETFRPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQT 211 (447)
T ss_pred --------------HhcCCCCCEEEEEcCchhhC-cc---cccCCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCC
Confidence 00134579999999887753 22 3335789999999999999998 99999999999998654
Q ss_pred ----ceeecCchhHHHHHHHhH---HhcCCCCcc-cceEEEeecceeeeee--eeeeeeCCCchHHHHHHHHHHHHHHHH
Q 018577 253 ----PVVSAYDAGIRATINGLS---MFNDRPCQS-CDIIVQAERDLKLSIE--LLDVKLCMIGNHQLHNALTATCAALCL 322 (353)
Q Consensus 253 ----~vv~~dd~~~~~~~~~~~---~~~~~~~~~-~d~~~~~~~~~~~~~~--~~~~~l~l~G~hq~~Na~~Alaaa~~l 322 (353)
.|+|.||+.+........ ..++..... .+.... ...+..... ...++++++|.||++|+++|++++..+
T Consensus 212 ~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l 290 (447)
T PRK02472 212 EDDYLVINFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIK-DGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLL 290 (447)
T ss_pred CCCEEEEeCCcHHHHHHHhhcCceEEEeecCCCCcCceEEE-CCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHc
Confidence 478888887654433211 011111000 001110 111111111 112368999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 323 RDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 323 ~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++.+.|+++|++|++|||||..+
T Consensus 291 -----gi~~~~i~~~L~~f~~~~~R~e~~ 314 (447)
T PRK02472 291 -----GVSNEAIREVLSTFSGVKHRLQYV 314 (447)
T ss_pred -----CCCHHHHHHHHHhCCCCCCcceEE
Confidence 999999999999998999999764
No 30
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=8.9e-30 Score=255.99 Aligned_cols=197 Identities=22% Similarity=0.243 Sum_probs=139.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||++||+++|+..|+.+++ .+++|.|+...
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~--------------~g~ig~~~~~~----------------------- 150 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLV--------------AGNIGYPLIDA----------------------- 150 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE--------------eCcccHHHHHH-----------------------
Confidence 68999999999999999999999999977653 23345554310
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC-
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR- 252 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~- 252 (353)
.....+.|++|+|+|+.+.. .+...+|+++|||||+.||+++|| |+|+|+++|++|++.+.
T Consensus 151 -------------~~~~~~~~~~v~E~~~~~~~----~~~~~~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~ 212 (450)
T PRK14106 151 -------------VEEYGEDDIIVAEVSSFQLE----TIKEFKPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRP 212 (450)
T ss_pred -------------HhcCCCCCEEEEEcChhhhc----cccccCCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCC
Confidence 00123689999999887543 223445899999999999999998 99999999999998653
Q ss_pred ---ceeecCchhHHHHHHHh-H--HhcCCCCccc-ceEEEeecceeeeee------eeeeeeCCCchHHHHHHHHHHHHH
Q 018577 253 ---PVVSAYDAGIRATINGL-S--MFNDRPCQSC-DIIVQAERDLKLSIE------LLDVKLCMIGNHQLHNALTATCAA 319 (353)
Q Consensus 253 ---~vv~~dd~~~~~~~~~~-~--~~~~~~~~~~-d~~~~~~~~~~~~~~------~~~~~l~l~G~hq~~Na~~Alaaa 319 (353)
.++|.|++......... + ..++...... +.... ...+.+... ...++++++|.||++|+++|++++
T Consensus 213 ~~~~vln~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~ 291 (450)
T PRK14106 213 SDYTVLNYDDPRTRSLAKKAKARVIFFSRKSLLEEGVFVK-NGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAA 291 (450)
T ss_pred CCEEEEeCCcHHHHHHHhhcCceEEEEecCccCcCceEEE-CCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHH
Confidence 37788887654433221 0 0111110000 00000 111111110 012368999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 320 LCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 320 ~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+.| |++.++|+++|++|.+|||||..+
T Consensus 292 ~~l-----gi~~~~i~~~L~~~~~~~gR~e~i 318 (450)
T PRK14106 292 YLL-----GISPDVIANTLKTFKGVEHRIEFV 318 (450)
T ss_pred HHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 999 999999999999998899999875
No 31
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=2.7e-29 Score=254.39 Aligned_cols=194 Identities=20% Similarity=0.206 Sum_probs=139.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~ 174 (353)
++|+||||||||||+.||++||+.+|+++.+ ++|+|.|++..
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gnig~p~~~~------------------------ 163 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQA--------------VGNIGVPVSAA------------------------ 163 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEE--------------eccCChhHHHH------------------------
Confidence 6999999999999999999999999988764 34457666420
Q ss_pred ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCce
Q 018577 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPV 254 (353)
Q Consensus 175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~v 254 (353)
+....+.|++|+|+|+.+. +.. ...+|+++|||||+.||+|++| |+|+|+++|..+++.+..|
T Consensus 164 ------------l~~~~~~~~~V~E~ss~~l-~~~---~~~~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~~~~v 226 (473)
T PRK00141 164 ------------LVAQPRIDVLVAELSSFQL-HWS---PTLTPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRGPVAV 226 (473)
T ss_pred ------------HhcCCCCCEEEEecCCccc-ccC---cccCCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhCCEEE
Confidence 0124568999999999886 222 3345899999999999999997 9999999999999877789
Q ss_pred eecCchhHHHHHHHhH----HhcCCCCcc-cceEEEeecceeee-----eee-eeeeeCCCchHHHHHHHHHHHHHHHHH
Q 018577 255 VSAYDAGIRATINGLS----MFNDRPCQS-CDIIVQAERDLKLS-----IEL-LDVKLCMIGNHQLHNALTATCAALCLR 323 (353)
Q Consensus 255 v~~dd~~~~~~~~~~~----~~~~~~~~~-~d~~~~~~~~~~~~-----~~~-~~~~l~l~G~hq~~Na~~Alaaa~~l~ 323 (353)
+|.||+....+..... ..++..-.. .++.+.. ...... ... ..+.++++|.||++|+++|++++..+
T Consensus 227 ln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~l- 304 (473)
T PRK00141 227 IGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRD-GELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQ- 304 (473)
T ss_pred EECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEEC-CEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHc-
Confidence 9999987765543210 011110000 0000100 000000 001 12468899999999999999999999
Q ss_pred hcCCCCCHHHHHHHHhcCCCCCc-ceee
Q 018577 324 DQGGYLMLSYFLSGFREEHFWRA-EIFL 350 (353)
Q Consensus 324 ~~~~gi~~~~I~~gL~~~~~~pg-R~~~ 350 (353)
+++.+.|+++|++|. ||+ |+..
T Consensus 305 ----gi~~~~i~~~l~~~~-~~~~R~e~ 327 (473)
T PRK00141 305 ----GVAPEAIARALSSFE-VAGHRGQV 327 (473)
T ss_pred ----CCCHHHHHHHHhhCC-CCCCceEE
Confidence 999999999999994 666 5543
No 32
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=2.9e-29 Score=253.80 Aligned_cols=195 Identities=21% Similarity=0.154 Sum_probs=141.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||+.||++||+.+|.++.+ .+|+|.|+.+.
T Consensus 115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GniG~p~~~~----------------------- 157 (468)
T PRK04690 115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRTAL--------------VGNIGVPLLEV----------------------- 157 (468)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEE--------------cCCCCcchHHH-----------------------
Confidence 47999999999999999999999999987654 34567666320
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC--
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG-- 251 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g-- 251 (353)
.-...+.|++|+|+++.+..+.... ..+|+++|||||++||+++|| ++++|..+|++|++..
T Consensus 158 -------------~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~ 221 (468)
T PRK04690 158 -------------LAPQPAPEYWAIELSSYQTGDVARS--GARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRP 221 (468)
T ss_pred -------------hccCCCCcEEEEEecCCcccccccc--cCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCC
Confidence 0113457999999999887655432 245899999999999999997 9999999999999764
Q ss_pred -CceeecCchhHHHHHHHhH--HhcCCCCcccceEEEeecceeeee---eeeeeeeCCCchHHHHHHHHHHHHHHHHHhc
Q 018577 252 -RPVVSAYDAGIRATINGLS--MFNDRPCQSCDIIVQAERDLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQ 325 (353)
Q Consensus 252 -~~vv~~dd~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~ 325 (353)
..|+|.||+.........+ ..++.. .+... ...+.... ....+.++++|.||+.|+++|++++..+
T Consensus 222 ~~~v~n~dd~~~~~~~~~~~~v~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~l--- 293 (468)
T PRK04690 222 RIALLNAADPRLAALQLPDSEVVWFNHP---DGWHV--RGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEAL--- 293 (468)
T ss_pred CeEEEeCccHHHHHHhcCCCeEEEeeCC---cccee--cceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHc---
Confidence 4488999886543311000 001100 00000 00111110 1123568899999999999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 326 GGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 326 ~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++.+.|+++|++|.+|||||..+
T Consensus 294 --gi~~~~i~~~l~~~~~~~gR~e~~ 317 (468)
T PRK04690 294 --GLDAVALAPAAAGFRPLPNRLQEL 317 (468)
T ss_pred --CCCHHHHHHHHHhCCCCCCCcEEE
Confidence 899999999999998899999864
No 33
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.96 E-value=3.6e-29 Score=268.73 Aligned_cols=219 Identities=14% Similarity=0.190 Sum_probs=155.7
Q ss_pred HHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHH
Q 018577 79 RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHK 158 (353)
Q Consensus 79 r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~ 158 (353)
.+.++.+.+ .++.+.++|+||||||||||+.||+++|+..|..++ ++. +++ +++|.|.+.
T Consensus 93 al~~la~~~-~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~---~~~--~~n-----~~ig~p~~~--------- 152 (822)
T PRK11930 93 ALQELAAYH-RSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPR--SYN-----SQIGVPLSV--------- 152 (822)
T ss_pred HHHHHHHHH-HHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEec---CCc--ccC-----cchhHHHHH---------
Confidence 333333333 356678999999999999999999999998775432 332 111 233554421
Q ss_pred HHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHH
Q 018577 159 IKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLE 238 (353)
Q Consensus 159 i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle 238 (353)
.....++|++|+|+|+++..+...+....+|+++|||||+.||+++|| |+|
T Consensus 153 ----------------------------~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g-t~e 203 (822)
T PRK11930 153 ----------------------------WQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR-SIK 203 (822)
T ss_pred ----------------------------hcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-CHH
Confidence 113567999999999988877766554456899999999999999997 999
Q ss_pred HHHHHHHhcccCC-CceeecCchhHHHHHHHhH-----HhcCCCCcccceEEEe-----ec-ceeeee--eeeeeeeCCC
Q 018577 239 TIAMAKSGIIKYG-RPVVSAYDAGIRATINGLS-----MFNDRPCQSCDIIVQA-----ER-DLKLSI--ELLDVKLCMI 304 (353)
Q Consensus 239 ~ia~~Ka~Iik~g-~~vv~~dd~~~~~~~~~~~-----~~~~~~~~~~d~~~~~-----~~-~~~~~~--~~~~~~l~l~ 304 (353)
+|+++|++|++.. ..|+|.||+....++.... ..++..-...++.... .. .+.+.. ....+++|++
T Consensus 204 ~y~~aK~~i~~~~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~ 283 (822)
T PRK11930 204 QKIMEKLKLFKDCDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFEIPFI 283 (822)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEEecCC
Confidence 9999999999864 4588999987765543221 1122110011221111 11 122221 2246889999
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 305 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 305 G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
|.||++|+++|++++..+ |++.+.|.++|++|.++||||..+
T Consensus 284 G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~ 325 (822)
T PRK11930 284 DDASIENLIHCIAVLLYL-----GYSADQIQERMARLEPVAMRLEVK 325 (822)
T ss_pred CHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCeeEEE
Confidence 999999999999999999 999999999999999999999764
No 34
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.96 E-value=1.2e-28 Score=248.90 Aligned_cols=196 Identities=19% Similarity=0.207 Sum_probs=137.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||+.||++||+.+|++...+..-. ++++|.+.
T Consensus 107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~---------~~~~~~~~-------------------------- 151 (461)
T PRK00421 107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGI---------LNAAGTNA-------------------------- 151 (461)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECce---------eccCCccc--------------------------
Confidence 3799999999999999999999999997533321100 11112211
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhccc---C
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---Y 250 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik---~ 250 (353)
...+.|++|+|+++.... +...+|+++|||||++||+++|| |+|+|+++|..+++ +
T Consensus 152 ---------------~~~~~~~~V~E~ss~q~~-----~~~~~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~ 210 (461)
T PRK00421 152 ---------------RLGNSDYFVAEADESDRS-----FLKLHPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPF 210 (461)
T ss_pred ---------------ccCCCCEEEEECCCccch-----HhhcCCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCC
Confidence 123589999999977542 12345789999999999999998 99999988887654 3
Q ss_pred -CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEE---ee-cc--eeeee--e-eeeeeeCCCchHHHHHHHHHHH
Q 018577 251 -GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQ---AE-RD--LKLSI--E-LLDVKLCMIGNHQLHNALTATC 317 (353)
Q Consensus 251 -g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~---~~-~~--~~~~~--~-~~~~~l~l~G~hq~~Na~~Ala 317 (353)
+..|+|.||+....+..... ..++.. ...++... .. .. +.+.. . ...++++++|.||++|+++|++
T Consensus 211 ~~~~V~n~dd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a 289 (461)
T PRK00421 211 YGALVACGDDPELRELLPRVSRPVITYGFS-EDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIA 289 (461)
T ss_pred CCEEEEECCCHHHHHHHHhcCCCEEEecCC-CCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHH
Confidence 55689999987766654321 011110 00122111 01 11 22111 1 1147789999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++..+ +++.+.|+++|++|..+||||..+
T Consensus 290 ~~~~l-----gv~~~~i~~~l~~f~~~~~R~e~~ 318 (461)
T PRK00421 290 VALEL-----GIDDEAIREALATFKGVKRRFEEK 318 (461)
T ss_pred HHHHc-----CCCHHHHHHHHHhCCCCCcccEEE
Confidence 99999 999999999999998999999764
No 35
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.5e-28 Score=241.74 Aligned_cols=198 Identities=23% Similarity=0.243 Sum_probs=148.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
...+|+|+||+||||||+||+++|.++|++++..-.-- +++.|.+.
T Consensus 106 ~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~---------~~~~g~na------------------------- 151 (459)
T COG0773 106 FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGI---------LKNFGTNA------------------------- 151 (459)
T ss_pred CCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcc---------cccCCccc-------------------------
Confidence 46799999999999999999999999999887632210 01111111
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-- 250 (353)
.....+|.|+|+ ..+|...+ ..+|.++|||||+.||+|++| +++++.++...+++.
T Consensus 152 ----------------~~g~~~~fV~EA---DEsD~sFl--~~~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp 209 (459)
T COG0773 152 ----------------RLGSGDYFVAEA---DESDSSFL--HYNPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVP 209 (459)
T ss_pred ----------------ccCCCceEEEEe---cccccccc--cCCCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCC
Confidence 123458999999 45555544 446899999999999999998 999999998887764
Q ss_pred --CCceeecCchhHHHHHHHhH----HhcCCCCcccceEEEe-----ec-ceeeee---eeeeeeeCCCchHHHHHHHHH
Q 018577 251 --GRPVVSAYDAGIRATINGLS----MFNDRPCQSCDIIVQA-----ER-DLKLSI---ELLDVKLCMIGNHQLHNALTA 315 (353)
Q Consensus 251 --g~~vv~~dd~~~~~~~~~~~----~~~~~~~~~~d~~~~~-----~~-~~~~~~---~~~~~~l~l~G~hq~~Na~~A 315 (353)
|..|+|.|||.+++++...+ ..+|.+-. .|+.... .+ .|.+.. ...++.++++|.||+.||++|
T Consensus 210 ~~G~~v~~~dd~~l~~l~~~~~~~~v~tyG~~~~-ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaa 288 (459)
T COG0773 210 FYGRAVVCGDDPNLRELLSRGCWSPVVTYGFDDE-ADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAA 288 (459)
T ss_pred ccceEEEECCCHHHHHHHhcccCCcEEeecCCCc-CcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHH
Confidence 66799999999998777432 23443211 3333222 21 133332 356799999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeeccC
Q 018577 316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG 353 (353)
Q Consensus 316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~g 353 (353)
+++|..+ |++.++|+++|++| .+.+|||+++|
T Consensus 289 ia~a~~~-----Gi~~~~i~~aL~~F-~GvkRRfe~~g 320 (459)
T COG0773 289 IAVAREL-----GIDPEAIAEALASF-QGVKRRFELKG 320 (459)
T ss_pred HHHHHHc-----CCCHHHHHHHHHhC-CCcceeeEEee
Confidence 9999999 99999999999999 78999999765
No 36
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=2.3e-28 Score=246.65 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=139.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||+.||+++|+..|+++.. .+|+|.|+...
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~--------------~gniG~p~~~~---------------------- 159 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWV--------------GGNIGTPLFSN---------------------- 159 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEE--------------CCccChhHHHH----------------------
Confidence 458999999999999999999999999987642 23456665310
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-- 250 (353)
.....+.|++|+|+|+.+..+.. .+|+++|||||++||++++| |+|+|+++|..+++.
T Consensus 160 --------------~~~~~~~~~~VlE~~~~~~~~~~-----~~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~ 219 (458)
T PRK01710 160 --------------IEEIKEEDKVVLELSSFQLMTMD-----VSPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQS 219 (458)
T ss_pred --------------HhhCCCCCEEEEEcCccccccCC-----CCCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCC
Confidence 01123679999999998876442 35899999999999999997 999999999999863
Q ss_pred --CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEeecceeeee-e-eeeeeeCCCchHHHHHHHHHHHHHHHHH
Q 018577 251 --GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQAERDLKLSI-E-LLDVKLCMIGNHQLHNALTATCAALCLR 323 (353)
Q Consensus 251 --g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~l~l~G~hq~~Na~~Alaaa~~l~ 323 (353)
+..|+|.||+....+..... ..++..-...+..+.....+.... . ...++++++|.||++|+++|+++|..
T Consensus 220 ~~~~~v~n~Dd~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~-- 297 (458)
T PRK01710 220 ENDLLVLNKDNEITNGMEKEAKGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVND-- 297 (458)
T ss_pred CCCEEEEeCCcHHHHHHHhhcCCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHh--
Confidence 55689999987655432210 011110000000000001111110 1 12367899999999999999998864
Q ss_pred hcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 324 DQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 324 ~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
.++.+.|.++|++|.+.+|||..+
T Consensus 298 ----~i~~~~i~~~L~~f~~~~~R~e~~ 321 (458)
T PRK01710 298 ----DVSIESMKKVATTFSGVEHRCEFV 321 (458)
T ss_pred ----CCCHHHHHHHHHhCCCCCcceEEE
Confidence 399999999999999899999754
No 37
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=99.96 E-value=4.1e-28 Score=264.59 Aligned_cols=208 Identities=21% Similarity=0.223 Sum_probs=150.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||+.||+++|+.+|.+...+.+++. ++ +.+|.|++.
T Consensus 602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn--~n-----~~~g~~~~l----------------------- 651 (958)
T PRK11929 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGN--FN-----NEIGVPLTL----------------------- 651 (958)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcc--cC-----CCcchHHHH-----------------------
Confidence 568999999999999999999999999766556666542 11 223444320
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-- 250 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-- 250 (353)
+-.+.+.|++|+|+|+++.++...+....+|+++|||||+.||+++|| |+|+|+++|++|++.
T Consensus 652 --------------~~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~ 716 (958)
T PRK11929 652 --------------LRLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALP 716 (958)
T ss_pred --------------hcCCCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCC
Confidence 112567899999999987766655444446899999999999999997 999999999999963
Q ss_pred --CCceeecCchhHHHHHHHh----HHhcCCCCcccceEEE---------eecc--eeeee--eeeeeeeCCCchHHHHH
Q 018577 251 --GRPVVSAYDAGIRATINGL----SMFNDRPCQSCDIIVQ---------AERD--LKLSI--ELLDVKLCMIGNHQLHN 311 (353)
Q Consensus 251 --g~~vv~~dd~~~~~~~~~~----~~~~~~~~~~~d~~~~---------~~~~--~~~~~--~~~~~~l~l~G~hq~~N 311 (353)
+..|+|.||+....+.... ...++..- ..++... .... +.+.. ....++++++|.||++|
T Consensus 717 ~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~N 795 (958)
T PRK11929 717 EDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQP-GADVYAEKIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRN 795 (958)
T ss_pred CCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCC-CcceEeeecccceeecCCCceEEEEEECCceEEEEeCCCcHHHHHH
Confidence 4558899998765543321 11122110 0011110 0011 22211 22457899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 312 ALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 312 a~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++|++++..+ |++.+.|.++|++|.++||||..+
T Consensus 796 alaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~ 830 (958)
T PRK11929 796 ALAAIACALAA-----GASLKQIRAGLERFQPVAGRMQRR 830 (958)
T ss_pred HHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCCceEE
Confidence 99999999999 999999999999999999999764
No 38
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.1e-27 Score=241.35 Aligned_cols=234 Identities=20% Similarity=0.210 Sum_probs=167.3
Q ss_pred HHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHH
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIK 160 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~ 160 (353)
...+..+++|+.++++|+||||||||||++++.++++..|+++++..+-+-.. . . |...
T Consensus 78 ~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~-----~-~--~~~~------------- 136 (475)
T COG0769 78 TLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDEL-----S-P--GILE------------- 136 (475)
T ss_pred HHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeec-----c-C--Cccc-------------
Confidence 34455688999889999999999999999999999999999999865432100 0 0 1111
Q ss_pred HHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHH
Q 018577 161 GVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETI 240 (353)
Q Consensus 161 ~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~i 240 (353)
..+...|+.+++... |.-+.++.++++|+|+++++. ....+.....+++++||++.||+|+++ |+|+|
T Consensus 137 -------~~~~tTP~~~~l~~~--~~~~~d~~~e~~vmEvssh~l--~~~Rv~~~~f~v~~ftnls~DHlD~h~-t~e~Y 204 (475)
T COG0769 137 -------PTGLTTPEALDLQNL--LRDLLDRGAEIAVMEVSSHGL--VQGRVEGVTFDVGVFTNLSRDHLDYHG-TMEYY 204 (475)
T ss_pred -------ccCCCCccHHHHHHH--HHHHHHcCCcEEEEEeehhHH--HhCCccCceEEEEeccccCchhhcccC-cHHHH
Confidence 001223333333332 234678999999999999987 566666666789999999999999885 99999
Q ss_pred HHHHHhccc----CCCceeecCchhHHHHHHHhH------HhcCCCCccc-----ceEEEeec-c--eeeeeeeeeeeeC
Q 018577 241 AMAKSGIIK----YGRPVVSAYDAGIRATINGLS------MFNDRPCQSC-----DIIVQAER-D--LKLSIELLDVKLC 302 (353)
Q Consensus 241 a~~Ka~Iik----~g~~vv~~dd~~~~~~~~~~~------~~~~~~~~~~-----d~~~~~~~-~--~~~~~~~~~~~l~ 302 (353)
+..|..+|+ .+..|+|.||+.......... ..+++..... ++.....+ . +........+++|
T Consensus 205 ~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~ 284 (475)
T COG0769 205 GAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELP 284 (475)
T ss_pred HHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCCceeEecc
Confidence 999999985 244699999987633222111 1223221111 11211111 1 1122345678999
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeecc
Q 018577 303 MIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN 352 (353)
Q Consensus 303 l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~ 352 (353)
|+|.||++|+++|++++..+ |+|.+.|+++|+++++.||||+.+.
T Consensus 285 L~G~fNv~NaLaA~a~~~~l-----G~~~e~i~~~l~~~~~v~GRmE~v~ 329 (475)
T COG0769 285 LPGLFNVYNALAAVAAALAL-----GVDLEDILAGLETLKPVPGRMELVN 329 (475)
T ss_pred ccchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCCCcceEec
Confidence 99999999999999999999 9999999999999999999998875
No 39
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.96 E-value=9.6e-28 Score=253.52 Aligned_cols=230 Identities=26% Similarity=0.316 Sum_probs=155.2
Q ss_pred HHHHHHHcCC--CCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHH
Q 018577 80 MNRLMDRLGN--PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157 (353)
Q Consensus 80 ~~~~l~~lg~--p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~ 157 (353)
-..+++.|-. +..+.|+|+||||||||||++||+++|+.+|+++|+.+|+++...++.+..+....|.+
T Consensus 464 ~~~Iid~L~~~~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s--------- 534 (727)
T PRK14016 464 GEAIVDMLFPEGDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKS--------- 534 (727)
T ss_pred HHHHHHHhcccCCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHH---------
Confidence 3566666543 33467999999999999999999999999999999999987653333222110011111
Q ss_pred HHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhC-CC
Q 018577 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-GS 236 (353)
Q Consensus 158 ~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG-~t 236 (353)
+..++...++|++|+|+|.++...... ...+|+++|||||+.||++++| +|
T Consensus 535 --------------------------~~~ll~~~~~d~aVlE~s~~~il~~gl--~~~~pdvaVvTNI~~DHL~~~~~~t 586 (727)
T PRK14016 535 --------------------------ARRVLMNPDVEAAVLETARGGILREGL--AYDRCDVGVVTNIGEDHLGLGGINT 586 (727)
T ss_pred --------------------------HHHHhcCCCCCEEEEEcCCCchhhcCC--cccccCeEEEcCCCHHHhhccCCCC
Confidence 001245678999999999888753332 2335789999999999999886 79
Q ss_pred HHHHHHHHHhcccC----CCceeecCchhHHHHHHHhH---HhcCC----CCccc-----ceEEEeec-ceeeee-----
Q 018577 237 LETIAMAKSGIIKY----GRPVVSAYDAGIRATINGLS---MFNDR----PCQSC-----DIIVQAER-DLKLSI----- 294 (353)
Q Consensus 237 le~ia~~Ka~Iik~----g~~vv~~dd~~~~~~~~~~~---~~~~~----~~~~~-----d~~~~~~~-~~~~~~----- 294 (353)
+|+|+.+|+.+++. |..|+|+||+.+..+..... ..++. ++... ...+.... .+.+..
T Consensus 587 ~E~~~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~ 666 (727)
T PRK14016 587 LEDLAKVKRVVVEAVKPDGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEI 666 (727)
T ss_pred HHHHHHHHHHHHhhhCCCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcce
Confidence 99999999999863 56799999997766543210 01110 00000 00000000 000000
Q ss_pred ---eeeeeeeCCCc--hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CCcceeec
Q 018577 295 ---ELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFLM 351 (353)
Q Consensus 295 ---~~~~~~l~l~G--~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~----~pgR~~~~ 351 (353)
...++.+.++| .||++|+++|+++|+.+ |++.+.|+++|++|.+ .||||..+
T Consensus 667 ~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l-----Gi~~~~I~~~L~sF~~~~~~~pGR~n~~ 727 (727)
T PRK14016 667 RIISLADIPLTLGGKAGFNIENALAAIAAAWAL-----GIDIELIRAGLRTFVSDAAQAPGRFNLF 727 (727)
T ss_pred eeccccccceecCCcchhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCccCCCcccccC
Confidence 01123443466 79999999999999999 9999999999999975 89999653
No 40
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.95 E-value=1.6e-27 Score=212.36 Aligned_cols=172 Identities=30% Similarity=0.391 Sum_probs=115.1
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhH
Q 018577 99 IAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFE 178 (353)
Q Consensus 99 VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE 178 (353)
||||||||||++||++||+++|+.++.+++- +..+.
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~--------------~~~~~------------------------------ 36 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT--------------NNQIG------------------------------ 36 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSC--------------HHHHH------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccc--------------cchHH------------------------------
Confidence 8999999999999999999999888764310 01110
Q ss_pred HHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC----CCce
Q 018577 179 VLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY----GRPV 254 (353)
Q Consensus 179 ~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~----g~~v 254 (353)
....+....+.++|++|+|+|+++..+ ..+....+|+++|||||++||+++++ ++++|+++|+++++. +..|
T Consensus 37 --~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v 112 (188)
T PF08245_consen 37 --LPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAV 112 (188)
T ss_dssp --HHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEE
T ss_pred --HHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEE
Confidence 011122334578999999999997766 33333256899999999999999995 999999999999984 4569
Q ss_pred eecCchhHHHHHHHhH---HhcCCCCcccceE---EEe--ec-ceeee---eeeeeeeeCCCchHHHHHHHHHHHHH
Q 018577 255 VSAYDAGIRATINGLS---MFNDRPCQSCDII---VQA--ER-DLKLS---IELLDVKLCMIGNHQLHNALTATCAA 319 (353)
Q Consensus 255 v~~dd~~~~~~~~~~~---~~~~~~~~~~d~~---~~~--~~-~~~~~---~~~~~~~l~l~G~hq~~Na~~Alaaa 319 (353)
+|.|||.+........ ..++..-. .++. +.. ++ .+.+. ....+++++++|.||++|+++|+++|
T Consensus 113 ~n~dd~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 113 LNADDPELAEIAANSKCKVITFGLDNS-ADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp EETTSHHHHHHHHHHTTTEEEEESSSS-SEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCcEEEeccCcc-cceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 9999996655554331 11221111 1211 111 11 12211 23456899999999999999999986
No 41
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=99.95 E-value=2.6e-27 Score=238.31 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=135.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||+.||++||+.+|++...+. .++++.+....
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~------------gg~~~~~~~~~----------------------- 143 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVV------------GGLVKEAGTNA----------------------- 143 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEE------------CcccccCCccc-----------------------
Confidence 3799999999999999999999999998433221 11223332210
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC---
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--- 250 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--- 250 (353)
.....|++|+|+++.+... ...+|+++|||||++||+|++++|+|+|+.+|.+|++.
T Consensus 144 ---------------~~~~~~~~V~E~s~~q~~~-----~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~ 203 (448)
T TIGR01082 144 ---------------RLGSGEYLVAEADESDASF-----LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPF 203 (448)
T ss_pred ---------------ccCCCCEEEEECCCccchH-----hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCC
Confidence 1134699999999876532 23457899999999999994445999999999999974
Q ss_pred -CCceeecCchhHHHHHHHhH---HhcCCCCcccceEE---Eeec-c--eeeeee---eeeeeeCCCchHHHHHHHHHHH
Q 018577 251 -GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIV---QAER-D--LKLSIE---LLDVKLCMIGNHQLHNALTATC 317 (353)
Q Consensus 251 -g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~---~~~~-~--~~~~~~---~~~~~l~l~G~hq~~Na~~Ala 317 (353)
+..|+|.||+....+..... ..++..-...++.. .... . +.+... ...++++++|.||++|+++|++
T Consensus 204 ~~~~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a 283 (448)
T TIGR01082 204 YGLAVICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIA 283 (448)
T ss_pred CCEEEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHH
Confidence 34588999987765543210 01111100012211 1011 1 111111 1346789999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++..+ +++.+.|.++|++|.+.++||..+
T Consensus 284 ~~~~l-----gi~~~~i~~~l~~f~~~~~R~e~~ 312 (448)
T TIGR01082 284 VALEL-----GIDFEAILRALANFQGVKRRFEIL 312 (448)
T ss_pred HHHHc-----CCCHHHHHHHHHhCCCCCccceEE
Confidence 99999 999999999999997667777653
No 42
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.94 E-value=1.5e-26 Score=248.17 Aligned_cols=194 Identities=16% Similarity=0.174 Sum_probs=138.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||++||++||+.+|+++..+.. |++|.++..
T Consensus 104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~g------------G~~g~~~~~------------------------ 147 (809)
T PRK14573 104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIG------------GLNQEGLNG------------------------ 147 (809)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEEC------------Ccccccccc------------------------
Confidence 37999999999999999999999999986433221 122554431
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC---
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--- 250 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--- 250 (353)
...+.|++|+|+|+.. .+ +...+|+++|||||++||+|+|+.|+|+|+++|..+++.
T Consensus 148 ---------------~~~~~d~~V~E~ss~~-~~----~~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~ 207 (809)
T PRK14573 148 ---------------YSGSSEYFVAEADESD-GS----LKHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQ 207 (809)
T ss_pred ---------------ccCCCCEEEEECCCCc-ch----hheeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence 1234799999999874 22 224458999999999999999945999999999888753
Q ss_pred -CCceeecCchhHHHHHHHhHHhcCCCCcccceE---EEeecc---eeeee---eeeeeeeCCCchHHHHHHHHHHHHHH
Q 018577 251 -GRPVVSAYDAGIRATINGLSMFNDRPCQSCDII---VQAERD---LKLSI---ELLDVKLCMIGNHQLHNALTATCAAL 320 (353)
Q Consensus 251 -g~~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~---~~~~~---~~~~~~l~l~G~hq~~Na~~Alaaa~ 320 (353)
+..|+|.||+....... ...++... ..++. +..... +.+.. ....++++++|.||++|+++|++++.
T Consensus 208 ~~~~V~N~Dd~~~~~~~~--~~~~g~~~-~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~ 284 (809)
T PRK14573 208 INKCFYNGDCPRLKGCLQ--GHSYGFSS-SCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIAL 284 (809)
T ss_pred CCEEEEeCCCHHHHhhcc--cEEEccCC-CCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHH
Confidence 45689999986543221 11122110 01111 111111 22111 12357789999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 321 CLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 321 ~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
.+ +++.+.|+++|++|.+|||||..+
T Consensus 285 ~l-----gi~~~~i~~~L~~f~~~~~R~e~~ 310 (809)
T PRK14573 285 TL-----GIDEGAIRNALKGFSGVQRRLERK 310 (809)
T ss_pred Hc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence 99 999999999999998899999754
No 43
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=3.5e-26 Score=228.26 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=128.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
+.++|+||||||||||+.||+++|+..|..+.+ .+|+|.|+..
T Consensus 101 ~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~--------------~GniG~p~l~----------------------- 143 (418)
T PRK00683 101 RYPSLGITGSTGKTTTILFLEHLLKRLGIPAFA--------------MGNIGIPILD----------------------- 143 (418)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHHHcCCCeEE--------------ECCcCHHHHH-----------------------
Confidence 357999999999999999999999999976654 4555665410
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~ 252 (353)
...+.|++|+|+|+.+..+... ..+.|+++|||||++||+|+|| |+|+|+++|+.|+..
T Consensus 144 ----------------~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~-- 202 (418)
T PRK00683 144 ----------------GMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKC-- 202 (418)
T ss_pred ----------------HhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHh--
Confidence 1124789999999997754333 2233589999999999999997 999999999999863
Q ss_pred ceeecCchhHHHHHHHhHHhcCCCCcccceEEEeecc-eeeeeeeeeeeeCCCchHHHHHHHHHHHHHHH-HHhcCCCCC
Q 018577 253 PVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERD-LKLSIELLDVKLCMIGNHQLHNALTATCAALC-LRDQGGYLM 330 (353)
Q Consensus 253 ~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~-l~~~~~gi~ 330 (353)
+.+.++... .. ...++.. .. ..... +.... ....++++|.||++|+++|++++.. + +++
T Consensus 203 -~~~~~~~~~----~~-~~~~~~~-----~~-~~~~~~~~~~~--~~~~~~~~g~hn~~Na~aA~a~~~~l~-----g~~ 263 (418)
T PRK00683 203 -LRNPDDLWV----GD-ERSYGHS-----YL-EYVQEIMRLLD--KGSALKPLYLHDRYNYCAAYALANEVF-----PIS 263 (418)
T ss_pred -hhCcccccc----cc-cCCcCce-----ee-cCcchhhhhhc--cccccCCCccchHHHHHHHHHHHHHhc-----CCC
Confidence 122222111 00 0011111 00 00000 00000 1135678999999999999999998 6 899
Q ss_pred HHHHHHHHhcCCCCCcceeec
Q 018577 331 LSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 331 ~~~I~~gL~~~~~~pgR~~~~ 351 (353)
.++|+++|++|++|||||..+
T Consensus 264 ~~~i~~~l~~~~~~~~R~e~v 284 (418)
T PRK00683 264 EESFLEAVATFEKPPHRMEYL 284 (418)
T ss_pred HHHHHHHHHhCCCCCCceEEE
Confidence 999999999999999999764
No 44
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.91 E-value=2.2e-23 Score=206.83 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=120.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI 174 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~ 174 (353)
++|+||||||||||+.||+++|+.+|..++ +|+|.|++.
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~----------------gniG~p~~~------------------------- 128 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSG----------------GNIGTPLAE------------------------- 128 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEE----------------EEecHhHHh-------------------------
Confidence 589999999999999999999999984332 234665531
Q ss_pred ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC----
Q 018577 175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---- 250 (353)
Q Consensus 175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~---- 250 (353)
...+.|++|+|+|+.+. +.+..+ +|+++|||||++||+|++| |+++|+++|..|++.
T Consensus 129 --------------~~~~~~~~V~E~ss~~~-~~~~~~---~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~ 189 (401)
T PRK03815 129 --------------LDKNAKIWVLETSSFTL-HYTNKA---KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEG 189 (401)
T ss_pred --------------cCCCCCEEEEECChHHh-hCCccC---CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcC
Confidence 13457999999987762 334333 4789999999999999997 999999999999874
Q ss_pred CCceeecCchhHHHHHHHhHHhcCCCCcccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCC
Q 018577 251 GRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLM 330 (353)
Q Consensus 251 g~~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~ 330 (353)
+..|+|.||+.... ......++.. .++. ..+.+. . -.+.+.+.| +.|+++|++++..+ |+
T Consensus 190 ~~~v~n~dd~~~~~--~~~~~~fg~~---~~~~----~~~~~~--~--~~~~~~~~~-~~NalaA~a~a~~~-----G~- 249 (401)
T PRK03815 190 DVAILPKKFKNTPT--KAQKIFYEDE---EDLA----EKFGID--S--EKINFKGPF-LLDALLALAVYKIL-----FD- 249 (401)
T ss_pred CEEEEecccccccc--CCcEEEEecC---Cccc----cceeEe--h--HhcCCchHH-HHHHHHHHHHHHHh-----Cc-
Confidence 44588998875210 0000001100 0000 001110 0 123344554 99999999999999 64
Q ss_pred HHHHHHHHhcCCCCCcceeec
Q 018577 331 LSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 331 ~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+.+.++|++|++.++|+..+
T Consensus 250 -~~~~~~L~~f~~~~~R~e~~ 269 (401)
T PRK03815 250 -ELDYERLNAFKIGKHKLEEF 269 (401)
T ss_pred -HHHHHHHHhCCCCCceEEEE
Confidence 55778999998888888653
No 45
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.96 E-value=3.7e-05 Score=72.74 Aligned_cols=153 Identities=21% Similarity=0.321 Sum_probs=90.1
Q ss_pred HHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe----cCCcc--cccceeeeeCCCCcccCHHHH
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHI--KTIRERMNVGRLNRPVSAKAL 152 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~----tSp~l--~~~~eri~in~~G~~is~~~~ 152 (353)
++++..+-....+..+|+|||+ .||+|...-|..-|.+.|++|++. +||.- .-..+|++.+ .....+..|
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~--~~~~~~~vF 115 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ--RLAVDPGVF 115 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH--hhccCCCeE
Confidence 3555554433445679999998 789999999999999999999986 56631 1123444444 222111111
Q ss_pred HHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEee-cCCCc-ccccccccccCCcEEEEccCChhhH
Q 018577 153 NCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGA-RDATNIISSSGLAASVITTIGEEHT 230 (353)
Q Consensus 153 ~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEv-G~gg~-~D~tn~v~~~~p~vaVITnI~~DHl 230 (353)
.+- + ...+.+.-.---|.-+...+...++|++++|+ |.|+- -|..+.++ +.+++.+.
T Consensus 116 iRs----------~--~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aD-----t~~~v~~p---- 174 (323)
T COG1703 116 IRS----------S--PSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMAD-----TFLVVMIP---- 174 (323)
T ss_pred Eee----------c--CCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcc-----eEEEEecC----
Confidence 100 0 11233444444455555667788999999998 66653 24444444 33333332
Q ss_pred hhhCCCHHHHHHHHHhcccCC-CceeecCch
Q 018577 231 AALGGSLETIAMAKSGIIKYG-RPVVSAYDA 260 (353)
Q Consensus 231 ~~lG~tle~ia~~Ka~Iik~g-~~vv~~dd~ 260 (353)
-.| +++-..|+|++.=+ ..|||..|.
T Consensus 175 -g~G---D~~Q~iK~GimEiaDi~vINKaD~ 201 (323)
T COG1703 175 -GAG---DDLQGIKAGIMEIADIIVINKADR 201 (323)
T ss_pred -CCC---cHHHHHHhhhhhhhheeeEeccCh
Confidence 134 33444589998864 458897653
No 46
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.79 E-value=1.6e-05 Score=73.94 Aligned_cols=157 Identities=22% Similarity=0.322 Sum_probs=85.8
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe----cCCcc--cccceeeeeCC----CCccc
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHI--KTIRERMNVGR----LNRPV 147 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~----tSp~l--~~~~eri~in~----~G~~i 147 (353)
-+.+|+.+-....+..+|+|||+ .||+|...-|...|.+.|.+|++. +||.- .-..+|++.+. .|..|
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 45666665443446789999998 789999999999999999999986 56631 11223333320 01111
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEee-cCCCc-ccccccccccCCcEEEEccC
Q 018577 148 SAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGA-RDATNIISSSGLAASVITTI 225 (353)
Q Consensus 148 s~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEv-G~gg~-~D~tn~v~~~~p~vaVITnI 225 (353)
-. + ...+.+.-.--.|.-+...+...++|++++|+ |.|+- .|...+++. .+-|++.=
T Consensus 95 RS----------------~--atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~---~v~v~~Pg 153 (266)
T PF03308_consen 95 RS----------------M--ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADT---VVLVLVPG 153 (266)
T ss_dssp EE----------------E-----SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSE---EEEEEESS
T ss_pred ee----------------c--CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCe---EEEEecCC
Confidence 00 0 00112222222333344456678999999998 77773 345555543 35666666
Q ss_pred ChhhHhhhCCCHHHHHHHHHhcccC-CCceeecCc-hhHHHHHH
Q 018577 226 GEEHTAALGGSLETIAMAKSGIIKY-GRPVVSAYD-AGIRATIN 267 (353)
Q Consensus 226 ~~DHl~~lG~tle~ia~~Ka~Iik~-g~~vv~~dd-~~~~~~~~ 267 (353)
.-|-++.+ |+||+.- ...|||..| +.+.....
T Consensus 154 ~GD~iQ~~----------KaGimEiaDi~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 154 LGDEIQAI----------KAGIMEIADIFVVNKADRPGADRTVR 187 (266)
T ss_dssp TCCCCCTB-----------TTHHHH-SEEEEE--SHHHHHHHHH
T ss_pred CccHHHHH----------hhhhhhhccEEEEeCCChHHHHHHHH
Confidence 55666654 7888874 556889654 44444433
No 47
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=96.41 E-value=0.017 Score=57.45 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHcCCCC-----CCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 74 GFDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p~-----~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+.|+.+.++.+.++.+. .+.++|+|+ |-.|||||+.-|++.|...|+||.+.
T Consensus 81 ~ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 81 GYTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred eEcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 388999999998887543 346899999 78899999999999999999999874
No 48
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=96.26 E-value=0.016 Score=57.80 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=65.9
Q ss_pred eCCCccchhhhcccccc--cccccCCCCCccHHHHHHHHHhchhhhhcCCCCCCCCCC-CCCCChHHHHHHHHHcCCCC-
Q 018577 16 YSPTSRGYFKKFSIGSK--SCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDS-DDGFDLGRMNRLMDRLGNPH- 91 (353)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~-~~~~~l~r~~~~l~~lg~p~- 91 (353)
++|..|..+..|++..- .|-. + .+.+.|.+......... ....|... .-++.|+.++++++.++.+.
T Consensus 29 ~~p~~~k~~r~~~i~e~A~~~gv---s-----~~tiR~ye~~gll~~~~-~~~~gr~~~~~~ftL~ei~~lr~~~~~~~~ 99 (388)
T PRK13705 29 DSPEARKITRRWRIGEAADLVGV---S-----SQAIRDAEKAGRLPHPD-MEMRGRVEQRVGYTIEQINHMRDVFGTRLR 99 (388)
T ss_pred CCCccccccCCCCHHHHHHHHCc---C-----HHHHHHHHHcCCCCCCC-cCCCCcchhhcCcCHHHHHHHHHhhccccc
Confidence 47999999888877432 2221 1 24455554433221100 00011100 11488999999988876543
Q ss_pred ----CCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 92 ----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 92 ----~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
...++|+|+ |-.|||||+.-|++.|...|+||.+.
T Consensus 100 r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 100 RAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred ccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 346889999 88999999999999999999999875
No 49
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.22 E-value=0.056 Score=51.84 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+.+++.+.......++|+|+|. .||||++..+...|...|++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i 68 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVI 68 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46677777655556789999996 689999999999999999999875
No 50
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=96.04 E-value=0.031 Score=55.97 Aligned_cols=52 Identities=29% Similarity=0.575 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHcCC-----------C----CCCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 75 FDLGRMNRLMDRLGN-----------P----HSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~-----------p----~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.++.+.++-+.++. | ..+.++|+|+ |-.|||||+.-|++.|...|+||.+.
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 666666666555531 2 2356899999 77899999999999999999999774
No 51
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.34 E-value=0.23 Score=48.42 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=35.4
Q ss_pred HHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+++.+-....+..+|+|+|. .||||.+..+...|+..|+++++.
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi 90 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVL 90 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3455554322345679999998 589999999999999999999875
No 52
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.34 E-value=0.061 Score=54.62 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=29.8
Q ss_pred CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
++.|-|||| .|||+++..|...|++.|++|+.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 456888887 46999999999999999999988743
No 53
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=94.61 E-value=0.44 Score=45.01 Aligned_cols=51 Identities=29% Similarity=0.315 Sum_probs=37.5
Q ss_pred HHHHHHHcCCC-CCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCC--eEEecCCc
Q 018577 80 MNRLMDRLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYS--VGCYTSPH 130 (353)
Q Consensus 80 ~~~~l~~lg~p-~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~--vg~~tSp~ 130 (353)
.+.++..|+.. ....-+|+|+|+ .||+||++.+..+|+..+-. +-+++.-+
T Consensus 67 ~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG 122 (283)
T COG1072 67 FAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG 122 (283)
T ss_pred HHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence 44555666644 334568999998 79999999999999998865 55555443
No 54
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=94.25 E-value=0.14 Score=50.88 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=30.5
Q ss_pred CCCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 91 HSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 91 ~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+.++|.|+ |-.|||||+.-|+..|...|++|.+.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3456788887 56789999999999999999999764
No 55
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=94.14 E-value=0.12 Score=52.47 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=26.2
Q ss_pred EEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 97 I~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 345554 7999999999999999999999874
No 56
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=1.6 Score=42.15 Aligned_cols=154 Identities=19% Similarity=0.167 Sum_probs=85.1
Q ss_pred CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecCCc--ccccceeeeeCCCCcccCHHHHHH-HHHHHHHHHH
Q 018577 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPH--IKTIRERMNVGRLNRPVSAKALNC-LFHKIKGVLD 164 (353)
Q Consensus 91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tSp~--l~~~~eri~in~~G~~is~~~~~~-~~~~i~~~~~ 164 (353)
..+.++|.|-|| .||=||+..|...+++.|+++++..+-. +....+-+.++ -. ..+|.. +++.
T Consensus 145 k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvd--av---~~DfaAGave~------ 213 (339)
T COG3367 145 KVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVD--AV---VMDFAAGAVES------ 213 (339)
T ss_pred ccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEec--ch---hHHHHHHHHHH------
Confidence 345789999999 6999999999999999999998764421 11122222222 11 122211 1111
Q ss_pred HHHhhcCCccChhHHHHHHHHHHH-hhCCCCEEEEeecCCCccc-----ccccccccCCcEEEEccCChhhHhhhC----
Q 018577 165 EAIRLENGCITHFEVLTAMAFALF-AQNHVDIAVIEAGLGGARD-----ATNIISSSGLAASVITTIGEEHTAALG---- 234 (353)
Q Consensus 165 ~~~~~~~~~~t~FE~~t~~a~~~f-~~~~~d~~VlEvG~gg~~D-----~tn~v~~~~p~vaVITnI~~DHl~~lG---- 234 (353)
..+- .+.+.|++++|- -|...+ .+.++....|+. ++.-=.++|.-+.|
T Consensus 214 --------------------~v~~~~e~~~Dii~VEG-Qgsl~HP~y~vtl~il~gs~PDa-vvL~H~P~r~~~~g~P~~ 271 (339)
T COG3367 214 --------------------AVYEAEEKNPDIIFVEG-QGSLTHPAYGVTLGILHGSAPDA-VVLCHDPNRKYRDGFPEP 271 (339)
T ss_pred --------------------HHHHhhhcCCCEEEEec-cccccCCCcccchhhhcCCCCCe-EEEEecCCCccccCCCCc
Confidence 1122 235899999995 122111 223455556764 44444555544332
Q ss_pred -CCHHHHHHHHHhcccCCCc--eeec---CchhHHHHHHHhHHhcCCCC
Q 018577 235 -GSLETIAMAKSGIIKYGRP--VVSA---YDAGIRATINGLSMFNDRPC 277 (353)
Q Consensus 235 -~tle~ia~~Ka~Iik~g~~--vv~~---dd~~~~~~~~~~~~~~~~~~ 277 (353)
+.++++..--.-+-...+. ++|. |++++++...+....++.|.
T Consensus 272 ip~leevi~l~e~l~~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~ 320 (339)
T COG3367 272 IPPLEEVIALYELLSNAKVVGIALNTRNLDEEEARELCAKLEAEFGLPV 320 (339)
T ss_pred CCCHHHHHHHHHHccCCcEEEEEecccccChHHHHHHHHHHhhccCCcc
Confidence 3666665543322222221 4443 45667777777766677553
No 57
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=93.97 E-value=0.067 Score=49.51 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=35.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCccccc
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTI 134 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~ 134 (353)
+|+|+|.-||||+..-|+.-|...|++|.+-||-|+.-.
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~~P 39 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMFLP 39 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCccccCC
Confidence 589999999999999999999999999999999988543
No 58
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=93.45 E-value=0.16 Score=45.49 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+.++|.|+++ .||||++..|+..|...|++|.+.
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344788999865 579999999999999999998763
No 59
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=93.02 E-value=0.26 Score=44.36 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCCCCcEEEEc---CCCCchHHHHHHHHHHHH-cCCCeEEe
Q 018577 90 PHSKFKTVHIA---GTKGKGSTAAFLSSILRA-EGYSVGCY 126 (353)
Q Consensus 90 p~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~-~G~~vg~~ 126 (353)
+....++|+|+ |--||||++..|+..|.. .|++|.+.
T Consensus 31 ~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred cCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 44567899999 567999999999999986 69999764
No 60
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.89 E-value=0.22 Score=47.06 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=29.5
Q ss_pred CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..++|.|+.. -|||||+..|+..|.+.|+||++.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 4567888754 689999999999999999999985
No 61
>COG2403 Predicted GTPase [General function prediction only]
Probab=92.22 E-value=0.45 Score=46.77 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=34.2
Q ss_pred CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecCCcc
Q 018577 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI 131 (353)
Q Consensus 93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tSp~l 131 (353)
..|+|.|+|| .|||+++++++++|++.||++..-.=|-+
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmi 166 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMI 166 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCce
Confidence 4589999998 79999999999999999999988766654
No 62
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.02 E-value=1.9 Score=40.80 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+.++|.++|. .|||||+.-|+..|...|++|++.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4578888886 5899999999999999999998753
No 63
>PRK07667 uridine kinase; Provisional
Probab=91.74 E-value=0.4 Score=42.76 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 85 DRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 85 ~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
+.+..-..+..+|+|+|- .||||++..|...|...|.++..+....
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 444333334479999995 8999999999999999999887765543
No 64
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=0.61 Score=46.12 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=27.9
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..||-+.|- .||||||.-++..++..||++++.+
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence 346666664 4799999999999999999999854
No 65
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.86 E-value=2.4 Score=36.17 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=24.7
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|++.|- .||||++..+...+.+.|.++.++
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii 33 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVL 33 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 455554 689999999999999999998764
No 66
>PRK15453 phosphoribulokinase; Provisional
Probab=90.86 E-value=0.36 Score=46.02 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=29.0
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+.++|+|||+ .||||++..++.+|...|.++.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi 39 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV 39 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence 45689999998 689999999999999877665443
No 67
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=90.78 E-value=1.2 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=27.0
Q ss_pred EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.|-|||| .|||+++..|.+.|+..|++|..|-
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K 37 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAK 37 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEe
Confidence 4566665 7999999999999999999997763
No 68
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.65 E-value=0.37 Score=36.48 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.1
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
|.|+|. .||||++..++..|++.|+++.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 556655 6999999999999999999997743
No 69
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=90.32 E-value=0.38 Score=42.03 Aligned_cols=37 Identities=32% Similarity=0.462 Sum_probs=32.0
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
.++++|+|. .||||...-|-..|++.||+|+..-..|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 479999997 6999999999999999999998864443
No 70
>PRK06761 hypothetical protein; Provisional
Probab=90.32 E-value=6.6 Score=37.44 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=46.8
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA 166 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~ 166 (353)
++|.|+| -.||||++..|+.-|...|+++..+.-+......+- .+ +..++++++...+.+.....+.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~--~~~~~~eer~~~l~~~~~f~~~l 73 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DG--VACFTKEEFDRLLSNYPDFKEVL 73 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--cc--ccCCCHHHHHHHHHhhhHHHHHH
Confidence 5788888 479999999999999988998877544322111121 13 55678888888887777644433
No 71
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.28 E-value=1.1 Score=43.43 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+..+|++.|- .|||||+..|+..|...|++|.+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3567888886 5799999999999999999998743
No 72
>PRK14974 cell division protein FtsY; Provisional
Probab=90.04 E-value=2.6 Score=41.26 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+..+|.++|. .|||||++.++..|...|++|++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3568999997 5799999999999999999998743
No 73
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.03 E-value=0.68 Score=43.40 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCC--CCCCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 78 GRMNRLMDRLGN--PHSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 78 ~r~~~~l~~lg~--p~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.++.+...+.. .....++|.|| |--||||++..|+..|...|++|.+.
T Consensus 85 e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 85 EALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 556666666543 34567899999 56799999999999999999999763
No 74
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=89.94 E-value=0.93 Score=45.48 Aligned_cols=31 Identities=39% Similarity=0.465 Sum_probs=25.2
Q ss_pred EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|.|+|| .||||++.-|-..|+..|++|--|
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 3667776 699999999999999998776443
No 75
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=89.88 E-value=1.7 Score=46.66 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.3
Q ss_pred EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.|-|+|| .|||+++.-|.+.|++.|++||.|-
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 3555554 7999999999999999999999875
No 76
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=89.78 E-value=0.83 Score=44.40 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCCCCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 78 GRMNRLMDRLGNPHSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 78 ~r~~~~l~~lg~p~~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
...++.+.+.|...-..|||.| .|-+|||-++-.|+.-|++.|+++|.++
T Consensus 31 ~~~r~~~~~~g~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 31 AGLRRKLAKKGSYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS 84 (336)
T ss_pred HHHHHHHhccccccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEe
Confidence 4456666666634456788876 6999999999999999999999999863
No 77
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=89.06 E-value=0.52 Score=40.03 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=25.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|+|+|.|- .||||.+..|-..|...|++++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 57888885 699999999999999999999965
No 78
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=89.06 E-value=2.8 Score=38.28 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=26.1
Q ss_pred EEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|+|+ |-.||||++.-|+..|.+.|++|.+.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44444 56899999999999999999999875
No 79
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=89.03 E-value=0.56 Score=44.04 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=29.2
Q ss_pred cEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 95 ~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
++|+|+ |--|||||+.-|+..|.+.|+||.+. .-|+
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq 40 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPK 40 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccc
Confidence 567776 45789999999999999999999876 4443
No 80
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=88.92 E-value=0.88 Score=44.27 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.6
Q ss_pred CCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 92 SKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
...|+|.| .|-.|||.++.+|+..|++.|++++..
T Consensus 47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il 85 (325)
T PRK00652 47 APVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV 85 (325)
T ss_pred CCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 35689998 899999999999999999999999875
No 81
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=88.63 E-value=0.61 Score=42.06 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=27.9
Q ss_pred EEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 96 TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 96 vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
+|+|+| -.||||++..|+..|.+.|++|.+. .-|+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q 39 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 466664 5789999999999999999999764 4443
No 82
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=88.31 E-value=5.6 Score=35.98 Aligned_cols=27 Identities=33% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 101 GTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 101 GTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
|-.||||++..++..+.+.|++|.++.
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~ 34 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVS 34 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEE
Confidence 447999999999999999999998763
No 83
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=88.07 E-value=1.7 Score=34.18 Aligned_cols=30 Identities=30% Similarity=0.283 Sum_probs=25.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+++--|.-||||++..++..|.+.|.+|.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~ 33 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLL 33 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEE
Confidence 345567889999999999999999988876
No 84
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=87.97 E-value=0.7 Score=42.52 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=29.9
Q ss_pred CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+.+-|||| -|||.+++.|.+.|+.+|++++.|
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence 367899999 599999999999999999999876
No 85
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.96 E-value=4.7 Score=36.20 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=24.2
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
+|.+.|- .|||||++=|++.+...|.+|++.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 4444443 58999999999999988999998653
No 86
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=87.45 E-value=4.4 Score=40.96 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=29.3
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..+|.++|- .|||||+.-|+..|+..|++|++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 468888885 6899999999999999999998753
No 87
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=87.21 E-value=0.85 Score=45.05 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=32.7
Q ss_pred CCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 90 PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 90 p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+..+.++|+|+|. .||||...-|-..|++.|++|+..-
T Consensus 201 ~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 201 TTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred cCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3346789999995 7999999999999999999999864
No 88
>COG4240 Predicted kinase [General function prediction only]
Probab=87.20 E-value=1.2 Score=41.13 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcC-CCeEEe
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEG-YSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G-~~vg~~ 126 (353)
+.-+++|.|. .||||++..|..+|.+.| ++|+.+
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence 3468999997 789999999999999998 688764
No 89
>PRK05439 pantothenate kinase; Provisional
Probab=86.63 E-value=1.7 Score=42.03 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=28.5
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHc--CCCeEEecC
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCYTS 128 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~--G~~vg~~tS 128 (353)
...+|+|||+ .||||++..|..+|... |.+|.+.+-
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~ 124 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTT 124 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEec
Confidence 3468999997 78999999999999864 567766443
No 90
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.47 E-value=1.1 Score=39.18 Aligned_cols=43 Identities=28% Similarity=0.543 Sum_probs=35.5
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCccccccee
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRER 137 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~er 137 (353)
--|+|||- .||||.+.-|+..|+..||++|=|-+|.+-.-..|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR 50 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR 50 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE
Confidence 35999996 78999999999999999999988877766544444
No 91
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.39 E-value=8.5 Score=39.04 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=28.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..+|.++|- .|||||+.-|+..|...|++|++.+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 457777775 6899999999999999999998743
No 92
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=86.38 E-value=1 Score=41.58 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=30.9
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+++|.|+| -.||||++.-|...|+..|++|+..-..
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 36899999 6899999999999999999999987543
No 93
>PRK06696 uridine kinase; Validated
Probab=86.36 E-value=1.6 Score=39.70 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCC-CCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 78 GRMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 78 ~r~~~~l~~lg~-p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.+.++.+.+.. ......+|+|+|- .||||.+..|+..|...|..+..
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 344555555432 2234579999994 89999999999999988876654
No 94
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=85.99 E-value=0.59 Score=41.56 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=24.5
Q ss_pred EEEEcC--CCCchHHHHHHHHHHHHcCCC
Q 018577 96 TVHIAG--TKGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 96 vI~VtG--TnGKtSTt~ml~~IL~~~G~~ 122 (353)
+|+|+| ..||||++..|..+|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 689998 489999999999999998877
No 95
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=85.89 E-value=0.71 Score=42.92 Aligned_cols=27 Identities=33% Similarity=0.307 Sum_probs=24.5
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|-.||||+|.-|++.|...|+||.+.
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 567899999999999999999999874
No 96
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=85.67 E-value=1 Score=39.28 Aligned_cols=31 Identities=29% Similarity=0.216 Sum_probs=26.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.+.-|-.||||++..|+..|...|++|.+.
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLI 33 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEcCCCCccHHHHHHHHHhcccccccccccc
Confidence 4556678899999999999999999999874
No 97
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=85.57 E-value=0.98 Score=40.18 Aligned_cols=32 Identities=38% Similarity=0.582 Sum_probs=27.8
Q ss_pred cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.|-|+|| .|||+++..|.+.|++.|.++|.|
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~ 35 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYF 35 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 35677777 699999999999999999999976
No 98
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=85.53 E-value=1 Score=42.70 Aligned_cols=32 Identities=16% Similarity=0.325 Sum_probs=27.7
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+|+|||. .||||++.-+.++|...|.++.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899997 6899999999999999898876653
No 99
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=85.33 E-value=1 Score=41.50 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=28.0
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|| |--|||||++-|...|...|.||.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence 567777 67899999999999999999999774
No 100
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=85.29 E-value=1.1 Score=41.04 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=27.5
Q ss_pred cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|++ -.||||++..|+..|...|++|.+.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 4677765 5789999999999999999999875
No 101
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.99 E-value=1.2 Score=40.64 Aligned_cols=32 Identities=34% Similarity=0.361 Sum_probs=27.4
Q ss_pred cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|++ -.||||++.-|+..|...|++|.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 5677765 6799999999999999999999774
No 102
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.73 E-value=6.7 Score=39.55 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=52.7
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN 171 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~ 171 (353)
..+|-..| -.||||||.=|+.-|+..|++|++-+.- . .-+ .++++++...+...-+-.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD---------------~-~Rp----AA~eQL~~La~q~~v~~f 159 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD---------------T-YRP----AAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecc---------------c-CCh----HHHHHHHHHHHHcCCcee
Confidence 34566666 3799999999999999999999884321 1 111 234555544444322111
Q ss_pred ---CccChhHHHHHHHHHHHhhCCCCEEEEee
Q 018577 172 ---GCITHFEVLTAMAFALFAQNHVDIAVIEA 200 (353)
Q Consensus 172 ---~~~t~FE~~t~~a~~~f~~~~~d~~VlEv 200 (353)
..-+..|+ .--|+..+.+..+|++++-+
T Consensus 160 ~~~~~~~Pv~I-ak~al~~ak~~~~DvvIvDT 190 (451)
T COG0541 160 GSGTEKDPVEI-AKAALEKAKEEGYDVVIVDT 190 (451)
T ss_pred cCCCCCCHHHH-HHHHHHHHHHcCCCEEEEeC
Confidence 12234442 33456677778888888887
No 103
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=84.72 E-value=3.7 Score=37.99 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=26.9
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.++ |-.||||.+.+|++.|.+.|.+|.++
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lI 36 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALI 36 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 445444 66799999999999999999999886
No 104
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=84.72 E-value=2.7 Score=40.50 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHcC-CCCCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLG-NPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg-~p~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+-+.+..++.++. .+....++|+|+|. -||||++.-|+..|...|++|.+.
T Consensus 74 ~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 74 AEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred CHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 4455566666664 34456788988875 689999999999999999999774
No 105
>PRK00784 cobyric acid synthase; Provisional
Probab=84.72 E-value=1 Score=46.27 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=29.3
Q ss_pred cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 45788887 8999999999999999999998764
No 106
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=84.35 E-value=0.97 Score=39.91 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=19.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
+.|+|||| .||||+|..|+ ..|+++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 36999999 68999999887 446665
No 107
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=83.97 E-value=1.4 Score=38.06 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=26.9
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+|+|+|. .||||++..|...|+..|++|+..-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4677774 6899999999999999999998863
No 108
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.78 E-value=1.8 Score=37.60 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=28.7
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|.| -.||||.+..|...|...|++++..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 6899999 4799999999999999999999875
No 109
>PRK10037 cell division protein; Provisional
Probab=83.71 E-value=1.5 Score=40.59 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=27.1
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|+ |-.||||++.-|+..|.+.|+||.+.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 456665 55789999999999999999999874
No 110
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=83.69 E-value=1.5 Score=38.68 Aligned_cols=32 Identities=38% Similarity=0.405 Sum_probs=27.3
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+|+|+|. .||||.+..|...|...|.++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4788886 7999999999999999888877653
No 111
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=83.45 E-value=1.5 Score=40.13 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=27.1
Q ss_pred EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.|-|||| .|||+++..|.+.|++.|++++.|
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~ 37 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY 37 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4556665 799999999999999999999987
No 112
>PHA02518 ParA-like protein; Provisional
Probab=83.45 E-value=1.2 Score=39.48 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=25.9
Q ss_pred EEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|+|+ |-.||||++..|+..|...|++|.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 44544 66789999999999999999999764
No 113
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=83.38 E-value=3.5 Score=39.89 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=30.9
Q ss_pred CCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..|+|.| .|-.|||-++.+|+..|++.|++++..+
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 5688888 4889999999999999999999998753
No 114
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=83.10 E-value=1.6 Score=40.87 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.4
Q ss_pred EEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.|+|. |-.||||+|.-|+..|...|++|.+.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45555 46799999999999999999999875
No 115
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=82.86 E-value=1.6 Score=39.49 Aligned_cols=31 Identities=42% Similarity=0.654 Sum_probs=26.1
Q ss_pred EEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 97 I~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
|-|||| .|||+++..|.+.|++.|++|+.|-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 345554 7999999999999999999998863
No 116
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=82.60 E-value=1.8 Score=39.94 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=26.8
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|+ |-.||||++..|+..|...|++|.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 466666 45689999999999999999999773
No 117
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=82.54 E-value=3.6 Score=40.31 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=31.4
Q ss_pred CCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 92 SKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 92 ~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
...|||.| .|-.|||-++.+|+..|++.|+++++.+
T Consensus 54 ~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 54 LGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred CCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 35688887 6889999999999999999999998753
No 118
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=82.41 E-value=1.3 Score=41.37 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=25.4
Q ss_pred EEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 97 VHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 97 I~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|+|+ |-.||||++.-|+..|...|+||.+.
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4454 56789999999999999999999764
No 119
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=82.40 E-value=1.6 Score=37.56 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=26.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 97 I~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..-.|-.||||++..|+..|.+.|++|.+.
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344577899999999999999999999874
No 120
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.37 E-value=1.8 Score=42.09 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=28.8
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+..+|-+.|.| |||||.+=|++.|.+.|++|.+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 46678888877 6999999999999999999976
No 121
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=82.15 E-value=1.3 Score=41.29 Aligned_cols=31 Identities=32% Similarity=0.200 Sum_probs=26.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
-++++.|-.||||+++-|+..|...|.+|-.
T Consensus 5 ai~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 5 AIVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 3556667789999999999999999999865
No 122
>PRK13236 nitrogenase reductase; Reviewed
Probab=81.94 E-value=2.2 Score=40.75 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=31.5
Q ss_pred CCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
.++++|.|.| -.|||||+.-|+..|.+.|+||.++ .-|+
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 4567777754 5789999999999999999999887 4443
No 123
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=81.86 E-value=2.4 Score=38.85 Aligned_cols=48 Identities=31% Similarity=0.347 Sum_probs=32.8
Q ss_pred CCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEE------ecCCcccccceeeeeC
Q 018577 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGC------YTSPHIKTIRERMNVG 141 (353)
Q Consensus 92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~------~tSp~l~~~~eri~in 141 (353)
.+..+|+|+| ..||||++..|...|... ++.+ |-+..-..+.||...|
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n 61 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKIN 61 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcC
Confidence 4557899999 489999999999999855 3433 3344444454554444
No 124
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=81.81 E-value=1.3 Score=41.22 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=24.2
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|-.||||||.-|+..|.+.|+||.+.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 467899999999999999999999764
No 125
>CHL00175 minD septum-site determining protein; Validated
Probab=81.65 E-value=1.9 Score=40.52 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=30.0
Q ss_pred CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe-cCC
Q 018577 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY-TSP 129 (353)
Q Consensus 94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~-tSp 129 (353)
.++|.|++. .||||++.-|+..|.+.|++|.+. ..|
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 468888765 789999999999999999999875 444
No 126
>PRK10867 signal recognition particle protein; Provisional
Probab=81.56 E-value=11 Score=38.32 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=28.2
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHc-CCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAE-GYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~-G~~vg~~ 126 (353)
..+|.++|- .|||||+.-|+..|... |++|.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV 135 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV 135 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence 467888885 68999999999999988 9999874
No 127
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=81.47 E-value=2.1 Score=40.68 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=28.8
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
++|+|+| -.||||.+.-|...|++.| +|++.-
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 6899999 7899999999999999999 888763
No 128
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=81.18 E-value=3.7 Score=39.00 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCC----CCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577 81 NRLMDRLGNPHS----KFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 81 ~~~l~~lg~p~~----~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~ 122 (353)
.+...++|.+.. .+-+.|=+|| |||+++..++..+...|+.
T Consensus 44 ~~~r~~~g~~~~~~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 44 ERLRQRLGLASAAPTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred HHHHHHhCCCcCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 344455665432 2234567788 9999999999999988764
No 129
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=80.89 E-value=6.7 Score=40.24 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.7
Q ss_pred CCcEEEEcCC---CCchHHHHHHHHHHHHc
Q 018577 93 KFKTVHIAGT---KGKGSTAAFLSSILRAE 119 (353)
Q Consensus 93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~ 119 (353)
+.+.|-|||| .|||+++..|.+.|+..
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 4677999998 69999999999999974
No 130
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=80.86 E-value=2.3 Score=43.02 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=31.8
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
+++|+|+| -.||||.+.-|-..|+..||+|++.-..|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 36899999 68999999999999999999999865433
No 131
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=80.27 E-value=1.7 Score=40.95 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=26.7
Q ss_pred cEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|+ |-.|||||+.-|+..|...|+||.+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 445555 46789999999999999999999775
No 132
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=80.12 E-value=4.5 Score=39.35 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=32.2
Q ss_pred CCCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 91 HSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 91 ~~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
....|||.| +|-.|||-++.+|...|++.|+++++.+
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS 72 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS 72 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc
Confidence 346788887 6889999999999999999999999854
No 133
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=80.04 E-value=3 Score=40.68 Aligned_cols=35 Identities=31% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++.++|.|+| .-||||++..|+..|...|++|++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4678888886 5799999999999999999999876
No 134
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=79.35 E-value=1.8 Score=40.56 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.9
Q ss_pred cEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|+ |-.|||||+.-|+..|...|+||.+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456666 45679999999999999999999775
No 135
>PLN02796 D-glycerate 3-kinase
Probab=79.32 E-value=7.1 Score=38.35 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.8
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.-+|+|+|. .||||++..|..+|...|++++..
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I 134 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASL 134 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE
Confidence 457999997 689999999999999888777653
No 136
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=79.27 E-value=1.9 Score=40.27 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=26.7
Q ss_pred cEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|+ |-.|||||+.-|++.|...|+||.+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 455555 56789999999999999999999764
No 137
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=78.98 E-value=4.8 Score=38.53 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=26.2
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHHHc--CCCeEEe
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILRAE--GYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~~~--G~~vg~~ 126 (353)
+...+|+|+|.| ||||++.+|..+|... +-++.++
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi 98 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELI 98 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEE
Confidence 345689999985 7999999999999853 2245443
No 138
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.84 E-value=4.5 Score=40.65 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=28.6
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.++|++.|- .|||||...|+.-|...|+++++.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 357777775 5899999999999999999999754
No 139
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=78.76 E-value=3.3 Score=34.94 Aligned_cols=54 Identities=24% Similarity=0.237 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCcccc
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKT 133 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~ 133 (353)
+.+.+.++.+.++..-..-.+|.+.|. .||||.+..+...|. .. +..+||...-
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg---~~-~~v~SPTf~l 59 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG---IQ-GNVTSPTFTL 59 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC---CC-CcccCCCeee
Confidence 567788888888765555679999997 679888888877764 32 2357887443
No 140
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=78.26 E-value=2.1 Score=41.05 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.1
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|--|||||+..|++.|.+.|+||.+.
T Consensus 8 KGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456899999999999999999999764
No 141
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=78.20 E-value=2.1 Score=40.84 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.9
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|-.|||||+.-|+..|...|+||.+.
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999999999999764
No 142
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=77.89 E-value=2.1 Score=43.86 Aligned_cols=31 Identities=39% Similarity=0.575 Sum_probs=26.8
Q ss_pred EcCC---CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 99 IAGT---KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 99 VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
|||| .|||.++..|..+|++.|++|+.|-.-
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 5554 899999999999999999999987553
No 143
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=77.62 E-value=23 Score=35.87 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=26.8
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHH-HcCCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~-~~G~~vg~~ 126 (353)
..+|.++|. .|||||+.-|+..|. ..|++|.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 347777775 689999999999986 579999874
No 144
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=77.56 E-value=4.8 Score=43.46 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHHHHHcC--CCCCCCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEe
Q 018577 78 GRMNRLMDRLG--NPHSKFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 78 ~r~~~~l~~lg--~p~~~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|.++.+-..|. ......++|.||++. ||||++.-|+..|...|+||.+.
T Consensus 513 Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 513 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 34444444332 234467899999975 99999999999999999999764
No 145
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=77.46 E-value=4 Score=35.52 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=28.2
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+|.|.|. .||||.+..|+..|...|+++.....|
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5788885 799999999999999999998654433
No 146
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=77.43 E-value=2.2 Score=39.93 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=24.5
Q ss_pred EEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|.|+ |-.|||||+.=|+-.|...|++||+.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45554 66899999999999999999999984
No 147
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=77.31 E-value=3.7 Score=36.29 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..++|+|+|- .||||...-|...|...|++||..-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 4679999994 7899999999999999999998853
No 148
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=77.19 E-value=2.3 Score=36.81 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCCCCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 90 PHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 90 p~~~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
|....|-|-|||| .||||++..|+..+
T Consensus 3 ~~r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 3 PERERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hhhcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3445677999999 68999999999655
No 149
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=76.92 E-value=8.7 Score=36.96 Aligned_cols=36 Identities=39% Similarity=0.422 Sum_probs=29.8
Q ss_pred CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
+.++|++-|| -||=||+.+|...|++.|+++++..+
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaT 149 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVAT 149 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEec
Confidence 5689999998 79999999999999999999987644
No 150
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=76.60 E-value=2.8 Score=36.16 Aligned_cols=27 Identities=37% Similarity=0.493 Sum_probs=24.1
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|--||||++.-|+..|.+.|++|.+.
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 466899999999999999999999773
No 151
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=76.53 E-value=2.8 Score=38.17 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=32.0
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
...|.|-|- .||||.+.+|...|++.|++|.+..-|+
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~ 41 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG 41 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 357888885 7999999999999999999998776674
No 152
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=76.50 E-value=2.9 Score=34.98 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=24.8
Q ss_pred EEcCC-CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 98 HIAGT-KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 98 ~VtGT-nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|||+ .|||+++.-+...|++.|++++.|
T Consensus 4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~ 33 (134)
T cd03109 4 FGTGTDIGKTVATAILARALKEKGYRVAPL 33 (134)
T ss_pred EeCCCCcCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34444 799999999999999999999885
No 153
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=75.11 E-value=27 Score=33.94 Aligned_cols=110 Identities=20% Similarity=0.250 Sum_probs=58.2
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe-cCCc--ccccce--------eeeeCCCCcccCH-HHHHHHHHHHH
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY-TSPH--IKTIRE--------RMNVGRLNRPVSA-KALNCLFHKIK 160 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~--l~~~~e--------ri~in~~G~~is~-~~~~~~~~~i~ 160 (353)
++|-++| --||||+++-++--|.+.|.+|-+. |-|- +.+.-. +|.-|-.+..++. ..+.+.+.+++
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHH
Confidence 4555554 6899999999999999999887665 3331 111111 1111111233332 33344555555
Q ss_pred HHHHHHHhhcC----------CccChhHHHHHHHHHHH-hhCCCCEEEEeecCCC
Q 018577 161 GVLDEAIRLEN----------GCITHFEVLTAMAFALF-AQNHVDIAVIEAGLGG 204 (353)
Q Consensus 161 ~~~~~~~~~~~----------~~~t~FE~~t~~a~~~f-~~~~~d~~VlEvG~gg 204 (353)
........... ..|..=|+....++.-+ ...+.|++|+-+-.-|
T Consensus 83 ~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG 137 (322)
T COG0003 83 DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTG 137 (322)
T ss_pred HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChH
Confidence 44333221111 13344444444444433 4567899999984433
No 154
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=75.04 E-value=3 Score=36.61 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=27.5
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.|.|.|. .||||.+.+|+.-|...|+++-.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~ 36 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF 36 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57999996 79999999999999999988754
No 155
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=74.97 E-value=3 Score=39.58 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.2
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+|.|+ |--|||||+..|+..|...|++||++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL 82 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEE
Confidence 456665 67899999999999999999999986
No 156
>PRK11670 antiporter inner membrane protein; Provisional
Probab=74.77 E-value=3 Score=41.32 Aligned_cols=33 Identities=39% Similarity=0.471 Sum_probs=29.1
Q ss_pred CcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++|+|+ |-.|||||+.-|+..|.+.|+||++.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4788887 45789999999999999999999885
No 157
>PLN02924 thymidylate kinase
Probab=74.71 E-value=5.9 Score=36.21 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 90 PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 90 p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|+...+.|.|.|- .||||.+.+|+.-|...|+++-.+
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 4455678999995 899999999999999999998543
No 158
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=74.41 E-value=3.9 Score=37.31 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=23.6
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHH--cCCCeEE
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRA--EGYSVGC 125 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~--~G~~vg~ 125 (353)
+|+|+|. .||||++..|...|.. .+.++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 4889997 5899999999999985 4445544
No 159
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=73.72 E-value=3.4 Score=39.46 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCcEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 93 KFKTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 93 ~~~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
+.++|+|. |--|||||+.-|+..|.+.|+||.+. .-|+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 34677665 45779999999999999999999886 4443
No 160
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=73.65 E-value=3.3 Score=38.72 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.1
Q ss_pred cEEEEc--CCCCchHHHHHHHHHHHH-cCCCeEEe-cCCc
Q 018577 95 KTVHIA--GTKGKGSTAAFLSSILRA-EGYSVGCY-TSPH 130 (353)
Q Consensus 95 ~vI~Vt--GTnGKtSTt~ml~~IL~~-~G~~vg~~-tSp~ 130 (353)
++|+|+ |-.|||||+.-|+..|.+ .|+||.+. .-|+
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq 42 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPK 42 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcC
Confidence 466666 457799999999999997 69999875 3343
No 161
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=73.41 E-value=3 Score=33.48 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=20.7
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeE
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg 124 (353)
+|.|+|. .||||++..|+.-| |+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i 28 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVI 28 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEE
Confidence 5778886 69999999999977 66653
No 162
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=73.25 E-value=5.5 Score=35.57 Aligned_cols=27 Identities=33% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 98 HIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 98 ~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.+| .|||++...+...+...|+++..
T Consensus 25 G~aG-tGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 25 GPAG-TGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp ESTT-STHHHHHHHHHHHHHHTT--EEE
T ss_pred ECCC-CCHHHHHHHHHHHHHhCCCeEEE
Confidence 4444 47999999999999999988854
No 163
>PRK07933 thymidylate kinase; Validated
Probab=73.04 E-value=5.7 Score=36.04 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=29.1
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+|+|-|. .||||.+.+|..-|...|++|.+..-|
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5778885 799999999999999999999875545
No 164
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=72.69 E-value=4.4 Score=34.71 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=22.9
Q ss_pred CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 103 KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 103 nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.|||+++.-|+..|++.|++|+++
T Consensus 9 ~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 9 VGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEE
Confidence 799999999999999999999986
No 165
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=72.30 E-value=9.2 Score=35.74 Aligned_cols=36 Identities=39% Similarity=0.571 Sum_probs=29.0
Q ss_pred cEEEEcC----CCCchHHHHHHHHHHHHcCCCeEE-ecCCc
Q 018577 95 KTVHIAG----TKGKGSTAAFLSSILRAEGYSVGC-YTSPH 130 (353)
Q Consensus 95 ~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~-~tSp~ 130 (353)
|.|-||| +=|||-|++-|..+|+..|++|-. --.|+
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 41 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPY 41 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 4577888 579999999999999999999854 23444
No 166
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=72.05 E-value=5 Score=32.84 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 101 GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 101 GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|..||||++..++..|.+.|+++.++
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~i 33 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAI 33 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 56899999999999999999998763
No 167
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=72.03 E-value=11 Score=35.40 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=27.2
Q ss_pred hCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhH
Q 018577 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHT 230 (353)
Q Consensus 190 ~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl 230 (353)
+...|++++-+|.|=-.|....+...+ .+.++|+-..+-.
T Consensus 110 ~~~~D~iliD~~aGl~~~~~~~~~~sd-~~viVt~pe~~si 149 (262)
T COG0455 110 EELYDYILIDTGAGLSRDTLSFILSSD-ELVIVTTPEPTSI 149 (262)
T ss_pred HhcCCEEEEeCCCCccHHHHHHHHhcC-cEEEEeCCCcchH
Confidence 344599999999887666666544332 4677787776543
No 168
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=71.73 E-value=24 Score=32.78 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 101 GTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 101 GTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
|--||||++.-++..+.+.|++|-+..
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd 35 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVS 35 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEe
Confidence 457999999999999999999997753
No 169
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=71.72 E-value=16 Score=32.69 Aligned_cols=66 Identities=21% Similarity=0.175 Sum_probs=43.5
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLD 164 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~ 164 (353)
+..+|=.||= .||||.+..|+..|.+.|+.|-+.-. -+-|...| -+...|.++=.+.+.++...++
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG-----DnvR~gL~-~dLgFs~edR~eniRRvaevAk 89 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG-----DNVRHGLN-RDLGFSREDRIENIRRVAEVAK 89 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC-----hhHhhccc-CCCCCChHHHHHHHHHHHHHHH
Confidence 3468888884 78999999999999999999876322 22222222 2455676665555555544443
No 170
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=71.70 E-value=2 Score=39.97 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=25.3
Q ss_pred cEEEE--cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHI--AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~V--tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+| -|-.|||||+.-|++.|.+.| +|.+.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 34444 466899999999999999999 98764
No 171
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.55 E-value=39 Score=34.72 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=54.2
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhc
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLE 170 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~ 170 (353)
+..+|.+.|-| ||+|.-+-|+--|.+.+++|-... .+.++. .++++++-+++.+....
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAA-------CDTFRs-------------GAvEQLrtHv~rl~~l~ 436 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAA-------CDTFRS-------------GAVEQLRTHVERLSALH 436 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEe-------ccchhh-------------hHHHHHHHHHHHHHHhc
Confidence 55677777776 699999999999999999985421 111111 25677777777765433
Q ss_pred CCccChhHH--------HHHHHHHHHhhCCCCEEEEee
Q 018577 171 NGCITHFEV--------LTAMAFALFAQNHVDIAVIEA 200 (353)
Q Consensus 171 ~~~~t~FE~--------~t~~a~~~f~~~~~d~~VlEv 200 (353)
......||- +.--|..+...++.|++.+.+
T Consensus 437 ~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDT 474 (587)
T KOG0781|consen 437 GTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDT 474 (587)
T ss_pred cchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEec
Confidence 333333432 112233445667788887777
No 172
>PRK00889 adenylylsulfate kinase; Provisional
Probab=71.39 E-value=8 Score=33.43 Aligned_cols=33 Identities=36% Similarity=0.464 Sum_probs=27.6
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+..+|.++|. .||||++..|+..|...|.++.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~ 37 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEV 37 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3468999995 78999999999999988877654
No 173
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=71.02 E-value=10 Score=38.44 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=28.8
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.-+|+|+|- .||||.+..|..+|+..|++++..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI 246 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL 246 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 3468999996 689999999999999888888763
No 174
>PRK11519 tyrosine kinase; Provisional
Probab=70.82 E-value=9.2 Score=41.28 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHHcC--CCCCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 78 GRMNRLMDRLG--NPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 78 ~r~~~~l~~lg--~p~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|.++.+-..|. .+....++|.||++ -||||++.-|+..|...|.+|.+.
T Consensus 508 Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 508 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred HHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 44444444432 24456689999995 699999999999999999999774
No 175
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=70.48 E-value=32 Score=34.49 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=28.1
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHH--HcCCCeEEecC
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILR--AEGYSVGCYTS 128 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~--~~G~~vg~~tS 128 (353)
-++|..-|. .|||||.+=|++.+. .--++||+.|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt 241 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT 241 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEe
Confidence 577888775 689999999999988 44568888765
No 176
>PRK12377 putative replication protein; Provisional
Probab=70.18 E-value=5.3 Score=37.33 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=26.0
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..+.+.|. .|||..+..|+.-|...|+.|...+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 45666664 5999999999999999998886543
No 177
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=70.16 E-value=6.3 Score=33.09 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=25.0
Q ss_pred cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
|+|+|.| .-|||+++..++..|.+.|.+|.+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vll 34 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLL 34 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 3555555 679999999999999999999866
No 178
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=70.07 E-value=5.3 Score=36.91 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=25.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHH-HcCCCeEEe
Q 018577 96 TVHIAGTKGKGSTAAFLSSILR-AEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~-~~G~~vg~~ 126 (353)
+...-|-.|||||+..|+..|. ..|+||.+.
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence 4455678899999999999999 666898663
No 179
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=69.91 E-value=10 Score=34.49 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=26.3
Q ss_pred CCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCC
Q 018577 91 HSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 91 ~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~ 122 (353)
..+..+|+|+|-| ||||.+..|...|...+-.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 3456799999974 6999999999999986654
No 180
>PRK10818 cell division inhibitor MinD; Provisional
Probab=69.46 E-value=5.4 Score=37.13 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=26.7
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|+ |--||||++..|+..|.+.|++|.+.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv 37 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 566665 45789999999999999999999763
No 181
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=68.79 E-value=11 Score=38.53 Aligned_cols=36 Identities=39% Similarity=0.560 Sum_probs=29.9
Q ss_pred cEEEEcC----CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 95 KTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 95 ~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
+.|-||| +=|||-|++-|+.+|++.|++|-.. --|+
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 5688888 6899999999999999999998653 3444
No 182
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=68.61 E-value=77 Score=31.03 Aligned_cols=145 Identities=22% Similarity=0.355 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHcC----C--CC-CCCcEEEEcCCCC----------chHHHHHHHHHH----------HHcCCCe-----
Q 018577 76 DLGRMNRLMDRLG----N--PH-SKFKTVHIAGTKG----------KGSTAAFLSSIL----------RAEGYSV----- 123 (353)
Q Consensus 76 ~l~r~~~~l~~lg----~--p~-~~~~vI~VtGTnG----------KtSTt~ml~~IL----------~~~G~~v----- 123 (353)
+|.+++.+..+|. . |. .+..++..+|-|| +..|..|+..++ +..|.++
T Consensus 22 sLG~Le~la~~la~iqg~~~p~~~~~~~~vfaaDHGv~~~gvS~~p~~vT~~~~~n~~~G~a~i~~~a~~~g~~l~VVD~ 101 (335)
T PRK00105 22 SLGRLEELAVQLAGIQGTEPPRVERPAVVVFAGDHGVAEEGVSAYPQEVTAQMVANFLAGGAAINVLARQAGADLEVVDL 101 (335)
T ss_pred chHHHHHHHHHHHHhhCCCCCCCCCCEEEEEeCCCCcccCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHcCCCeEEEeC
Confidence 5778877777663 2 22 3567889999887 788888887666 3455443
Q ss_pred EEec---CCcccccceeeeeC--C--CCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEE
Q 018577 124 GCYT---SPHIKTIRERMNVG--R--LNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196 (353)
Q Consensus 124 g~~t---Sp~l~~~~eri~in--~--~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~ 196 (353)
|+.. .|++.+. ++.-+ + .+..+++++..++++.=....++ ..+.++|++
T Consensus 102 G~~~~~~~p~~~~~--ki~~gt~ni~~~pAMt~~e~~~ai~~G~~l~~~----------------------~~~~g~dll 157 (335)
T PRK00105 102 GVDAPEPLPGLINM--RVARGTGNIAKEPAMTREEAEAALAAGAALADE----------------------AADAGTDLL 157 (335)
T ss_pred CCCCCCCCCchhhc--cCcCCCCCCccCCCCCHHHHHHHHHHHHHHHHH----------------------HHHcCCCEE
Confidence 3222 2333221 12111 0 13445555555555432222221 235667766
Q ss_pred EE-eecCCCcccccccccccCCcEEEEccCChhhHhhhC-CCHHHHHHHHHhcccCC
Q 018577 197 VI-EAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-GSLETIAMAKSGIIKYG 251 (353)
Q Consensus 197 Vl-EvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG-~tle~ia~~Ka~Iik~g 251 (353)
++ |+|.|+.--+.-+ ++++|++..+..---| .--++-.+.|..+++..
T Consensus 158 ~~GEmGiGnTTtAaAv-------l~aL~g~~~~~~vg~Gsg~~~~~~~~K~~vV~~a 207 (335)
T PRK00105 158 GVGEMGIGNTTPAAAL-------VAALTGGDPEEVVGRGTGIDDAGLARKIAVVRRA 207 (335)
T ss_pred EEeCcCcchhHHHHHH-------HHHHhCcCHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 54 8888875322222 3556676665544333 12344555666666653
No 183
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=68.50 E-value=13 Score=38.58 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=30.1
Q ss_pred cEEEEcC----CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 95 KTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 95 ~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
|.|-||| +=|||.|++-|..+|++.||+|... ..|+
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPY 42 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 6788998 5799999999999999999998652 3444
No 184
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=67.81 E-value=4.2 Score=36.05 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=19.2
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeE
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg 124 (353)
+|+|||. .||||++.+++. .|+++.
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 6999997 899999888765 677663
No 185
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=67.70 E-value=11 Score=32.99 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=28.4
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
...+|.++| ..||||++..|...|...|+.+..+
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l 52 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVL 52 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 346899999 7899999999999999888766554
No 186
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=67.56 E-value=5.5 Score=37.54 Aligned_cols=32 Identities=38% Similarity=0.622 Sum_probs=26.2
Q ss_pred cEEEEcC----CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|.|-||| +=|||-|++-|..+|+..|++|...
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~ 37 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMI 37 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeee
Confidence 6788888 5799999999999999999998653
No 187
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=67.52 E-value=8.3 Score=36.58 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHc-C-CCeEEec
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE-G-YSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~-G-~~vg~~t 127 (353)
+..+|.+.|- .|||||+..|+.-+... | ++|++.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 3458888885 68999999999988765 5 8998864
No 188
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=66.80 E-value=6.5 Score=37.85 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=58.9
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEecC-Cc--cccc------ceeeeeC---C-CCcccCH-HHHHHHHHHHHHHH--
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCYTS-PH--IKTI------RERMNVG---R-LNRPVSA-KALNCLFHKIKGVL-- 163 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~tS-p~--l~~~------~eri~in---~-~G~~is~-~~~~~~~~~i~~~~-- 163 (353)
-|-.||||+++.++--+...|++|.+.++ |. +.+. ++-..+. | ....++. ..+.+.+.++.+..
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~~~~~~~~ 88 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEEVQKDLSS 88 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHHHHHGCST
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHHHHhhhcc
Confidence 35799999999999999999999987643 21 1000 0111121 0 0122333 33444455544321
Q ss_pred -------HHHHhhcCC-ccChhHHHHHHHHHHHh-hCCCCEEEEeecCCC
Q 018577 164 -------DEAIRLENG-CITHFEVLTAMAFALFA-QNHVDIAVIEAGLGG 204 (353)
Q Consensus 164 -------~~~~~~~~~-~~t~FE~~t~~a~~~f~-~~~~d~~VlEvG~gg 204 (353)
+........ .|..-|+..+..+.-.. ..+.|++|+-+...|
T Consensus 89 ~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg 138 (305)
T PF02374_consen 89 LLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTG 138 (305)
T ss_dssp CHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSH
T ss_pred chhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcH
Confidence 111122223 37777877777766554 688999999996554
No 189
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=66.76 E-value=7.8 Score=30.87 Aligned_cols=28 Identities=32% Similarity=0.242 Sum_probs=24.3
Q ss_pred EEcCCCCchHHHHHHHHHHHHc-CCCeEE
Q 018577 98 HIAGTKGKGSTAAFLSSILRAE-GYSVGC 125 (353)
Q Consensus 98 ~VtGTnGKtSTt~ml~~IL~~~-G~~vg~ 125 (353)
+--|.-||||++.-|+..|.+. |++|.+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l 34 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLL 34 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEE
Confidence 3446679999999999999998 999987
No 190
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=66.49 E-value=4 Score=36.88 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCCcEEEEcCCCCchHHH--HHHHHHHHHcCCCe
Q 018577 92 SKFKTVHIAGTKGKGSTA--AFLSSILRAEGYSV 123 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt--~ml~~IL~~~G~~v 123 (353)
.+.|+|+||||.|-|||+ .....|++....+.
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 467999999998877665 44567777655443
No 191
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=66.31 E-value=12 Score=40.60 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=30.6
Q ss_pred CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
....++|.||++ -||||++.-|+..|...|++|.+.
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 345678998876 689999999999999999999764
No 192
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=66.30 E-value=27 Score=30.31 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=28.3
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
.+|-+||. .||||.+..|..-|.+.|+++.+.-+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 57888986 68999999999999999999977533
No 193
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=65.61 E-value=9.1 Score=40.44 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=32.3
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
..++|+|.| -.||||...-|-..|++.|++|+..-..
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 368999999 5799999999999999999999987543
No 194
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=65.36 E-value=11 Score=32.56 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=26.2
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
++.++|- .||||++..++..|.+.|.++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4666664 6899999999999999999987643
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=65.19 E-value=6.7 Score=38.23 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=24.6
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
..+.+.|. .|||..+..|+.-+...|++|..++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 33444442 49999999999988888988865443
No 196
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.35 E-value=11 Score=37.63 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
+.++|.++| -.|||||+.-|+..+...|++|++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 457888888 579999999999999888999988654
No 197
>PRK10646 ADP-binding protein; Provisional
Probab=64.16 E-value=12 Score=32.39 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCccc
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIK 132 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~ 132 (353)
.+.+.++++.+.|+.--+.-.+|...|. .||||.++-|...| |.+ ...+||-..
T Consensus 9 ~s~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~L---g~~-~~V~SPTFt 64 (153)
T PRK10646 9 PDEQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQAL---GHQ-GNVKSPTYT 64 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCC-CCCCCCCEe
Confidence 4678888888888865555679999997 78998887777766 543 235888643
No 198
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=63.62 E-value=11 Score=27.55 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=22.5
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|.|+|. .||||.+..|+..| .|.++...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEE
Confidence 3677785 68999999999999 56666654
No 199
>PRK05380 pyrG CTP synthetase; Validated
Probab=63.48 E-value=15 Score=38.12 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=30.8
Q ss_pred CcEEEEcC----CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 94 FKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 94 ~~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
.|.|-||| +=|||-|++-|..+|++.|++|... -.|+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpY 43 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 43 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 47789999 6899999999999999999998652 3444
No 200
>PRK03846 adenylylsulfate kinase; Provisional
Probab=63.47 E-value=14 Score=32.78 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=28.3
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+|.|+| -.||||.+..|+..|...|+.+.++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 456899999 6899999999999998888776554
No 201
>PRK08233 hypothetical protein; Provisional
Probab=63.22 E-value=6.4 Score=33.91 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.6
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
..+|+|+|. .||||.+..|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999997 789999999998875
No 202
>PRK00698 tmk thymidylate kinase; Validated
Probab=62.87 E-value=14 Score=32.54 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.6
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
++|.|.|- .||||.+..|+.-|...|+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 57999995 89999999999999998876644
No 203
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.40 E-value=17 Score=36.64 Aligned_cols=35 Identities=26% Similarity=0.135 Sum_probs=27.5
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHH--HcCCCeEEecC
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILR--AEGYSVGCYTS 128 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~--~~G~~vg~~tS 128 (353)
.++|.+.|- .|||||+..|+..+. ..|++|++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 357888885 589999999998886 56789988643
No 204
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=62.36 E-value=14 Score=36.37 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=26.1
Q ss_pred CCCCcEEEEcCCC-CchHHHHHHHHHHHHcCCCe
Q 018577 91 HSKFKTVHIAGTK-GKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 91 ~~~~~vI~VtGTn-GKtSTt~ml~~IL~~~G~~v 123 (353)
+...+++.|-+|+ ||||.|.+|-.-.-..|++.
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 3445677777787 99999999988887779876
No 205
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=62.29 E-value=83 Score=26.86 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=32.1
Q ss_pred hCCCCEEEEeecCCCcc-----cccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577 190 QNHVDIAVIEAGLGGAR-----DATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252 (353)
Q Consensus 190 ~~~~d~~VlEvG~gg~~-----D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~ 252 (353)
..++|++++=....... ...+.+. +|.++|||-++.+. +-+++.++|.-+-..|+
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f~--~pvIGVITK~Dl~~------~~~~i~~a~~~L~~aG~ 120 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMFN--KPVIGVITKIDLPS------DDANIERAKKWLKNAGV 120 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcccC--CCEEEEEECccCcc------chhhHHHHHHHHHHcCC
Confidence 45788888877433221 1123332 47899999998762 44555555555544454
No 206
>PRK13973 thymidylate kinase; Provisional
Probab=62.19 E-value=8.3 Score=34.80 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=29.3
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+.|.|-|. .||||.+.+|+.-|...|+++-...=|
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p 40 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREP 40 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 57888886 799999999999999999998654344
No 207
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=62.00 E-value=9.7 Score=33.64 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=22.0
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|+|+|- .||||++..|..+| .+.++.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~ 31 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVII 31 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEE
Confidence 4788885 68999999999999 33455443
No 208
>PLN02327 CTP synthase
Probab=61.92 E-value=17 Score=37.93 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=27.9
Q ss_pred cEEEEcC----CCCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAG----TKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
|.|-||| +=|||-|++-|..+|++.||+|..
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~ 36 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTS 36 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceee
Confidence 6788998 579999999999999999999855
No 209
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=61.35 E-value=50 Score=28.86 Aligned_cols=64 Identities=23% Similarity=0.190 Sum_probs=41.9
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~ 162 (353)
+-.+|=|||- .||+|.+-.|.+.|-+.|.-+.. +-.-|-|...|. ..-++.++=.+.+.+|.+.
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~-----LDGDNvRhGLN~-DL~F~a~dR~ENIRRigeV 95 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYI-----LDGDNVRHGLNK-DLGFKAEDRNENIRRIGEV 95 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEE-----ecCccccccccc-ccCcchhhhhhhHHHHHHH
Confidence 4579999994 78999999999999999965533 333444555541 3334555545555555443
No 210
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.96 E-value=22 Score=36.53 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=25.8
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHHH-HcC-CCeEEe
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSILR-AEG-YSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL~-~~G-~~vg~~ 126 (353)
..+|++.|-| |||||+..|+..+. ..| .+|++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4688888875 79999999999884 455 478764
No 211
>PRK13768 GTPase; Provisional
Probab=60.57 E-value=13 Score=34.69 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=26.2
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+|.|+| ..||||++.-++..|...|++|.+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 3556665 4799999999999999999998774
No 212
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=60.44 E-value=14 Score=38.34 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=29.6
Q ss_pred CCcEEEEcC------CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAG------TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtG------TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.++|.||. .-|||||+.=|+..|.+.|.+|.+.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli 93 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA 93 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999 3489999999999999999998653
No 213
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=59.68 E-value=7.9 Score=35.00 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=20.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
..+|+|||. .||||++.+++. .|++|
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~v 29 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPV 29 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeE
Confidence 368999996 899999988766 46665
No 214
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=58.62 E-value=18 Score=37.25 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHcCCCCCCCcEEEEcC------CCCchHHHHHHHHHHHHcCCCeEE
Q 018577 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAG------TKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p~~~~~vI~VtG------TnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.+++-++ ++.. .+..++|.||. --|||||+.=|++.|.+.|.+|.+
T Consensus 23 Ki~~~~~~----~~~~-~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~ 75 (524)
T cd00477 23 KVDLDVLK----RLEK-RPDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIA 75 (524)
T ss_pred eecHHHHh----hhcc-CCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEE
Confidence 35666444 3322 22458899999 359999999999999999998765
No 215
>TIGR03160 cobT_DBIPRT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. Members of this family are nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, an enzyme of cobalamin biosynthesis.
Probab=58.24 E-value=1.6e+02 Score=28.87 Aligned_cols=145 Identities=21% Similarity=0.306 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHcC----C--CC-CCCcEEEEcCCCC----------chHHHHHHHHHHH----------HcCCCe-----
Q 018577 76 DLGRMNRLMDRLG----N--PH-SKFKTVHIAGTKG----------KGSTAAFLSSILR----------AEGYSV----- 123 (353)
Q Consensus 76 ~l~r~~~~l~~lg----~--p~-~~~~vI~VtGTnG----------KtSTt~ml~~IL~----------~~G~~v----- 123 (353)
+|.+++.+..+|. . |. .+..++..+|-|| +..|..|...++. ..|.++
T Consensus 21 sLG~Le~la~~la~~q~~~~p~~~~~~~~vfaaDHGv~~~gvS~~p~~vT~~~~~n~~~G~a~~~~~a~~~g~~l~VVD~ 100 (333)
T TIGR03160 21 SLGRLEELAVQLAGIQGTVPPRIDRPAVVVFAGDHGVAAEGVSAFPQEVTAQMVENFLAGGAAINVLARQAGADLRVVDV 100 (333)
T ss_pred chHHHHHHHHHHHHhhCCCCCCCCCceEEEEeCCCCcccCCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHcCCCeEEEeC
Confidence 5777777777662 2 22 3456788888665 6668888887774 344432
Q ss_pred EEecC----CcccccceeeeeC----CCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCE
Q 018577 124 GCYTS----PHIKTIRERMNVG----RLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195 (353)
Q Consensus 124 g~~tS----p~l~~~~eri~in----~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~ 195 (353)
|+... |++.+ .++.-+ ..+..++.++..++++.=....++ ..+.++|+
T Consensus 101 G~~~~~~~~p~~~~--~ki~~Gt~di~~~pAMt~~e~~~a~~~G~~~~~~----------------------~~~~g~dl 156 (333)
T TIGR03160 101 GVDHDLEEHPGLIN--RKVRRGTANIAQGPAMTREEAEAALEAGIEAADE----------------------AADSGADL 156 (333)
T ss_pred CCCCCCCCCCchhh--cCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHH----------------------HHHcCCCE
Confidence 33222 33322 222221 023445656655555432222221 23556776
Q ss_pred EE-EeecCCCcccccccccccCCcEEEEccCChhhHhhhCC-CHHHHHHHHHhcccCC
Q 018577 196 AV-IEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGG-SLETIAMAKSGIIKYG 251 (353)
Q Consensus 196 ~V-lEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~-tle~ia~~Ka~Iik~g 251 (353)
++ =|+|.|+.--+.-+ ++++|++..+..--.|. --++-.+.|..+++..
T Consensus 157 l~~GEmGiGnTTtAaAv-------l~aL~g~~~~~~vg~Gsg~~~~~~~~K~~vV~~a 207 (333)
T TIGR03160 157 LGTGEMGIGNTTPAAAL-------LAALTGLPPEEVVGRGTGLDDEGLARKVAVIRRA 207 (333)
T ss_pred EEEeCcCchhhHHHHHH-------HHHHhCcCHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 55 48888876322222 35566666665544442 2344445566666654
No 216
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.03 E-value=38 Score=32.88 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=18.9
Q ss_pred CcEEEEcCC--CCchHHH-HHHHHHHHHcCCC
Q 018577 94 FKTVHIAGT--KGKGSTA-AFLSSILRAEGYS 122 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt-~ml~~IL~~~G~~ 122 (353)
.-.|-|||- .|||||- +||..|=+..-+.
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~H 156 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKH 156 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcc
Confidence 356899984 7888775 5666665554433
No 217
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.92 E-value=60 Score=30.71 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=27.9
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
...|++.| ..||||+...|+..+...|.++++.+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46888887 46899999999999988888888754
No 218
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=57.81 E-value=7.4 Score=33.68 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.1
Q ss_pred EEcCCCCchHHHHHHHHHHHHc
Q 018577 98 HIAGTKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 98 ~VtGTnGKtSTt~ml~~IL~~~ 119 (353)
+|+|+ ||||+..+|++-|...
T Consensus 2 GVsG~-GKStvg~~lA~~lg~~ 22 (161)
T COG3265 2 GVSGS-GKSTVGSALAERLGAK 22 (161)
T ss_pred CCCcc-CHHHHHHHHHHHcCCc
Confidence 56664 9999999999988643
No 219
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=57.77 E-value=11 Score=35.00 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=24.7
Q ss_pred EEEEcC--CCCchHHHHH-HHHHHHHcCCCeEEe
Q 018577 96 TVHIAG--TKGKGSTAAF-LSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtG--TnGKtSTt~m-l~~IL~~~G~~vg~~ 126 (353)
.|+||| -.||||.+++ +..+++..||+|-..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 578886 5899999999 777777777998654
No 220
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=57.73 E-value=15 Score=40.31 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEe
Q 018577 91 HSKFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 91 ~~~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.-.++.+-|+||| |||-++..|.+.++..|++++.+
T Consensus 24 ~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~ 62 (817)
T PLN02974 24 PLSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYV 62 (817)
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 3467899999996 99999999999999999988654
No 221
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=57.01 E-value=12 Score=38.28 Aligned_cols=34 Identities=24% Similarity=0.156 Sum_probs=27.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
...++|.|+|||||++++++....+...++++..
T Consensus 62 ~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vig 95 (475)
T COG0769 62 AGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIG 95 (475)
T ss_pred cCCCEEEEcCcHHHHHHHHHHhccCcccCceEEE
Confidence 3456999999999999999999998775566543
No 222
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=56.60 E-value=10 Score=33.13 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
+|+|||. .||||++.+++. .|+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~ 26 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPV 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCE
Confidence 4899996 799999999887 47765
No 223
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=55.69 E-value=76 Score=30.42 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+..+|.|+|++ ||||....+...|... .++++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEE
Confidence 457899999986 5666655555555443 466653
No 224
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=55.38 E-value=24 Score=29.61 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHcCCCCCCCc-EEEEcCC--CCchHHHHHHHHHHHHcCCC
Q 018577 85 DRLGNPHSKFK-TVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 85 ~~lg~p~~~~~-vI~VtGT--nGKtSTt~ml~~IL~~~G~~ 122 (353)
+.+.++..+.| |+..-|. .||+-++.||+.-|-..|.+
T Consensus 43 ~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 43 GHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred HHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence 34555443333 4455554 48999999999998877754
No 225
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.81 E-value=1.1e+02 Score=31.61 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=26.2
Q ss_pred HHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+.+.+..|+ -.|-|||. .|||||-.-+-+-|.....++...
T Consensus 248 ~~~~~~~~~p~---GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 248 ARLLRLLNRPQ---GLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred HHHHHHHhCCC---eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEe
Confidence 34444444443 47999997 678877665555555555555443
No 226
>PTZ00301 uridine kinase; Provisional
Probab=54.63 E-value=14 Score=33.57 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.7
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHH
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILR 117 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~ 117 (353)
..+|+|+| ..||||.+..|..-|.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47899999 4899999998876654
No 227
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=54.37 E-value=11 Score=35.13 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.4
Q ss_pred cEEEEcCC--CCchHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSS 114 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~ 114 (353)
.+|+|||. .||||++.++..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~ 23 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILRE 23 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999997 899999998875
No 228
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=54.30 E-value=9.4 Score=32.57 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=16.5
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
|+|+|+ .||||++.-|+.. |+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~ 26 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPV 26 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EE
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeE
Confidence 789996 7899999988866 6654
No 229
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=53.99 E-value=15 Score=34.24 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.9
Q ss_pred EcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 99 IAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 99 VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
--|..|||+++..++..|...|.+|.++
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 3468899999999999999999999876
No 230
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.67 E-value=31 Score=34.47 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=25.1
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHH----cCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRA----EGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~----~G~~vg~~t 127 (353)
..+|.+.|. .|||||++-|++.|.. .|.+|++.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 346666665 5899999999998874 477888743
No 231
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.20 E-value=32 Score=37.40 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=25.9
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHHH-HcC-CCeEEec
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSILR-AEG-YSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL~-~~G-~~vg~~t 127 (353)
..+|++.|-| |||||...|+..+. ..| ++|++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 3578888875 79999999999884 556 5777644
No 232
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=52.07 E-value=20 Score=31.34 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=30.3
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCcccccceee
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERM 138 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri 138 (353)
|.|||- -||||...-+...|+..|++++=|.+|.+.....|+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~ 45 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRI 45 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceE
Confidence 678886 689999999999999889887555455444444554
No 233
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=51.92 E-value=13 Score=32.51 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=28.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHH
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKAL 152 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~ 152 (353)
+++|+| .||||+..+|.+-|.---+.---|-+| ...|.+. . |.|+++++=
T Consensus 17 vmGvsG-sGKSTigk~L~~~l~~~F~dgDd~Hp~---~NveKM~-~--GipLnD~DR 66 (191)
T KOG3354|consen 17 VMGVSG-SGKSTIGKALSEELGLKFIDGDDLHPP---ANVEKMT-Q--GIPLNDDDR 66 (191)
T ss_pred EEecCC-CChhhHHHHHHHHhCCcccccccCCCH---HHHHHHh-c--CCCCCcccc
Confidence 445555 489999999999887432222223333 2223322 2 777776553
No 234
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=51.91 E-value=2.3e+02 Score=27.44 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=92.6
Q ss_pred eeeeeCCCccchhhhcccccccccccCCCCCccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCC
Q 018577 12 TTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPH 91 (353)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~ 91 (353)
|-+--||++=+||+.+---.++=|+---.+....-.+.--+-+...+...++ ..++++++.+++-|+.||..+
T Consensus 140 T~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Giktinv-------VRdR~~ieel~~~Lk~lGA~~ 212 (354)
T KOG0025|consen 140 TLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINV-------VRDRPNIEELKKQLKSLGATE 212 (354)
T ss_pred eeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEE-------eecCccHHHHHHHHHHcCCce
Confidence 4456788888888877655444444332232223333323333333332222 235789999999999998642
Q ss_pred ------------------CCCcEEEEcCCCCchHHHHHHHHHHHHcCC----------CeEEecCCcccccceeeeeCCC
Q 018577 92 ------------------SKFKTVHIAGTKGKGSTAAFLSSILRAEGY----------SVGCYTSPHIKTIRERMNVGRL 143 (353)
Q Consensus 92 ------------------~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~----------~vg~~tSp~l~~~~eri~in~~ 143 (353)
..-+-.++-+--||+++ .|+..|..-|- .+-+-||+++... +..-
T Consensus 213 ViTeeel~~~~~~k~~~~~~~prLalNcVGGksa~--~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKd---l~~r-- 285 (354)
T KOG0025|consen 213 VITEEELRDRKMKKFKGDNPRPRLALNCVGGKSAT--EIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKD---LKLR-- 285 (354)
T ss_pred EecHHHhcchhhhhhhccCCCceEEEeccCchhHH--HHHHHHhcCceEEEecCccCCCcccccchheecc---ceee--
Confidence 12356888999999875 67788887552 1222366665321 1122
Q ss_pred Cccc--------CHHHHHHHHHHHHHHHHHH--Hh--hcCCccChhHHHHHHHHHHHhhCCCCEEEEe
Q 018577 144 NRPV--------SAKALNCLFHKIKGVLDEA--IR--LENGCITHFEVLTAMAFALFAQNHVDIAVIE 199 (353)
Q Consensus 144 G~~i--------s~~~~~~~~~~i~~~~~~~--~~--~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlE 199 (353)
|-++ ++++....+.++....+.- .. .+...+..|-..+-.++..|...+-.++|+|
T Consensus 286 GfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e 353 (354)
T KOG0025|consen 286 GFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVLE 353 (354)
T ss_pred eeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence 4333 2455555555544433321 00 1112344444333444555555556777776
No 235
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=51.88 E-value=15 Score=32.89 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=20.1
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|+|||. .||||++.++.. .|+.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~v 28 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLI 28 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 47999997 789999999874 57654
No 236
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.85 E-value=24 Score=35.67 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=26.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH-HHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL-RAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL-~~~G~~vg~~t 127 (353)
..+|.|.|- .|||||+.-|+.-+ ...|++|++.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 357888885 68999999999754 56788998754
No 237
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=51.73 E-value=11 Score=33.75 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEEcCC--CCchHHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
+|+|+|. .||||.+..|...|.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 5889984 799999999999873
No 238
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=51.55 E-value=30 Score=31.86 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=29.1
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
+.|-+|| ..||||.+.-|+.+|++.+.+|...++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 5688888 689999999999999999988865554
No 239
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=51.19 E-value=13 Score=33.96 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.8
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
..+|+|+|+ .||||.+.+|+.=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 478999998 799999999988775
No 240
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=51.19 E-value=8.1 Score=33.72 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred CCchHHHHHHHHHHHHcCCCeEE
Q 018577 103 KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 103 nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.||||.+.+|..-|...|+++..
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~ 29 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVII 29 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcccc
Confidence 59999999999999999998544
No 241
>PRK07952 DNA replication protein DnaC; Validated
Probab=50.86 E-value=18 Score=33.65 Aligned_cols=32 Identities=28% Similarity=0.251 Sum_probs=24.7
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+-+.| ..|||..+..|+.-|...|++|.+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3455666 4799999999999998889877543
No 242
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=50.31 E-value=12 Score=32.90 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.3
Q ss_pred EEEEcCC--CCchHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+|+|||+ .||||++.+++...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899997 78999999887753
No 243
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=50.15 E-value=13 Score=29.58 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=15.9
Q ss_pred EEEcCC--CCchHHHHHHHHHH
Q 018577 97 VHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL 116 (353)
|.|+|. .||||++..|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 455554 59999999999986
No 244
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=49.60 E-value=13 Score=37.30 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCC--chHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHH
Q 018577 93 KFKTVHIAGTKG--KGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN 153 (353)
Q Consensus 93 ~~~vI~VtGTnG--KtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~ 153 (353)
+-.+|-++|.|| |||.+.++..+.+.. .-+|..| |.|+|++.+.
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~Pq---------------sG~I~ld--g~pV~~e~le 393 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQ---------------SGEILLD--GKPVSAEQLE 393 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCC---------------CCceeEC--CccCCCCCHH
Confidence 456789999985 777776665544421 1246688 9999875543
No 245
>PRK05480 uridine/cytidine kinase; Provisional
Probab=49.48 E-value=18 Score=32.22 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+..+|+|+|- .||||.+..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999996 69999999999998
No 246
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=49.23 E-value=26 Score=36.50 Aligned_cols=46 Identities=30% Similarity=0.289 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHcCCCCCCCcEEEEcC------CCCchHHHHHHHHHHHHcCCCeE
Q 018577 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAG------TKGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p~~~~~vI~VtG------TnGKtSTt~ml~~IL~~~G~~vg 124 (353)
+.+|+- ++++.. .+..++|.||. --|||||+.=|++.|.+.|.++.
T Consensus 39 Ki~~~~----~~~~~~-~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i 90 (578)
T PRK13506 39 KVSLSV----LKRLAD-KPKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (578)
T ss_pred ecCHHH----HHhhcc-CCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence 355554 444432 23468999999 35899999999999999999863
No 247
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=48.47 E-value=12 Score=35.50 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.7
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGY 121 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~ 121 (353)
+|+|+|. .||||.+.+|..+|...|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~ 28 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV 28 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence 4788886 5899999999999987653
No 248
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=48.26 E-value=31 Score=32.01 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=29.8
Q ss_pred hHHHHHHHHHcCCCC-CCCcEEEEcC--CCCchHHHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPH-SKFKTVHIAG--TKGKGSTAAFLSSI 115 (353)
Q Consensus 77 l~r~~~~l~~lg~p~-~~~~vI~VtG--TnGKtSTt~ml~~I 115 (353)
++++.++...+|..+ -.+|.|+|.| +.||||+-..|...
T Consensus 8 ~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 8 VNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 456666665677543 4678899999 68999999988875
No 249
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=48.04 E-value=69 Score=28.16 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=29.8
Q ss_pred HHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccc
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKT 133 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~ 133 (353)
+++++..+....++..|.+ +||..+.++++..|-+||+.++.+..+
T Consensus 44 ~~l~~~~~~~~~~i~~v~~-------gTT~~tNAl~e~~g~~v~li~~~G~~d 89 (176)
T PF05378_consen 44 DALLEESGIDPSDIDRVRH-------GTTVATNALLERKGARVGLITTGGFGD 89 (176)
T ss_pred HhhhcccCCChhhCcEEEe-------ccHHHHHHHHhccCCCceEEeccCcHh
Confidence 3344444333344555544 346889999999999999988775444
No 250
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=47.81 E-value=51 Score=29.34 Aligned_cols=34 Identities=9% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHH--cCCCeEEe
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSILRA--EGYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~IL~~--~G~~vg~~ 126 (353)
...++|+++|..|-|-|+- +.+++.. .+.++++.
T Consensus 20 ~~~~~i~~~G~~gsGKTTl-i~~l~~~~~~~~~v~v~ 55 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTL-IEKLIDNLKDEVKIAVI 55 (207)
T ss_pred cCcEEEEEECCCCCCHHHH-HHHHHHHHhcCCeEEEE
Confidence 4589999999866555542 2333333 34577664
No 251
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=47.56 E-value=29 Score=36.20 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=29.8
Q ss_pred HHHHcCCCCCCCcEEEEcCCC------CchHHHHHHHHHHHHcCCCeEE
Q 018577 83 LMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 83 ~l~~lg~p~~~~~vI~VtGTn------GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+++++.. ..+-+.|-||+.| |||||+-=|.+.|...|+++..
T Consensus 44 ~~~~~~~-~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~ 91 (557)
T PF01268_consen 44 VLERLKD-KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIA 91 (557)
T ss_dssp HHHHTTT-S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEE
T ss_pred HHhhccc-cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEE
Confidence 4455542 3456899999975 9999999999999999998754
No 252
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=47.50 E-value=29 Score=29.31 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=23.3
Q ss_pred EEEcC--CCCchHHHHHHHHHHHHcCCCeEE
Q 018577 97 VHIAG--TKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 97 I~VtG--TnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
|.|+| -.||||.+..|+..|...|.++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~ 32 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYV 32 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55666 379999999999999988877644
No 253
>PRK07429 phosphoribulokinase; Provisional
Probab=47.20 E-value=17 Score=35.36 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=23.6
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcC
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEG 120 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G 120 (353)
+..+|+|+|. .||||++..|+.+|...+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 4568999995 789999999999997653
No 254
>PLN02348 phosphoribulokinase
Probab=46.84 E-value=28 Score=34.88 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHc
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~ 119 (353)
+..+|+|+|- .||||.+..|..+|...
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3479999995 79999999999999764
No 255
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=46.67 E-value=27 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.139 Sum_probs=25.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+....|-.|||+++..++.-|...|.+|.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~ 33 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLL 33 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 345567889999999999999999998876
No 256
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=46.54 E-value=16 Score=33.79 Aligned_cols=28 Identities=32% Similarity=0.307 Sum_probs=21.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 97 I~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
||=+| .||||-|.-+.+.+...|+++..
T Consensus 2 iGpaG-SGKTT~~~~~~~~~~~~~~~~~~ 29 (238)
T PF03029_consen 2 IGPAG-SGKTTFCKGLSEWLESNGRDVYI 29 (238)
T ss_dssp EESTT-SSHHHHHHHHHHHHTTT-S-EEE
T ss_pred CCCCC-CCHHHHHHHHHHHHHhccCCceE
Confidence 33344 59999999999999999988755
No 257
>PRK04040 adenylate kinase; Provisional
Probab=46.51 E-value=23 Score=31.45 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=23.2
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
++|.|+|. .||||.+..|..-|. .++++..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~ 34 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVN 34 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEe
Confidence 57899987 799999999998885 2555543
No 258
>PLN02422 dephospho-CoA kinase
Probab=46.23 E-value=21 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=20.1
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
++|+|||. .||||++.++.. .|+.+
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~ 28 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPV 28 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 47999996 799999998873 57765
No 259
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=45.92 E-value=1.2e+02 Score=28.37 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=19.0
Q ss_pred cEEEEcCC--CCchHHHHHH-HHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT--KGKGSTAAFL-SSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml-~~IL~~~G~~vg~~ 126 (353)
..|.|+|. .||||+...+ ..+. ..+.++...
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~-~~~~~iiti 114 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN-TPEKNIITV 114 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC-CCCCeEEEE
Confidence 46888886 5788877644 4443 344555543
No 260
>PRK06547 hypothetical protein; Provisional
Probab=45.40 E-value=34 Score=29.90 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=19.5
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
...+|+|+|. .||||++..|+..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999886 67999999988764
No 261
>PRK13976 thymidylate kinase; Provisional
Probab=45.30 E-value=21 Score=32.25 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=25.5
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHc-C-CCeEEecCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAE-G-YSVGCYTSP 129 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~-G-~~vg~~tSp 129 (353)
.|.|-|- .||||.+.+|+.-|+.. | +++.+..-|
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP 39 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREP 39 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCC
Confidence 4666664 79999999999999986 6 576554444
No 262
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=44.95 E-value=30 Score=29.78 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCcc
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHI 131 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l 131 (353)
.+.+.+.++-+.|+..-..-.||...|- .||||.+.-|..-| |. .+..+||-.
T Consensus 6 ~~~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~L---g~-~~~V~SPTF 60 (149)
T COG0802 6 PDEEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGL---GV-DGNVKSPTF 60 (149)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHc---CC-CCcccCCCe
Confidence 4678888888888887777789999996 88998877666555 43 445688853
No 263
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.93 E-value=37 Score=33.72 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=25.8
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHH-HcC-CCeEEecC
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILR-AEG-YSVGCYTS 128 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~-~~G-~~vg~~tS 128 (353)
-.+|.+.|. .|||||...|+.-+. ..| .++++++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 467888886 479999999998764 446 57877543
No 264
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=44.87 E-value=29 Score=38.93 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.7
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++.|+|- .||||+...+..+++..|++|...
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ 396 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGA 396 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3345553 489999999999999999988654
No 265
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=44.87 E-value=51 Score=28.97 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.8
Q ss_pred CCchHHHHHHHHHHHHcCC
Q 018577 103 KGKGSTAAFLSSILRAEGY 121 (353)
Q Consensus 103 nGKtSTt~ml~~IL~~~G~ 121 (353)
.||||++..|.+++-++|.
T Consensus 10 CGKTTva~aL~~LFg~wgH 28 (168)
T PF08303_consen 10 CGKTTVALALSNLFGEWGH 28 (168)
T ss_pred cCHHHHHHHHHHHcCCCCc
Confidence 7999999999999977663
No 266
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=44.85 E-value=33 Score=35.80 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHcCCCCCCCcEEEEcCCC------CchHHHHHHHHHHHHcCCCeEE
Q 018577 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p~~~~~vI~VtGTn------GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.+|+ .+++++.+ .++-+.|-||+.| |||||+-=|.+.|...|+++..
T Consensus 47 Ki~l~---~~l~~~~~-~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~ 100 (587)
T PRK13507 47 KVDFR---KVLDRLKD-RPDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSG 100 (587)
T ss_pred eecHH---HHHHhhcc-CCCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEE
Confidence 35554 23444433 2346889999975 9999999999999999998754
No 267
>PRK13695 putative NTPase; Provisional
Probab=44.22 E-value=34 Score=29.49 Aligned_cols=28 Identities=36% Similarity=0.685 Sum_probs=22.8
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCeE
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg 124 (353)
|+|+|. .||||....+..-|...|++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 678876 5799999999888888888754
No 268
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=43.57 E-value=41 Score=32.04 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.8
Q ss_pred cCCCCchHHHHHHHHHHHHc
Q 018577 100 AGTKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~ 119 (353)
.|.|||||...+|..++-..
T Consensus 84 ~g~nGKStl~~~l~~l~G~~ 103 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDY 103 (304)
T ss_pred CCCCcHHHHHHHHHHHhChh
Confidence 67899999999999999764
No 269
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=43.37 E-value=1.3e+02 Score=24.06 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=27.8
Q ss_pred EEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 98 HIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 98 ~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
+-.+...-+-=..|++.+|+..|++|.. +|...+.+++.+.+
T Consensus 5 ~~~~~e~H~lG~~~~~~~l~~~G~~V~~-----------------lg~~~~~~~l~~~~ 46 (119)
T cd02067 5 ATVGGDGHDIGKNIVARALRDAGFEVID-----------------LGVDVPPEEIVEAA 46 (119)
T ss_pred EeeCCchhhHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 3344444455568999999999999843 16667776665443
No 270
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.87 E-value=1.3e+02 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=32.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
+++..|.-+-.-=..+++.+|+.+||+|.- +|...+++++.+..
T Consensus 5 vigtv~~D~HdiGk~iv~~~l~~~GfeVi~-----------------LG~~v~~e~~v~aa 48 (134)
T TIGR01501 5 VLGVIGSDCHAVGNKILDHAFTNAGFNVVN-----------------LGVLSPQEEFIKAA 48 (134)
T ss_pred EEEEecCChhhHhHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 456667666666668999999999999842 38888888776543
No 271
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=42.81 E-value=22 Score=33.67 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577 101 GTKGKGSTAAFLSSILRAEGYSVGCY-TSPH 130 (353)
Q Consensus 101 GTnGKtSTt~ml~~IL~~~G~~vg~~-tSp~ 130 (353)
|--|||||++=|+..|...|+||-.. +.|.
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK 39 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPK 39 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCC
Confidence 56799999999999999999998664 4564
No 272
>PRK14709 hypothetical protein; Provisional
Probab=42.75 E-value=45 Score=34.20 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.7
Q ss_pred cCCCCchHHHHHHHHHHHHc
Q 018577 100 AGTKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~ 119 (353)
.|-||||+...+|..+|-..
T Consensus 213 ~G~NGKSt~~~~i~~llG~~ 232 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGDY 232 (469)
T ss_pred CCCCcHHHHHHHHHHHHhhh
Confidence 57799999999999999763
No 273
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.22 E-value=1.3e+02 Score=25.12 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=31.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
+++..|.-+-.-=..+++.+|+.+||+|.- +|...+++.+.+..
T Consensus 3 vigtv~gD~HdiGkniv~~~L~~~GfeVid-----------------LG~~v~~e~~v~aa 46 (128)
T cd02072 3 VLGVIGSDCHAVGNKILDHAFTEAGFNVVN-----------------LGVLSPQEEFIDAA 46 (128)
T ss_pred EEEEeCCchhHHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 355666655555568899999999999842 38888887765543
No 274
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.13 E-value=68 Score=32.41 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=24.3
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHH--HcCCCeEEec
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILR--AEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~--~~G~~vg~~t 127 (353)
+..+|++.|-| |||||.+.|+..+. ..+.++++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~ 228 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLT 228 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 44688888875 69999999987543 2235666644
No 275
>PRK05541 adenylylsulfate kinase; Provisional
Probab=41.99 E-value=55 Score=28.12 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.+..+|.++|- .||||.+..|+.-|...+..+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~ 40 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIY 40 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 34568888885 68999999999999877665543
No 276
>PLN02759 Formate--tetrahydrofolate ligase
Probab=41.73 E-value=45 Score=35.12 Aligned_cols=47 Identities=30% Similarity=0.190 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHcCCCCCCCcEEEEcCCC------CchHHHHHHHHHHHH-cCCCeEE
Q 018577 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILRA-EGYSVGC 125 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p~~~~~vI~VtGTn------GKtSTt~ml~~IL~~-~G~~vg~ 125 (353)
+.+|+. ++++.+ ..+-+.|-||+.| |||||+-=|.+.|.. .|+++..
T Consensus 54 Ki~l~~----l~~~~~-~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~ 107 (637)
T PLN02759 54 KVLLSV----RDRLAG-APDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVT 107 (637)
T ss_pred EEcHHH----Hhhhcc-CCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEE
Confidence 355543 444433 2246889999975 999999999999997 8988754
No 277
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=41.40 E-value=21 Score=33.20 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=18.9
Q ss_pred CCCCCcEEEEcCCCCchHHH-HHHHHHHHHcC
Q 018577 90 PHSKFKTVHIAGTKGKGSTA-AFLSSILRAEG 120 (353)
Q Consensus 90 p~~~~~vI~VtGTnGKtSTt-~ml~~IL~~~G 120 (353)
+...+-|.|.+|| |||||. .-+..+|...+
T Consensus 12 ~~~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~ 42 (315)
T PF00580_consen 12 TEGPLLVNAGAGS-GKTTTLLERIAYLLYEGG 42 (315)
T ss_dssp -SSEEEEEE-TTS-SHHHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEeCCCC-CchHHHHHHHHHhhcccc
Confidence 3445678888887 999976 44556666544
No 278
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=41.28 E-value=37 Score=33.12 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCe
Q 018577 73 DGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 73 ~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~v 123 (353)
..++-+-.+.++..+.. ...+-+.+..| .||||.+..|+..|...-+++
T Consensus 47 y~f~~~~~~~vl~~l~~-~~~ilL~G~pG-tGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 47 YLFDKATTKAICAGFAY-DRRVMVQGYHG-TGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred ccCCHHHHHHHHHHHhc-CCcEEEEeCCC-ChHHHHHHHHHHHHCCCeEEE
Confidence 44666777778887743 33333444444 489999999999997544443
No 279
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=40.70 E-value=23 Score=31.76 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.0
Q ss_pred cEEEEcCC--CCchHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSS 114 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~ 114 (353)
.+|+|||. .||||.+.++..
T Consensus 6 ~~igitG~igsGKSt~~~~l~~ 27 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE 27 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 47999997 789999988875
No 280
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=40.60 E-value=1.5e+02 Score=26.77 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=24.9
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
...|.|.|+ .|||+...-+-.-|+.. |++++.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~ 47 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVIT 47 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEe
Confidence 568999998 67888777766677665 8888743
No 281
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.46 E-value=1.5e+02 Score=24.72 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=31.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (353)
+++..|--+-.-=+.+++.+|+.+||+|.. . |...|++++.+.
T Consensus 6 ~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~---------------l--g~~~s~e~~v~a 48 (132)
T TIGR00640 6 LVAKMGQDGHDRGAKVIATAYADLGFDVDV---------------G--PLFQTPEEIARQ 48 (132)
T ss_pred EEEeeCCCccHHHHHHHHHHHHhCCcEEEE---------------C--CCCCCHHHHHHH
Confidence 356666666666779999999999999843 2 677777766544
No 282
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=39.95 E-value=36 Score=33.52 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.0
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..+|+|+|- .||||....|...|+.. ++|+.+.
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik 39 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYK 39 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEE
Confidence 468999994 69999999999999999 9999875
No 283
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=39.72 E-value=28 Score=31.02 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=18.3
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+.|+|||. .||||++.+++..+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~ 25 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK 25 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 46999996 79999999988653
No 284
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=39.35 E-value=48 Score=28.75 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEcC--CCCchHHHHHH
Q 018577 78 GRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFL 112 (353)
Q Consensus 78 ~r~~~~l~~lg~p~~~~~vI~VtG--TnGKtSTt~ml 112 (353)
+.+.+++..+|.|++..++ .|.| ..||||....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~i-~ivG~~~~GKTsli~~l 37 (184)
T smart00178 2 DWFYDILASLGLWNKHAKI-LFLGLDNAGKTTLLHML 37 (184)
T ss_pred hHHHHHHHHhccccccCEE-EEECCCCCCHHHHHHHH
Confidence 4567778888876666554 4444 37999986655
No 285
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=39.27 E-value=26 Score=31.68 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=20.3
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|+|||. .||||++.+++.- .|+.+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~---lg~~v 34 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEK---LNLNV 34 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---cCCeE
Confidence 57999996 8999999988753 36554
No 286
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=39.13 E-value=32 Score=29.57 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=19.5
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+.++|.|.|. .||||.+..|+.-+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999996 68999999988754
No 287
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=38.98 E-value=30 Score=37.14 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHcCC---------CCCCCcEEEEc-------CCCCchHHH-HHHHHHHH
Q 018577 75 FDLGRMNRLMDRLGN---------PHSKFKTVHIA-------GTKGKGSTA-AFLSSILR 117 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~---------p~~~~~vI~Vt-------GTnGKtSTt-~ml~~IL~ 117 (353)
-...+|+..|+.||. |-...-++|+. +|||||.|. +.+++.|.
T Consensus 160 eTI~~~~~~L~~lg~~i~~~s~~~~vp~~~Sv~~~d~~~~~~~tnGKGas~~~AlASAlg 219 (718)
T TIGR03549 160 QTIANMTAILADLGMKIEIASWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALG 219 (718)
T ss_pred HHHHHHHHHHHHcCCCeEEeeccCCCCcEEEEEecccCCCcccCCCCcCCHHHHHHHHHH
Confidence 446799999999884 22333366776 699998865 34555553
No 288
>PRK06851 hypothetical protein; Provisional
Probab=38.87 E-value=46 Score=33.04 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=27.6
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-+++.++| ..||||+..-|...+.+.|+.|..+
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999 5789999999999998889876544
No 289
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=38.58 E-value=30 Score=30.49 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.0
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHH
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRA 118 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~ 118 (353)
.|+|+|.| |.||||.+.-|+.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 47899999 69999999999999864
No 290
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=38.49 E-value=30 Score=34.53 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=19.8
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
..|+|||. .||||++.+|+. .|+.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~----~G~~v 28 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE----LGAVV 28 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 46999995 899999998876 36544
No 291
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=38.44 E-value=1.1e+02 Score=30.66 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=29.4
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcC--CCCchHHHHHHH-HHHHHcCCCeEEec
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLS-SILRAEGYSVGCYT 127 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtG--TnGKtSTt~ml~-~IL~~~G~~vg~~t 127 (353)
+..+-+++. |... -.+|.|+| ..|||+.+.-++ ++....|++|.+|+
T Consensus 181 ~~~LD~~~~--G~~~--g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 181 LPKLDRLTN--GLVK--GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred ChhHHHHhc--CCCC--CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 444444443 5433 34566666 578999988777 44446798887764
No 292
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=38.30 E-value=24 Score=32.17 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=22.2
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHHHHc
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~ 119 (353)
+.-+|||+| ..||||.+..+..+|..+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 345899999 479999999999998754
No 293
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=37.77 E-value=29 Score=30.77 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=20.0
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|+|||. .||||++.++.. .|+.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g~~~ 29 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LGAPV 29 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 47999995 799999998886 36654
No 294
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=37.55 E-value=42 Score=31.68 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=24.9
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
|.|.|+| ..||||.+.-|...|.+.++++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 5788888 69999999999999999998886643
No 295
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=37.50 E-value=45 Score=37.85 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.1
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+++.|+|- .||||+...+..++...|++|..
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g 430 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVG 430 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 34444443 49999999999999999998854
No 296
>PRK06217 hypothetical protein; Validated
Probab=37.37 E-value=30 Score=30.17 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=17.5
Q ss_pred EEEEcCC--CCchHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.|.|+|. .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 3777775 69999999999887
No 297
>PRK08181 transposase; Validated
Probab=36.76 E-value=27 Score=32.96 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++-++|=+|| |||-.+..|+.-+...|++|..+
T Consensus 108 nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 108 NLLLFGPPGG-GKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred eEEEEecCCC-cHHHHHHHHHHHHHHcCCceeee
Confidence 3444444554 99999999988888889988653
No 298
>PRK10436 hypothetical protein; Provisional
Probab=36.60 E-value=1e+02 Score=31.60 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=20.1
Q ss_pred cEEEEcCC--CCchHHH-HHHHHHHHHcCCCeEEecCC
Q 018577 95 KTVHIAGT--KGKGSTA-AFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt-~ml~~IL~~~G~~vg~~tSp 129 (353)
-.|-|||. .|||||- ++|..+-. .+.++...-.|
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~~~-~~~~i~TiEDP 255 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTLNT-AQINICSVEDP 255 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhhCC-CCCEEEEecCC
Confidence 46888885 6888886 45555433 34555444333
No 299
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=36.56 E-value=47 Score=30.52 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=23.8
Q ss_pred EEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 97 VHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 97 I~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|.++| ..||||.+..|+.-|...|+++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i 33 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIIL 33 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 44555 4699999999999999888877553
No 300
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=36.17 E-value=3.3e+02 Score=26.42 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcc-------cccc--eeeeeCCCC
Q 018577 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI-------KTIR--ERMNVGRLN 144 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l-------~~~~--eri~in~~G 144 (353)
+.++. +.++|+.||.|. ...+..| +-|..++...|+..|.+..++.-++- .+-. +.-.+|..|
T Consensus 37 GKGIN-Va~vL~~lG~~~---~a~GflG----g~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~G 108 (310)
T COG1105 37 GKGIN-VARVLKDLGIPV---TALGFLG----GFTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPG 108 (310)
T ss_pred CCcee-HHHHHHHcCCCc---eEEEecC----CccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCC
Confidence 34444 789999999863 3455555 23457899999999988776543321 1110 122345568
Q ss_pred cccCHHHHHHHHHHHHHH
Q 018577 145 RPVSAKALNCLFHKIKGV 162 (353)
Q Consensus 145 ~~is~~~~~~~~~~i~~~ 162 (353)
-.++++++..+.++++..
T Consensus 109 p~is~~~~~~~l~~~~~~ 126 (310)
T COG1105 109 PEISEAELEQFLEQLKAL 126 (310)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 899999888877766553
No 301
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=36.07 E-value=30 Score=32.29 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=25.0
Q ss_pred EEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.|+|= |-=||+||+.=+++.|.+.|++|-..
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~v 35 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIV 35 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEE
Confidence 34554 45799999999999999999998553
No 302
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=35.94 E-value=56 Score=30.18 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
|..+...|...+. .-+|.+.| +.|||.+..-|..-|...|++|-.|..|
T Consensus 18 L~~lQ~~l~~~~~----~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p 68 (230)
T TIGR03707 18 LVKLQAWVKETGA----RVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP 68 (230)
T ss_pred HHHHHHHHHHcCC----CEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 4455555555442 24677888 7999999999999999999999877655
No 303
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=35.83 E-value=70 Score=31.15 Aligned_cols=31 Identities=29% Similarity=0.105 Sum_probs=22.6
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeE
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg 124 (353)
.|.+.|-| .|||||.+.-|.+-.-..|+++-
T Consensus 99 gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl 131 (424)
T COG5623 99 GPTVMVVGGSQNGKTSFCFTLISYALKLGKKPL 131 (424)
T ss_pred CCEEEEECCCcCCceeHHHHHHHHHHHhcCCce
Confidence 44455545 59999999888777766688873
No 304
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=35.65 E-value=36 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.0
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRA 118 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~ 118 (353)
+..+|+|+|- .||||.+..|...|..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3468999996 6999999999998874
No 305
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=35.60 E-value=54 Score=34.49 Aligned_cols=47 Identities=28% Similarity=0.226 Sum_probs=34.7
Q ss_pred CCChHHHHHHHHHcCCCCCCCcEEEEcCCC------CchHHHHHHHHHHH-HcCCCeEE
Q 018577 74 GFDLGRMNRLMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILR-AEGYSVGC 125 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p~~~~~vI~VtGTn------GKtSTt~ml~~IL~-~~G~~vg~ 125 (353)
+.+|+-+ +++.+ .++-+.|-||+.| |||||+-=|.+.|. ..|+++..
T Consensus 53 Kv~l~~~----~~~~~-~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~ 106 (625)
T PTZ00386 53 KVKLSVL----KRLEN-SPNGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFA 106 (625)
T ss_pred ecCHHHH----Hhhcc-CCCCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEE
Confidence 4566543 44433 2346889999975 99999999999999 68988754
No 306
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=35.26 E-value=2.8e+02 Score=23.55 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=38.4
Q ss_pred hCCCCEEEEeecCCCcc---cccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc---eeecCchh-H
Q 018577 190 QNHVDIAVIEAGLGGAR---DATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP---VVSAYDAG-I 262 (353)
Q Consensus 190 ~~~~d~~VlEvG~gg~~---D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~---vv~~dd~~-~ 262 (353)
..++|+.++=-+..... -....--..+|.|+|||-+++- ..++|+..|.-+...|.. ++++.|+. +
T Consensus 62 ~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLa-------ed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 62 LQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLA-------EDADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred hhccceeeeeecccCccccCCcccccccccceEEEEeccccc-------chHhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 45567666654433321 0001111224579999998743 467788888777776643 55665543 4
Q ss_pred HHHH
Q 018577 263 RATI 266 (353)
Q Consensus 263 ~~~~ 266 (353)
.++.
T Consensus 135 ~~l~ 138 (148)
T COG4917 135 EELV 138 (148)
T ss_pred HHHH
Confidence 4433
No 307
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=35.08 E-value=28 Score=31.16 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=14.9
Q ss_pred EEEEcCC--CCchHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSS 114 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~ 114 (353)
+|+|||. .||||++.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 4899997 578888887764
No 308
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=35.07 E-value=26 Score=30.94 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=18.9
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHH
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRA 118 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~ 118 (353)
++|-+.| +.||||++..|...|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~ 27 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE 27 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC
Confidence 4677776 58999999999998754
No 309
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=35.06 E-value=2.9e+02 Score=26.80 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=36.4
Q ss_pred hhCCCCEEEEee-cCCCcccc-------cccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeecCc
Q 018577 189 AQNHVDIAVIEA-GLGGARDA-------TNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYD 259 (353)
Q Consensus 189 ~~~~~d~~VlEv-G~gg~~D~-------tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~dd 259 (353)
.+..+|++|+|. |+....-. ..+-.... .-+|||=|..-|..-.-.+..+.+.. .|.-....|+|.-|
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~-ld~vvtvVDa~~~~~~~~~~~~~~~~--Qia~AD~ivlNK~D 156 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVR-LDGVVTVVDAAHFLEGLDAIAELAED--QLAFADVIVLNKTD 156 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhcccccccccee-eceEEEEEeHHHhhhhHHHHHHHHHH--HHHhCcEEEEeccc
Confidence 466799999998 55544100 01111111 12589999988876432223344332 23334666777644
No 310
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=35.01 E-value=61 Score=36.09 Aligned_cols=29 Identities=38% Similarity=0.423 Sum_probs=25.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.|--|| |||||-..|-.+|-..|.+|-+
T Consensus 690 I~GMPGT-GKTTtI~~LIkiL~~~gkkVLL 718 (1100)
T KOG1805|consen 690 ILGMPGT-GKTTTISLLIKILVALGKKVLL 718 (1100)
T ss_pred eecCCCC-CchhhHHHHHHHHHHcCCeEEE
Confidence 5567776 9999999999999999999855
No 311
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=34.98 E-value=1e+02 Score=32.38 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=38.9
Q ss_pred CCCChHHHHHHHHHcCCCC-CCCcEEEEcC--CCCchHHHHHHHHHHHH-cCCCeEEe
Q 018577 73 DGFDLGRMNRLMDRLGNPH-SKFKTVHIAG--TKGKGSTAAFLSSILRA-EGYSVGCY 126 (353)
Q Consensus 73 ~~~~l~r~~~~l~~lg~p~-~~~~vI~VtG--TnGKtSTt~ml~~IL~~-~G~~vg~~ 126 (353)
..+.-..+.++|..+-.|. ++..+|.++| -.||||++..|+..|.. .|.++-++
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~l 427 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLL 427 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEe
Confidence 3455566666777765443 4455899999 47999999999999987 66655544
No 312
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=34.63 E-value=3.2e+02 Score=26.92 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=30.6
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCC-Cc-hHHHHHHHHHHHHcCCCeEEe
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTK-GK-GSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTn-GK-tSTt~ml~~IL~~~G~~vg~~ 126 (353)
++.+-..++.++ .+++-|||.+ .+ +-...-+...|+..|..+..|
T Consensus 17 ~~~l~~~~~~~~-----~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~ 63 (382)
T cd08187 17 ESELGKELKKYG-----KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVEL 63 (382)
T ss_pred HHHHHHHHHHhC-----CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEE
Confidence 566666666664 2677788743 33 334567888899999887765
No 313
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=34.63 E-value=4.2e+02 Score=25.39 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceee
Q 018577 187 LFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256 (353)
Q Consensus 187 ~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~ 256 (353)
.+.+.++|.+-++...+ ..++...+. .+++++-||.+..+-..| |.|+|.++=.++++.+.-|++
T Consensus 250 ~l~~~g~d~ls~d~~~~-l~~~~~~~g---~~~~i~Gnidp~~ll~~g-t~eeI~~~v~~~l~~~~~Il~ 314 (340)
T TIGR01463 250 DIANNGCFGFSVDMKPG-MDHAKRVIG---GQASLVGNLSPFSTLMNG-TPEKVKKLAKEVLYNGGDIVM 314 (340)
T ss_pred HHHHhCCCEEeecCCCC-HHHHHHHcC---CceEEEecCChHHHhcCC-CHHHHHHHHHHHHHcCCeEEC
Confidence 45566777766554332 222222222 247778888765555555 888888776666665444443
No 314
>PRK01184 hypothetical protein; Provisional
Probab=34.15 E-value=45 Score=28.86 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=19.0
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
++|+|+|- .||||.+. ++++.|+.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~----~~~~~g~~~ 28 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK----IAREMGIPV 28 (184)
T ss_pred cEEEEECCCCCCHHHHHH----HHHHcCCcE
Confidence 57899996 68888765 577888765
No 315
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=34.06 E-value=50 Score=35.32 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCCCC-CcEEEEcCC--CCchHHHHHHHHHHH
Q 018577 79 RMNRLMDRLGNPHSK-FKTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 79 r~~~~l~~lg~p~~~-~~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
..-+.|+.||.|+.+ .++|+|.|. .||||++..|+..|.
T Consensus 426 ~F~~~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~~ 467 (661)
T PRK11860 426 DYFEALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALG 467 (661)
T ss_pred ChHHHHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHhC
Confidence 345666777777544 678999985 799999999998874
No 316
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=34.06 E-value=85 Score=30.66 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=21.6
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHHH-HcCCCeEEe
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSILR-AEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL~-~~G~~vg~~ 126 (353)
++|+.-||| -.||||.. .++|+ ..|.++++.
T Consensus 3 ~ipv~iltGFLGaGKTTll---~~ll~~~~~~~iavi 36 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLI---RHLLQNAAGRRIAVI 36 (341)
T ss_pred ccCEEEEEECCCCCHHHHH---HHHHhccCCCcEEEE
Confidence 578999998 57888754 44444 367788764
No 317
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=33.92 E-value=95 Score=32.31 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
++.++.+|+..-.+....++..+||- .|||||...|+.-| |+++--+..|-
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~ 80 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPV 80 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCC
Confidence 77888888875444445568999996 67999888877554 77776666553
No 318
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=33.00 E-value=78 Score=32.52 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=30.9
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+..-|-|+|. .||||.++.++..+.+.|+-|-..-||
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~~~GkiVKTmEsP 300 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYASQGKIVKTMESP 300 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHHHhcCcEEeeccCc
Confidence 3456899996 789999999999999999866666666
No 319
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=33.00 E-value=40 Score=30.26 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHc--CCCeEE
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAE--GYSVGC 125 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~--G~~vg~ 125 (353)
.-.|+|=+.+|||.|++.+...++++ |++|.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~i 55 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGV 55 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 35799999999999999999999975 456644
No 320
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=32.91 E-value=56 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=19.5
Q ss_pred cEEEEcCCC--CchHHHHHHHHHH--HHcCC
Q 018577 95 KTVHIAGTK--GKGSTAAFLSSIL--RAEGY 121 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~~IL--~~~G~ 121 (353)
.+++|+|.| ||||.-.+|+... ...|.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~ 60 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGC 60 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCC
Confidence 689999997 6888888887433 34553
No 321
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=32.80 E-value=37 Score=27.73 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=16.6
Q ss_pred EEEEcCC--CCchHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+|.|+|. .||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4788887 57999988888765
No 322
>PRK06756 flavodoxin; Provisional
Probab=32.70 E-value=2.9e+02 Score=22.90 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCCCCCCcEEEEcCCCCch-----HHHHHHHHHHHHcCCCeE
Q 018577 79 RMNRLMDRLGNPHSKFKTVHIAGTKGKG-----STAAFLSSILRAEGYSVG 124 (353)
Q Consensus 79 r~~~~l~~lg~p~~~~~vI~VtGTnGKt-----STt~ml~~IL~~~G~~vg 124 (353)
.+..+++.+.....+-+.+++=||-|++ .....+..+|...|.++.
T Consensus 68 ~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v 118 (148)
T PRK06756 68 DFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVV 118 (148)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEc
Confidence 4777877775433345677788775543 677888999999998763
No 323
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.68 E-value=82 Score=33.01 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCCcEEEEcC--CCCchHHHHHHHHHHHHc--CCCeEEecC
Q 018577 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAE--GYSVGCYTS 128 (353)
Q Consensus 92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~--G~~vg~~tS 128 (353)
..-.+|++.| -.|||||+..|+..+... |.+|++.+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 3457888887 368999999998877654 567877543
No 324
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=32.23 E-value=92 Score=29.41 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHHHHHcCCCC-CCCcEEEEcCC--CCchHHHHHHHHHHHHc---CCCeEE
Q 018577 81 NRLMDRLGNPH-SKFKTVHIAGT--KGKGSTAAFLSSILRAE---GYSVGC 125 (353)
Q Consensus 81 ~~~l~~lg~p~-~~~~vI~VtGT--nGKtSTt~ml~~IL~~~---G~~vg~ 125 (353)
..+.+.+-+++ ....+|+|.|- .||||...++..-|... .+.+..
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~ 56 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIY 56 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEE
Confidence 34444455554 45679999996 99999999999999987 444443
No 325
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.14 E-value=4.3e+02 Score=26.11 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCc-hHHHHHHHHHHHHcCCCeEEec
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGK-GSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGK-tSTt~ml~~IL~~~G~~vg~~t 127 (353)
.++++...++.+|. -+++-|||..=| .-...-+...|+++|..+..|.
T Consensus 18 ~~~~l~~~~~~~g~----~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~ 66 (383)
T PRK09860 18 SLTDAMNMMADYGF----TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYD 66 (383)
T ss_pred HHHHHHHHHHhcCC----CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeC
Confidence 47778788888874 267778875333 2255578888888898776653
No 326
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=31.55 E-value=76 Score=29.58 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=30.8
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
+...+.+.|.- |||-.+..|+.=|...|.+|.+++.|.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45678888876 599999999988888899998766653
No 327
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=31.25 E-value=49 Score=29.20 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=23.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHc--CCCeEE
Q 018577 95 KTVHIAGTKGKGSTAAFLSSILRAE--GYSVGC 125 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~IL~~~--G~~vg~ 125 (353)
..|+|=+-+|||.|++.+...++++ |++|.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~i 38 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGV 38 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 4567766699999999999999875 556643
No 328
>PRK13975 thymidylate kinase; Provisional
Probab=31.18 E-value=46 Score=28.99 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.7
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRA 118 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~ 118 (353)
.+|.|.|. .||||.+..|+.-|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47889997 7899999999999964
No 329
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.14 E-value=2.3e+02 Score=27.52 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=31.4
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++++.+.++.+| .+++-|+|.+........+...|+++|..+..|
T Consensus 11 ~~~l~~~~~~~~-----~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~ 55 (345)
T cd08171 11 YKKIPEVCEKYG-----KKVVVIGGKTALAAAKDKIKAALEQSGIEITDF 55 (345)
T ss_pred HHHHHHHHHhcC-----CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 566666666654 368889987665556777888888888766544
No 330
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.13 E-value=2.6e+02 Score=23.45 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=30.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
+++..|.-+-.-=..+++.+|+.+||+|.. +|..++.+++.+..
T Consensus 7 l~~~~~gD~H~lG~~iv~~~lr~~G~eVi~-----------------LG~~vp~e~i~~~a 50 (137)
T PRK02261 7 VLGVIGADCHAVGNKILDRALTEAGFEVIN-----------------LGVMTSQEEFIDAA 50 (137)
T ss_pred EEEeCCCChhHHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 344455555555557889999999999854 27778877766544
No 331
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=31.03 E-value=2.2e+02 Score=27.54 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=17.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcC
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEG 120 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G 120 (353)
++|.+| .||||.+.-|.+-|.+.+
T Consensus 24 VvGMAG-SGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 24 VVGMAG-SGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred EEecCC-CCchhHHHHHHHHHhhcc
Confidence 345555 499999988888888764
No 332
>PRK07078 hypothetical protein; Validated
Probab=30.96 E-value=76 Score=34.63 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.1
Q ss_pred cCCCCchHHHHHHHHHHHHc
Q 018577 100 AGTKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~ 119 (353)
+|-||||+...+|..+|-..
T Consensus 499 ~G~NGKSt~l~~l~~llG~y 518 (759)
T PRK07078 499 TGANGKSVFVNTLATILGDY 518 (759)
T ss_pred CCCCCchHHHHHHHHHhhhh
Confidence 68899999999999999763
No 333
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=30.83 E-value=3.3e+02 Score=26.59 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchH-HHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGS-TAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtS-Tt~ml~~IL~~~G~~vg~~ 126 (353)
-++++...++.+|. -+++-|+|.+=+.+ ...-+...|++.|..+..|
T Consensus 11 ~~~~l~~~l~~~g~----~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~ 58 (370)
T cd08192 11 AIKELPAECAELGI----KRPLIVTDPGLAALGLVARVLALLEDAGLAAALF 58 (370)
T ss_pred HHHHHHHHHHHcCC----CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEe
Confidence 36777777887763 26777887543433 5667888889888887665
No 334
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=30.83 E-value=3.9e+02 Score=28.24 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=37.1
Q ss_pred hHHHHHHHHH--cCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 77 LGRMNRLMDR--LGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 77 l~r~~~~l~~--lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
++.++.+|+. .-.|...-++.-|||= .|||||...|+.+| ||.+--+.-|-
T Consensus 91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~~Ew~Npi 145 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQLIEWSNPI 145 (634)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh---CceeeeecCCc
Confidence 5677777773 3355555679999995 78999999998877 77766665443
No 335
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=30.55 E-value=59 Score=28.26 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=21.0
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
|++-|||- .||||+-.-+-. ....|.++++.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 57888884 788887554444 56678999874
No 336
>PRK08118 topology modulation protein; Reviewed
Probab=30.30 E-value=53 Score=28.39 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=17.0
Q ss_pred EEEEcCC--CCchHHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
-|.|.|. .||||.+..|+..|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677765 689999999887764
No 337
>PRK08356 hypothetical protein; Provisional
Probab=30.09 E-value=67 Score=28.29 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.8
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
.+|+|+|. .||||.+.+|. +.|+.+..+++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE----EKGFCRVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCcEEeCCC
Confidence 47899995 79999999994 35887655444
No 338
>PRK10536 hypothetical protein; Provisional
Probab=30.05 E-value=76 Score=29.96 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHH-HHHHcCCCeEEecCCcc
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSS-ILRAEGYSVGCYTSPHI 131 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~-IL~~~G~~vg~~tSp~l 131 (353)
-..++..+.+ ..+|.++|- .|||..+..++. .|....++..+++-|.+
T Consensus 64 Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 64 QAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred HHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 3445555543 246777775 478777766555 44445577777787765
No 339
>PRK04296 thymidine kinase; Provisional
Probab=29.98 E-value=77 Score=27.94 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=21.4
Q ss_pred cEEEEcCCCCchHHHHHHHHH--HHHcCCCeEEe
Q 018577 95 KTVHIAGTKGKGSTAAFLSSI--LRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~I--L~~~G~~vg~~ 126 (353)
.++-|+|--|+|-|+.++..+ +..+|.++.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 467889986666665555555 44578888766
No 340
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=29.94 E-value=76 Score=36.26 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHH-HHHHHHHHHcCCCeEEecCC
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTA-AFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt-~ml~~IL~~~G~~vg~~tSp 129 (353)
..+.++++.+.+.+.+.+.-+++=||| |||-|+ .++..+++....+..+|..|
T Consensus 418 Q~~AI~ai~~a~~~g~r~~Ll~maTGS-GKT~tai~li~~L~~~~~~~rVLfLvD 471 (1123)
T PRK11448 418 QEDAIQAVEKAIVEGQREILLAMATGT-GKTRTAIALMYRLLKAKRFRRILFLVD 471 (1123)
T ss_pred HHHHHHHHHHHHHhccCCeEEEeCCCC-CHHHHHHHHHHHHHhcCccCeEEEEec
Confidence 355677777776544444445666665 999775 45666666554444455443
No 341
>PRK06762 hypothetical protein; Provisional
Probab=29.52 E-value=52 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
++|.|+|. .||||.+..|+.-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889995 79999999998877
No 342
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.33 E-value=3.6e+02 Score=26.50 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCC--chHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKG--KGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnG--KtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++++...++.+| -+++-|||.+- |+-...-+...|++.|..+..|
T Consensus 13 ~l~~l~~~~~~~g-----~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~ 60 (380)
T cd08185 13 KLNELGEEALKPG-----KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVF 60 (380)
T ss_pred HHHHHHHHHHhcC-----CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEe
Confidence 4777777777766 27889998764 6667777888899889877665
No 343
>PRK12338 hypothetical protein; Provisional
Probab=29.19 E-value=50 Score=32.11 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.9
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
..+|.|+|+ .||||++..|+.-|
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 368999996 78999999999887
No 344
>PRK10586 putative oxidoreductase; Provisional
Probab=29.14 E-value=3.6e+02 Score=26.47 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-++++-.+++.+|. -+++-|+|.+..-.+...+...|.+.|+.+..|
T Consensus 21 a~~~l~~~~~~~g~----~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (362)
T PRK10586 21 SIDHLHDFFTDEQL----SRAVWIYGERAIAAAQPYLPPAFELPGAKHILF 67 (362)
T ss_pred HHHHHHHHHHhcCC----CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 37788888888874 267889998777666677788899988765443
No 345
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=28.99 E-value=4.6e+02 Score=25.69 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCC-CchHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTK-GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTn-GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++++...++.+|. -+++-|||.+ -|+-...-+...|++.|..+..|
T Consensus 13 ~l~~l~~~l~~~~~----~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~ 60 (376)
T cd08193 13 SLARLGELLAALGA----KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVF 60 (376)
T ss_pred HHHHHHHHHHHcCC----CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEE
Confidence 47777777877763 2567788753 24435566777888888777654
No 346
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=28.96 E-value=70 Score=28.52 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=22.3
Q ss_pred cEEEEcCCC--CchHHHHHHHHHH--HHcCCCe
Q 018577 95 KTVHIAGTK--GKGSTAAFLSSIL--RAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~~IL--~~~G~~v 123 (353)
.++.|+|-| ||||...+|..+. ...|..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 789999986 6999999998655 4567543
No 347
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=28.74 E-value=78 Score=34.43 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=24.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.+| .||||+...+..+++..|+++...
T Consensus 373 l~G~aG-TGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 373 VVGRAG-TGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred EEecCC-CCHHHHHHHHHHHHHhCCCeEEEE
Confidence 445555 599999999999999999988654
No 348
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=28.71 E-value=52 Score=30.21 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHc
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAE 119 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~ 119 (353)
-+.++.+..--.+-.+.++=|-| ||||+-+||+.+|...
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 44556665555667899999987 6999999999999853
No 349
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=28.62 E-value=86 Score=25.57 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=22.5
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.|.|- .|||+.+..+..-+...|.++.++
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 445554 589999999988888878777654
No 350
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=28.51 E-value=60 Score=28.20 Aligned_cols=30 Identities=43% Similarity=0.625 Sum_probs=23.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHc--CCCeEE
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAE--GYSVGC 125 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~--G~~vg~ 125 (353)
.|+|=+.+|||.|+..+...++++ |++|.+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 578866679999999999999875 556655
No 351
>PRK13974 thymidylate kinase; Provisional
Probab=28.47 E-value=59 Score=29.18 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=22.7
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGY 121 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~ 121 (353)
.+|++-|. .||||.+.+|...|...|.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~ 32 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGL 32 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 46777775 6899999999999998875
No 352
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=28.43 E-value=56 Score=33.34 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCCC------CchHHHHHHHHHHHHcCCCeEE
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTK------GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGTn------GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.+++-+++ +.+ .++-+.|-||+-| |||||+-=|.+.|...|+++..
T Consensus 38 i~~~~~~~----l~~-k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~ 89 (554)
T COG2759 38 ISLEVIKR----LKN-KPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAII 89 (554)
T ss_pred cCHHHHHh----hcc-CCCceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheE
Confidence 45554433 432 2346889999854 9999999999999999988744
No 353
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=28.36 E-value=3.2e+02 Score=26.99 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.8
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
-.-.||||++-=|.+.|++.|.++++|..
T Consensus 11 ~~~~G~tsi~lgLl~~l~~k~~kva~~kP 39 (354)
T COG0857 11 ETGVGKTSISLGLLRALEQKGLKVAYFKP 39 (354)
T ss_pred CCCccHHHHHHHHHHHHHHcCceeEEEec
Confidence 34579999999899999999999998754
No 354
>PRK00300 gmk guanylate kinase; Provisional
Probab=27.94 E-value=53 Score=28.85 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=20.7
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILR 117 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~ 117 (353)
+..+|+|.|.+ ||||.+.+|...+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34689999975 89999999998775
No 355
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=27.77 E-value=1.1e+02 Score=31.24 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=27.0
Q ss_pred cEEEEcCC----CCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAGT----KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtGT----nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
|.|-|||- -|||-+++-+..+|+.+|++|-.
T Consensus 2 KYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTs 36 (585)
T KOG2387|consen 2 KYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTS 36 (585)
T ss_pred eEEEEeCcEeecccCceeehhHHHHHHhcCceeEE
Confidence 56778884 69999999999999999999854
No 356
>PRK04182 cytidylate kinase; Provisional
Probab=27.75 E-value=51 Score=28.00 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=17.7
Q ss_pred EEEEcCC--CCchHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+|.|+|. .||||++..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5888886 78999999998776
No 357
>PLN02674 adenylate kinase
Probab=27.57 E-value=1.2e+02 Score=28.20 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
-.+.+..+++++-.+....+.|.|.|- .||||.+.+|+.-+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 13 SVDLMTELLRRMKCSSKPDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred hHHHHHHHHHHHhhccccCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345555566665433333455677774 79999999988754
No 358
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.47 E-value=77 Score=33.16 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHHHcC
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILRAEG 120 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G 120 (353)
.+-..|+|.|+| ||||.-++|-..+...|
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~LlrF~d~sG 406 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLRFFDYSG 406 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhccCC
Confidence 456789999997 58887777777777655
No 359
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=27.33 E-value=61 Score=28.59 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=19.4
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
+|.|+|- .||||++.+|+..| |++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~ 28 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL 28 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce
Confidence 5778884 78999999999877 5553
No 360
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=27.25 E-value=56 Score=28.77 Aligned_cols=30 Identities=37% Similarity=0.408 Sum_probs=21.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCC--CeEE
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGY--SVGC 125 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~--~vg~ 125 (353)
.|+|=--+|||.||+.+...|+++|+ ||.+
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~i 36 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLI 36 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEE
Confidence 46666668999999999999999764 6654
No 361
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=27.09 E-value=2.1e+02 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=22.6
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeE
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg 124 (353)
.+.+.|+|- .|||+++..+..-+...+.++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~ 51 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence 356778775 6899988888888766565554
No 362
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=27.08 E-value=78 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=19.8
Q ss_pred CcEEEEcCCCC--chHHHHHHH--HHHHHcCCCe
Q 018577 94 FKTVHIAGTKG--KGSTAAFLS--SILRAEGYSV 123 (353)
Q Consensus 94 ~~vI~VtGTnG--KtSTt~ml~--~IL~~~G~~v 123 (353)
.+.+.|||-|| |||.-..+. .+|...|.-+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 37899999985 555555665 4556666543
No 363
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=26.89 E-value=55 Score=27.57 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~ 122 (353)
+|.|+|. .||||++..|+.-| |+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~ 27 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLK 27 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc
Confidence 6889997 68999998887755 554
No 364
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=26.65 E-value=87 Score=27.74 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=15.7
Q ss_pred EEEEcCCC--CchHHHHHHHHHHHH
Q 018577 96 TVHIAGTK--GKGSTAAFLSSILRA 118 (353)
Q Consensus 96 vI~VtGTn--GKtSTt~ml~~IL~~ 118 (353)
.|.|+|-. ||||+...+..-+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57788864 699998765555543
No 365
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=26.63 E-value=4.3e+02 Score=26.42 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchH-HHHHHHHHHHHcCCCeEEec
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGS-TAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtS-Tt~ml~~IL~~~G~~vg~~t 127 (353)
.++++.+.++.+|. -+++-|||.+=+.+ ...-+...|+..|..+..|.
T Consensus 10 ~~~~l~~~l~~~g~----~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~ 58 (414)
T cd08190 10 VTAEVGMDLKNLGA----RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYD 58 (414)
T ss_pred HHHHHHHHHHHcCC----CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeC
Confidence 37777788888874 36788888654443 34667777888888877663
No 366
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=26.51 E-value=1.1e+02 Score=33.47 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcC
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEG 120 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G 120 (353)
.....++++.+.+-.-+.+.=++-=||| |||-|+--|-..|..+|
T Consensus 169 yQ~~AI~rv~Eaf~~g~~raLlvMATGT-GKTrTAiaii~rL~r~~ 213 (875)
T COG4096 169 YQIIAIRRVIEAFSKGQNRALLVMATGT-GKTRTAIAIIDRLIKSG 213 (875)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEecCC-CcceeHHHHHHHHHhcc
Confidence 3456789999998776666444555665 99999977777776665
No 367
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.33 E-value=5.9e+02 Score=24.91 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCc-hHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGK-GSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGK-tSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++++...++.++. -+++-|||.+=+ +-...-+...|+++|..+..|
T Consensus 10 ~~~~l~~~~~~~~~----~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~ 57 (375)
T cd08194 10 AVDETGAVLADLGG----KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIF 57 (375)
T ss_pred HHHHHHHHHHHcCC----CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEE
Confidence 36677777776652 267778875433 325567888899889887665
No 368
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=26.32 E-value=6.1e+02 Score=24.66 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCC-c-hHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKG-K-GSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnG-K-tSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++++.++++.+| .+++-|||.+- | +-...-+...|+..|..+..|
T Consensus 13 ~l~~l~~~~~~~g-----~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~ 60 (357)
T cd08181 13 CVEKHGEELAALG-----KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIF 60 (357)
T ss_pred HHHHHHHHHHHcC-----CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEe
Confidence 3777778888776 26788888664 3 334566778888888877665
No 369
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=26.18 E-value=55 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=19.7
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHc
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAE 119 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~ 119 (353)
++|.|+|. .||||+...|+..+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 36888886 58999999998887543
No 370
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=26.13 E-value=2.1e+02 Score=28.59 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=22.0
Q ss_pred CcEEEEcCC--CCchHHHHHH-HHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFL-SSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml-~~IL~~~G~~vg~~ 126 (353)
-..+.|+|- .|||+.+.-+ .++....|.+|.+|
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~ 230 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFF 230 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 356777774 6888888644 44555678888665
No 371
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=26.08 E-value=73 Score=29.12 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=19.1
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|++||. .||||++. .|++.|+.|
T Consensus 2 ~iVGLTGgiatGKStVs~----~f~~~G~~v 28 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQ----VFKALGIPV 28 (225)
T ss_pred eEEEeecccccChHHHHH----HHHHcCCcE
Confidence 57999997 78998765 556777765
No 372
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=25.96 E-value=2.4e+02 Score=28.16 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCC--CCCCcEE-EEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577 79 RMNRLMDRLGNP--HSKFKTV-HIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (353)
Q Consensus 79 r~~~~l~~lg~p--~~~~~vI-~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (353)
+.+..++..|.+ ....++| .+.|-+.+ +..+-.+++++ |+.+..+.-|-+-....|+++. +-...+++++..+
T Consensus 305 ~~~~~~~~~~~~~~~s~s~I~pv~~gd~~~--a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~-lta~ht~~~I~~l 380 (388)
T COG0156 305 FFRSLLKALGLVLLPSESPIIPVILGDEER--ALEASRALLEE-GIYVSAIRPPTVPKGTARLRIT-LTAAHTEEDIDRL 380 (388)
T ss_pred HHHHHHHhcCCccCCCCCCeeeeEeCCHHH--HHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEE-ecCCCCHHHHHHH
Confidence 344455555655 3345666 46777766 44444555554 9999888888887777888875 3344567776655
Q ss_pred HH
Q 018577 156 FH 157 (353)
Q Consensus 156 ~~ 157 (353)
++
T Consensus 381 ~~ 382 (388)
T COG0156 381 AE 382 (388)
T ss_pred HH
Confidence 54
No 373
>PRK13764 ATPase; Provisional
Probab=25.78 E-value=1.1e+02 Score=32.33 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=26.4
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
..|.|+|. .||||+.+.|...+...|+.+..+-+|
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp 294 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESP 294 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 45788884 799999988888888778766565544
No 374
>PRK14530 adenylate kinase; Provisional
Probab=25.75 E-value=66 Score=28.79 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=17.8
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+.|.|.|. .||||.+..|+..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 35777776 68999999998777
No 375
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=25.70 E-value=1.5e+02 Score=28.97 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 88 GNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 88 g~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
|.|.. .++-|.| ..||||.+..+..-....|.++..+.+.|
T Consensus 51 Glp~G--~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 51 GYPKG--RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CccCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 46644 5666777 58999999877766667787887665554
No 376
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.58 E-value=2e+02 Score=23.27 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 109 AAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 109 t~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
..|++.+|+..||+|.. . |...+.+++.+..
T Consensus 16 ~~~~~~~l~~~G~~vi~---------------l--G~~vp~e~~~~~a 46 (122)
T cd02071 16 AKVIARALRDAGFEVIY---------------T--GLRQTPEEIVEAA 46 (122)
T ss_pred HHHHHHHHHHCCCEEEE---------------C--CCCCCHHHHHHHH
Confidence 36888999999999853 2 6667776655443
No 377
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=25.43 E-value=99 Score=27.44 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=26.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcC--CCeEE
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEG--YSVGC 125 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G--~~vg~ 125 (353)
--.|||==-+|||.|++.+...|+++| +||.+
T Consensus 21 ~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~i 54 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLI 54 (178)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 346888777999999999999999865 56755
No 378
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=25.02 E-value=1.2e+02 Score=31.37 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=38.3
Q ss_pred hHHHHHHHHH-cCCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 77 LGRMNRLMDR-LGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 77 l~r~~~~l~~-lg~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
|..+...+.. .+. .-+|.+-| +.|||++...|..-|...|++|-.+..|.
T Consensus 26 L~~LQ~~l~~~~~~----~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~ 78 (493)
T TIGR03708 26 LLDLQYELLESAGF----PVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS 78 (493)
T ss_pred HHHHHHHHHHccCC----eEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC
Confidence 4445555544 332 35688888 68999999999999999999999888774
No 379
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=25.01 E-value=1.1e+02 Score=31.73 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.5
Q ss_pred CCCCchHHHHHHHHHHHHcC
Q 018577 101 GTKGKGSTAAFLSSILRAEG 120 (353)
Q Consensus 101 GTnGKtSTt~ml~~IL~~~G 120 (353)
|-|||||...+|..||-..+
T Consensus 239 G~nGKstf~~li~~llG~~n 258 (517)
T COG3378 239 GGNGKSTFVDLISNLLGRYN 258 (517)
T ss_pred CCCChHHHHHHHHHHhccch
Confidence 77999999999999997643
No 380
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=25.01 E-value=2.9e+02 Score=28.45 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=20.0
Q ss_pred cEEEEcCC--CCchHHHH-HHHHHHHHcCCCeEEecC
Q 018577 95 KTVHIAGT--KGKGSTAA-FLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~-ml~~IL~~~G~~vg~~tS 128 (353)
-+|.|+|- .|||||.+ ++..+ ...+.++...-.
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l-~~~~~~iiTiED 278 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRL-NTPERNILTVED 278 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhcc-CCCCCcEEEEcC
Confidence 47888886 58888886 44444 333455544433
No 381
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=24.60 E-value=39 Score=28.04 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=22.9
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCcccc
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKT 133 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~ 133 (353)
+.-.+|...|- .||||.++-+..-| |.+- ..+||-..-
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l---g~~~-~V~SPTF~l 52 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL---GIDE-EVTSPTFSL 52 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT---T--S-----TTTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc---CCCC-CcCCCCeEE
Confidence 45578999996 88999888777766 4432 457886543
No 382
>PTZ00202 tuzin; Provisional
Probab=24.57 E-value=1.2e+02 Score=31.44 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=67.4
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEecCCcccccceeee--eCCCCcccCHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMN--VGRLNRPVSAKAL 152 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~--in~~G~~is~~~~ 152 (353)
+.+++.+|..++... .+++.|||.+ ||||.+..+..-+ + .+.+|.-|+ .+.|-.+ ...+|.+- ...-
T Consensus 271 la~Lr~VL~~~d~~~--privvLtG~~G~GKTTLlR~~~~~l---~-~~qL~vNpr--g~eElLr~LL~ALGV~p-~~~k 341 (550)
T PTZ00202 271 ESWVRQVLRRLDTAH--PRIVVFTGFRGCGKSSLCRSAVRKE---G-MPAVFVDVR--GTEDTLRSVVKALGVPN-VEAC 341 (550)
T ss_pred HHHHHHHHhccCCCC--ceEEEEECCCCCCHHHHHHHHHhcC---C-ceEEEECCC--CHHHHHHHHHHHcCCCC-cccH
Confidence 556666666544322 2489999975 6777766665333 3 566665554 2221111 11234321 1111
Q ss_pred HHHHHHHHHHHHHHHhh-cC-----------CccC--hhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCc
Q 018577 153 NCLFHKIKGVLDEAIRL-EN-----------GCIT--HFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218 (353)
Q Consensus 153 ~~~~~~i~~~~~~~~~~-~~-----------~~~t--~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~ 218 (353)
..++..|.+.+.+.... +. ..++ |=|.+++ | -+...=.+|+|+.+-.. -.+|..- ++.|
T Consensus 342 ~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-a----~drr~ch~v~evplesl-t~~~~~l-prld 414 (550)
T PTZ00202 342 GDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-A----CDRRLCHVVIEVPLESL-TIANTLL-PRLD 414 (550)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-H----ccchhheeeeeehHhhc-chhcccC-ccce
Confidence 34555556555554433 11 1111 3333221 1 12333367889876654 2455443 3467
Q ss_pred EEEEccCChh
Q 018577 219 ASVITTIGEE 228 (353)
Q Consensus 219 vaVITnI~~D 228 (353)
...|-|.+..
T Consensus 415 f~~vp~fsr~ 424 (550)
T PTZ00202 415 FYLVPNFSRS 424 (550)
T ss_pred eEecCCCCHH
Confidence 7777777654
No 383
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=24.54 E-value=81 Score=29.56 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeE
Q 018577 88 GNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 88 g~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg 124 (353)
|.|..+ +-+.|. .||||+...+-.-+...|+++.
T Consensus 49 G~pann---vLL~G~rGtGKSSlVkall~~y~~~GLRlI 84 (249)
T PF05673_consen 49 GLPANN---VLLWGARGTGKSSLVKALLNEYADQGLRLI 84 (249)
T ss_pred CCCCcc---eEEecCCCCCHHHHHHHHHHHHhhcCceEE
Confidence 444443 444554 4899999998888888898763
No 384
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=24.44 E-value=1.1e+02 Score=30.72 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=27.0
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+|.|-|= .||||.+++|+.-|-+.|++++..
T Consensus 73 ~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ii 107 (398)
T COG1341 73 VGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAII 107 (398)
T ss_pred CcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEE
Confidence 355666663 799999999999999999988764
No 385
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=24.40 E-value=1.8e+02 Score=26.43 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=22.9
Q ss_pred CcEEEEcCCC--CchHHH-HHHHHHHHHcCCCeEE
Q 018577 94 FKTVHIAGTK--GKGSTA-AFLSSILRAEGYSVGC 125 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt-~ml~~IL~~~G~~vg~ 125 (353)
-.++.|+|.+ |||+.+ .++...++ .|.++..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~y 57 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSY 57 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEE
Confidence 3589999985 799995 67777665 4777654
No 386
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=24.19 E-value=6.3e+02 Score=24.04 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (353)
-++++.+.++.+|. -+++-|+|.+=......-+...|++. ..+..|.-+ . +. -+.+.+.+.
T Consensus 10 ~l~~l~~~~~~~g~----~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~-----------~--~~-p~~~~v~~~ 70 (332)
T cd07766 10 AIEKIGEEIKRGGF----DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGV-----------G--PN-PTFEEVKEA 70 (332)
T ss_pred HHHHHHHHHHhcCC----CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCc-----------C--CC-cCHHHHHHH
Confidence 36777777777652 26788887654335556677777776 666554321 1 22 233333333
Q ss_pred HHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccc----cCCcEEEEccCChh
Q 018577 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS----SGLAASVITTIGEE 228 (353)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~----~~p~vaVITnI~~D 228 (353)
++. +.+.++|+ |+=+|-|-..|....+.. .-|.++|=|..+-+
T Consensus 71 ~~~-----------------------------~~~~~~d~-IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt~~tg 117 (332)
T cd07766 71 VER-----------------------------ARAAEVDA-VIAVGGGSTLDTAKAVAALLNRGLPIIIVPTTAATG 117 (332)
T ss_pred HHH-----------------------------HHhcCcCE-EEEeCCchHHHHHHHHHHHhcCCCCEEEEeCCCchh
Confidence 321 33456665 556777777777654311 12667777777665
No 387
>PRK00023 cmk cytidylate kinase; Provisional
Probab=24.15 E-value=72 Score=29.06 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.7
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
.+|+|+|. .||||++.+|+.-|.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 68999997 699999999987773
No 388
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=24.10 E-value=2.4e+02 Score=27.08 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC-eEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS-VGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~-vg~~ 126 (353)
+.+.++++++.+|.+.. -++|...|+ |-++.++..+|+..||+ +-+|
T Consensus 253 ~~~el~~~~~~~gi~~~-~~iv~yC~s---G~~A~~~~~~L~~~G~~~v~~Y 300 (320)
T PLN02723 253 PAEELKKRFEQEGISLD-SPIVASCGT---GVTACILALGLHRLGKTDVPVY 300 (320)
T ss_pred CHHHHHHHHHhcCCCCC-CCEEEECCc---HHHHHHHHHHHHHcCCCCeeEe
Confidence 45778888888886544 467777666 55677888888999985 5554
No 389
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=23.84 E-value=58 Score=30.72 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHH
Q 018577 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSIL 116 (353)
Q Consensus 78 ~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL 116 (353)
+.+-++.+.|..|....=.||+.| .||.|.+++.+.|.
T Consensus 18 ~hi~ri~RvL~~~~Gh~LLvG~~G-sGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 18 EHIARISRVLSQPRGHALLVGVGG-SGRQSLARLAAFIC 55 (268)
T ss_dssp HHHHHHHHHHCSTTEEEEEECTTT-SCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCeEEecCCC-ccHHHHHHHHHHHh
Confidence 344555556667766666888888 79999999888876
No 390
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=23.82 E-value=94 Score=29.74 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=21.0
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHc--CCCeEEe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~--G~~vg~~ 126 (353)
+.|.|+|. .||||+...|...+... +.++...
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti 168 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII 168 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE
Confidence 45668875 68998888777666542 4555553
No 391
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=23.78 E-value=99 Score=29.21 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=29.7
Q ss_pred cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
-+|.+.| +.|||.+..-|..-|...|++|..|..|
T Consensus 57 vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~P 93 (264)
T TIGR03709 57 LLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAP 93 (264)
T ss_pred EEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCC
Confidence 4577888 7999999999999999999998776554
No 392
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=23.75 E-value=69 Score=29.02 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCe
Q 018577 85 DRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 85 ~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~v 123 (353)
..|..--..-..+.|+|-| ||||.-++|+.+++...=.|
T Consensus 19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v 59 (209)
T COG4133 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV 59 (209)
T ss_pred cceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE
Confidence 3343333345679999987 59999999999998765455
No 393
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.74 E-value=43 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHHH-cC
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILRA-EG 120 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~~-~G 120 (353)
..-++.+.-|-| |||||-+||-.+|.. .|
T Consensus 26 ~~G~i~GllG~NGAGKTTtfRmILglle~~~G 57 (300)
T COG4152 26 PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG 57 (300)
T ss_pred cCCeEEEeecCCCCCccchHHHHhccCCccCc
Confidence 455778888876 699999999999987 44
No 394
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.71 E-value=4.3e+02 Score=26.84 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=40.7
Q ss_pred CChHHHHHHHHHcCC--C-CCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 75 FDLGRMNRLMDRLGN--P-HSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~--p-~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+++|+-.+|+..|. | .....+..|+-..+...-+.-++..|+++|.++-++
T Consensus 314 iGveRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~ 368 (429)
T COG0124 314 IGVERLILALEEEGKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVD 368 (429)
T ss_pred hHHHHHHHHHHHcCCCCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEE
Confidence 789999999999983 2 334566666666665688899999999999988664
No 395
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=23.70 E-value=96 Score=32.47 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
-.-..++++.+-+.+-.+.-...||||| |||=|. +.+....+..+-+
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGS-GKTfT~---AnVI~~~~rPtLV 62 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGS-GKTFTM---ANVIAKVQRPTLV 62 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccC-CchhHH---HHHHHHhCCCeEE
Confidence 4567889998888765555567999997 999775 4455555655543
No 396
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=23.66 E-value=5.2e+02 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 109 AAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 109 t~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
..|++.+|+..|++|.. +|..++.+++.+.+
T Consensus 99 ~~~v~~~l~~~G~~vi~-----------------lG~~~p~~~l~~~~ 129 (201)
T cd02070 99 KNLVATMLEANGFEVID-----------------LGRDVPPEEFVEAV 129 (201)
T ss_pred HHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 58999999999999842 26777777766554
No 397
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=23.62 E-value=33 Score=31.63 Aligned_cols=49 Identities=29% Similarity=0.519 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
|..+++.+...+.| -+|.+.| +.|||.+...|..-|...|++|-.|..|
T Consensus 18 L~~lQ~~l~~~~~~----vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~p 68 (228)
T PF03976_consen 18 LAELQRRLREAGIP----VLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKP 68 (228)
T ss_dssp HHHHHHHHHHHHHE----EEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-
T ss_pred HHHHHHHHHHcCCc----EEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCC
Confidence 44455555555543 4577777 8999999999999999999999877665
No 398
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.57 E-value=35 Score=26.56 Aligned_cols=27 Identities=11% Similarity=0.347 Sum_probs=23.5
Q ss_pred eeeeeCCCccchhhhcccccccccccC
Q 018577 12 TTTFYSPTSRGYFKKFSIGSKSCFFST 38 (353)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (353)
+++..||.-||+|++|..+.+.=+|-+
T Consensus 5 v~~~vP~~lRG~Ltrwl~Ei~~GVyVg 31 (86)
T PF09707_consen 5 VLEAVPPRLRGFLTRWLLEIRPGVYVG 31 (86)
T ss_pred EEecCChhHhchhhheeEecCCCcEEc
Confidence 577889999999999999998877754
No 399
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.52 E-value=2e+02 Score=25.63 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 109 AAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 109 t~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
..|++.+|+..|++|.. +|..++.+++.+.+
T Consensus 101 ~~~v~~~l~~~G~~vi~-----------------LG~~vp~e~~v~~~ 131 (197)
T TIGR02370 101 KNIVVTMLRANGFDVID-----------------LGRDVPIDTVVEKV 131 (197)
T ss_pred HHHHHHHHHhCCcEEEE-----------------CCCCCCHHHHHHHH
Confidence 48999999999999853 27778877766554
No 400
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.27 E-value=68 Score=32.85 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+-+-||| |||-|-..|+.-|+.+|..|.+
T Consensus 24 IaGATGT-GKTvTLqvlAE~fS~~GVPVfl 52 (502)
T PF05872_consen 24 IAGATGT-GKTVTLQVLAEQFSDAGVPVFL 52 (502)
T ss_pred eeccCCC-CceehHHHHHHHhhhcCCcEEE
Confidence 5566666 9999999999999999988855
No 401
>PRK13947 shikimate kinase; Provisional
Probab=23.25 E-value=83 Score=26.64 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=18.7
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~ 122 (353)
-|.|.|. .||||++..|+..| |++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCC
Confidence 3666663 79999999999887 555
No 402
>PRK05569 flavodoxin; Provisional
Probab=23.21 E-value=2e+02 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEcCCCCch--HHHHHHHHHHHHcCCCe
Q 018577 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKG--STAAFLSSILRAEGYSV 123 (353)
Q Consensus 78 ~r~~~~l~~lg~p~~~~~vI~VtGTnGKt--STt~ml~~IL~~~G~~v 123 (353)
+.++.+++.+.....+-+.+++-||.|-+ .....+..+|+..|+++
T Consensus 67 ~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~ 114 (141)
T PRK05569 67 EEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNV 114 (141)
T ss_pred HHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeE
Confidence 56788888876444345777888887755 34556788999999876
No 403
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=23.11 E-value=5.1e+02 Score=25.20 Aligned_cols=45 Identities=22% Similarity=0.422 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++++...++.+|. -+++-|||.+=. ...-+...|++.|..+..|
T Consensus 10 ~l~~l~~~~~~~g~----~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~ 54 (367)
T cd08182 10 AIAKLPSLLKGLGG----KRVLLVTGPRSA--IASGLTDILKPLGTLVVVF 54 (367)
T ss_pred HHHHHHHHHHhcCC----CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEE
Confidence 47778788877763 267888775544 4455677788888766554
No 404
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=23.11 E-value=1e+02 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=19.6
Q ss_pred cEEEEcCCC--CchHHHHHHH--HHHHHcCC
Q 018577 95 KTVHIAGTK--GKGSTAAFLS--SILRAEGY 121 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~--~IL~~~G~ 121 (353)
+++.+||-| ||||...+|. .++.+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~ 59 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGL 59 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 689999987 5888777776 34455664
No 405
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=23.00 E-value=1.4e+02 Score=33.80 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=27.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.+.+|+=||+ ||||.-.+.+..|...|.++..
T Consensus 98 ~SFaiiAPTGv-GKTTfg~~~sl~~a~kgkr~yi 130 (1187)
T COG1110 98 KSFAIIAPTGV-GKTTFGLLMSLYLAKKGKRVYI 130 (1187)
T ss_pred CceEEEcCCCC-chhHHHHHHHHHHHhcCCeEEE
Confidence 35667888885 9999999999999999988754
No 406
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=22.97 E-value=4.5e+02 Score=23.91 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=56.9
Q ss_pred chhhhcccccccccccCCCCCccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcC
Q 018577 22 GYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAG 101 (353)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtG 101 (353)
.++++.. +++-|+. .+.+|.|..+..++.....-+... .-++..-++-++++||-|-....+|-.=
T Consensus 61 ~i~~~~~-g~~v~VL--asGDP~f~G~g~~l~~~~~~~~v~----------iIPgiSS~q~a~ARlg~~~~~~~~islH- 126 (210)
T COG2241 61 EILAERK-GRDVVVL--ASGDPLFSGVGRLLRRKFSCEEVE----------IIPGISSVQLAAARLGWPLQDTEVISLH- 126 (210)
T ss_pred HHHHHhC-CCCeEEE--ecCCcchhhhHHHHHHhcCccceE----------EecChhHHHHHHHHhCCChHHeEEEEec-
Confidence 3444433 7888987 667788888888775433211111 1257888999999999987776655443
Q ss_pred CCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 102 TKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 102 TnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
|+ -..++..++ ..|.++.+.+
T Consensus 127 --gr--~~~~l~~~~-~~~~~~vil~ 147 (210)
T COG2241 127 --GR--PVELLRPLL-ENGRRLVILT 147 (210)
T ss_pred --CC--CHHHHHHHH-hCCceEEEeC
Confidence 44 357888788 5677776643
No 407
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.93 E-value=3e+02 Score=26.66 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~ 155 (353)
-++++..+++.+| -+++-|+|.+-.-....-+...|+..+..... .+ |. -+.+.+.+.
T Consensus 11 ~l~~l~~~~~~~~-----~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~--------------~~--~~-p~~~~v~~~ 68 (347)
T cd08172 11 ALDELGELLKRFG-----KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLR--------------YD--GE-CSEENIERL 68 (347)
T ss_pred HHHHHHHHHHHhC-----CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEE--------------eC--CC-CCHHHHHHH
Confidence 3777888888774 26778887554433444444444434433222 23 34 333333333
Q ss_pred HHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccc--cCCcEEEEccCCh
Q 018577 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS--SGLAASVITTIGE 227 (353)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~--~~p~vaVITnI~~ 227 (353)
.+ .+.+.++| +|+=+|-|-..|....+.. ..|.++|=|..+-
T Consensus 69 ~~-----------------------------~~~~~~~D-~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~gt 112 (347)
T cd08172 69 AA-----------------------------QAKENGAD-VIIGIGGGKVLDTAKAVADRLGVPVITVPTLAAT 112 (347)
T ss_pred HH-----------------------------HHHhcCCC-EEEEeCCcHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 22 23456677 5667777777787765521 1255677766543
No 408
>PLN02318 phosphoribulokinase/uridine kinase
Probab=22.63 E-value=78 Score=33.70 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.1
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
...+|+|+|- .||||.+..|...+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 4579999996 589999999998873
No 409
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=22.58 E-value=72 Score=27.35 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=18.6
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.|-.||||++.-|+..| ++|.+.
T Consensus 8 kgG~GKSt~a~nLA~~l----~~vlli 30 (179)
T cd03110 8 KGGTGKTTVTAALAALL----KNVVLA 30 (179)
T ss_pred CCCCCHHHHHHHHHHHH----hCcEEE
Confidence 35579999999999999 577653
No 410
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=22.54 E-value=1.2e+02 Score=29.44 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=20.7
Q ss_pred CcEEEEcCCCC--chHHHHHHHHHHHH-cCCCeEEe
Q 018577 94 FKTVHIAGTKG--KGSTAAFLSSILRA-EGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGTnG--KtSTt~ml~~IL~~-~G~~vg~~ 126 (353)
...|.|+|..| ||||...+..-+.. .+.++...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 36799999755 99998766554432 23344443
No 411
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.53 E-value=1.4e+02 Score=31.97 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=30.6
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRA 118 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~ 118 (353)
++.++.+++..-.+...-+++.++|- .||||+..+++..+..
T Consensus 93 i~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 93 IEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44566666665555555567889997 5899999999987753
No 412
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=22.43 E-value=3.9e+02 Score=24.67 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCe---EEecCCcccccceeeee
Q 018577 79 RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV---GCYTSPHIKTIRERMNV 140 (353)
Q Consensus 79 r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~v---g~~tSp~l~~~~eri~i 140 (353)
.|.++++.+...+....++-|+-+| +-+|.+||+..|.+- -.||-|...+-+-++.+
T Consensus 75 gm~~~l~~l~~~~~~~~~~IiSDaN-----s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v 134 (234)
T PF06888_consen 75 GMKELLRFLAKNQRGFDLIIISDAN-----SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRV 134 (234)
T ss_pred cHHHHHHHHHhcCCCceEEEEeCCc-----HhHHHHHHHhCCCccccceEEeCCceecCCceEEE
Confidence 3667777775445577889999888 799999999999864 24777765554444444
No 413
>PRK06904 replicative DNA helicase; Validated
Probab=22.19 E-value=4.6e+02 Score=26.87 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=21.1
Q ss_pred cEEEEcC--CCCchHHHHHHH-HHHHHcCCCeEEe
Q 018577 95 KTVHIAG--TKGKGSTAAFLS-SILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG--TnGKtSTt~ml~-~IL~~~G~~vg~~ 126 (353)
..|.|+| ..|||+.+--++ .+....|.+|++|
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~f 256 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVF 256 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEE
Confidence 4566666 468988875444 3444568888776
No 414
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=22.08 E-value=1.1e+02 Score=25.63 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCCC--CCCCcEEEEcCCCCchHHHHH-HHHHHH
Q 018577 78 GRMNRLMDRLGNP--HSKFKTVHIAGTKGKGSTAAF-LSSILR 117 (353)
Q Consensus 78 ~r~~~~l~~lg~p--~~~~~vI~VtGTnGKtSTt~m-l~~IL~ 117 (353)
+-+.++++.+... ....-+.+.||| |||=+... +..+..
T Consensus 10 ~ai~~i~~~~~~~~~~~~~ll~~~tGs-GKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 10 EAIARIINSLENKKEERRVLLNAPTGS-GKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHTTSGCSEEEEEESTTS-SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCC-CcChhhhhhhhcccc
Confidence 3455555555443 334445666665 99998885 444444
No 415
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.00 E-value=7.6e+02 Score=24.28 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCc-hHHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGK-GSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGK-tSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++++...++.+| -+++-|+|.+=+ +.....+...|+..|..+..|
T Consensus 10 ~l~~l~~~~~~~g-----~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f 56 (386)
T cd08191 10 QRRQLPRLAARLG-----SRALIVTDERMAGTPVFAELVQALAAAGVEVEVF 56 (386)
T ss_pred HHHHHHHHHHHcC-----CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEE
Confidence 4677778888776 257778875433 355566777888889887665
No 416
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=21.67 E-value=95 Score=30.45 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCchHHHHHHHHHHH-HcCCCeEEecCCc
Q 018577 103 KGKGSTAAFLSSILR-AEGYSVGCYTSPH 130 (353)
Q Consensus 103 nGKtSTt~ml~~IL~-~~G~~vg~~tSp~ 130 (353)
.||||.+..|++.|. ..|+++.++..-.
T Consensus 10 aGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 10 AGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 699999999999987 6899998865543
No 417
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=21.47 E-value=3.1e+02 Score=26.67 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=27.7
Q ss_pred CCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 88 GNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 88 g~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
|.|.. .++-|.|. .||||.+.-+..-....|.++.++..+|
T Consensus 51 Glp~G--~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 51 GLPRG--RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CCcCC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 46543 57788884 7899997665555555687887765554
No 418
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=21.45 E-value=1e+02 Score=28.38 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHH
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
++++.+.|-....+.++|+|.|- .|||+.+..+.+=..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc
Confidence 34444554443356677777653 789999977775533
No 419
>PRK00131 aroK shikimate kinase; Reviewed
Probab=21.34 E-value=1.1e+02 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.2
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHH
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL 116 (353)
.+.|.++| ..||||++..|+..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35788887 479999999999988
No 420
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=21.29 E-value=80 Score=29.15 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.3
Q ss_pred EEEEcCC--CCchHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLS 113 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~ 113 (353)
+|+|||- .||+|++.++.
T Consensus 2 iI~i~G~~gsGKstva~~~~ 21 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFII 21 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 7999996 78999988874
No 421
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=21.25 E-value=67 Score=28.10 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHH
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRA 118 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~ 118 (353)
+..+|+..-. .-..|.|+|.+ ||||+...|...+..
T Consensus 14 ~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 14 QAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4444544322 23578888864 888888887777654
No 422
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=21.23 E-value=85 Score=31.45 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=18.4
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHH
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL 116 (353)
-.+.|+|+| +.||||.+..|+..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356789998 489999998777654
No 423
>PRK07413 hypothetical protein; Validated
Probab=21.15 E-value=1.1e+02 Score=30.49 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=25.9
Q ss_pred CCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577 88 GNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 88 g~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~ 122 (353)
|-|-..--.|+|==-||||.||+.+...|+++|.-
T Consensus 194 ~~~~~~~g~i~VYTG~GKGKTTAAlGlAlRA~G~G 228 (382)
T PRK07413 194 GVPFNSSGGIEIYTGEGKGKSTSALGKALQAIGRG 228 (382)
T ss_pred CcccCCCCeEEEEeCCCCCchHHHHHHHHHHhcCC
Confidence 33433344577755699999999999999998753
No 424
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=21.11 E-value=65 Score=27.57 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHHH
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILRA 118 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~~ 118 (353)
.+-.+++|.|.| ||||...+|..++..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345689999986 799998998887653
No 425
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=20.92 E-value=2.4e+02 Score=25.55 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 110 AFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 110 ~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
.|++.+|+.+|++|.. +|..++.+++.+.+
T Consensus 106 ~iv~~~l~~~G~~Vi~-----------------LG~~vp~e~~v~~~ 135 (213)
T cd02069 106 NLVGVILSNNGYEVID-----------------LGVMVPIEKILEAA 135 (213)
T ss_pred HHHHHHHHhCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 8999999999999854 27888887776554
No 426
>COG1084 Predicted GTPase [General function prediction only]
Probab=20.86 E-value=1.5e+02 Score=29.00 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=19.3
Q ss_pred CCCCcEEEEcC--CCCchHHHHHHHH
Q 018577 91 HSKFKTVHIAG--TKGKGSTAAFLSS 114 (353)
Q Consensus 91 ~~~~~vI~VtG--TnGKtSTt~ml~~ 114 (353)
+.+.+.|.|+| ..||||..+-|..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhc
Confidence 45789999999 6899997766553
No 427
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=20.77 E-value=3.4e+02 Score=22.52 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~ 122 (353)
++.+.+++++..+|-. .+-++|...++.+-+-.+..+.-+|+..|++
T Consensus 78 p~~~~~~~~~~~~GI~-~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~ 124 (138)
T cd01445 78 PSEAEFAAMFEAKGID-LDKHLIATDGDDLGGFTACHIALAARLCGHP 124 (138)
T ss_pred CCHHHHHHHHHHcCCC-CCCeEEEECCCCCcchHHHHHHHHHHHcCCC
Confidence 4567899999999964 3457777776533344566677789999976
No 428
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=20.68 E-value=1e+02 Score=28.35 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=24.7
Q ss_pred EEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|...| -.|||+++.-|..-|.-.|+++.+|
T Consensus 14 ~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vF 46 (222)
T PF01591_consen 14 VIVMVGLPARGKSYIARKLCRYLNWLGVKTKVF 46 (222)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCccee
Confidence 445555 4799999999999999999999887
No 429
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=20.65 E-value=1.5e+02 Score=25.31 Aligned_cols=31 Identities=23% Similarity=0.057 Sum_probs=20.1
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+.|+|. .|||+.+.-+..-....|.+|..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 556665 4799988755444445688876543
No 430
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.64 E-value=5.8e+02 Score=24.78 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=29.2
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCCCch-HHHHHHHHHHHHcCCCeEEe
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKG-STAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKt-STt~ml~~IL~~~G~~vg~~ 126 (353)
++++...++.+|. -+++-|+|.+=.. -...-+...|++.|..+..|
T Consensus 11 l~~l~~~l~~~~~----~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~ 57 (370)
T cd08551 11 IEKLGEEIKNLGG----RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIF 57 (370)
T ss_pred HHHHHHHHHHcCC----CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEE
Confidence 6777777777753 2667777754322 34456677778878776554
No 431
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=20.51 E-value=1.6e+02 Score=26.53 Aligned_cols=33 Identities=36% Similarity=0.399 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHc--CCCeEEe
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAE--GYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~--G~~vg~~ 126 (353)
.-.|.|==.||||-||+.+..+|++. |++|++.
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vv 62 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVV 62 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEE
Confidence 34466655699999999999999985 5677663
No 432
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=20.51 E-value=5e+02 Score=25.41 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCCCCCcEEEEcCC--CCchHHHHHHHHHHH-HcCCCeEEe
Q 018577 89 NPHSKFKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCY 126 (353)
Q Consensus 89 ~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~-~~G~~vg~~ 126 (353)
.|..++|+--|||= .|||| +|.+||. .+|.|+.+.
T Consensus 52 ~~~~rIPvtIITGyLGaGKtT---LLn~Il~~~hgKRIAVI 89 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTT---LLNYILTGQHGKRIAVI 89 (391)
T ss_pred CCCCccceEEEEecccCChHH---HHHHHHccCCCceEEEE
Confidence 34567899999995 56665 5566664 688888774
No 433
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=20.44 E-value=1.5e+02 Score=34.00 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=32.8
Q ss_pred CChH-HHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHc
Q 018577 75 FDLG-RMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (353)
Q Consensus 75 ~~l~-r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~ 119 (353)
.+.+ +++++.+.|.....+.++|+|.|- -||||.+..++.-+...
T Consensus 187 vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 187 VGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred cchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3443 556666666655667899999996 58999999998777653
No 434
>PRK03839 putative kinase; Provisional
Probab=20.42 E-value=97 Score=26.65 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=16.2
Q ss_pred EEEcCC--CCchHHHHHHHHHH
Q 018577 97 VHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL 116 (353)
|.|+|. .||||.+..|+.-|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 566664 69999999998887
No 435
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=20.26 E-value=86 Score=28.46 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHHH
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILRA 118 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~~ 118 (353)
++...++|-|-| ||+|.+.||+.+...
T Consensus 37 ~~~QTlaiIG~NGSGKSTLakMlaGmi~P 65 (267)
T COG4167 37 REGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred cCCcEEEEEccCCCcHhHHHHHHhcccCC
Confidence 345678888865 699999999888764
No 436
>PRK08760 replicative DNA helicase; Provisional
Probab=20.24 E-value=3.8e+02 Score=27.51 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=23.4
Q ss_pred CcEEEEcC--CCCchHHHHHHHH-HHHHcCCCeEEe
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSS-ILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~-IL~~~G~~vg~~ 126 (353)
-.+|.|+| ..|||+.+.-++. +....|.+|++|
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~f 264 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVF 264 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEE
Confidence 34566666 5799999877664 445668888776
No 437
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=20.23 E-value=1.4e+02 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHH-HcCCCeEEe
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILR-AEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~-~~G~~vg~~ 126 (353)
+-++|-||| |||.|+..|-.=+. ..|.++.+|
T Consensus 26 ~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ii~ 58 (229)
T PF01935_consen 26 IAIFGTTGS-GKSNTVKVLLEELLKKKGAKVIIF 58 (229)
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 345666665 99988876655555 777777654
No 438
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=20.20 E-value=1e+02 Score=28.78 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=64.8
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
++++..+++.++. -+++-|||.|=......-+...|+.+|+++-.+.- .+ +. .+.+.+.+..
T Consensus 7 ~~~l~~~l~~~~~----~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~-----------~~--~~-~~~~~~~~~~ 68 (250)
T PF13685_consen 7 LDKLPEILSELGL----KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEE-----------FV--GD-ADEDEVEKLV 68 (250)
T ss_dssp GGGHHHHHGGGT-----SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE------------EE------BHHHHHHHH
T ss_pred HHHHHHHHHhcCC----CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEec-----------CC--CC-CCHHHHHHHH
Confidence 6778888888854 28899999998888888999999999988753211 01 11 1222222211
Q ss_pred HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccccccccc--ccCCcEEEEccCChhhHh
Q 018577 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTA 231 (353)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~--~~~p~vaVITnI~~DHl~ 231 (353)
.+ +...++| +|+=+|.|-..|.+..+. .-.|-++|=|..+.|-..
T Consensus 69 ~~-----------------------------~~~~~~d-~ii~vGgG~i~D~~K~~A~~~~~p~isVPTa~S~DG~a 115 (250)
T PF13685_consen 69 EA-----------------------------LRPKDAD-LIIGVGGGTIIDIAKYAAFELGIPFISVPTAASHDGFA 115 (250)
T ss_dssp TT-----------------------------S--TT---EEEEEESHHHHHHHHHHHHHHT--EEEEES--SSGGGT
T ss_pred HH-----------------------------hcccCCC-EEEEeCCcHHHHHHHHHHHhcCCCEEEecccccccccc
Confidence 10 1234555 778899988889887542 223679999999988653
No 439
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=20.15 E-value=85 Score=33.88 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEEcCC--CCchHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+|+|+|+ .||||++..|+..|
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l 25 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYL 25 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 7999998 58999999999988
No 440
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=20.15 E-value=1.4e+02 Score=29.24 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=19.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEG 120 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G 120 (353)
+.+.|+|- -|||+++..+..-+...+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 44667774 589999999988887765
No 441
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=20.13 E-value=1.5e+02 Score=26.84 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=31.8
Q ss_pred CCCCCcEEEEcCCC-CchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 90 PHSKFKTVHIAGTK-GKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 90 p~~~~~vI~VtGTn-GKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+..+--.|-|+|-| |-||--.--...|+.+|.++.+..|-
T Consensus 63 ~~~~~~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SF 103 (200)
T PRK01641 63 PRYQGASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSF 103 (200)
T ss_pred cccCCCeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechH
Confidence 33334468899976 99999999999999999998776553
No 442
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=20.03 E-value=51 Score=31.36 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=20.4
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHc
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~ 119 (353)
.-.++.+-|+ .|||||-.||..++...
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 3445666666 58999999999998753
Done!