Query 018577
Match_columns 353
No_of_seqs 288 out of 2509
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 17:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrs_A Dihydrofolate:folylpoly 100.0 6.6E-58 2.3E-62 457.4 30.0 277 42-351 13-308 (437)
2 1jbw_A Folylpolyglutamate synt 100.0 3.5E-55 1.2E-59 436.5 34.5 290 43-351 1-304 (428)
3 2vos_A Folylpolyglutamate synt 100.0 1.9E-55 6.6E-60 445.1 31.6 290 44-351 26-342 (487)
4 1o5z_A Folylpolyglutamate synt 100.0 2.6E-55 8.9E-60 439.2 31.6 287 41-351 11-311 (442)
5 1w78_A FOLC bifunctional prote 100.0 7.4E-52 2.5E-56 411.7 28.9 277 44-351 12-293 (422)
6 1e8c_A UDP-N-acetylmuramoylala 100.0 1.8E-38 6.1E-43 321.8 20.0 220 87-351 101-345 (498)
7 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 6.8E-38 2.3E-42 320.1 20.4 229 78-351 129-381 (535)
8 1gg4_A UDP-N-acetylmuramoylala 100.0 7.4E-36 2.5E-40 299.1 14.5 221 75-351 78-320 (452)
9 2am1_A SP protein, UDP-N-acety 100.0 2.5E-36 8.6E-41 302.6 6.8 217 77-351 80-312 (454)
10 2x5o_A UDP-N-acetylmuramoylala 100.0 6.3E-34 2.2E-38 284.1 13.6 196 94-351 104-306 (439)
11 1j6u_A UDP-N-acetylmuramate-al 100.0 6.7E-33 2.3E-37 278.9 18.4 194 93-351 113-316 (469)
12 3lk7_A UDP-N-acetylmuramoylala 100.0 4.1E-33 1.4E-37 279.2 15.9 197 94-351 112-317 (451)
13 1p3d_A UDP-N-acetylmuramate--a 100.0 5.2E-32 1.8E-36 272.8 19.8 210 77-351 105-330 (475)
14 2f00_A UDP-N-acetylmuramate--L 100.0 4.6E-32 1.6E-36 274.3 18.5 210 77-351 106-331 (491)
15 3eag_A UDP-N-acetylmuramate:L- 100.0 5.4E-32 1.8E-36 260.3 16.4 201 93-343 107-323 (326)
16 4hv4_A UDP-N-acetylmuramate--L 100.0 1.1E-31 3.6E-36 271.8 17.1 197 94-351 122-334 (494)
17 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.9E-31 6.5E-36 271.8 14.0 215 93-351 121-381 (524)
18 2obn_A Hypothetical protein; s 95.8 0.018 6.2E-07 55.1 7.7 35 94-128 152-189 (349)
19 4dzz_A Plasmid partitioning pr 95.2 0.067 2.3E-06 45.8 8.5 32 95-126 2-36 (206)
20 3fwy_A Light-independent proto 94.2 0.043 1.5E-06 51.6 4.9 34 93-126 47-82 (314)
21 1hyq_A MIND, cell division inh 93.8 0.16 5.3E-06 45.5 7.7 32 95-126 3-37 (263)
22 3kl4_A SRP54, signal recogniti 93.4 0.53 1.8E-05 46.2 11.2 34 94-127 97-132 (433)
23 3of5_A Dethiobiotin synthetase 93.3 0.075 2.6E-06 47.5 4.7 36 92-127 2-40 (228)
24 3dm5_A SRP54, signal recogniti 93.1 0.9 3.1E-05 44.7 12.4 34 94-127 100-135 (443)
25 4a0g_A Adenosylmethionine-8-am 92.4 0.51 1.8E-05 50.1 10.3 35 93-127 33-75 (831)
26 1byi_A Dethiobiotin synthase; 92.3 0.1 3.6E-06 45.4 4.1 32 95-126 2-36 (224)
27 1xjc_A MOBB protein homolog; s 91.9 0.18 6.3E-06 43.0 5.0 35 93-127 3-39 (169)
28 2g0t_A Conserved hypothetical 91.4 0.3 1E-05 46.6 6.4 37 93-129 168-207 (350)
29 3fgn_A Dethiobiotin synthetase 91.1 0.2 7E-06 45.5 4.7 36 92-127 24-62 (251)
30 3bfv_A CAPA1, CAPB2, membrane 90.7 0.5 1.7E-05 43.1 7.1 37 90-126 78-117 (271)
31 3qxc_A Dethiobiotin synthetase 90.6 0.23 7.8E-06 44.9 4.6 35 93-127 20-57 (242)
32 3ez2_A Plasmid partition prote 90.3 0.45 1.5E-05 45.6 6.7 51 76-126 85-149 (398)
33 1g3q_A MIND ATPase, cell divis 90.0 0.29 9.8E-06 42.9 4.6 32 95-126 3-37 (237)
34 3cio_A ETK, tyrosine-protein k 89.8 0.34 1.2E-05 44.9 5.2 36 91-126 101-139 (299)
35 3ea0_A ATPase, para family; al 89.5 0.29 9.8E-06 43.1 4.2 34 93-126 3-40 (245)
36 1wcv_1 SOJ, segregation protei 89.5 0.31 1.1E-05 43.6 4.5 34 93-126 5-41 (257)
37 1s1m_A CTP synthase; CTP synth 89.2 1.5 5.2E-05 44.2 9.6 34 95-128 4-41 (545)
38 1vco_A CTP synthetase; tetrame 88.5 2 6.7E-05 43.4 10.0 34 95-128 13-50 (550)
39 3la6_A Tyrosine-protein kinase 88.2 0.56 1.9E-05 43.2 5.4 36 91-126 89-127 (286)
40 3q9l_A Septum site-determining 88.1 0.47 1.6E-05 42.0 4.6 32 95-126 3-37 (260)
41 2xj4_A MIPZ; replication, cell 87.8 0.49 1.7E-05 43.2 4.7 32 95-126 5-39 (286)
42 3k9g_A PF-32 protein; ssgcid, 87.6 0.45 1.5E-05 42.7 4.3 34 92-126 25-61 (267)
43 2ph1_A Nucleotide-binding prot 87.5 0.67 2.3E-05 41.6 5.3 33 94-126 18-53 (262)
44 3c8u_A Fructokinase; YP_612366 87.3 1.5 5E-05 37.8 7.3 46 80-125 8-55 (208)
45 3ez9_A Para; DNA binding, wing 87.3 0.71 2.4E-05 44.4 5.7 52 75-126 87-152 (403)
46 2oze_A ORF delta'; para, walke 87.2 1 3.5E-05 40.9 6.5 44 77-126 23-71 (298)
47 1rz3_A Hypothetical protein rb 85.7 1.2 4.1E-05 38.2 5.8 47 80-126 7-56 (201)
48 2px0_A Flagellar biosynthesis 85.5 0.62 2.1E-05 43.2 4.1 35 93-127 104-141 (296)
49 1zu4_A FTSY; GTPase, signal re 85.4 0.7 2.4E-05 43.3 4.4 34 93-126 104-139 (320)
50 3end_A Light-independent proto 85.0 0.91 3.1E-05 41.6 4.9 35 92-126 39-75 (307)
51 3fkq_A NTRC-like two-domain pr 84.9 0.93 3.2E-05 43.1 5.1 36 91-126 140-178 (373)
52 3cwq_A Para family chromosome 84.4 0.91 3.1E-05 39.4 4.4 30 96-126 2-34 (209)
53 1vma_A Cell division protein F 83.5 1.4 4.7E-05 41.1 5.4 34 93-126 103-138 (306)
54 3p32_A Probable GTPase RV1496/ 82.1 1.8 6.3E-05 40.8 5.9 47 80-126 65-113 (355)
55 3zq6_A Putative arsenical pump 81.8 1.4 4.6E-05 41.1 4.8 35 93-127 12-49 (324)
56 1uf9_A TT1252 protein; P-loop, 80.0 0.98 3.3E-05 38.2 2.9 33 87-123 1-35 (203)
57 3pg5_A Uncharacterized protein 79.5 1.2 4.2E-05 42.1 3.7 32 95-126 2-36 (361)
58 2z0h_A DTMP kinase, thymidylat 79.5 2.3 7.7E-05 35.7 5.0 30 96-125 2-33 (197)
59 1np6_A Molybdopterin-guanine d 79.4 2.3 7.8E-05 36.1 5.0 34 94-127 6-41 (174)
60 1a7j_A Phosphoribulokinase; tr 79.0 1.8 6.1E-05 39.8 4.5 35 93-127 4-40 (290)
61 2f1r_A Molybdopterin-guanine d 78.4 1.6 5.6E-05 36.9 3.7 32 95-126 3-36 (171)
62 1odf_A YGR205W, hypothetical 3 78.4 2.4 8.2E-05 39.0 5.2 29 92-120 29-59 (290)
63 1cp2_A CP2, nitrogenase iron p 78.1 1.5 5E-05 39.1 3.6 32 95-126 2-35 (269)
64 3e70_C DPA, signal recognition 77.2 4 0.00014 38.3 6.4 34 93-126 128-163 (328)
65 3ug7_A Arsenical pump-driving 77.0 2.7 9.1E-05 39.7 5.1 35 93-127 24-61 (349)
66 2afh_E Nitrogenase iron protei 76.7 1.8 6.2E-05 39.2 3.8 32 95-126 3-36 (289)
67 2woo_A ATPase GET3; tail-ancho 76.7 1.6 5.6E-05 40.7 3.5 32 95-126 19-53 (329)
68 2p67_A LAO/AO transport system 75.2 3.1 0.00011 39.0 5.1 46 81-126 43-90 (341)
69 1ihu_A Arsenical pump-driving 75.2 7.6 0.00026 39.1 8.3 27 100-126 335-361 (589)
70 2wwf_A Thymidilate kinase, put 75.0 3.5 0.00012 35.0 5.0 34 92-125 8-43 (212)
71 2i3b_A HCR-ntpase, human cance 74.9 3.7 0.00012 35.2 5.1 30 96-125 3-34 (189)
72 2vo1_A CTP synthase 1; pyrimid 74.8 2.8 9.7E-05 38.4 4.4 34 92-125 21-58 (295)
73 1nn5_A Similar to deoxythymidy 74.6 3.7 0.00013 34.8 5.0 34 93-126 8-43 (215)
74 2yvu_A Probable adenylyl-sulfa 74.5 4.2 0.00014 33.9 5.3 34 93-126 12-47 (186)
75 2xxa_A Signal recognition part 74.3 3.7 0.00013 40.1 5.5 34 93-126 99-135 (433)
76 2c5m_A CTP synthase; cytidine 74.3 2.6 8.8E-05 38.4 3.9 33 93-125 22-58 (294)
77 2jeo_A Uridine-cytidine kinase 74.2 2.1 7.2E-05 37.8 3.5 34 83-116 14-49 (245)
78 3igf_A ALL4481 protein; two-do 74.0 7.1 0.00024 37.3 7.3 28 101-128 11-38 (374)
79 1j8m_F SRP54, signal recogniti 73.2 6.6 0.00023 36.1 6.7 33 94-126 98-132 (297)
80 2pbr_A DTMP kinase, thymidylat 71.8 3.5 0.00012 34.2 4.1 30 96-125 2-33 (195)
81 3kjh_A CO dehydrogenase/acetyl 71.7 1.4 4.9E-05 38.3 1.7 27 100-126 8-34 (254)
82 3b9q_A Chloroplast SRP recepto 71.2 6 0.0002 36.5 5.9 32 94-125 100-133 (302)
83 3io3_A DEHA2D07832P; chaperone 69.9 4.1 0.00014 38.5 4.6 34 95-128 19-56 (348)
84 2pez_A Bifunctional 3'-phospho 69.7 5.7 0.0002 32.8 5.0 32 94-125 5-38 (179)
85 3iqw_A Tail-anchored protein t 69.5 2.8 9.5E-05 39.4 3.3 28 100-127 24-51 (334)
86 2j37_W Signal recognition part 69.3 5.6 0.00019 39.7 5.5 35 93-127 100-136 (504)
87 3hjn_A DTMP kinase, thymidylat 68.7 3.3 0.00011 35.6 3.4 33 97-129 3-37 (197)
88 1nks_A Adenylate kinase; therm 67.2 5 0.00017 33.2 4.1 32 95-126 2-35 (194)
89 2og2_A Putative signal recogni 66.9 7.9 0.00027 36.8 5.8 32 94-125 157-190 (359)
90 2qm8_A GTPase/ATPase; G protei 66.9 7.4 0.00025 36.4 5.6 46 81-126 42-89 (337)
91 2woj_A ATPase GET3; tail-ancho 66.4 5.9 0.0002 37.4 4.9 32 95-126 18-54 (354)
92 2kjq_A DNAA-related protein; s 66.4 15 0.00053 29.7 6.9 44 81-126 25-70 (149)
93 3upu_A ATP-dependent DNA helic 65.7 4.2 0.00014 39.7 3.8 50 79-129 33-82 (459)
94 3pzx_A Formate--tetrahydrofola 64.4 8.8 0.0003 38.2 5.6 43 83-126 47-95 (557)
95 2v3c_C SRP54, signal recogniti 64.2 6.3 0.00022 38.4 4.7 34 94-127 99-134 (432)
96 3tqc_A Pantothenate kinase; bi 63.3 11 0.00037 35.2 6.0 41 86-126 83-128 (321)
97 2if2_A Dephospho-COA kinase; a 63.2 4 0.00014 34.5 2.7 25 95-123 2-28 (204)
98 1ihu_A Arsenical pump-driving 62.7 7.1 0.00024 39.3 4.9 33 94-126 8-42 (589)
99 1uj2_A Uridine-cytidine kinase 62.6 4.1 0.00014 36.1 2.8 26 93-118 21-48 (252)
100 1zuh_A Shikimate kinase; alpha 62.2 5.2 0.00018 32.7 3.2 26 91-116 4-31 (168)
101 2yhs_A FTSY, cell division pro 61.2 9.9 0.00034 37.9 5.5 33 93-125 292-326 (503)
102 1nij_A Hypothetical protein YJ 61.2 8.9 0.00031 35.4 5.0 32 93-126 3-36 (318)
103 3asz_A Uridine kinase; cytidin 60.8 4.8 0.00016 34.2 2.8 26 93-118 5-32 (211)
104 4edh_A DTMP kinase, thymidylat 60.6 10 0.00035 32.9 5.0 36 94-129 6-43 (213)
105 1ls1_A Signal recognition part 60.5 8.6 0.00029 35.2 4.7 33 93-125 97-131 (295)
106 3lv8_A DTMP kinase, thymidylat 60.1 9.9 0.00034 33.8 4.9 33 93-125 26-60 (236)
107 3nva_A CTP synthase; rossman f 59.5 8.9 0.0003 38.4 4.8 32 94-125 3-38 (535)
108 1pjq_A CYSG, siroheme synthase 58.3 5.9 0.0002 38.8 3.3 23 96-119 123-146 (457)
109 1gtv_A TMK, thymidylate kinase 57.9 3.3 0.00011 35.2 1.2 34 96-129 2-37 (214)
110 3a4m_A L-seryl-tRNA(SEC) kinas 57.8 12 0.00042 33.1 5.2 32 94-125 4-37 (260)
111 3ec2_A DNA replication protein 57.3 14 0.00048 30.4 5.1 43 80-124 26-71 (180)
112 1rj9_A FTSY, signal recognitio 57.3 14 0.00048 34.0 5.5 34 93-126 101-136 (304)
113 4tmk_A Protein (thymidylate ki 56.9 13 0.00045 32.3 5.1 35 95-129 4-41 (213)
114 2plr_A DTMP kinase, probable t 56.2 11 0.00037 31.6 4.3 29 95-124 5-35 (213)
115 1xx6_A Thymidine kinase; NESG, 56.0 17 0.00057 31.1 5.5 36 92-127 6-43 (191)
116 3aez_A Pantothenate kinase; tr 54.9 8.7 0.0003 35.6 3.7 34 92-125 88-125 (312)
117 2grj_A Dephospho-COA kinase; T 54.8 7.4 0.00025 33.3 3.0 29 92-123 10-40 (192)
118 2w0m_A SSO2452; RECA, SSPF, un 54.2 14 0.00049 31.2 4.8 33 94-126 23-57 (235)
119 1jjv_A Dephospho-COA kinase; P 53.9 7.3 0.00025 32.9 2.8 25 95-123 3-29 (206)
120 2ffh_A Protein (FFH); SRP54, s 53.7 12 0.00042 36.3 4.7 33 94-126 98-132 (425)
121 3ake_A Cytidylate kinase; CMP 53.1 9 0.00031 32.1 3.2 22 95-116 3-26 (208)
122 1sq5_A Pantothenate kinase; P- 53.0 8.2 0.00028 35.4 3.2 26 92-117 78-105 (308)
123 3tr0_A Guanylate kinase, GMP k 53.0 8.3 0.00029 32.3 3.0 23 94-116 7-31 (205)
124 3a00_A Guanylate kinase, GMP k 52.9 5 0.00017 33.7 1.5 24 95-118 2-27 (186)
125 4i1u_A Dephospho-COA kinase; s 52.7 9.8 0.00033 33.3 3.4 29 91-123 6-36 (210)
126 3uie_A Adenylyl-sulfate kinase 52.4 18 0.0006 30.5 5.0 31 93-123 24-56 (200)
127 2b8t_A Thymidine kinase; deoxy 51.7 16 0.00056 32.1 4.8 36 92-127 10-47 (223)
128 1m7g_A Adenylylsulfate kinase; 50.6 17 0.00059 30.8 4.7 33 94-126 25-60 (211)
129 3kb2_A SPBC2 prophage-derived 50.5 11 0.00037 30.4 3.2 22 95-116 2-25 (173)
130 2gks_A Bifunctional SAT/APS ki 50.4 36 0.0012 34.0 7.6 47 79-125 356-405 (546)
131 1kht_A Adenylate kinase; phosp 50.1 17 0.00057 29.8 4.4 28 95-122 4-33 (192)
132 1jwy_B Dynamin A GTPase domain 50.0 9.8 0.00033 34.4 3.2 37 77-113 7-45 (315)
133 3do6_A Formate--tetrahydrofola 49.9 17 0.00059 36.0 4.9 46 75-125 29-80 (543)
134 1yrb_A ATP(GTP)binding protein 49.5 17 0.00058 31.7 4.6 32 94-126 14-47 (262)
135 4eun_A Thermoresistant glucoki 49.4 12 0.00043 31.4 3.6 24 93-116 28-53 (200)
136 2r8r_A Sensor protein; KDPD, P 49.0 18 0.00061 32.1 4.5 33 97-129 11-44 (228)
137 3ld9_A DTMP kinase, thymidylat 48.2 17 0.0006 31.9 4.4 33 93-125 20-55 (223)
138 3v9p_A DTMP kinase, thymidylat 47.8 23 0.00078 31.1 5.1 37 93-129 24-66 (227)
139 3syl_A Protein CBBX; photosynt 47.2 18 0.00062 32.4 4.5 26 96-121 69-96 (309)
140 4hlc_A DTMP kinase, thymidylat 47.1 9.3 0.00032 33.0 2.4 34 95-129 3-38 (205)
141 1g8f_A Sulfate adenylyltransfe 47.0 32 0.0011 34.2 6.5 47 74-120 374-424 (511)
142 4ehx_A Tetraacyldisaccharide 4 46.8 36 0.0012 31.5 6.5 45 80-126 19-70 (315)
143 1ye8_A Protein THEP1, hypothet 45.8 14 0.00048 31.0 3.3 22 96-117 2-25 (178)
144 3czq_A Putative polyphosphate 45.8 11 0.00038 34.9 2.8 50 77-130 73-124 (304)
145 1ukz_A Uridylate kinase; trans 45.1 13 0.00045 31.1 3.0 25 92-116 13-39 (203)
146 1knq_A Gluconate kinase; ALFA/ 44.5 19 0.00063 29.4 3.8 25 92-116 6-32 (175)
147 3lnc_A Guanylate kinase, GMP k 44.4 11 0.00039 32.5 2.5 25 93-117 26-53 (231)
148 1g5t_A COB(I)alamin adenosyltr 44.3 21 0.0007 30.9 4.1 32 95-126 29-62 (196)
149 2www_A Methylmalonic aciduria 43.9 36 0.0012 31.7 6.2 35 93-127 73-109 (349)
150 1cke_A CK, MSSA, protein (cyti 43.9 15 0.00052 31.2 3.3 22 95-116 6-29 (227)
151 2j9r_A Thymidine kinase; TK1, 43.8 37 0.0013 29.7 5.8 38 90-127 24-63 (214)
152 2j41_A Guanylate kinase; GMP, 43.8 11 0.00038 31.5 2.4 23 94-116 6-30 (207)
153 1y63_A LMAJ004144AAA protein; 43.7 17 0.00059 30.1 3.5 23 93-115 9-33 (184)
154 1kag_A SKI, shikimate kinase I 43.2 12 0.0004 30.5 2.3 23 95-117 5-29 (173)
155 1cr0_A DNA primase/helicase; R 42.7 25 0.00087 31.5 4.7 38 87-126 30-70 (296)
156 2iyv_A Shikimate kinase, SK; t 42.4 14 0.00047 30.5 2.6 22 95-116 3-26 (184)
157 3lw7_A Adenylate kinase relate 41.7 18 0.00061 28.9 3.2 25 95-123 2-28 (179)
158 4eaq_A DTMP kinase, thymidylat 41.5 27 0.00091 30.4 4.5 32 93-125 25-58 (229)
159 3vaa_A Shikimate kinase, SK; s 41.3 20 0.00067 30.2 3.5 24 93-116 24-49 (199)
160 3tlx_A Adenylate kinase 2; str 40.6 16 0.00056 32.0 3.0 37 80-116 15-53 (243)
161 1e6c_A Shikimate kinase; phosp 39.9 18 0.0006 29.3 2.9 22 95-116 3-26 (173)
162 2v54_A DTMP kinase, thymidylat 39.5 20 0.00069 29.8 3.3 29 94-124 4-34 (204)
163 1m8p_A Sulfate adenylyltransfe 39.3 59 0.002 32.6 7.3 32 94-125 396-430 (573)
164 2c95_A Adenylate kinase 1; tra 39.3 19 0.00065 29.7 3.1 23 94-116 9-33 (196)
165 1q3t_A Cytidylate kinase; nucl 39.2 22 0.00077 30.7 3.7 24 93-116 15-40 (236)
166 2vli_A Antibiotic resistance p 38.8 15 0.00053 29.9 2.4 23 94-116 5-29 (183)
167 2eyu_A Twitching motility prot 38.8 37 0.0013 30.3 5.1 35 83-119 16-52 (261)
168 3lfu_A DNA helicase II; SF1 he 38.8 21 0.00073 35.8 3.9 31 89-120 20-51 (647)
169 2f6r_A COA synthase, bifunctio 38.2 17 0.00059 32.7 2.8 27 93-123 74-102 (281)
170 2orw_A Thymidine kinase; TMTK, 38.1 32 0.0011 28.9 4.3 33 95-127 4-38 (184)
171 1qf9_A UMP/CMP kinase, protein 38.0 22 0.00075 29.0 3.3 23 94-116 6-30 (194)
172 1vht_A Dephospho-COA kinase; s 37.8 24 0.00081 30.0 3.5 25 95-123 5-31 (218)
173 2cdn_A Adenylate kinase; phosp 37.3 29 0.00099 29.0 4.0 22 95-116 21-44 (201)
174 1zak_A Adenylate kinase; ATP:A 37.2 17 0.00057 31.1 2.4 22 96-117 7-30 (222)
175 2pt5_A Shikimate kinase, SK; a 37.1 22 0.00076 28.5 3.1 21 96-116 2-24 (168)
176 2bwj_A Adenylate kinase 5; pho 36.7 20 0.00067 29.7 2.7 22 95-116 13-36 (199)
177 3tau_A Guanylate kinase, GMP k 36.6 24 0.00082 29.9 3.4 25 93-117 7-33 (208)
178 2w58_A DNAI, primosome compone 36.5 65 0.0022 26.6 6.1 31 95-125 55-87 (202)
179 2jaq_A Deoxyguanosine kinase; 36.3 24 0.00081 29.2 3.2 22 96-117 2-25 (205)
180 1tev_A UMP-CMP kinase; ploop, 36.2 24 0.00082 28.9 3.2 22 95-116 4-27 (196)
181 2qby_A CDC6 homolog 1, cell di 34.5 28 0.00097 31.7 3.7 31 94-124 45-80 (386)
182 2ewv_A Twitching motility prot 34.0 53 0.0018 30.9 5.6 27 93-119 135-163 (372)
183 3t61_A Gluconokinase; PSI-biol 33.7 28 0.00097 29.0 3.3 23 94-116 18-42 (202)
184 3jvv_A Twitching mobility prot 33.4 38 0.0013 31.8 4.4 31 95-125 124-157 (356)
185 1znw_A Guanylate kinase, GMP k 32.7 25 0.00086 29.7 2.8 25 93-117 19-45 (207)
186 3bfj_A 1,3-propanediol oxidore 32.7 1.3E+02 0.0045 28.1 8.2 46 77-126 21-69 (387)
187 2qby_B CDC6 homolog 3, cell di 32.4 49 0.0017 30.4 5.0 42 77-119 29-72 (384)
188 2qt1_A Nicotinamide riboside k 31.6 24 0.00081 29.7 2.5 24 93-116 20-45 (207)
189 2jtq_A Phage shock protein E; 31.3 1.2E+02 0.0042 21.2 6.2 45 75-123 24-68 (85)
190 3cm0_A Adenylate kinase; ATP-b 31.1 31 0.0011 28.2 3.1 22 95-116 5-28 (186)
191 2v1u_A Cell division control p 30.9 29 0.001 31.7 3.2 26 94-119 44-71 (387)
192 1dek_A Deoxynucleoside monopho 30.8 28 0.00096 30.9 2.9 26 95-123 2-29 (241)
193 3n70_A Transport activator; si 30.7 34 0.0012 27.1 3.2 43 77-122 10-54 (145)
194 3czp_A Putative polyphosphate 30.2 34 0.0012 33.9 3.7 50 77-130 29-81 (500)
195 3iij_A Coilin-interacting nucl 30.1 38 0.0013 27.5 3.5 24 93-116 10-35 (180)
196 1aky_A Adenylate kinase; ATP:A 29.9 38 0.0013 28.7 3.6 23 94-116 4-28 (220)
197 1via_A Shikimate kinase; struc 29.8 31 0.001 28.1 2.8 22 95-116 5-28 (175)
198 1lvg_A Guanylate kinase, GMP k 29.8 31 0.001 29.1 2.9 23 95-117 5-29 (198)
199 2bdt_A BH3686; alpha-beta prot 29.4 30 0.001 28.5 2.7 20 95-114 3-24 (189)
200 3ixl_A Amdase, arylmalonate de 29.2 1.9E+02 0.0065 25.2 8.1 46 78-129 106-151 (240)
201 1qhx_A CPT, protein (chloramph 29.0 30 0.001 28.0 2.6 23 95-117 4-28 (178)
202 1htw_A HI0065; nucleotide-bind 28.9 35 0.0012 28.0 3.0 25 92-116 31-57 (158)
203 1ccw_A Protein (glutamate muta 28.6 76 0.0026 25.2 4.9 43 97-156 8-50 (137)
204 3rhf_A Putative polyphosphate 27.9 33 0.0011 31.5 2.9 53 77-129 57-112 (289)
205 2v9p_A Replication protein E1; 27.9 46 0.0016 30.6 3.9 42 82-126 114-157 (305)
206 2rhm_A Putative kinase; P-loop 27.9 36 0.0012 27.8 2.9 23 94-116 5-29 (193)
207 3bh0_A DNAB-like replicative h 27.6 1.3E+02 0.0044 27.3 6.9 46 77-126 55-102 (315)
208 1x6v_B Bifunctional 3'-phospho 27.6 68 0.0023 32.7 5.4 41 85-125 42-85 (630)
209 3bgw_A DNAB-like replicative h 27.5 1.2E+02 0.0041 29.2 7.0 47 77-127 184-232 (444)
210 1p9r_A General secretion pathw 27.2 55 0.0019 31.5 4.5 37 93-129 166-204 (418)
211 2yxb_A Coenzyme B12-dependent 26.9 1.1E+02 0.0037 25.1 5.7 43 97-156 23-65 (161)
212 3bos_A Putative DNA replicatio 26.9 1.2E+02 0.0041 25.2 6.3 34 94-127 52-87 (242)
213 1z6g_A Guanylate kinase; struc 26.6 32 0.0011 29.5 2.4 24 93-116 22-47 (218)
214 2bbw_A Adenylate kinase 4, AK4 26.6 47 0.0016 28.8 3.6 39 75-116 11-51 (246)
215 4a1f_A DNAB helicase, replicat 26.4 1.4E+02 0.0047 27.8 7.0 47 77-127 33-81 (338)
216 3trf_A Shikimate kinase, SK; a 26.1 47 0.0016 27.0 3.4 23 94-116 5-29 (185)
217 1l8q_A Chromosomal replication 24.8 1.3E+02 0.0045 26.9 6.5 41 85-125 28-70 (324)
218 2vp4_A Deoxynucleoside kinase; 24.6 40 0.0014 29.0 2.7 24 92-115 18-43 (230)
219 2aka_B Dynamin-1; fusion prote 24.4 57 0.0019 28.8 3.8 35 78-112 9-46 (299)
220 4e22_A Cytidylate kinase; P-lo 23.9 47 0.0016 29.1 3.1 24 93-116 26-51 (252)
221 4e5v_A Putative THUA-like prot 23.9 3.8E+02 0.013 24.0 9.3 38 92-129 3-43 (281)
222 2p5t_B PEZT; postsegregational 23.8 79 0.0027 27.5 4.6 26 92-117 30-57 (253)
223 1kgd_A CASK, peripheral plasma 23.7 41 0.0014 27.6 2.5 24 94-117 5-30 (180)
224 3fb4_A Adenylate kinase; psych 23.1 52 0.0018 27.6 3.1 21 96-116 2-24 (216)
225 2bjv_A PSP operon transcriptio 23.0 56 0.0019 28.4 3.4 43 77-122 15-59 (265)
226 3h1t_A Type I site-specific re 22.9 70 0.0024 31.6 4.5 44 76-120 183-226 (590)
227 2orv_A Thymidine kinase; TP4A 22.5 93 0.0032 27.6 4.7 34 94-127 19-54 (234)
228 3co5_A Putative two-component 22.5 42 0.0014 26.5 2.2 36 77-115 13-50 (143)
229 1ly1_A Polynucleotide kinase; 22.3 50 0.0017 26.5 2.7 20 95-114 3-24 (181)
230 3nwj_A ATSK2; P loop, shikimat 22.2 32 0.0011 30.6 1.6 23 94-116 48-72 (250)
231 4ag6_A VIRB4 ATPase, type IV s 21.7 58 0.002 30.5 3.4 30 96-126 40-69 (392)
232 3hbx_A GAD 1, glutamate decarb 21.6 3.7E+02 0.013 25.8 9.4 89 79-168 353-446 (502)
233 1jbk_A CLPB protein; beta barr 21.3 2.1E+02 0.0073 22.3 6.5 39 78-118 29-69 (195)
234 3kta_A Chromosome segregation 21.2 44 0.0015 27.2 2.1 22 96-117 28-51 (182)
235 2ehv_A Hypothetical protein PH 21.2 99 0.0034 26.1 4.6 33 93-125 29-64 (251)
236 2zr9_A Protein RECA, recombina 21.0 96 0.0033 28.8 4.7 37 93-129 60-98 (349)
237 3flh_A Uncharacterized protein 20.7 1.4E+02 0.0049 22.7 5.0 47 75-125 56-102 (124)
238 2e2z_A TIM15; protein import, 20.4 33 0.0011 26.4 1.0 35 227-261 51-89 (100)
239 2qgz_A Helicase loader, putati 20.3 1.7E+02 0.0057 26.5 6.1 33 95-127 153-188 (308)
240 3e2i_A Thymidine kinase; Zn-bi 20.3 84 0.0029 27.5 3.9 37 92-128 26-64 (219)
241 1vlj_A NADH-dependent butanol 20.3 2.1E+02 0.0072 27.0 7.1 47 76-126 30-78 (407)
No 1
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=6.6e-58 Score=457.41 Aligned_cols=277 Identities=26% Similarity=0.328 Sum_probs=221.4
Q ss_pred CccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCC
Q 018577 42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGY 121 (353)
Q Consensus 42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~ 121 (353)
..+|++|++||++++.+ ++ +++|+||+++|++||+|+.++++||||||||||||++||++||+++||
T Consensus 13 ~~~~~~~l~~l~~~~~~---~~----------~~gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~ 79 (437)
T 3nrs_A 13 TSPLAAWLCYLEHLHSQ---PI----------ELGLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGL 79 (437)
T ss_dssp TSCHHHHHHHHHTC--------------------CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHhcCCC---CC----------CCCHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCC
Confidence 45799999999998865 33 378999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeec
Q 018577 122 SVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAG 201 (353)
Q Consensus 122 ~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG 201 (353)
+||+|||||+.+|||||++| |.+|+++++.++++++++.. +..++|+||++|++||.+|.+.++|++|+|+|
T Consensus 80 ~vg~~tSphl~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvG 151 (437)
T 3nrs_A 80 RVGVYSSPHLLRYTERVRIQ--GQELSEAEHSHSFAQIEAGR------GDISLTYFEFGTLSALQLFKQAKLDVVILEVG 151 (437)
T ss_dssp CEEEECCCCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred cEEEECCCCcCCcceEEEEC--CEECCHHHHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 99999999999999999999 99999999999999887653 34679999999999999999999999999999
Q ss_pred CCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec-CchhHHHHHHHhHHhcCCCCccc
Q 018577 202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFNDRPCQSC 280 (353)
Q Consensus 202 ~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~-dd~~~~~~~~~~~~~~~~~~~~~ 280 (353)
+||++|++|+++ |+++|||||+.||+++||+|+|+|+++|++|++++.++|.. ||+. .++.+.+...++++...
T Consensus 152 lggrld~tnii~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~d~~~--~~~~~~a~~~~~~~~~~ 226 (437)
T 3nrs_A 152 LGGRLDATNIVD---SDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEPDMP--QSIADVAAELGAQLYRR 226 (437)
T ss_dssp SSSTTSGGGGSC---CSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEB
T ss_pred CCCccccccccC---CCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECCccHH--HHHHHHHHHcCCcEEEe
Confidence 999999999985 57999999999999999999999999999999999886655 4442 23444444444432211
Q ss_pred --ceEEEe-------------ecceeeeee-eeeeeeCCC--chHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCC
Q 018577 281 --DIIVQA-------------ERDLKLSIE-LLDVKLCMI--GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEH 342 (353)
Q Consensus 281 --d~~~~~-------------~~~~~~~~~-~~~~~l~l~--G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~ 342 (353)
++.+.. ...+.+... ...+.++++ |.||+.||++|+++ . +++++.+.|++||+++.
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~Na~~Alaa~~~-~-----~lgi~~~~i~~gL~~~~ 300 (437)
T 3nrs_A 227 DVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHY-S-----ELPLSDEAIRQGLQAAS 300 (437)
T ss_dssp TTTEEEEC--------------CCEEEEETTEEEEEECCCSSCHHHHHHHHHHHHH-H-----TCCCCHHHHHHHHHHCC
T ss_pred cccceeeecccccccccccccCceEEEecCCcceeccCCcchhHHHHHHHHHHHHH-h-----CCCCCHHHHHHHHHhCC
Confidence 111111 111222211 123456666 67777777776665 2 34999999999999995
Q ss_pred CCCcceeec
Q 018577 343 FWRAEIFLM 351 (353)
Q Consensus 343 ~~pgR~~~~ 351 (353)
|||||..+
T Consensus 301 -~pGR~e~v 308 (437)
T 3nrs_A 301 -LPGRFQVV 308 (437)
T ss_dssp -CTTSSEEE
T ss_pred -CCCceEEE
Confidence 99998765
No 2
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=3.5e-55 Score=436.47 Aligned_cols=290 Identities=29% Similarity=0.441 Sum_probs=242.5
Q ss_pred ccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577 43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~ 122 (353)
++|++|++||++++.+ ++ +++|+||+++|+.||+|+.+.++||||||||||||++||++||+++|++
T Consensus 1 ~~~~~~~~~l~~~~~~---~~----------~~~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~ 67 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL---AK----------TGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLT 67 (428)
T ss_dssp CCHHHHHHHHTTCCCC---CC----------CSSCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhhccc---CC----------CCCHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCC
Confidence 4689999999887643 33 3789999999999999999999999999999999999999999999999
Q ss_pred eEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-cCCccChhHHHHHHHHHHHhhCCCCEEEEeec
Q 018577 123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-ENGCITHFEVLTAMAFALFAQNHVDIAVIEAG 201 (353)
Q Consensus 123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~-~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG 201 (353)
||+|+|||+.+++|||++| |.+++++++.++++++.+..+.+... +..++|+||++|++||.+|.+.++|++|+|+|
T Consensus 68 vg~~~sp~l~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg 145 (428)
T 1jbw_A 68 VGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVG 145 (428)
T ss_dssp EEEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred EEEEeCCccCccceEEEEC--CEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 9999999999999999999 99999999999999998877655321 23568999999999999999999999999999
Q ss_pred CCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCcc-
Q 018577 202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQS- 279 (353)
Q Consensus 202 ~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~~- 279 (353)
++|++|.++++. |+++|||||+.||+++||+|+|+|+++|++|++++.+ |+|.||+.+.+++...+...++++..
T Consensus 146 ~~g~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~ 222 (428)
T 1jbw_A 146 IGGDTDSTNVIT---PVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRF 222 (428)
T ss_dssp SSSTTSTTCSCC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEB
T ss_pred CCccccccccCC---CCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999884 6899999999999999999999999999999998766 66778888777776655443433221
Q ss_pred -cceEEEee-----c-ceeeee--eee-eeeeCCCchHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHhcCCCCCcce
Q 018577 280 -CDIIVQAE-----R-DLKLSI--ELL-DVKLCMIGNHQLHNALTATCAALCL-RDQGGYLMLSYFLSGFREEHFWRAEI 348 (353)
Q Consensus 280 -~d~~~~~~-----~-~~~~~~--~~~-~~~l~l~G~hq~~Na~~Alaaa~~l-~~~~~gi~~~~I~~gL~~~~~~pgR~ 348 (353)
.++..... + .+.+.. ... .++++++|.||++|+++|++++..+ ...++.++.+.|++||+++. |||||
T Consensus 223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~ 301 (428)
T 1jbw_A 223 DRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-WPARL 301 (428)
T ss_dssp TTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSS
T ss_pred CccceeeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCc-CCCce
Confidence 12222110 1 122221 112 6789999999999999999999988 43445699999999999997 99999
Q ss_pred eec
Q 018577 349 FLM 351 (353)
Q Consensus 349 ~~~ 351 (353)
..+
T Consensus 302 e~~ 304 (428)
T 1jbw_A 302 EKI 304 (428)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 3
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=1.9e-55 Score=445.08 Aligned_cols=290 Identities=30% Similarity=0.414 Sum_probs=235.4
Q ss_pred cHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCe
Q 018577 44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~v 123 (353)
+|++|++||+.++. ..++ +++|+||+++++.||+|+.++++||||||||||||++||++||+++|++|
T Consensus 26 ~~~~~~~~l~~~~~--~~~~----------~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~v 93 (487)
T 2vos_A 26 SLLQVEHLLDQRWP--ETRI----------DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRT 93 (487)
T ss_dssp HHHHHHHHHTTTC-----CC----------CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhhCc--ccCC----------CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCe
Confidence 57777777776532 1122 37899999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHh-------hcCCccChhHHHHHHHHHHHhhCCCCEE
Q 018577 124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIR-------LENGCITHFEVLTAMAFALFAQNHVDIA 196 (353)
Q Consensus 124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~-------~~~~~~t~FE~~t~~a~~~f~~~~~d~~ 196 (353)
|+|+|||+.+|||||++| |.+++++.+.++++++++..+.+.. .....+|+||++|++||.+|.+.++|++
T Consensus 94 G~~tSp~l~~~~eri~i~--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~ 171 (487)
T 2vos_A 94 GRTTSPHLQSPVERISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVA 171 (487)
T ss_dssp EEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEE
T ss_pred EEECCCCcCcccceEEEC--CEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 999999999999999999 9999999999999999988766532 1244699999999999999999999999
Q ss_pred EEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcc------cCCCc-eeecCchhHHHHHHHh
Q 018577 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII------KYGRP-VVSAYDAGIRATINGL 269 (353)
Q Consensus 197 VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Ii------k~g~~-vv~~dd~~~~~~~~~~ 269 (353)
|+|+|+||++|.+|+++ |+++|||||+.||+++||+|+|+|+++|++|| +++.+ |+|.|||.+..++.+.
T Consensus 172 VlEvg~gg~~d~tn~i~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~ 248 (487)
T 2vos_A 172 VVEVGMGGRWDATNVIN---APVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAE 248 (487)
T ss_dssp EEECSSSSTTSTTCSSC---CSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHH
T ss_pred EEEcCCCCccccccccC---CCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHH
Confidence 99999999999999885 57999999999999999999999999999999 66666 6677888877777665
Q ss_pred HHhcCCCCcc--cceEEEe-----ec-ceeeee---eeeeeeeCCCchHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHH
Q 018577 270 SMFNDRPCQS--CDIIVQA-----ER-DLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQ--GGYLMLSYFLS 336 (353)
Q Consensus 270 ~~~~~~~~~~--~d~~~~~-----~~-~~~~~~---~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~--~~gi~~~~I~~ 336 (353)
+...++++.. .++.+.. .+ .+.+.. ....+.++++|.||++|+++|++++..+... +++++.+.|++
T Consensus 249 a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~gi~~~~i~~ 328 (487)
T 2vos_A 249 SVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRA 328 (487)
T ss_dssp HHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHH
T ss_pred HHHcCCeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHH
Confidence 5444433211 1222211 01 122221 1125789999999999999999999887321 13799999999
Q ss_pred HHhcCCCCCcceeec
Q 018577 337 GFREEHFWRAEIFLM 351 (353)
Q Consensus 337 gL~~~~~~pgR~~~~ 351 (353)
||+++. |||||..+
T Consensus 329 gL~~~~-~pGR~e~v 342 (487)
T 2vos_A 329 GFAAVT-SPGRLERM 342 (487)
T ss_dssp HHHTCC-CTTSSEEE
T ss_pred HHHhCc-CCCceEEE
Confidence 999996 99998764
No 4
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=2.6e-55 Score=439.24 Aligned_cols=287 Identities=34% Similarity=0.498 Sum_probs=234.2
Q ss_pred CCccHHHHHHHHHhchhhhhcC-CCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHc
Q 018577 41 EEPELMNFMNYLDSLKNFEKSG-VPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAE 119 (353)
Q Consensus 41 ~~~~~~~~~~~l~~~~~~~~~g-~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~ 119 (353)
--+.|++|++||++++.+ + + +++|+|++++|+.||+|+.+.++||||||||||||++||++||+++
T Consensus 11 ~~~~~~~~~~~l~~~~~~---~~~----------~~gl~~~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~ 77 (442)
T 1o5z_A 11 HHMAYLEVLRYLYHKRPM---GKV----------KPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQ 77 (442)
T ss_dssp CHHHHHHHHHHHHTC--------C----------CCCSHHHHHHHHHTTCGGGSSEEEEEECSSSHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhCcC---CCC----------CCCHHHHHHHHHHcCCchhcCCEEEEECCcCHHHHHHHHHHHHHHC
Confidence 346789999999887654 3 2 3689999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEe
Q 018577 120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE 199 (353)
Q Consensus 120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlE 199 (353)
|++||+|+|||+.+|||||++| |.+++++.+.++++++++..+.+...+..++|+||++|++||.+|.+.++|++|+|
T Consensus 78 G~~vg~~~Sphl~~~neri~in--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlE 155 (442)
T 1o5z_A 78 GYRVGSYYSPHLSTFRERIRLN--EEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLE 155 (442)
T ss_dssp TCCEEEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEECCCCcCccceeEEEC--CEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999999999999 99999999999999999887776544557899999999999999999999999999
Q ss_pred ecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCc
Q 018577 200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQ 278 (353)
Q Consensus 200 vG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~ 278 (353)
+|++|++|.++++. |+++|||||+.||+++||+|+|+|+++|++|++++.+ |+|.||+....++...+...++++.
T Consensus 156 vg~~g~~d~t~~~~---P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~ 232 (442)
T 1o5z_A 156 VGLGGRLDATNVVF---PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMY 232 (442)
T ss_dssp CSSSSTTCGGGGCC---CSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEE
T ss_pred cCCCCCccccccCC---CCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcCCChHHHHHHHHHHHHcCCcEE
Confidence 99999999999874 6899999999999999999999999999999998776 5667888877777665544443322
Q ss_pred cc--ceEEEee-----c-ceeeee-eee-eeeeCCCchHHHHHHHHHHHHHH--HHHhcCCCCCHHHHHHHHhcCCCCCc
Q 018577 279 SC--DIIVQAE-----R-DLKLSI-ELL-DVKLCMIGNHQLHNALTATCAAL--CLRDQGGYLMLSYFLSGFREEHFWRA 346 (353)
Q Consensus 279 ~~--d~~~~~~-----~-~~~~~~-~~~-~~~l~l~G~hq~~Na~~Alaaa~--~l~~~~~gi~~~~I~~gL~~~~~~pg 346 (353)
.. ++..... + .+.+.. ... .++++++|.||++|+++|++++. .+ +++.+.|+++|++|. |||
T Consensus 233 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l-----gi~~~~i~~~L~~~~-~~g 306 (442)
T 1o5z_A 233 VIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGL-----PLSEKAIREGLKNAK-NLG 306 (442)
T ss_dssp EBTTTBEEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHCC-CTT
T ss_pred EeCcceeeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhc-----CCCHHHHHHHHHhCC-CCC
Confidence 11 2222211 1 122211 112 67899999999999999999999 88 999999999999996 999
Q ss_pred ceeec
Q 018577 347 EIFLM 351 (353)
Q Consensus 347 R~~~~ 351 (353)
||..+
T Consensus 307 R~e~~ 311 (442)
T 1o5z_A 307 RFEIL 311 (442)
T ss_dssp SSEEE
T ss_pred ceEEE
Confidence 99765
No 5
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=7.4e-52 Score=411.69 Aligned_cols=277 Identities=29% Similarity=0.378 Sum_probs=225.3
Q ss_pred cHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCe
Q 018577 44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~v 123 (353)
+|++|++|+..++.+ ++ +++|+||+++|+.||+|+.+.++||||||||||||++||++||+++|++|
T Consensus 12 ~~~~~~~~~~~~~~~---~~----------~~gl~r~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~ 78 (422)
T 1w78_A 12 PLASWLSYLENLHSK---TI----------DLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKV 78 (422)
T ss_dssp CHHHHHHHHTTSSSS---SC----------CCCSHHHHHHHHHHTCSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred hHHHHHHHHHhcccC---CC----------CCCHHHHHHHHHHcCCcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCE
Confidence 588898888876533 22 37899999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCC
Q 018577 124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLG 203 (353)
Q Consensus 124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~g 203 (353)
|+|+|||+.++||||++| |.+++++.+.++++++.+.. +...+|+||++|++||.+|.+.++|++|+|+|++
T Consensus 79 g~~~s~~l~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~ 150 (422)
T 1w78_A 79 GVYSSPHLVRYTERVRVQ--GQELPESAHTASFAEIESAR------GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLG 150 (422)
T ss_dssp EEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHT------TTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred EEECCCCcCcCceEEEEC--CEECCHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 999999999999999999 99999999999998876542 2457899999999999999999999999999999
Q ss_pred CcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec-CchhHHHHHHHhHHhcCCCCcc--c
Q 018577 204 GARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFNDRPCQS--C 280 (353)
Q Consensus 204 g~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~-dd~~~~~~~~~~~~~~~~~~~~--~ 280 (353)
|++|.++++. |+++|||||+.||+|+||+|+|+|+.+|++|++++.++|.. |++. ..+...+...++++.. .
T Consensus 151 ~~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~d~~~--~~~~~~a~~~~~~~~~~g~ 225 (422)
T 1w78_A 151 GRLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEPEMP--STIADVAQEKGALLQRRGV 225 (422)
T ss_dssp STTSGGGGSC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTT
T ss_pred cccccccCCC---CCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcCccHH--HHHHHHHHHcCCceEEeCc
Confidence 9999999875 68999999999999999989999999999999988776554 4443 1232223222222111 1
Q ss_pred ceEEEee-cceeeeeeeee-eeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 281 DIIVQAE-RDLKLSIELLD-VKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 281 d~~~~~~-~~~~~~~~~~~-~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++.+... ..+.+...... +.++++ .||++|+++|++++..+ +++++.+.|++||++|. |||||..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~---~~gi~~~~i~~~L~~~~-~~gR~e~~ 293 (422)
T 1w78_A 226 EWNYSVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS---GLEVSENAIRDGIASAI-LPGRFQIV 293 (422)
T ss_dssp TBEEEECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHCC-CTTSSEEE
T ss_pred ceeeeccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhCC-CCceEEEE
Confidence 2222211 12222211112 578888 99999999999999885 45899999999999996 89998764
No 6
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.8e-38 Score=321.78 Aligned_cols=220 Identities=18% Similarity=0.167 Sum_probs=169.7
Q ss_pred cCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 018577 87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA 166 (353)
Q Consensus 87 lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~ 166 (353)
+++|+.++++||||||||||||+.||++||+++|+++++++|++. .+| +..++
T Consensus 101 ~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~-------~i~--~~~~~------------------ 153 (498)
T 1e8c_A 101 YHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN-------GLL--GKVIP------------------ 153 (498)
T ss_dssp TTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEE-------EET--TCCBC------------------
T ss_pred hCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCc-------ccC--Ceeee------------------
Confidence 588988999999999999999999999999999999999999863 244 33332
Q ss_pred HhhcCCccChhHHHHHHH-HHHHhhCCCCEEEEeecC----CCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHH
Q 018577 167 IRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIA 241 (353)
Q Consensus 167 ~~~~~~~~t~FE~~t~~a-~~~f~~~~~d~~VlEvG~----gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia 241 (353)
..+|+||..++++ |.+|.+.++|++|+|+|+ ++++|. .+|+++|||||+.||+++|| |+|+|+
T Consensus 154 -----~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~------~~p~vaViTNI~~DHld~~g-t~e~ia 221 (498)
T 1e8c_A 154 -----TENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAA------LKFAASVFTNLSRDHLDYHG-DMEHYE 221 (498)
T ss_dssp -----CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTT------CBCSEEEECCCCSCCHHHHS-SHHHHH
T ss_pred -----cCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccc------cCCCEEEEeCCChhhhhccC-CHHHHH
Confidence 1357788888775 667889999999999986 455544 34789999999999999998 999999
Q ss_pred HHHHhcccC---CCceeecCchhHHHHHHHhH------HhcCCCCccc---ceEEEe-----ec-ceeeee--eeeeeee
Q 018577 242 MAKSGIIKY---GRPVVSAYDAGIRATINGLS------MFNDRPCQSC---DIIVQA-----ER-DLKLSI--ELLDVKL 301 (353)
Q Consensus 242 ~~Ka~Iik~---g~~vv~~dd~~~~~~~~~~~------~~~~~~~~~~---d~~~~~-----~~-~~~~~~--~~~~~~l 301 (353)
++|++|++. +..|+|.|||....++.... ..++..- .. ++.... .+ .+.+.. ....+.+
T Consensus 222 ~aK~~i~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~~~~l 300 (498)
T 1e8c_A 222 AAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINP-NCHGRWLKATEVNYHDSGATIRFSSSWGDGEIES 300 (498)
T ss_dssp HHHHHHHHTSBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCT-TTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEE
T ss_pred HHHHHHhccCCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecCC-CCCcCCEEEEEEEEcCCceEEEEEECCceEEEEe
Confidence 999999985 44588999998766654321 1112100 01 232211 01 122221 1236789
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 302 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 302 ~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++|.||++|+++|++++..+ |++.+.|+++|++|.+|||||..+
T Consensus 301 ~l~G~hnv~NalaAia~~~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v 345 (498)
T 1e8c_A 301 HLMGAFNVSNLLLALATLLAL-----GYPLADLLKTAARLQPVCGRMEVF 345 (498)
T ss_dssp CSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCTTSSEEE
T ss_pred cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence 999999999999999999999 999999999999998899999765
No 7
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=6.8e-38 Score=320.09 Aligned_cols=229 Identities=21% Similarity=0.241 Sum_probs=174.8
Q ss_pred HHHHHHHHH-cCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 78 GRMNRLMDR-LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 78 ~r~~~~l~~-lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
..+..+.+. +++|+.++++||||||||||||+.||++||+++|+++++++|. ++.+| |..++
T Consensus 129 ~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~--~~~~~-------- 191 (535)
T 2wtz_A 129 GVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVG--GADLP-------- 191 (535)
T ss_dssp HHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEET--TEEEC--------
T ss_pred HHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeEC--CEecc--------
Confidence 344444443 6889888999999999999999999999999999999999873 44567 66664
Q ss_pred HHHHHHHHHHHhhcCCccChhHHHHHHHHH-HHhhCCCCEEEEeecC----CCcccccccccccCCcEEEEccCChhhHh
Q 018577 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFA-LFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHTA 231 (353)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~-~f~~~~~d~~VlEvG~----gg~~D~tn~v~~~~p~vaVITnI~~DHl~ 231 (353)
..+|.||..++.+++ .|.+.++|++|+|+|+ ++++|. .+|+++|||||+.||+|
T Consensus 192 ---------------~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~------~~p~vaViTNI~~DHld 250 (535)
T 2wtz_A 192 ---------------SALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG------TRFAVGAFTNLSRDHLD 250 (535)
T ss_dssp ---------------CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTT------CCEEEEEECCCCSCCTT
T ss_pred ---------------cCCccCcHHHHHHHHHHHHhCCCCEEEEECCCcccccccccc------CCcCEEEEcCCChHHhh
Confidence 246788999988874 6778999999999996 445443 35789999999999999
Q ss_pred hhCCCHHHHHHHHHhcccCC------CceeecCchhHHHHHHHhH--HhcCC-----CCcccceEEE-eec-ceeeee--
Q 018577 232 ALGGSLETIAMAKSGIIKYG------RPVVSAYDAGIRATINGLS--MFNDR-----PCQSCDIIVQ-AER-DLKLSI-- 294 (353)
Q Consensus 232 ~lG~tle~ia~~Ka~Iik~g------~~vv~~dd~~~~~~~~~~~--~~~~~-----~~~~~d~~~~-~~~-~~~~~~-- 294 (353)
+|| |+|+|+++|++|++.. ..|+|+|||....+..... ..++. ++...++... ..+ .|.+..
T Consensus 251 ~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~~v~~~g~~~~~~d~~~~~i~~~~~~g~~f~~~~~~ 329 (535)
T 2wtz_A 251 FHP-SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPA 329 (535)
T ss_dssp TSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHSSCEEEESSSSCCSEEEEEEEEETTTEEEEEEECTT
T ss_pred hcC-CHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcCCEEEEecCCCcCcEEEEEEEEcCCCCeEEEEEeCC
Confidence 998 9999999999999854 4699999998766655321 11221 1111111111 111 122221
Q ss_pred ee-eeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 295 EL-LDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 295 ~~-~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
.. ..+.++++|.||++|+++|++++..+ |++.+.|+++|++|. |||||..+
T Consensus 330 ~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~~~-~~gR~e~v 381 (535)
T 2wtz_A 330 GVGHHIGIRLPGRYNVANCLVALAILDTV-----GVSPEQAVPGLREIR-VPGRLEQI 381 (535)
T ss_dssp SCEEEEEESCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCC-CTTSSEEC
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCC-CCCceEEE
Confidence 11 36889999999999999999999999 999999999999998 99999765
No 8
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=7.4e-36 Score=299.14 Aligned_cols=221 Identities=20% Similarity=0.266 Sum_probs=153.8
Q ss_pred CChHHHHHHHHHcCCCC---CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHH
Q 018577 75 FDLGRMNRLMDRLGNPH---SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKA 151 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~---~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~ 151 (353)
..+++++++|..|+++. .+.++||||||||||||+.||++||+++| +++ +++ .+++++ +|.|.
T Consensus 78 i~v~~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~---g~~n~~-----ig~p~---- 143 (452)
T 1gg4_A 78 LIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA---GNLNND-----IGVPM---- 143 (452)
T ss_dssp EEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC---TTCCST-----THHHH----
T ss_pred EEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc---ccccCC-----cchhH----
Confidence 34678899999888765 35799999999999999999999999999 565 444 233332 23322
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccc---ccccccccCCcEEEEccCChh
Q 018577 152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEE 228 (353)
Q Consensus 152 ~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D---~tn~v~~~~p~vaVITnI~~D 228 (353)
|.|| .+.++|++|+|+|+++++| .++.+ +|+++|||||++|
T Consensus 144 -----------------------t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~---~p~vaviTNI~~D 187 (452)
T 1gg4_A 144 -----------------------TLLR----------LTPEYDYAVIELGANHQGEIAWTVSLT---RPEAALVNNLAAA 187 (452)
T ss_dssp -----------------------HHTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH---CCSEEEECCCC--
T ss_pred -----------------------HHHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc---CCCEEEECCCChH
Confidence 1111 2567999999999999998 45544 4789999999999
Q ss_pred hHhhhCCCHHHHHHHHHhccc---C-CCceeecCchhHHHHHHHh--H--HhcCCCCcccceEEEe-----ec-ceeeee
Q 018577 229 HTAALGGSLETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGL--S--MFNDRPCQSCDIIVQA-----ER-DLKLSI 294 (353)
Q Consensus 229 Hl~~lG~tle~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~--~--~~~~~~~~~~d~~~~~-----~~-~~~~~~ 294 (353)
|+|+|| |+|+|+++|++|++ + +..|+|.|||....+.+.. + ..++..-...++.... .+ .+.+..
T Consensus 188 Hld~~g-t~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~ 266 (452)
T 1gg4_A 188 HLEGFG-SLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQT 266 (452)
T ss_dssp -------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEE
T ss_pred HhhhcC-CHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHHhhcCCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEE
Confidence 999998 99999999999998 3 3458899998776653210 0 1112100001222211 11 122221
Q ss_pred --eeeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 295 --ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 295 --~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
....++++++|.||++|+++|++++..+ |++.+.|+++|++|.++||||..+
T Consensus 267 ~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~ 320 (452)
T 1gg4_A 267 PTGSVDVLLPLPGRHNIANALAAAALSMSV-----GATLDAIKAGLANLKAVPGRLFPI 320 (452)
T ss_dssp TTEEEEEEECSSSTHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCCCCTTSSEEE
T ss_pred CCCEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCceEE
Confidence 1236789999999999999999999999 999999999999998999999765
No 9
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=2.5e-36 Score=302.62 Aligned_cols=217 Identities=16% Similarity=0.144 Sum_probs=156.1
Q ss_pred hHHHHHHHHHcCCCCC---CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHH
Q 018577 77 LGRMNRLMDRLGNPHS---KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN 153 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~---~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~ 153 (353)
.++++++|..|+.+.. +.++||||||||||||+.||++||+++|. + ++||| +++++ +|.|++
T Consensus 80 v~~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~-~--~~s~g--~~n~~-----ig~p~t----- 144 (454)
T 2am1_A 80 VDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK-T--YKTQG--NYNNE-----IGLPYT----- 144 (454)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC-E--EECCT--TCCST-----THHHHH-----
T ss_pred ECCHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC-E--eecCC--ccCcc-----cchHHH-----
Confidence 4567777777765543 67999999999999999999999999994 3 67887 34432 233321
Q ss_pred HHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccc---ccccccccCCcEEEEccCChhhH
Q 018577 154 CLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEEHT 230 (353)
Q Consensus 154 ~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D---~tn~v~~~~p~vaVITnI~~DHl 230 (353)
.|| .+.++|++|+|+|+++++| .++.+ +|+++|||||++||+
T Consensus 145 ----------------------~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~---~p~vaviTNi~~DHl 189 (454)
T 2am1_A 145 ----------------------VLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA---RPKTAIVTLVGEAHL 189 (454)
T ss_dssp ----------------------HHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH---CCSEEEECCCCCSSC
T ss_pred ----------------------Hhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc---CCCEEEEcCCchHhh
Confidence 111 2568999999999999998 55554 478999999999999
Q ss_pred hhhCCCHHHHHHHHHhcccC----CCceeecCchhHHHHHHHh--HHhcCCCCcccce-EEEee-c--ceeeeeeeeeee
Q 018577 231 AALGGSLETIAMAKSGIIKY----GRPVVSAYDAGIRATINGL--SMFNDRPCQSCDI-IVQAE-R--DLKLSIELLDVK 300 (353)
Q Consensus 231 ~~lG~tle~ia~~Ka~Iik~----g~~vv~~dd~~~~~~~~~~--~~~~~~~~~~~d~-~~~~~-~--~~~~~~~~~~~~ 300 (353)
|+|| |+|+|+++|++|++. +..|+|.|| ......... ...++..- ..++ .+... . .+.+......++
T Consensus 190 d~~g-t~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~~~~~~~~~~~~g~~~-~~d~~~i~~~~~~~~~~~~~~~~~~~ 266 (454)
T 2am1_A 190 AFFK-DRSEIAKGKMQIADGMASGSLLLAPADP-IVEDYLPIDKKVVRFGQGA-ELEITDLVERKDSLTFKANFLEQALD 266 (454)
T ss_dssp TTCC-CHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGGGCCSSSEEEEESTTS-SBCEEEEEECSSCEEEEETTCSSEEE
T ss_pred hhcC-CHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHHHHhcCCcEEEEeCCC-CCceeeeEEeCCceEEEEEecCcEEE
Confidence 9998 999999999999983 345888887 543221110 00111100 0122 11111 1 122211111578
Q ss_pred eCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 301 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 301 l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++++|.||++|+++|++++..+ |++.+.|+++|++|.++||||..+
T Consensus 267 l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~ 312 (454)
T 2am1_A 267 LPVTGKYNATNAMIASYVALQE-----GVSEEQIRLAFQHLELTRNRTEWK 312 (454)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCCCCSCEE
T ss_pred ecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCccCCeeEE
Confidence 9999999999999999999999 999999999999998899999765
No 10
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=6.3e-34 Score=284.11 Aligned_cols=196 Identities=19% Similarity=0.136 Sum_probs=145.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++||||||||||||++||++||+++|++++++++ +|.|++..
T Consensus 104 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gn--------------ig~~~~~~----------------------- 146 (439)
T 2x5o_A 104 APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN--------------IGLPALML----------------------- 146 (439)
T ss_dssp SCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEES--------------SSBCHHHH-----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecc--------------cCHHHHHH-----------------------
Confidence 68999999999999999999999999999987532 36666421
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP 253 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~ 253 (353)
+ ..+.|++|+|+|+ +.+|.++.+. |+++|||||++||+|+||+|+|+|+++|++|++.+.+
T Consensus 147 --------------~-~~~~d~~VlE~~~-~~l~~~~~~~---p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~ 207 (439)
T 2x5o_A 147 --------------L-DDECELYVLELSS-FQLETTSSLQ---AVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKV 207 (439)
T ss_dssp --------------C-CTTCCEEEEECCH-HHHHTCCCCC---CSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSE
T ss_pred --------------h-CCCCCEEEEECCc-hhhcccccCC---CCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCE
Confidence 1 2346999999999 5678777654 6899999999999999977999999999999998554
Q ss_pred -eeecCchhHHHHHHHhH--HhcCCCCc-ccceEEEeecceeeee--eee-eeeeCCCchHHHHHHHHHHHHHHHHHhcC
Q 018577 254 -VVSAYDAGIRATINGLS--MFNDRPCQ-SCDIIVQAERDLKLSI--ELL-DVKLCMIGNHQLHNALTATCAALCLRDQG 326 (353)
Q Consensus 254 -vv~~dd~~~~~~~~~~~--~~~~~~~~-~~d~~~~~~~~~~~~~--~~~-~~~l~l~G~hq~~Na~~Alaaa~~l~~~~ 326 (353)
|+|.|||.+..++...+ ..++..-. ..++... .+.+.+.. ... .++++++|.||++|+++|++++..+
T Consensus 208 ~V~n~dd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l---- 282 (439)
T 2x5o_A 208 CVVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQ-GETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA---- 282 (439)
T ss_dssp EEEETTCGGGSCSCCCSSCCEEECSSSSSEEEEEET-TEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT----
T ss_pred EEEeCCCHHHHHHhhcCCcEEEEeCCCcCcCcEEEE-CCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHc----
Confidence 77888886543322100 01111000 0011110 01111111 111 3578999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCcceeec
Q 018577 327 GYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 327 ~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++.+.|+++|++|++|||||..+
T Consensus 283 -gi~~~~i~~~L~~f~~~~gR~e~~ 306 (439)
T 2x5o_A 283 -GLPRASSLKALTTFTGLPHRFEVV 306 (439)
T ss_dssp -TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred -CCCHHHHHHHHHhCCCCCCceEEE
Confidence 999999999999999999999764
No 11
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=6.7e-33 Score=278.95 Aligned_cols=194 Identities=18% Similarity=0.115 Sum_probs=146.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccc-eeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIR-ERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN 171 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~-eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~ 171 (353)
+.++||||||||||||++||++||+++|++++.|+||++.+++ ++++++
T Consensus 113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------ 162 (469)
T 1j6u_A 113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------ 162 (469)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence 4689999999999999999999999999999999999986665 554432
Q ss_pred CccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC
Q 018577 172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG 251 (353)
Q Consensus 172 ~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g 251 (353)
+.| +|+|+++.. .++. ..+|+++|||||++||+|+||+|+|+|+++|..+++..
T Consensus 163 --------------------~~~-~V~E~~~~~---~~~~--~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~ 216 (469)
T 1j6u_A 163 --------------------NGP-VVYELDESE---EFFS--EFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNT 216 (469)
T ss_dssp --------------------SSC-EEEEECTTS---GGGG--GCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTC
T ss_pred --------------------CCC-EEEECCCcc---Cccc--cccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhC
Confidence 246 999998763 4443 23578999999999999999966999999998877643
Q ss_pred -CceeecCchhHHHHHHHhHHhcCC---CCcccceEEEeec--ceeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHH
Q 018577 252 -RPVVSAYDAGIRATINGLSMFNDR---PCQSCDIIVQAER--DLKLSIE---LLDVKLCMIGNHQLHNALTATCAALCL 322 (353)
Q Consensus 252 -~~vv~~dd~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~--~~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l 322 (353)
.+|+|+|||.+..+ ....++. ++.. ++...... .|.+... ...++++++|.||++|+++|++++..+
T Consensus 217 ~~~V~n~dd~~~~~~---~~~~~g~~~~d~~~-~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l 292 (469)
T 1j6u_A 217 DLVVTFAEDELTSHL---GDVTFGVKKGTYTL-EMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL 292 (469)
T ss_dssp SEEEEETTCTTTGGG---CSEEECSSSSSEEE-EEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCChhhccc---eEEEEECCCceEEE-EEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHc
Confidence 57899998865422 1112222 1111 11111111 1222111 125789999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 323 RDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 323 ~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+++.+.|+++|++|++|||||..+
T Consensus 293 -----gi~~~~i~~~L~~f~g~~gR~e~v 316 (469)
T 1j6u_A 293 -----GYDLAPVLEALEEFRGVHRRFSIA 316 (469)
T ss_dssp -----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred -----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence 999999999999998899999765
No 12
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=4.1e-33 Score=279.21 Aligned_cols=197 Identities=19% Similarity=0.124 Sum_probs=145.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||+.||++||+.+|+++.+ .+|+|.|++..
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gnig~~~~~~----------------------- 154 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLL--------------AGNIGFPASEV----------------------- 154 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEE--------------EETSSSCHHHH-----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEE--------------eeecChhhhhh-----------------------
Confidence 48999999999999999999999999988743 24457665420
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC-
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR- 252 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~- 252 (353)
.....++|++|+|+|+++ +|.++.+ +|+++|||||++||+|+|| |+|+|+++|++|++...
T Consensus 155 -------------~~~~~~~d~~VlE~~s~~-l~~~~~~---~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~ 216 (451)
T 3lk7_A 155 -------------VQAANDKDTLVMELSSFQ-LMGVKEF---RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSS 216 (451)
T ss_dssp -------------TTTCCTTCEEEEECCHHH-HTTCSSC---CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCT
T ss_pred -------------hhcCCCCCEEEEECCccc-ccccccc---CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCC
Confidence 011346899999999876 4666554 4789999999999999998 99999999999998643
Q ss_pred ---ceeecCchhHHHHHHHhH---HhcCCCCcccceEEEeecceeeeee--eeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577 253 ---PVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQAERDLKLSIE--LLDVKLCMIGNHQLHNALTATCAALCLRD 324 (353)
Q Consensus 253 ---~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~l~l~G~hq~~Na~~Alaaa~~l~~ 324 (353)
.|+|.|||.+..+.+... ..++......++... ...+.+... ...++++++|.||++|+++|++++..+
T Consensus 217 ~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-- 293 (451)
T 3lk7_A 217 SDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQ-DKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLA-- 293 (451)
T ss_dssp TSEEEEETTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE-TTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHH--
T ss_pred CCEEEEECCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE-CCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHc--
Confidence 588999998765543210 011111000011111 111111111 124678999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 325 QGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
|++.+.|+++|++|+++||||..+
T Consensus 294 ---gi~~~~i~~~L~~f~~~~gR~e~v 317 (451)
T 3lk7_A 294 ---GISNQVIRETLSNFGGVKHRLQSL 317 (451)
T ss_dssp ---TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred ---CCCHHHHHHHHHhCCCCCCcEEEE
Confidence 999999999999999999999764
No 13
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=99.98 E-value=5.2e-32 Score=272.79 Aligned_cols=210 Identities=19% Similarity=0.159 Sum_probs=148.0
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
+.++..+.+.++ ..++||||||||||||++||++||+++|+++.+. ++ |...+...
T Consensus 105 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~----- 160 (475)
T 1p3d_A 105 IQRAQMLAEIMR----FRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFV-------------NG--GLVKSAGK----- 160 (475)
T ss_dssp EEHHHHHHHHHH----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred EEHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Cccccccc-----
Confidence 555655555554 2589999999999999999999999999873221 22 22221100
Q ss_pred HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCC
Q 018577 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (353)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~t 236 (353)
+ ....++|++|+|+|. .|.++.. .+|+++|||||++||+|+||+|
T Consensus 161 -----------------~-------------~~~~~~d~~VlE~~~---~~~~~~~--~~p~vaviTNI~~DHld~~G~t 205 (475)
T 1p3d_A 161 -----------------N-------------AHLGASRYLIAEADE---SDASFLH--LQPMVSVVTNMEPDHMDTYEGD 205 (475)
T ss_dssp -----------------E-------------EECCSSSEEEEECCC---TTSGGGG--CCCSEEEECCCCCCSGGGGTTC
T ss_pred -----------------c-------------cccCCCCEEEEEecC---CcCcccc--ccCCEEEEcCCChhhhhhhcCC
Confidence 0 012468999999974 4556543 3578999999999999999779
Q ss_pred HHHHHHHHHhccc---C-CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEe---ec---ceeeee---eeeeee
Q 018577 237 LETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQA---ER---DLKLSI---ELLDVK 300 (353)
Q Consensus 237 le~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~---~~---~~~~~~---~~~~~~ 300 (353)
+|+|+++|++++. + +..|+|.|||.+..++.... ..++..- ..++.... .. .|.+.. ....++
T Consensus 206 ~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 284 (475)
T 1p3d_A 206 FEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSE-QADYRIEDYEQTGFQGHYTVICPNNERINVL 284 (475)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESST-TCSEEEEEEEEETTEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCC-CCcEEEEEEEEcCCceEEEEEECCCeEEEEE
Confidence 9999999998864 3 45688999998776665421 1111100 01222211 11 122211 113678
Q ss_pred eCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 301 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 301 l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++++|.||++|+++|++++..+ |++.+.|+++|++|.++||||..+
T Consensus 285 l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~~L~~f~~~~gR~e~v 330 (475)
T 1p3d_A 285 LNVPGKHNALNATAALAVAKEE-----GIANEAILEALADFQGAGRRFDQL 330 (475)
T ss_dssp ESSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred EcCccHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence 9999999999999999999999 999999999999998899999764
No 14
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=99.98 E-value=4.6e-32 Score=274.27 Aligned_cols=210 Identities=21% Similarity=0.214 Sum_probs=147.6
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
+.++..+.+.++ ..++||||||||||||++||++||+++|+++.+. ++ |...+...
T Consensus 106 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~----- 161 (491)
T 2f00_A 106 IRRAEMLAELMR----FRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFV-------------NG--GLVKAAGV----- 161 (491)
T ss_dssp EEHHHHHHHHHT----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred EEHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Ceeccccc-----
Confidence 455555555554 2589999999999999999999999999863221 22 22221100
Q ss_pred HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCC
Q 018577 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS 236 (353)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~t 236 (353)
+ ....++|++|+|+| +.|.++.. .+|+++|||||++||+|+||+|
T Consensus 162 -----------------~-------------~~~~~~d~~VlE~~---~~~~~~~~--~~p~vaviTNI~~DHld~~G~t 206 (491)
T 2f00_A 162 -----------------H-------------ARLGHGRYLIAEAD---ESDASFLH--LQPMVAIVTNIEADHMDTYQGD 206 (491)
T ss_dssp -----------------E-------------EECCSSSEEEEECC---CTTSGGGG--CCCSEEEECCCCSCSGGGTTTC
T ss_pred -----------------c-------------ccCCCCCEEEEEeC---CCccchhc--CCCCEEEEcCCChhhhhhhcCC
Confidence 0 01246899999997 44556643 3578999999999999999779
Q ss_pred HHHHHHHHHhccc---C-CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEe---ec---ceeeee---eeeeee
Q 018577 237 LETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQA---ER---DLKLSI---ELLDVK 300 (353)
Q Consensus 237 le~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~---~~---~~~~~~---~~~~~~ 300 (353)
+|+|+++|++++. + +..|+|.|||.+..++.... ..++.. ...++.... .. .|.+.. ....++
T Consensus 207 ~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 2f00_A 207 FENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFS-EDADVRVEDYQQIGPQGHFTLLRQDKEPMRVT 285 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSEEEEEESS-TTCSEEEEEEEEETTEEEEEEECTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhcCCcEEEEeCC-CCCCEEEEEEEEcCCceEEEEEECCceEEEEE
Confidence 9999999999874 3 45688999987766554320 111110 001222111 11 122211 113678
Q ss_pred eCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 301 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 301 l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++++|.||++|+++|++++..+ |++.+.|+++|++|.+|||||..+
T Consensus 286 l~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~e~v 331 (491)
T 2f00_A 286 LNAPGRHNALNAAAAVAVATEE-----GIDDEAILRALESFQGTGRRFDFL 331 (491)
T ss_dssp ESSCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred EccchHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence 9999999999999999999999 999999999999998899999764
No 15
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.98 E-value=5.4e-32 Score=260.29 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=140.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG 172 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~ 172 (353)
..++|+||||||||||+.||++||+.+|++++....--..+++.... +|.|.+.
T Consensus 107 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~---~~~p~~~----------------------- 160 (326)
T 3eag_A 107 HHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSAR---LPQTPRQ----------------------- 160 (326)
T ss_dssp GSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEE---CCCCCSS-----------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCccee---cCCcccc-----------------------
Confidence 46899999999999999999999999999886532210011111000 1233221
Q ss_pred ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccccccccc--ccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC
Q 018577 173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250 (353)
Q Consensus 173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~--~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~ 250 (353)
....+.|++|+|+|+.+......+++ ..+|+++|||||++||+|+|| |+|+|+++|++|++.
T Consensus 161 ---------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~ 224 (326)
T 3eag_A 161 ---------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRT 224 (326)
T ss_dssp ---------------CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTT
T ss_pred ---------------ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHh
Confidence 13567999999999865433333221 246899999999999999998 999999999999973
Q ss_pred ----CCceeecCchhHHHHHHHhH----HhcCCCCcccceEEEe---ecceeeeee---eeeeeeCCCchHHHHHHHHHH
Q 018577 251 ----GRPVVSAYDAGIRATINGLS----MFNDRPCQSCDIIVQA---ERDLKLSIE---LLDVKLCMIGNHQLHNALTAT 316 (353)
Q Consensus 251 ----g~~vv~~dd~~~~~~~~~~~----~~~~~~~~~~d~~~~~---~~~~~~~~~---~~~~~l~l~G~hq~~Na~~Al 316 (353)
+..|+|.|||....++...+ ..++. ..++.... .+.|.+... ...++++++|.||++|+++|+
T Consensus 225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~---~~d~~~~~~~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT---EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESS---SSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECC---CCcEEEEEecCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHH
Confidence 44589999998776654321 11221 11332211 111222211 246789999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhcCCC
Q 018577 317 CAALCLRDQGGYLMLSYFLSGFREEHF 343 (353)
Q Consensus 317 aaa~~l~~~~~gi~~~~I~~gL~~~~~ 343 (353)
++|..+ |++.+.|+++|++|++
T Consensus 302 a~a~~l-----Gi~~~~i~~~L~~f~g 323 (326)
T 3eag_A 302 AAARHV-----GVDIQTACEALGAFKN 323 (326)
T ss_dssp HHHHHH-----TCCHHHHHHHHHTCCC
T ss_pred HHHHHc-----CCCHHHHHHHHHhCCC
Confidence 999999 9999999999999953
No 16
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=99.97 E-value=1.1e-31 Score=271.84 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=142.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC 173 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~ 173 (353)
.++|+||||||||||+.||++||+.+|+++...+.. ..|++|.+.
T Consensus 122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg---------~~~~~g~~~-------------------------- 166 (494)
T 4hv4_A 122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGG---------LVKAAGTHA-------------------------- 166 (494)
T ss_dssp SEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEE---------EETTTTEEE--------------------------
T ss_pred CCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECC---------ccccccccc--------------------------
Confidence 479999999999999999999999999864322111 012222221
Q ss_pred cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC---
Q 018577 174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--- 250 (353)
Q Consensus 174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--- 250 (353)
...+.|++|+|+|.++. +.. ..+|+++|||||++||+|+||+|+|+|+++|++|++.
T Consensus 167 ---------------~~~~~d~~VlE~~e~~~---s~~--~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~ 226 (494)
T 4hv4_A 167 ---------------RLGSSRYLIAEADESDA---SFL--HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPF 226 (494)
T ss_dssp ---------------ECCSSSEEEEECCCGGG---GGG--GCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCT
T ss_pred ---------------ccCCCcEEEEEcccccc---ccc--cccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCC
Confidence 12458999999986543 322 3458999999999999999977999999999999975
Q ss_pred -CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEe---ec---ceeeee---eeeeeeeCCCchHHHHHHHHHHH
Q 018577 251 -GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQA---ER---DLKLSI---ELLDVKLCMIGNHQLHNALTATC 317 (353)
Q Consensus 251 -g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~---~~---~~~~~~---~~~~~~l~l~G~hq~~Na~~Ala 317 (353)
+..|+|.|||.+..+++... ..++.. ...++.... .. .|.+.. ....++++++|.||++|+++|++
T Consensus 227 ~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia 305 (494)
T 4hv4_A 227 YGRAVMCIDDPVVRELLPRVGRHITTYGFS-DDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVA 305 (494)
T ss_dssp TCEEEEETTSHHHHHHGGGCCSCEEEEESS-TTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHhcCCCEEEEecC-CCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHH
Confidence 45699999998776654321 111110 011222211 11 122221 13457899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
++..+ |++.+.|+++|++|+++||||..+
T Consensus 306 ~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v 334 (494)
T 4hv4_A 306 VATEE-----GIEDEDILRALVGFQGTGRRFDFL 334 (494)
T ss_dssp HHHHH-----TCCHHHHHHHHHHCCCBTTSSEEE
T ss_pred HHHHc-----CCCHHHHHHHHHhCCCCCCccEEe
Confidence 99999 999999999999998899999764
No 17
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=99.97 E-value=1.9e-31 Score=271.78 Aligned_cols=215 Identities=17% Similarity=0.156 Sum_probs=140.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEe--------cCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHH
Q 018577 93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY--------TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLD 164 (353)
Q Consensus 93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~--------tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~ 164 (353)
..++|+||||||||||+.||++||+++|++++.. +||.. ++ +++|.+...
T Consensus 121 ~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~~T~~n--ln-----~~ig~~~~~--------------- 178 (524)
T 3hn7_A 121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTN--LQ-----QVFAHSSYL--------------- 178 (524)
T ss_dssp GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCHH--HH-----HHTTSSEEC---------------
T ss_pred cCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccccCchh--hh-----hhhhhHHhh---------------
Confidence 4689999999999999999999999999988642 22210 00 111222100
Q ss_pred HHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccccccccc--ccCCcEEEEccCChhhHhhhCCCHHHHHH
Q 018577 165 EAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALGGSLETIAM 242 (353)
Q Consensus 165 ~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~--~~~p~vaVITnI~~DHl~~lG~tle~ia~ 242 (353)
+....+. ..+.++|++|+|+++.+......++. ..+|+++|||||++||+|+|| |+|+|++
T Consensus 179 -----~~~~~~~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~ 241 (524)
T 3hn7_A 179 -----GTEKDDS-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQT 241 (524)
T ss_dssp -----CCCCCSS-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHH
T ss_pred -----CCCcccc-----------cccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHH
Confidence 0000000 01234689999999876544433322 246899999999999999998 9999999
Q ss_pred HHHhcccC----CCceeecCchhHHHHHHHhHH----hcCCC-------------C------cccceEEEe---ec-cee
Q 018577 243 AKSGIIKY----GRPVVSAYDAGIRATINGLSM----FNDRP-------------C------QSCDIIVQA---ER-DLK 291 (353)
Q Consensus 243 ~Ka~Iik~----g~~vv~~dd~~~~~~~~~~~~----~~~~~-------------~------~~~d~~~~~---~~-~~~ 291 (353)
+|++|++. +..|+|.|||.+..+....+. .++.. . ...++.... .+ .|.
T Consensus 242 aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~ 321 (524)
T 3hn7_A 242 QFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFT 321 (524)
T ss_dssp HHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEE
T ss_pred HHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEE
Confidence 99999973 456999999987766543210 11100 0 011222111 11 122
Q ss_pred eee--e---eeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577 292 LSI--E---LLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM 351 (353)
Q Consensus 292 ~~~--~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~ 351 (353)
+.. . ...++++++|.||++|+++|++++..+ |++.+.|+++|++|+++||||..+
T Consensus 322 l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~ 381 (524)
T 3hn7_A 322 VSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNI-----GVSVKTACAALSAFAGIKRRMELI 381 (524)
T ss_dssp EEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred EEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCceEEEE
Confidence 221 1 246789999999999999999999999 999999999999998899999765
No 18
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=95.85 E-value=0.018 Score=55.07 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=31.7
Q ss_pred CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
.+.|.|+|| -||++|+..|...|++.|++++.+.+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~t 189 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLAT 189 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEec
Confidence 578999998 69999999999999999999998654
No 19
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.19 E-value=0.067 Score=45.83 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=28.3
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|+ |-.||||++..|+..|...|++|.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 678888 45779999999999999999999874
No 20
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.19 E-value=0.043 Score=51.62 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.|+|+|+| --|||||+.-|+..|.+.|+||++.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 568999996 5689999999999999999999885
No 21
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.76 E-value=0.16 Score=45.54 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=27.3
Q ss_pred cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|++ -.||||++..|+..|...|++|.+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 5677765 4689999999999999999999875
No 22
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.37 E-value=0.53 Score=46.21 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=29.7
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..+|.++|-+ |||||+..|+..|...|++|.+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999964 699999999999999999998754
No 23
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=93.31 E-value=0.075 Score=47.52 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 92 ~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.+.+.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 35688999998 6999999999999999999999874
No 24
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.07 E-value=0.9 Score=44.70 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=29.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.++|.++|. .|||||+.-|+..|...|++|.+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568888886 5799999999999999999998754
No 25
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=92.43 E-value=0.51 Score=50.13 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=31.3
Q ss_pred CCcEEEEcCC---CCchHHHHHHHHHHHHc-----CCCeEEec
Q 018577 93 KFKTVHIAGT---KGKGSTAAFLSSILRAE-----GYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~-----G~~vg~~t 127 (353)
..+.|-|+|| .|||+++.-|..+|+.. |++|+.|-
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 3578999998 69999999999999999 99999884
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.30 E-value=0.1 Score=45.43 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=28.4
Q ss_pred cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|+++ .||||++.-|+..|.+.|+||.++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 56788776 689999999999999999999885
No 27
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.92 E-value=0.18 Score=43.01 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..++|.|+|.. ||||++..|...|...|++|+.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 46899999974 999999999999999999998865
No 28
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=91.43 E-value=0.3 Score=46.65 Aligned_cols=37 Identities=32% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+.+.|.|+|| -|||+|+..|...|++.|++++.+.+.
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg 207 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG 207 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC
Confidence 3678999998 699999999999999999999987654
No 29
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=91.11 E-value=0.2 Score=45.46 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEec
Q 018577 92 SKFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 92 ~~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.+.+.|-||||. |||+++..|...|++.|++|+.|-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456889999984 999999999999999999999874
No 30
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.72 E-value=0.5 Score=43.10 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=31.8
Q ss_pred CCCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 90 PHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 90 p~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+....++|.||++ -||||++.-|+..|.+.|+||.+.
T Consensus 78 ~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 78 PDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp TTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3456789999976 689999999999999999999874
No 31
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=90.63 E-value=0.23 Score=44.87 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.6
Q ss_pred CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..+.|-|||| .|||+++..|...|++.|++|+.|-
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 3578999998 7999999999999999999999874
No 32
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.30 E-value=0.45 Score=45.64 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHcCCC-----CCCCcEEEEcC---CCCchHHHHHHHHHHH------HcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNP-----HSKFKTVHIAG---TKGKGSTAAFLSSILR------AEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p-----~~~~~vI~VtG---TnGKtSTt~ml~~IL~------~~G~~vg~~ 126 (353)
.++.+..+...++.+ ....++|+|++ --||||++..|+..|. ..|++|.+.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 688898888887543 34578999985 4689999999999998 469999773
No 33
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.04 E-value=0.29 Score=42.90 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.0
Q ss_pred cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|+++ .||||++..|+..|.+.|++|.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 57888765 589999999999999999999875
No 34
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.83 E-value=0.34 Score=44.90 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
....++|.||++ -||||++.-|+..|.+.|++|.+.
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 345689999976 589999999999999999999874
No 35
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.51 E-value=0.29 Score=43.08 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=29.4
Q ss_pred CCcEEEEc---CCCCchHHHHHHHHHHHHc-CCCeEEe
Q 018577 93 KFKTVHIA---GTKGKGSTAAFLSSILRAE-GYSVGCY 126 (353)
Q Consensus 93 ~~~vI~Vt---GTnGKtSTt~ml~~IL~~~-G~~vg~~ 126 (353)
..++|.|+ |-.||||++..|+..|... |++|.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 45788888 4578999999999999998 9999875
No 36
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.49 E-value=0.31 Score=43.61 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=29.7
Q ss_pred CCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.++|.|++.+ ||||++..|+..|...|++|.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 45899998654 79999999999999999999874
No 37
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=89.19 E-value=1.5 Score=44.23 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=30.0
Q ss_pred cEEEEc-CC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~Vt-GT---nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
+.|-|+ || -|||.+++-|..+|+..|++|..|-+
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~ 41 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKL 41 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeec
Confidence 567788 65 79999999999999999999988855
No 38
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=88.52 E-value=2 Score=43.43 Aligned_cols=34 Identities=41% Similarity=0.592 Sum_probs=30.4
Q ss_pred cEEEEc-CC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~Vt-GT---nGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
+.|-|+ || -|||.+++-|..+|+..|++|..|-+
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~ 50 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKI 50 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeec
Confidence 678888 65 79999999999999999999988855
No 39
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.17 E-value=0.56 Score=43.18 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=31.0
Q ss_pred CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+.++|.||++ -||||++.-|+..|.+.|++|.+.
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 345689999876 589999999999999999999774
No 40
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.05 E-value=0.47 Score=42.04 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.8
Q ss_pred cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|+++ .||||++..|+..|...|++|.+.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 57888654 689999999999999999999874
No 41
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.79 E-value=0.49 Score=43.20 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.1
Q ss_pred cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|++ -.||||++..|+..|...|++|.+.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5889985 5689999999999999999999773
No 42
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.61 E-value=0.45 Score=42.66 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEe
Q 018577 92 SKFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+.++|.|++.+ ||||++..|+..|. .|++|.+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 456899997764 79999999999999 99999774
No 43
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.46 E-value=0.67 Score=41.59 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=28.7
Q ss_pred CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.++|.|+++ .||||++..|+..|...|++|.+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468888876 579999999999999999999874
No 44
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=87.30 E-value=1.5 Score=37.81 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.++.+++-....+..+|+|.|-| ||||++.+|..++...|..+|.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~ 55 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEV 55 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 344555554323455799999975 8999999999999976655655
No 45
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=87.28 E-value=0.71 Score=44.35 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHcCCCC-----CCCcEEEEc---CCCCchHHHHHHHHHHH------HcCCCeEEe
Q 018577 75 FDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILR------AEGYSVGCY 126 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~-----~~~~vI~Vt---GTnGKtSTt~ml~~IL~------~~G~~vg~~ 126 (353)
..++.+..+.+..+.+. ...++|+|+ |--||||++..|+..|. ..|++|.+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 36788888877766543 457899999 56799999999999998 679999774
No 46
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=87.20 E-value=1 Score=40.93 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=32.5
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEc-----CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIA-----GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~Vt-----GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+++++..- .++|.|+ |-.||||++..|+..|...|++|.+.
T Consensus 23 ~~~~~r~~~~~------~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 23 LEELRRILSNK------NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHH------CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCC------CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 44566666542 2344444 56899999999999999999999874
No 47
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.68 E-value=1.2 Score=38.20 Aligned_cols=47 Identities=28% Similarity=0.306 Sum_probs=33.6
Q ss_pred HHHHHHHcC-CCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 80 MNRLMDRLG-NPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 80 ~~~~l~~lg-~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+++.+- .+..+..+|+|+|-+ ||||++.+|...|...|.++...
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 444444432 123345789999975 89999999999998888777553
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.52 E-value=0.62 Score=43.15 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=28.0
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHH-cCCCeEEec
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRA-EGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~-~G~~vg~~t 127 (353)
+..+|+|.|-| |||||+..|+..+.. .|++|.+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34577777754 899999999999985 899998753
No 49
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.42 E-value=0.7 Score=43.33 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=29.3
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.++|.|+|.+ |||||+..|+..|...|.+|.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45689999875 89999999999999999999764
No 50
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=84.99 E-value=0.91 Score=41.62 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=29.3
Q ss_pred CCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
...++|.|+| -.||||++.-|+..|.+.|++|.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3567888874 4689999999999999999999874
No 51
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=84.88 E-value=0.93 Score=43.14 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=30.8
Q ss_pred CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+.++|+|++. .||||++.-|+..|...|++|.+.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 345789999865 579999999999999999999874
No 52
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=84.41 E-value=0.91 Score=39.39 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|.|+ |-.||||++..|+..|...| +|.+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 56665 66799999999999999999 99773
No 53
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.49 E-value=1.4 Score=41.10 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
...+|.|+|-| |||||+..|+..|...|.+|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 34689999975 79999999999999999898763
No 54
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=82.14 E-value=1.8 Score=40.76 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=36.2
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+.+++.+-....+.++|+|+|. .||||++.-|...|...|++|++.
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 44555555333346688999996 689999999999999999999875
No 55
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=81.77 E-value=1.4 Score=41.14 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=28.8
Q ss_pred CCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..++|.|+ |--||||++.-++..|.+.|++|.+..
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 33566666 668899999999999999999998753
No 56
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.04 E-value=0.98 Score=38.21 Aligned_cols=33 Identities=36% Similarity=0.585 Sum_probs=23.0
Q ss_pred cCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 87 LGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 87 lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
+|++..+..+|+|+|. .||||++.+|+.. |+.+
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~ 35 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW----GYPV 35 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT----TCCE
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC----CCEE
Confidence 4677777889999996 6999999998874 6553
No 57
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=79.54 E-value=1.2 Score=42.13 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=27.6
Q ss_pred cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|++. .||||++.-|+..|...|+||.+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 57777754 689999999999999999999774
No 58
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=79.54 E-value=2.3 Score=35.67 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.4
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.|+|+|. .||||.+.+|+..|...|+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5888995 79999999999999999998754
No 59
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.42 E-value=2.3 Score=36.08 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=29.4
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.++|.|+|. .||||+...|...|...|++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 578999997 5899999999999998999998753
No 60
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=79.02 E-value=1.8 Score=39.80 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=27.0
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+..+|+|||. .||||++.+|+..|...|+++.++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 4568999997 6999999999999987777665543
No 61
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=78.40 E-value=1.6 Score=36.86 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=28.1
Q ss_pred cEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|.|.+ ||||+..+|...+...|+++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 678999974 79999999999999999998863
No 62
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.39 E-value=2.4 Score=38.99 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.8
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHHHHcC
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEG 120 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G 120 (353)
.+..+|+|+|. .||||++..|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 45578999996 789999999999998755
No 63
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=78.09 E-value=1.5 Score=39.12 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=26.3
Q ss_pred cEEEE--cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHI--AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~V--tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+| -|-.||||++..|+..|...|++|.+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 34444 456789999999999999999999874
No 64
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.17 E-value=4 Score=38.26 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=28.5
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+|++.|-| ||||+...|+..+...|.++.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 35688888865 79999999999999999888764
No 65
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=76.95 E-value=2.7 Score=39.66 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..++|.|+ |--||||++.-++..|...|++|.+..
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34666666 567899999999999999999998764
No 66
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=76.71 E-value=1.8 Score=39.19 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=26.8
Q ss_pred cEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|+|+ |-.||||++.-|+..|...|++|.+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 455554 56799999999999999999999874
No 67
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=76.66 E-value=1.6 Score=40.74 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=26.7
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.|.|+ |-.||||++..|+..|.+.|++|.+.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 344444 56899999999999999999999885
No 68
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=75.24 E-value=3.1 Score=39.00 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.+++.+.....+.++|+|+|-+ ||||+...|...+...|.++.+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34555554444567899999985 79999999999999889888764
No 69
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=75.21 E-value=7.6 Score=39.07 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.1
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|-.||||++.-++..|...|.+|.+.
T Consensus 335 ~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 335 KGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 345899999999999999999999876
No 70
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.02 E-value=3.5 Score=34.99 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.6
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.+..+|.|+|. .||||.+.+|+.-|...++.+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 34568999996 79999999999999988888744
No 71
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=74.95 E-value=3.7 Score=35.19 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=23.5
Q ss_pred EEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577 96 TVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 96 vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+|+|.|-| ||||+..+|+..+...|..++-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g 34 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEcC
Confidence 57777776 5999999999999877855433
No 72
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=74.80 E-value=2.8 Score=38.38 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=30.7
Q ss_pred CCCcEEEEcC----CCCchHHHHHHHHHHHHcCCCeEE
Q 018577 92 SKFKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 92 ~~~~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
...|.|-||| +=|||-|++-|..+|++.|++|-.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~ 58 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCccee
Confidence 4578999999 689999999999999999999865
No 73
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=74.58 E-value=3.7 Score=34.83 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+|.|+|- .||||.+..|+.-|...|+.+-.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3468999986 799999999999999989887544
No 74
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.46 E-value=4.2 Score=33.93 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=28.6
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+|.|+|- .||||.+..|+..|...|+++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3468999996 789999999999999989887553
No 75
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.33 E-value=3.7 Score=40.06 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=28.8
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHc-CCCeEEe
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE-GYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~-G~~vg~~ 126 (353)
+.++|.|+|- .|||||+.-|+..|... |++|.+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3467888764 68999999999999998 9999874
No 76
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=74.29 E-value=2.6 Score=38.45 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCcEEEEcC----CCCchHHHHHHHHHHHHcCCCeEE
Q 018577 93 KFKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
..|.|-||| +=|||-|++-|..+|++.|++|-.
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 468999999 469999999999999999999854
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=74.16 E-value=2.1 Score=37.83 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=21.6
Q ss_pred HHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHH
Q 018577 83 LMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 83 ~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
+|+.+...-.+..+|+|+|-| ||||++.+|+..|
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 444444433455789999985 8999999999988
No 78
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=74.00 E-value=7.1 Score=37.29 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=24.3
Q ss_pred CCCCchHHHHHHHHHHHHcCCCeEEecC
Q 018577 101 GTKGKGSTAAFLSSILRAEGYSVGCYTS 128 (353)
Q Consensus 101 GTnGKtSTt~ml~~IL~~~G~~vg~~tS 128 (353)
|-.||||++..++..|...|++|.+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4468999999999999999999987654
No 79
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=73.19 E-value=6.6 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=28.2
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+|.++|- .||||++..|+..+...|.+|.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457888875 579999999999999999999764
No 80
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.84 E-value=3.5 Score=34.24 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.2
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+|+|+|. .||||.+.+|+.-|...|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5788886 69999999999999888887643
No 81
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=71.71 E-value=1.4 Score=38.34 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.5
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-|-.||||++.-|+..|...|++|.+.
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 445679999999999999999999774
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.19 E-value=6 Score=36.52 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=27.2
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
..+|++.|-| ||||+...|+..+...+.++.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4588888876 8999999999999988878765
No 83
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=69.94 E-value=4.1 Score=38.50 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=27.6
Q ss_pred cEEEEc--CCCCchHHHHHHHHHHH--HcCCCeEEecC
Q 018577 95 KTVHIA--GTKGKGSTAAFLSSILR--AEGYSVGCYTS 128 (353)
Q Consensus 95 ~vI~Vt--GTnGKtSTt~ml~~IL~--~~G~~vg~~tS 128 (353)
+++.++ |-.||||++..++..|. ..|++|.+...
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 455444 56889999999999999 89999987643
No 84
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=69.69 E-value=5.7 Score=32.84 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=26.8
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
-.+|.++|. .||||++.+|+..|...|+++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~ 38 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 38 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 467899997 58999999999999888877643
No 85
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=69.54 E-value=2.8 Score=39.43 Aligned_cols=28 Identities=29% Similarity=0.190 Sum_probs=24.8
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 100 AGTKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 100 tGTnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
-|-.||||++.-++..|...|++|.+..
T Consensus 24 kGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp STTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3678999999999999999999998764
No 86
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.28 E-value=5.6 Score=39.67 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+.++|.|+|. .||||++.-|+..|...|++|.+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3568888886 6899999999999999999998743
No 87
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=68.70 E-value=3.3 Score=35.60 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=27.2
Q ss_pred EEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
|.+-|. .||||.+.+|+.-|++.|++|.+..-|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 556664 799999999999999999998765445
No 88
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=67.18 E-value=5 Score=33.19 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.4
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
++|.|+|. .||||.+..|+.-|...|+.+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 46778886 799999999999999888877543
No 89
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.92 E-value=7.9 Score=36.77 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=27.2
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
..+|++.|-| ||||+...|+..+...+.++.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 4588888876 8999999999999988877765
No 90
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=66.89 E-value=7.4 Score=36.39 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=35.9
Q ss_pred HHHHHHcCCCCCCCcEEEEcCCCC--chHHHHHHHHHHHHcCCCeEEe
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGTKG--KGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGTnG--KtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.+++.+.....+..+|+|.|-|| |||+...|...+...+.++.+.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 356666654445678999999875 9999999999998877787654
No 91
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=66.44 E-value=5.9 Score=37.38 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=26.9
Q ss_pred cEEEEc---CCCCchHHHHHHHHHHH--HcCCCeEEe
Q 018577 95 KTVHIA---GTKGKGSTAAFLSSILR--AEGYSVGCY 126 (353)
Q Consensus 95 ~vI~Vt---GTnGKtSTt~ml~~IL~--~~G~~vg~~ 126 (353)
++|.|+ |--||||++.-|+..|. +.|+||.+.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLv 54 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI 54 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 345554 67899999999999999 999999876
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=66.42 E-value=15 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=32.7
Q ss_pred HHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 81 ~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+.++..+... ....+.+.|- .|||+....+...+...|+++..+
T Consensus 25 ~~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 25 AELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp HHHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3445555544 4568889997 489999999999998888777554
No 93
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=65.69 E-value=4.2 Score=39.65 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 79 RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 79 r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
.+..++..+......+-+.|-+| .|||++...+...|...|.+..+.++|
T Consensus 33 av~~~~~~i~~~~~~~li~G~aG-TGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 33 AFNIVMKAIKEKKHHVTINGPAG-TGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp HHHHHHHHHHSSSCEEEEECCTT-SCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEEeCCC-CCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 34444444433322223334444 499999999998898888733333443
No 94
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=64.36 E-value=8.8 Score=38.24 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHcCCCCCCCcEEEEcCC------CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 83 LMDRLGNPHSKFKTVHIAGT------KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 83 ~l~~lg~p~~~~~vI~VtGT------nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+++++.. .++.++|.||.+ -|||||+.-|+..|.+.|.+|.+.
T Consensus 47 ~l~~~~~-~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 47 VYRRLKD-KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp HHHHTTT-SCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred Hhhhhhc-cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 3445532 345689999987 479999999999999999999663
No 95
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=64.22 E-value=6.3 Score=38.38 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=28.6
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
..+|.|+|- .||||++.-|+..|...|++|.+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357888774 6899999999999999999997754
No 96
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=63.28 E-value=11 Score=35.21 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=28.8
Q ss_pred HcCCC-CCCCcEEEEcCC--CCchHHHHHHHHHHHH--cCCCeEEe
Q 018577 86 RLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRA--EGYSVGCY 126 (353)
Q Consensus 86 ~lg~p-~~~~~vI~VtGT--nGKtSTt~ml~~IL~~--~G~~vg~~ 126 (353)
.++.+ .....+|+|+|. .||||++..|..+|.. .+.++++.
T Consensus 83 ~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 83 FLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp HHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred HhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 34554 344568999997 5799999999999974 23355543
No 97
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=63.25 E-value=4 Score=34.53 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|+|+|. .||||++.+|+. + |+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~ 28 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYV 28 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEE
Confidence 47899987 489999999988 5 6554
No 98
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=62.66 E-value=7.1 Score=39.29 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=27.5
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+++.++| --||||++..++..|.+.|++|.+.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlv 42 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEE
Confidence 45666655 4899999999999999999999774
No 99
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=62.60 E-value=4.1 Score=36.07 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRA 118 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~ 118 (353)
+..+|+|+|. .||||++.+|+..|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4568999997 7999999999987754
No 100
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.20 E-value=5.2 Score=32.66 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=19.8
Q ss_pred CCCCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 91 HSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 91 ~~~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+....+|.|+|. .||||++.+|+.-|
T Consensus 4 ~~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 4 HHHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ----CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccccceEEEECCCCCCHHHHHHHHHHHh
Confidence 345688999997 78999999998876
No 101
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.24 E-value=9.9 Score=37.85 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.5
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+..+|+|.|-| ||||+...|+.++...|.++.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 34588888876 7999999999999988877765
No 102
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=61.18 E-value=8.9 Score=35.37 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=23.6
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+++++.|+|-| ||||....|.... .|+++++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi 36 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVI 36 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEE
Confidence 57899999976 5888777666543 57888774
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=60.85 E-value=4.8 Score=34.22 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRA 118 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~ 118 (353)
+..+|+|+|-| ||||++.+|+..+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44689999975 699999999998863
No 104
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=60.63 E-value=10 Score=32.95 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=29.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
...|.+.|. .||||.+..|..-|...|+++....-|
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p 43 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC
Confidence 367889996 689999999999999999998654444
No 105
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=60.53 E-value=8.6 Score=35.20 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.++|+|+|- .||||++..|+..+...|.+|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l 131 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3468888885 57999999999999999989876
No 106
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=60.11 E-value=9.9 Score=33.76 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+..+|.|.|- .||||.+..|..-|...|++++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~ 60 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHIT 60 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeee
Confidence 3467888886 58999999999999999999444
No 107
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=59.52 E-value=8.9 Score=38.41 Aligned_cols=32 Identities=31% Similarity=0.573 Sum_probs=28.8
Q ss_pred CcEEEEcC----CCCchHHHHHHHHHHHHcCCCeEE
Q 018577 94 FKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 94 ~~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.|.|-||| +=|||-|++-|..+|+..|++|-.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~ 38 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTA 38 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 47899999 569999999999999999999855
No 108
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=58.35 E-value=5.9 Score=38.82 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEcCCCCchHH-HHHHHHHHHHc
Q 018577 96 TVHIAGTKGKGST-AAFLSSILRAE 119 (353)
Q Consensus 96 vI~VtGTnGKtST-t~ml~~IL~~~ 119 (353)
+|+|| |||||++ +++|..-|.+.
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHHh
Confidence 89999 9999999 89999999874
No 109
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=57.89 E-value=3.3 Score=35.20 Aligned_cols=34 Identities=35% Similarity=0.469 Sum_probs=26.9
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+|.|.|- .||||.+..|...|...|+++....-|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 4666664 699999999999999888888765544
No 110
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=57.80 E-value=12 Score=33.14 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.6
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.++|.|+|- .||||.+..|+.-|...|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~ 37 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIV 37 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 457888885 79999999999999988987653
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=57.30 E-value=14 Score=30.37 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHH-HcCCCeE
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVG 124 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~-~~G~~vg 124 (353)
++++++.+..+ +...+.+.|- .||||++..++..+. ..|+.+.
T Consensus 26 ~~~~~~~~~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~ 71 (180)
T 3ec2_A 26 IRVFVHNFNPE--EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY 71 (180)
T ss_dssp HHHHHHSCCGG--GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHhcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 33444444332 2467899986 579999999999987 6776653
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=57.27 E-value=14 Score=34.02 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+|+|.|-| ||||+...|+..+...|.++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 34688888865 79999999999999888888664
No 113
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=56.91 E-value=13 Score=32.29 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=27.2
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCC-CeEEecCC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGY-SVGCYTSP 129 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~-~vg~~tSp 129 (353)
+.|.+.|. .||||.+..|..-|...|+ .+.+...|
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep 41 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP 41 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC
Confidence 57888886 5799999999999999998 55433333
No 114
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=56.19 E-value=11 Score=31.59 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.4
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeE
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg 124 (353)
.+|.|+|. .||||.+..|+.-|...| ++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 57899996 899999999999998766 553
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=56.01 E-value=17 Score=31.08 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHH--HcCCCeEEec
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSILR--AEGYSVGCYT 127 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~IL~--~~G~~vg~~t 127 (353)
.+.+++.++|.-|+|-|+.++..+.+ .+|++|.+++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34578999999666666666655544 4899998876
No 116
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=54.92 E-value=8.7 Score=35.55 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHHHc-C-CCeEE
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILRAE-G-YSVGC 125 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~~~-G-~~vg~ 125 (353)
.+..+|+|.|-| ||||++.+|..++... | .++++
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~ 125 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDL 125 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEE
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEE
Confidence 455799999975 8999999999999864 3 34554
No 117
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=54.78 E-value=7.4 Score=33.31 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.8
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
....+|+|||- .||||++.+|+..| |+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l---g~~v 40 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY---GAHV 40 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc---CCEE
Confidence 34578999996 79999999998864 6544
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=54.25 E-value=14 Score=31.20 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
-.++.|.|-| ||||++..++..+...|.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4689999975 69999999997777667677554
No 119
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=53.93 E-value=7.3 Score=32.92 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=19.8
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|+|+|. .||||++.+|+. .|+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~~ 29 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVPL 29 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCcc
Confidence 47999997 589999999987 36543
No 120
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=53.74 E-value=12 Score=36.31 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=28.0
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..+|.|+|- .||||++..|+..|...|.+|.+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457888775 589999999999999999999774
No 121
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=53.13 E-value=9 Score=32.13 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.2
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
++|+|+|. .||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 38999997 69999999998876
No 122
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=53.02 E-value=8.2 Score=35.42 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHHH
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSILR 117 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL~ 117 (353)
.+..+|+|+|-| ||||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999975 69999999999987
No 123
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=52.99 E-value=8.3 Score=32.30 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.6
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHH
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
-.+|+|+|-| ||||+..+|...+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999986 7999999998875
No 124
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=52.93 E-value=5 Score=33.67 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.0
Q ss_pred cEEEEcCCC--CchHHHHHHHHHHHH
Q 018577 95 KTVHIAGTK--GKGSTAAFLSSILRA 118 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~~IL~~ 118 (353)
++|+|.|-| ||||+..+|...+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 468888876 699999999998863
No 125
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=52.67 E-value=9.8 Score=33.29 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=22.9
Q ss_pred CCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 91 HSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 91 ~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
+.....|++||. .||||++.+++. .|+.+
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 445778999997 789999998876 47665
No 126
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=52.40 E-value=18 Score=30.48 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
+..+|.|.|- .||||+..+|+..|...|..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~ 56 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLC 56 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceE
Confidence 3468999996 589999999999999778653
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=51.70 E-value=16 Score=32.07 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHH--HHHcCCCeEEec
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSI--LRAEGYSVGCYT 127 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~I--L~~~G~~vg~~t 127 (353)
.+-.++-|+|.-|+|-|+.++..+ +..+|.+|.+++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 345789999995555555555444 455788997764
No 128
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=50.55 E-value=17 Score=30.85 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=27.1
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHH-HcCCCeEEe
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~-~~G~~vg~~ 126 (353)
..+|.|.|. .||||.+..|+..|. ..|+++..+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 467889986 789999999999998 778776543
No 129
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=50.48 E-value=11 Score=30.45 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=18.5
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.+|.|+|. .||||++..|+.-|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47889997 68999999998766
No 130
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=50.35 E-value=36 Score=34.03 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCC-CCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 79 RMNRLMDRLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 79 r~~~~l~~lg~p-~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.+.+.+...-.| .....+|.++|. .||||++..|+.-|...|+++.+
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ 405 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTL 405 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 344555543322 233467888876 67999999999999988977654
No 131
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=50.09 E-value=17 Score=29.83 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.7
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~ 122 (353)
.+|.|+|. .||||.+..|+.-|...|++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 33 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 33 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcc
Confidence 57888886 79999999999999877743
No 132
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=49.99 E-value=9.8 Score=34.44 Aligned_cols=37 Identities=16% Similarity=0.419 Sum_probs=26.3
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLS 113 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~ 113 (353)
+++++.++..+|......+.|+|.|. .||||+...|.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~ 45 (315)
T 1jwy_B 7 INKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIV 45 (315)
T ss_dssp HHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHH
Confidence 34566666667765566788999995 79998776553
No 133
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=49.88 E-value=17 Score=35.96 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCC------CCchHHHHHHHHHHHHcCCCeEE
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGT------KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGT------nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
.+++-+ +++.. .++-+.|-||+- -|||||+-=|.+.|...|+++..
T Consensus 29 v~~~~l----~~~~~-~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~ 80 (543)
T 3do6_A 29 IDHRFL----KSLEN-HEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIV 80 (543)
T ss_dssp ECTTHH----HHTTT-SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ecHHHh----hhhhc-CCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEE
Confidence 455544 34432 235688999997 69999999999999999998754
No 134
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=49.46 E-value=17 Score=31.70 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=26.2
Q ss_pred CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
..++.++| -.||||++.-|+..|. .|++|.+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 45566655 5899999999999999 99999775
No 135
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=49.37 E-value=12 Score=31.45 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.5
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
...+|+|+|-| ||||++.+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999975 6999999999887
No 136
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.99 E-value=18 Score=32.13 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=26.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCCeEE-ecCC
Q 018577 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGC-YTSP 129 (353)
Q Consensus 97 I~VtGTnGKtSTt~ml~~IL~~~G~~vg~-~tSp 129 (353)
+.-.|-.||||++.-++.-|...|++|.+ +..|
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45567799999999999999999999844 3434
No 137
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=48.22 E-value=17 Score=31.86 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=28.9
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHH-cCCCeEE
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRA-EGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~-~G~~vg~ 125 (353)
+...|.|.|. .||||.+..|+.-|.. .|+++..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3468999996 6899999999999999 9998876
No 138
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=47.85 E-value=23 Score=31.13 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=28.5
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHc----CCCeEEecCC
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAE----GYSVGCYTSP 129 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~----G~~vg~~tSp 129 (353)
+...|.|.|- .||||.+..|+.-|... |+++.+..-|
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 4568999996 57999999999999988 9988554334
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=47.24 E-value=18 Score=32.38 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEcCC--CCchHHHHHHHHHHHHcCC
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILRAEGY 121 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~~~G~ 121 (353)
.|-+.|- .|||+++..++..+...++
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4555553 4999999999999988765
No 140
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=47.13 E-value=9.3 Score=32.99 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.6
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+.|.|-|- .||||.+.+|+.-|. .|+++.+..=|
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP 38 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREP 38 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCC
Confidence 46777775 799999999999996 48888654444
No 141
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=47.00 E-value=32 Score=34.21 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHcCCC-CCCCcEEEEcCC--CCchHHHHHHHHHHHH-cC
Q 018577 74 GFDLGRMNRLMDRLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRA-EG 120 (353)
Q Consensus 74 ~~~l~r~~~~l~~lg~p-~~~~~vI~VtGT--nGKtSTt~ml~~IL~~-~G 120 (353)
.+.-..+-+++...-.| .++..+|.++|- .||||++..|+.-|.. .|
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g 424 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGG 424 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCS
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhc
Confidence 34444455555554322 334578999995 6999999999999986 54
No 142
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=46.82 E-value=36 Score=31.50 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHHcCC---CCCCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 80 MNRLMDRLGN---PHSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 80 ~~~~l~~lg~---p~~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+|+.+-+.|. .....|||.| .|-.|||-++.+|+..|+. ++++..
T Consensus 19 ~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~il 70 (315)
T 4ehx_A 19 FRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCIL 70 (315)
T ss_dssp HHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEE
T ss_pred HHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEE
Confidence 4455544442 2335789998 7999999999999999975 456543
No 143
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.82 E-value=14 Score=30.99 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.1
Q ss_pred EEEEcCCCC--chHHHHHHHHHHH
Q 018577 96 TVHIAGTKG--KGSTAAFLSSILR 117 (353)
Q Consensus 96 vI~VtGTnG--KtSTt~ml~~IL~ 117 (353)
.++|.|-|| |||+..+|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999876 9999999999984
No 144
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=45.80 E-value=11 Score=34.95 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
|..++..+..-|. ..+|.+-| +.||||+...|..-|...|++|..+..|.
T Consensus 73 L~~lQ~~~~~~~~----~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt 124 (304)
T 3czq_A 73 LVKVQFWMQATGK----RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT 124 (304)
T ss_dssp HHHHHHHHHHHCC----CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC
T ss_pred HHHHHHHHHHcCC----CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC
Confidence 4455555555553 35788888 68999999999999999999998876664
No 145
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=45.11 E-value=13 Score=31.14 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=19.8
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.+.++|.|+|. .||||.+..|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999996 68999999887654
No 146
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=44.53 E-value=19 Score=29.35 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.+..+|+|+|- .||||++.+|+..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34578999997 68999999998876
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=44.39 E-value=11 Score=32.50 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=15.6
Q ss_pred CCcEEEEcCCC--CchHHHHHHH-HHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLS-SILR 117 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~-~IL~ 117 (353)
+-.+|+|+|-| ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34689999987 6999999998 7764
No 148
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=44.32 E-value=21 Score=30.91 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=25.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH--cCCCeEEe
Q 018577 95 KTVHIAGTKGKGSTAAFLSSILRA--EGYSVGCY 126 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~IL~~--~G~~vg~~ 126 (353)
..|+|-+-||||.|++.+...+++ +|++|.++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457777778888888888888886 57899875
No 149
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=43.92 E-value=36 Score=31.71 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEec
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
...+|+|+|.+ ||||+...|...+...|.++++..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 46899999984 799999999999988888887753
No 150
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=43.85 E-value=15 Score=31.24 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=18.8
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.+|+|+|. .||||++.+|+..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57999997 56999999998766
No 151
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=43.84 E-value=37 Score=29.72 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=28.1
Q ss_pred CCCCCcEEEEcCCCCchHHHHHHHHHHH--HcCCCeEEec
Q 018577 90 PHSKFKTVHIAGTKGKGSTAAFLSSILR--AEGYSVGCYT 127 (353)
Q Consensus 90 p~~~~~vI~VtGTnGKtSTt~ml~~IL~--~~G~~vg~~t 127 (353)
+..+-.+..++|+-|||-|+.+|..+.+ .+|.+|.++.
T Consensus 24 ~~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 24 INQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CCCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3445578889999777777777776655 5788998876
No 152
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=43.84 E-value=11 Score=31.45 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.5
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHH
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
..+|+|+|-+ ||||++.+|...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999975 8999999998877
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=43.71 E-value=17 Score=30.14 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.2
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSI 115 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~I 115 (353)
+.+.|.|+|. .||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999997 5799999999876
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=43.18 E-value=12 Score=30.47 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=19.0
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
.+|+|+|. .||||++.+|+..|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899997 589999999988763
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=42.70 E-value=25 Score=31.45 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred cCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHc-CCCeEEe
Q 018577 87 LGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAE-GYSVGCY 126 (353)
Q Consensus 87 lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~-G~~vg~~ 126 (353)
+|.+ .-.+++|+|-| ||||.+..|+..+... |.++..+
T Consensus 30 ~~l~--~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 30 LGAR--GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CSBC--TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred cCCC--CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4544 34678888875 8999999999888765 7777654
No 156
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=42.35 E-value=14 Score=30.48 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.6
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
++|.|+|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 45888886 89999999998876
No 157
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=41.67 E-value=18 Score=28.85 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=19.3
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
++|.|+|- .||||.+..| +..|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~ 28 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKV 28 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcE
Confidence 47888886 6899999888 5667654
No 158
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=41.53 E-value=27 Score=30.43 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=26.7
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+...|.|.|- .||||.+..|+..|.. |+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 3468889997 6799999999999998 887744
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=41.34 E-value=20 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=19.7
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+.+.|.|.|- .||||++..|+..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3467888886 48999999999887
No 160
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=40.61 E-value=16 Score=32.02 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+.++.+.+.....+...|.|+|- .||||.+.+|+.-+
T Consensus 15 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 15 LNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444443222334467899996 68999999998665
No 161
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=39.92 E-value=18 Score=29.26 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.7
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
++|.|+|. .||||.+.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888886 79999999999876
No 162
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=39.45 E-value=20 Score=29.77 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=22.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeE
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVG 124 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg 124 (353)
...|.|+|- .||||.+.+|+.-| .|+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~ 34 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIK 34 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceE
Confidence 357899996 79999999998877 356553
No 163
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=39.32 E-value=59 Score=32.64 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=25.8
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcC-CCeEE
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEG-YSVGC 125 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G-~~vg~ 125 (353)
..+|.++|- .||||++..|+..|...| +++..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~ 430 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSL 430 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 357888874 679999999999999877 66543
No 164
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=39.31 E-value=19 Score=29.68 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=18.9
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.++|.|+|- .||||++.+|+.-|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888885 69999999998866
No 165
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=39.18 E-value=22 Score=30.72 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=19.6
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
...+|+|+|.+ ||||++.+|+..|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999975 7999999998765
No 166
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=38.82 E-value=15 Score=29.93 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=16.5
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
..+|.|+|. .||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999997 78999999987655
No 167
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=38.81 E-value=37 Score=30.27 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=26.3
Q ss_pred HHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHc
Q 018577 83 LMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAE 119 (353)
Q Consensus 83 ~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~ 119 (353)
+++.+. -.+-.+|+|+|-| ||||+..+|...+...
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 455554 2345689999975 8999999999998764
No 168
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=38.76 E-value=21 Score=35.77 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=20.8
Q ss_pred CCCCCCcEEEEcCCCCchHHH-HHHHHHHHHcC
Q 018577 89 NPHSKFKTVHIAGTKGKGSTA-AFLSSILRAEG 120 (353)
Q Consensus 89 ~p~~~~~vI~VtGTnGKtSTt-~ml~~IL~~~G 120 (353)
.+...+-|+|.+|| |||+|. .-++.++...|
T Consensus 20 ~~~~~~lV~a~aGs-GKT~~l~~ri~~l~~~~~ 51 (647)
T 3lfu_A 20 APRSNLLVLAGAGS-GKTRVLVHRIAWLMSVEN 51 (647)
T ss_dssp CCSSCEEEEECTTS-CHHHHHHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCC-CHHHHHHHHHHHHHHhCC
Confidence 34445567788887 999884 55667776644
No 169
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=38.17 E-value=17 Score=32.74 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.3
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
+..+|+|+|. .||||++.+|+. .|+.+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~----lg~~~ 102 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN----LGAYI 102 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH----HTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 3568999997 699999999984 36654
No 170
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=38.06 E-value=32 Score=28.86 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=20.9
Q ss_pred cEEEEcCCCCchHHHHHHHH--HHHHcCCCeEEec
Q 018577 95 KTVHIAGTKGKGSTAAFLSS--ILRAEGYSVGCYT 127 (353)
Q Consensus 95 ~vI~VtGTnGKtSTt~ml~~--IL~~~G~~vg~~t 127 (353)
+++.++|..|+|-|+.++.. -+...|.++.+++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57889998655555554433 3445788887653
No 171
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=38.01 E-value=22 Score=29.05 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.3
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.++|.|+|. .||||++..|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999997 69999999998766
No 172
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=37.75 E-value=24 Score=29.96 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=20.1
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|+|+|. .||||++.+|+. .|+.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~----lg~~~ 31 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD----LGINV 31 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cCCEE
Confidence 58999997 699999999876 36643
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=37.25 E-value=29 Score=28.97 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
..|.|+|. .||||.+..|+.-|
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47889986 78999999998876
No 174
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=37.20 E-value=17 Score=31.12 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=16.1
Q ss_pred EEEEcCC--CCchHHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
.|.|.|. .||||.+..|+.-|.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 3555553 499999999988764
No 175
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=37.05 E-value=22 Score=28.52 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.9
Q ss_pred EEEEcCC--CCchHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.|.|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5788886 79999999999876
No 176
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=36.66 E-value=20 Score=29.68 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
++|.|+|. .||||.+.+|+.-|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888886 69999999998876
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=36.56 E-value=24 Score=29.93 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.4
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILR 117 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~ 117 (353)
+.++|+|.|-+ ||||++.+|...+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35689999986 69999999987764
No 178
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=36.54 E-value=65 Score=26.61 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=25.2
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.|.+.|- .|||+.+..++.-+...|+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 56778886 58999999999999888877654
No 179
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=36.28 E-value=24 Score=29.18 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=18.1
Q ss_pred EEEEcCC--CCchHHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
.|.|.|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5778886 689999999998774
No 180
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=36.24 E-value=24 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.3
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.+|.|+|. .||||.+..|+.-|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899997 68999999988765
No 181
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.51 E-value=28 Score=31.75 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=22.2
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHc---CCCeE
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAE---GYSVG 124 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~---G~~vg 124 (353)
...+.|.|- .||||++..+...+... +..+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 80 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 345667774 58999999998888765 55443
No 182
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=34.00 E-value=53 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHc
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAE 119 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~ 119 (353)
.-.+|+|+|-| ||||+...|...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 34689999975 6999999999998864
No 183
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=33.67 E-value=28 Score=29.05 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=19.5
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.++|.|+|- .||||++..|+..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467999997 57999999998877
No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=33.39 E-value=38 Score=31.84 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=24.2
Q ss_pred cEEEEcCCC--CchHHHHHHHHHHHHc-CCCeEE
Q 018577 95 KTVHIAGTK--GKGSTAAFLSSILRAE-GYSVGC 125 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~~IL~~~-G~~vg~ 125 (353)
.+|+|+|-| ||||+...|...+... |.++..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 489999986 5999999999888865 545543
No 185
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=32.71 E-value=25 Score=29.70 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.5
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILR 117 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~ 117 (353)
+-.+++|.|-| ||||+..+|..++.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999987 79999999999885
No 186
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=32.70 E-value=1.3e+02 Score=28.14 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=32.9
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCCCCchH---HHHHHHHHHHHcCCCeEEe
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGS---TAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtS---Tt~ml~~IL~~~G~~vg~~ 126 (353)
++++.+.++.+|. -+++-||+.+=... ...-+...|+++|+.+..|
T Consensus 21 ~~~l~~~l~~~g~----~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~ 69 (387)
T 3bfj_A 21 ISVVGERCQLLGG----KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIF 69 (387)
T ss_dssp GGGHHHHHHHTTC----SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCC----CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEE
Confidence 6778888888863 37888888664444 6777788888899887655
No 187
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=32.44 E-value=49 Score=30.35 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=26.9
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHc
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAE 119 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~ 119 (353)
++.+...++..-.. ...+.|.|.|- .|||+++..++.-+...
T Consensus 29 ~~~l~~~l~~~~~~-~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 29 LRDAAIAIRYFVKN-EVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHHHHHTT-CCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45555555553111 22346777774 58999999998888665
No 188
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=31.65 E-value=24 Score=29.67 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
...+|+|+|. .||||++.+|+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999995 68999999988765
No 189
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=31.29 E-value=1.2e+02 Score=21.17 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCe
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~v 123 (353)
..++.+...++.++.+ ++.++|.+..+ | ..+...+..|++.||+-
T Consensus 24 ip~~~l~~~~~~l~~~-~~~~ivv~C~~-g--~rs~~aa~~L~~~G~~~ 68 (85)
T 2jtq_A 24 IPLKEVKERIATAVPD-KNDTVKVYCNA-G--RQSGQAKEILSEMGYTH 68 (85)
T ss_dssp CCHHHHHHHHHHHCCC-TTSEEEEEESS-S--HHHHHHHHHHHHTTCSS
T ss_pred cCHHHHHHHHHHhCCC-CCCcEEEEcCC-C--chHHHHHHHHHHcCCCC
Confidence 5577888888888643 34567777754 4 45677889999999963
No 190
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=31.06 E-value=31 Score=28.16 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=18.2
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
..|.++|. .||||.+.+|+.-|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 46888886 58999999998766
No 191
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=30.90 E-value=29 Score=31.74 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=19.6
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHc
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAE 119 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~ 119 (353)
...+.|.|- .|||+++..+..-+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 345777775 58999999998888654
No 192
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=30.80 E-value=28 Score=30.90 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=19.4
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV 123 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v 123 (353)
.+|++||. .||||++.+|..- .|+.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 47999996 7899998887543 46553
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=30.70 E-value=34 Score=27.09 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=26.0
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCC
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~ 122 (353)
+.++.+.++.+..... -|.+.|- .|||+++..|.......+..
T Consensus 10 ~~~~~~~~~~~a~~~~---~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 10 INQYRRRLQQLSETDI---AVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp HHHHHHHHHHHTTCCS---CEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred HHHHHHHHHHHhCCCC---CEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 5556666665543322 2455553 58999999888765544443
No 194
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=30.18 E-value=34 Score=33.88 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=38.9
Q ss_pred hHHHHHHHHH-cCCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577 77 LGRMNRLMDR-LGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH 130 (353)
Q Consensus 77 l~r~~~~l~~-lg~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~ 130 (353)
|..++..+.. -+. ..+|.+-| +.|||++...|..-|...|++|..+..|.
T Consensus 29 L~~lQ~~~~~~~~~----~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt 81 (500)
T 3czp_A 29 LLEAQFELKQQARF----PVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPS 81 (500)
T ss_dssp HHHHHHHHHHHCCC----CEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCC
T ss_pred HHHHHHHHHhcCCC----CEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCC
Confidence 5556666655 443 25677877 69999999999999999999998887764
No 195
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=30.07 E-value=38 Score=27.54 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.3
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHH
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+.+.|.|+|. .||||.+..|+.-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3467888886 68999999998776
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=29.92 E-value=38 Score=28.68 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=18.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
...|.|.|- .||||.+..|+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356888886 68999999998876
No 197
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=29.84 E-value=31 Score=28.07 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.0
Q ss_pred cEEEEcCC--CCchHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35888886 68999999998776
No 198
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.81 E-value=31 Score=29.09 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.9
Q ss_pred cEEEEcCCC--CchHHHHHHHHHHH
Q 018577 95 KTVHIAGTK--GKGSTAAFLSSILR 117 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~~IL~ 117 (353)
+.++|.|-| ||||+..+|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467888865 89999999988774
No 199
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=29.40 E-value=30 Score=28.47 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.3
Q ss_pred cEEEEcCCC--CchHHHHHHHH
Q 018577 95 KTVHIAGTK--GKGSTAAFLSS 114 (353)
Q Consensus 95 ~vI~VtGTn--GKtSTt~ml~~ 114 (353)
.+|+|.|-| ||||+..+|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 468888875 79999999975
No 200
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=29.18 E-value=1.9e+02 Score=25.22 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 78 GRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 78 ~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
+-+...++.+| .+.|+|-+|.+ +.+..+...-|.+.|+.|....+.
T Consensus 106 ~A~~~al~~~g-----~~rvglltpy~-~~~~~~~~~~l~~~Giev~~~~~~ 151 (240)
T 3ixl_A 106 TAVLNGLRALG-----VRRVALATAYI-DDVNERLAAFLAEESLVPTGCRSL 151 (240)
T ss_dssp HHHHHHHHHTT-----CSEEEEEESSC-HHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHhC-----CCEEEEEeCCh-HHHHHHHHHHHHHCCCEEeccccC
Confidence 34445555554 46789988855 333567788888899988665443
No 201
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.03 E-value=30 Score=28.05 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=19.1
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
++|.|+|- .||||++..|+.-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57888886 799999999988764
No 202
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=28.86 E-value=35 Score=27.98 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=20.9
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHHH
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
.+-.++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999986 5999999999988
No 203
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.58 E-value=76 Score=25.18 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=28.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 97 I~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
++-.|.-+=.-=..+++.+|+..|++|.. - |...+++++.+..
T Consensus 8 la~~~~d~HdiG~~~v~~~l~~~G~~Vi~---------------l--G~~~p~e~~v~~a 50 (137)
T 1ccw_A 8 LGVIGSDCHAVGNKILDHAFTNAGFNVVN---------------I--GVLSPQELFIKAA 50 (137)
T ss_dssp EEEETTCCCCHHHHHHHHHHHHTTCEEEE---------------E--EEEECHHHHHHHH
T ss_pred EEeCCCchhHHHHHHHHHHHHHCCCEEEE---------------C--CCCCCHHHHHHHH
Confidence 33334434444457999999999999853 1 6778887776554
No 204
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=27.94 E-value=33 Score=31.49 Aligned_cols=53 Identities=15% Similarity=0.316 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcCCCCCCCc-EEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 77 LGRMNRLMDRLGNPHSKFK-TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~-vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
|..++..|...|.-..+.+ +|.+-| +.|||+|...|..-|...|++|..+..|
T Consensus 57 L~~lQ~~l~~~~~~~~~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~P 112 (289)
T 3rhf_A 57 LAELQEKLFAEGKFGNPKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAP 112 (289)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSC
T ss_pred HHHHHHHHHhcCCccCCCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCC
Confidence 5556666655552111233 566666 7999999999999999999999877655
No 205
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=27.93 E-value=46 Score=30.61 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=29.7
Q ss_pred HHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577 82 RLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 82 ~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
.+|+.+..--.+-.+++|.|-| ||||...+|..++ .| ++..|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G-~I~~~ 157 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GG-SVLSF 157 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TC-EEECG
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--Cc-eEEEE
Confidence 4566554434456789999975 6999999999999 56 44333
No 206
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=27.90 E-value=36 Score=27.84 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=18.7
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
..+|.|+|. .||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357888885 79999999998766
No 207
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=27.64 E-value=1.3e+02 Score=27.30 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=28.3
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+..+-.++ -|.+.. .++.|+|- .|||+.+.-++.-....|.+|..|
T Consensus 55 ~~~LD~~l--gGl~~G--~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 55 FTELDRMT--YGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp CHHHHHHH--SSBCTT--CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHhhc--CCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 44444444 455433 56777775 788888776665555567666654
No 208
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=27.61 E-value=68 Score=32.75 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHcCCCC-CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 85 DRLGNPH-SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 85 ~~lg~p~-~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.+|.+. .+..+|.++|. .||||++..|+.-|.+.|+++..
T Consensus 42 ~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~ 85 (630)
T 1x6v_B 42 QVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 85 (630)
T ss_dssp HHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 4466422 24568999996 89999999999999988987644
No 209
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=27.49 E-value=1.2e+02 Score=29.22 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=28.2
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEec
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+..+-+++. |.+.. .+|.|+| ..|||+.+.-++.-....|.+|..|+
T Consensus 184 ~~~LD~~lg--Gl~~G--~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMTY--GYKRR--NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHHS--SBCSS--CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHhhcC--CCCCC--cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 444444442 65544 4566666 57899887666555544588887653
No 210
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=27.24 E-value=55 Score=31.46 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
.-.+|+|+|-| |||||...|...+....-++.+.-.|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 44689999975 79999999888886544455444333
No 211
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.90 E-value=1.1e+02 Score=25.09 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=29.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577 97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156 (353)
Q Consensus 97 I~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~ 156 (353)
++..|..+=.-=..+++.+|+..|++|.. +|...+.+++.+.+
T Consensus 23 la~~~gd~HdiG~~~va~~l~~~G~eVi~-----------------lG~~~p~e~lv~aa 65 (161)
T 2yxb_A 23 VAKMGLDGHDRGAKVVARALRDAGFEVVY-----------------TGLRQTPEQVAMAA 65 (161)
T ss_dssp EEEESSSSCCHHHHHHHHHHHHTTCEEEC-----------------CCSBCCHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHCCCEEEE-----------------CCCCCCHHHHHHHH
Confidence 34345555555668999999999999842 27778877765543
No 212
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=26.86 E-value=1.2e+02 Score=25.17 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=27.3
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
.+.|.|.|- .|||+++..++.-+...|+++....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 467888885 6899999999999988888775543
No 213
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=26.65 E-value=32 Score=29.54 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.8
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
+-.+++|.|-| ||||+..+|...+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34678999964 7999999999977
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=26.59 E-value=47 Score=28.77 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHH
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
.|+.-.+...+.++. +..+|+|.|-| ||||.+.+|+.-|
T Consensus 11 ~~~~~~~~~~~~~~~---~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 11 VDLGTENLYFQSMAS---KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp ------------------CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhcC---CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456666666666654 24689999975 6999998888665
No 215
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=26.43 E-value=1.4e+02 Score=27.75 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=29.8
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT 127 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t 127 (353)
+..+-+++. |.+.. .+|.|+|- .|||+.+.-++.-+...|.+|.+|+
T Consensus 33 ~~~LD~~~g--Gl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 33 FVQLDNYTS--GFNKG--SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CHHHHHHHC--SBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHhc--CCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 444444442 55433 46777774 6799988777776666788887653
No 216
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.13 E-value=47 Score=27.00 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=18.6
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.+.|.++|- .||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778884 79999999998776
No 217
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=24.80 E-value=1.3e+02 Score=26.88 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=28.0
Q ss_pred HHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577 85 DRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 85 ~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
+.+..|......+.+.|- .|||+++..++.-+...|.++..
T Consensus 28 ~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~ 70 (324)
T 1l8q_A 28 EALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY 70 (324)
T ss_dssp HHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 333344334456777775 57999999999988877766643
No 218
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=24.59 E-value=40 Score=29.02 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCC--CchHHHHHHHHH
Q 018577 92 SKFKTVHIAGTK--GKGSTAAFLSSI 115 (353)
Q Consensus 92 ~~~~vI~VtGTn--GKtSTt~ml~~I 115 (353)
.+..+|+|.|-+ ||||.+.+|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 455789999975 699988888775
No 219
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=24.42 E-value=57 Score=28.81 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCC-CCCCCcEEEEcCC--CCchHHHHHH
Q 018577 78 GRMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFL 112 (353)
Q Consensus 78 ~r~~~~l~~lg~-p~~~~~vI~VtGT--nGKtSTt~ml 112 (353)
+++...|..+|. +....+.|+|.|. .||||....|
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l 46 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENF 46 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHH
Confidence 334444555553 3445677888884 7899876554
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=23.88 E-value=47 Score=29.08 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.1
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHH
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSIL 116 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL 116 (353)
+..+|+|+|-+ ||||++.+|+.-|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999974 7999999998544
No 221
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=23.87 E-value=3.8e+02 Score=23.98 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=29.6
Q ss_pred CCCcEEEEcCCCCch--HHHHHHHHHHHHcC-CCeEEecCC
Q 018577 92 SKFKTVHIAGTKGKG--STAAFLSSILRAEG-YSVGCYTSP 129 (353)
Q Consensus 92 ~~~~vI~VtGTnGKt--STt~ml~~IL~~~G-~~vg~~tSp 129 (353)
++++++.|+|+++=- ..+.+|..+|++.| +.|-...+|
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 467899999988763 55589999999999 887665553
No 222
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=23.81 E-value=79 Score=27.52 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=20.4
Q ss_pred CCCcEEEEcCC--CCchHHHHHHHHHHH
Q 018577 92 SKFKTVHIAGT--KGKGSTAAFLSSILR 117 (353)
Q Consensus 92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~ 117 (353)
....+|.++|- .||||++..|+..|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34568899996 689999999987764
No 223
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=23.74 E-value=41 Score=27.63 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=19.4
Q ss_pred CcEEEEcCCC--CchHHHHHHHHHHH
Q 018577 94 FKTVHIAGTK--GKGSTAAFLSSILR 117 (353)
Q Consensus 94 ~~vI~VtGTn--GKtSTt~ml~~IL~ 117 (353)
-++|+|.|-+ ||||+..+|...+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999965 79999999888764
No 224
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=23.15 E-value=52 Score=27.56 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.5
Q ss_pred EEEEcCC--CCchHHHHHHHHHH
Q 018577 96 TVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 96 vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.|.|+|- .||||++.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3677774 68999999997655
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=22.97 E-value=56 Score=28.44 Aligned_cols=43 Identities=21% Similarity=0.072 Sum_probs=26.2
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCC
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYS 122 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~ 122 (353)
+.++.+.++.+... ...|.|.|- .|||+++..|...+...+.+
T Consensus 15 ~~~~~~~~~~~~~~---~~~vll~G~~GtGKt~la~~i~~~~~~~~~~ 59 (265)
T 2bjv_A 15 FLEVLEQVSHLAPL---DKPVLIIGERGTGKELIASRLHYLSSRWQGP 59 (265)
T ss_dssp HHHHHHHHHHHTTS---CSCEEEECCTTSCHHHHHHHHHHTSTTTTSC
T ss_pred HHHHHHHHHHHhCC---CCCEEEECCCCCcHHHHHHHHHHhcCccCCC
Confidence 44455555554432 234667775 58999999988776554443
No 226
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=22.94 E-value=70 Score=31.65 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcC
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEG 120 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G 120 (353)
..+-+..+++.+.....+.-+++=|| .|||-++..+..-|...+
T Consensus 183 Q~~ai~~~~~~~~~~~~~~ll~~~TG-sGKT~~~~~~~~~l~~~~ 226 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGKKRSLITMATG-TGKTVVAFQISWKLWSAR 226 (590)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTT-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCceEEEecCC-CChHHHHHHHHHHHHhcc
Confidence 34567777776644333334455565 499999766665555443
No 227
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=22.54 E-value=93 Score=27.55 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHH--cCCCeEEec
Q 018577 94 FKTVHIAGTKGKGSTAAFLSSILRA--EGYSVGCYT 127 (353)
Q Consensus 94 ~~vI~VtGTnGKtSTt~ml~~IL~~--~G~~vg~~t 127 (353)
..+.-++|.-|||-|+++|..+.+. +|++|.++.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4688899998888888888887764 677888776
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=22.48 E-value=42 Score=26.50 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=20.4
Q ss_pred hHHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHH
Q 018577 77 LGRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSI 115 (353)
Q Consensus 77 l~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~I 115 (353)
+.++++.++.+...... |.+.|- .|||+++..|...
T Consensus 13 ~~~l~~~~~~~~~~~~~---vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 13 IQEMNREVEAAAKRTSP---VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHHHTCSSC---EEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHHHhCCCCc---EEEECCCCccHHHHHHHHHHh
Confidence 45555555554432222 455554 4898888777653
No 229
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=22.33 E-value=50 Score=26.46 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.4
Q ss_pred cEEEEcCC--CCchHHHHHHHH
Q 018577 95 KTVHIAGT--KGKGSTAAFLSS 114 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~ 114 (353)
++|.|.|. .||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 46888886 689999998887
No 230
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=22.21 E-value=32 Score=30.59 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=19.3
Q ss_pred CcEEEEcCC--CCchHHHHHHHHHH
Q 018577 94 FKTVHIAGT--KGKGSTAAFLSSIL 116 (353)
Q Consensus 94 ~~vI~VtGT--nGKtSTt~ml~~IL 116 (353)
.++|+|+|- .||||++.+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 357888886 58999999999877
No 231
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=21.75 E-value=58 Score=30.47 Aligned_cols=30 Identities=27% Similarity=0.154 Sum_probs=21.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577 96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~ 126 (353)
+++-+| .|||++..++...+...|.++..+
T Consensus 40 i~G~~G-~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 40 ILAKPG-AGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp EECCTT-SSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEcCCC-CCHHHHHHHHHHHHHHCCCEEEEE
Confidence 344444 689999988888777888777554
No 232
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=21.60 E-value=3.7e+02 Score=25.79 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=51.4
Q ss_pred HHHHHHHHcCC----CC-CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHH
Q 018577 79 RMNRLMDRLGN----PH-SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN 153 (353)
Q Consensus 79 r~~~~l~~lg~----p~-~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~ 153 (353)
++.+.|+.++. +. ...++|.+.=..+..-...-+...|.+.|.-+..++.|........+++. ++...+.+++.
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRis-v~~~~t~edid 431 (502)
T 3hbx_A 353 VLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVV-IREDFSRTLAE 431 (502)
T ss_dssp HHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEE-CCTTCCHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEE-eCCCCCHHHHH
Confidence 34555555551 11 34566665422222223345677778889877666666433333444443 35677888988
Q ss_pred HHHHHHHHHHHHHHh
Q 018577 154 CLFHKIKGVLDEAIR 168 (353)
Q Consensus 154 ~~~~~i~~~~~~~~~ 168 (353)
.+++.++..++.+.+
T Consensus 432 ~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 432 RLVIDIEKVMRELDE 446 (502)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888877766543
No 233
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=21.33 E-value=2.1e+02 Score=22.30 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHH
Q 018577 78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRA 118 (353)
Q Consensus 78 ~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~ 118 (353)
+.++++.+.+... ..+.|.|+|- .|||+++..++.-+..
T Consensus 29 ~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 29 EEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3466666666542 2345777885 7999999999888876
No 234
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=21.21 E-value=44 Score=27.20 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.5
Q ss_pred EEEEcCCC--CchHHHHHHHHHHH
Q 018577 96 TVHIAGTK--GKGSTAAFLSSILR 117 (353)
Q Consensus 96 vI~VtGTn--GKtSTt~ml~~IL~ 117 (353)
+.+|+|-| ||||+...|..+|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 78899977 59999998888875
No 235
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=21.21 E-value=99 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.050 Sum_probs=22.0
Q ss_pred CCcEEEEcCCC--CchHHHHHHHHHHH-HcCCCeEE
Q 018577 93 KFKTVHIAGTK--GKGSTAAFLSSILR-AEGYSVGC 125 (353)
Q Consensus 93 ~~~vI~VtGTn--GKtSTt~ml~~IL~-~~G~~vg~ 125 (353)
+-.+++|.|-| ||||+...|..... ..+..+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~ 64 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVF 64 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 44789999986 79999988884222 33444433
No 236
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=20.97 E-value=96 Score=28.83 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577 93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP 129 (353)
Q Consensus 93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp 129 (353)
.-.++.|.|- .||||.+..+..-+...|.++.+++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3467888886 589999888877777778888766554
No 237
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=20.66 E-value=1.4e+02 Score=22.72 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577 75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGC 125 (353)
Q Consensus 75 ~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~ 125 (353)
..++.+...+..+ .++-++|.+.. .|..+.+...+.+|+..||++..
T Consensus 56 ip~~~l~~~~~~l---~~~~~ivvyC~-~g~r~~s~~a~~~L~~~G~~v~~ 102 (124)
T 3flh_A 56 MPAKDLATRIGEL---DPAKTYVVYDW-TGGTTLGKTALLVLLSAGFEAYE 102 (124)
T ss_dssp CCHHHHHHHGGGS---CTTSEEEEECS-SSSCSHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHhcC---CCCCeEEEEeC-CCCchHHHHHHHHHHHcCCeEEE
Confidence 4566666555544 23445666654 56666677888999999998543
No 238
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=20.42 E-value=33 Score=26.38 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=24.7
Q ss_pred hhhHhhhC---CCHHHHHHHHHhcccCCCceee-cCchh
Q 018577 227 EEHTAALG---GSLETIAMAKSGIIKYGRPVVS-AYDAG 261 (353)
Q Consensus 227 ~DHl~~lG---~tle~ia~~Ka~Iik~g~~vv~-~dd~~ 261 (353)
.||+.||+ .++|+|..+|..-++.+..-+. -|.|+
T Consensus 51 aDnLgwF~d~~~~IEdil~~kGe~V~~~~~d~~~ed~pe 89 (100)
T 2e2z_A 51 ADHLKIFHDHHVTVEQLMKANGEQVSQDVGDLEFEDIPD 89 (100)
T ss_dssp CCSSCSGGGSCCCHHHHHHHHCCCCSSSSCEEEESSCCH
T ss_pred ehhhhhhccCCCCHHHHHHHcCCEeeecCCCccHhhChH
Confidence 57887775 4899999999988887544333 34454
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=20.33 E-value=1.7e+02 Score=26.47 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=25.9
Q ss_pred cEEEEcCC--CCchHHHHHHHHHHH-HcCCCeEEec
Q 018577 95 KTVHIAGT--KGKGSTAAFLSSILR-AEGYSVGCYT 127 (353)
Q Consensus 95 ~vI~VtGT--nGKtSTt~ml~~IL~-~~G~~vg~~t 127 (353)
+.+-+.|. .|||+.+..|+.-+. ..|+++..++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 55667774 699999999999888 8898876543
No 240
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.32 E-value=84 Score=27.53 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=25.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHH--HHcCCCeEEecC
Q 018577 92 SKFKTVHIAGTKGKGSTAAFLSSIL--RAEGYSVGCYTS 128 (353)
Q Consensus 92 ~~~~vI~VtGTnGKtSTt~ml~~IL--~~~G~~vg~~tS 128 (353)
..-.+..|||.-|+|-|+.+|..+. ..+|.++.++++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3457889999976666676665554 456889877653
No 241
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=20.25 E-value=2.1e+02 Score=27.00 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHcCCCCCCCcEEEEcCCCC-ch-HHHHHHHHHHHHcCCCeEEe
Q 018577 76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKG-KG-STAAFLSSILRAEGYSVGCY 126 (353)
Q Consensus 76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnG-Kt-STt~ml~~IL~~~G~~vg~~ 126 (353)
.++++...++.+|. -+++-|||.++ +. -...-+...|+++|+.+..|
T Consensus 30 ~l~~l~~~l~~~g~----~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f 78 (407)
T 1vlj_A 30 TIPKIGEEIKNAGI----RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEV 78 (407)
T ss_dssp CGGGHHHHHHHTTC----CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCC----CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEe
Confidence 37778888888873 37888987432 33 25667777888889877655
Done!