BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018578
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 75/117 (64%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K ++ GAD + +DS+GRT LH+A G + ++L+ GA+V+A D
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+ T LHYAA G KE V LL+ GA V + DG+TP+D+A+ + +++KLLEK
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 66/108 (61%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
G+ + +K+ + GAD + DS+GRT LH+A G + ++L+ GA+V+A D + T L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPL 74
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
HYAA G KE V LL+ GA V ++ DG+TP+ A +++KLL
Sbjct: 75 HYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K ++ GAD + +DS+GRT LH+A G + ++L+ GA+V+ D
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T L A +G +E V LL + G
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
AA G K+ V L+ENGA V + DG+TP+ A +++KLL
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLL 56
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 74/117 (63%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+HH A G E +K ++ GAD + +DS+GRT LH A G + ++L+ GA+V+A D
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+ T LH+AA G KE V LL+ GA V + DG+TP+D+A+ + +V+KLLEK
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
G+ + +K+ + GAD + DS+GRT LH A G + ++L+ GA+V+A D + T L
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL 74
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
H+AA G KE V LL+ GA V ++ DG+TP+ A N +V+KLL
Sbjct: 75 HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+HH A G E +K ++ GAD + +DS+GRT LH A G + ++L+ GA+V+ D
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T L A +G +E V LL + G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
AA G K+ V L+ENGA V + DG+TP+ A N +V+KLL
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLL 56
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K L+ GAD + +DS+GRT LH+A G + ++LL GA+ +A D
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+ T LHYAA G KE V LLL GA + DG+TP+D+A+ + +++KLLEK
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 66/111 (59%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G+ + +K+ L GAD + DS+GRT LH+A G + ++LL GA+ +A D +
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
T LHYAA G KE V LLL GA ++ DG+TP+ A N +++KLL
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G E +K L+ GAD + +DS+GRT LH+A G + ++LL GA+ + D
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAV 321
+ T L A +G +E V LL + G +
Sbjct: 134 SDGRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
AA G K+ V LLENGA + DG+TP+ A N +++KLL
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLL 56
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 71/115 (61%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L AGAD + +D GRT LH A G ++ ++LLEAGA+V+A D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
KN T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
GRT LH A G ++ ++LLEAGA+V+A DKN T LH AA G E V LLLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 322 TLQNMDGKTPIDVAKLNSQHDVLKLL 347
++ +G+TP+ +A N +V+KLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 53/87 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L AGAD + +D GRT LH A G ++ ++LLEAGA+V+A D
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
KN T LH AA G E V LLLE GA
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
N T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L+ GAD + +DS+G+T LH A G + ++LL GA+ +A D
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+ T LH AA G KE V LLL GA + DG+TP+D+A+ + +V+KLLEK
Sbjct: 101 SDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 65/111 (58%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G+ + +K+ L GAD + DS+G+T LH A G + ++LL GA+ +A D +
Sbjct: 12 AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
T LH AA G KE V LLL GA ++ DGKTP+ +A N +V+KLL
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L+ GAD + +DS+G+T LH A G + ++LL GA+ + D
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
+ T L A +G +E V LL + G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
AA G K+ V LLENGA V + DGKTP+ +A N +V+KLL
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLL 56
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
K+ T LH AA G E V +LL+ GA V Q+ GKTP D+A N D+ ++L+K A
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 71/119 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 351
K+ T LH AA G E V +LL+ GA V Q+ GKTP D+A D+ ++L+K A
Sbjct: 99 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD D D G T LH A +G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+ T LH AA +G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
+IL+ GA+V+A D T LH AA G E V +LL++GA V ++ G TP+ +A
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAY 89
Query: 338 NSQHDVLKLLEKD 350
+++++L K+
Sbjct: 90 WGHLEIVEVLLKN 102
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%)
Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
N+ + +H AS G E ++ L GAD + D G T LH A G ++ ++LL+ GA
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
+V+A D + +T LH AA YG E V +LL++GA V Q+ GKT D++ N D+ ++
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 347 LE 348
L+
Sbjct: 165 LQ 166
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 65/113 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D++G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL++GA V + DG TP+ +A +++++L K
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
AA G+ + V +L+ NGA V + DG TP+ +A N +++++L K+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +DS G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
N T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A +G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+NGA V + +G TP+ +A +++++L K
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
+IL+ GA+V+A D T LH AA +G E V +LL+NGA V + G TP+ +A
Sbjct: 30 VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAAD 89
Query: 338 NSQHDVLKLLEKDA 351
+V+++L K+
Sbjct: 90 RGHLEVVEVLLKNG 103
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + +DS G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+ T LH AA G E V +LL+NGA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 64/114 (56%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A +G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
T LH AA G E V +LL+NGA V + G TP+ +A +++++L K+
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 69/116 (59%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L AGAD + +D +G T LH A G ++ ++LL+AGA+V+A D
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
K+ T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+
Sbjct: 111 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK+
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V ++ DG TP+ +A +++++L K
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 68/113 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D +G T LH A Y ++ ++LL+ GA+V+A D + +
Sbjct: 22 ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA +G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 73.9 bits (180), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
GRT LH A G ++ ++LLEAGA+V+A DKN T LH AA G E V LLLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 322 TLQNMDGKTPIDVAKLNSQHDVLKLL 347
++ +G+TP+ +A N +V+KLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 70.9 bits (172), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 53/87 (60%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E +K L AGAD + +D GRT LH A G ++ ++LLEAGA+V+A D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 293 KNKNTALHYAAGYGRKECVALLLENGA 319
KN T LH AA G E V LLLE GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
N T LH AA G E V LLLE GA V ++ +G+TP+ +A N +V+KLL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D+ G T LH A +G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
N T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 DNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A +G ++ ++LL+ GA+V+A D +
Sbjct: 22 ARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA +G E V +LL+NGA V ++ +G TP+ +A +++++L K
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
+IL+ GA+V+A D T LH AA +G E V +LL+NGA V + G TP+ +A
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAH 89
Query: 338 NSQHDVLKLLEKD 350
+++++L K+
Sbjct: 90 FGHLEIVEVLLKN 102
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + D++G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 AYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED+ G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 22 ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGM 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
T L AA +G E V +LL+NGA V +M+G TP+ +A + +++++L K+
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 67/117 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D G T L A +G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+T LH AA +G E V +LL+NGA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
AA GR + V +L+ NGA V ++ G TP+ +A N +++++L K+
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A ++ L GAD +D G LH AC YG + A++L++ GA V+ D
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
K T LH AA G+ E LLL++GA T +N DG TP+D+ K + D+ LL DA
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Query: 353 L 353
L
Sbjct: 165 L 165
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 286 ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 345
N ++ ++T LH+AAGY R V LL++GA V ++ G P+ A ++V +
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 346 LLEK 349
LL K
Sbjct: 93 LLVK 96
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A ++ L GAD +D G LH AC YG + A++L++ GA V+ D
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 107
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
K T LH AA G+ E LLL++GA T +N DG TP+D+ K + D+ LL DA
Sbjct: 108 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 166
Query: 353 L 353
L
Sbjct: 167 L 167
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 286 ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 345
N ++ ++T LH+AAGY R V LL++GA V ++ G P+ A ++V +
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 346 LLEK 349
LL K
Sbjct: 95 LLVK 98
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A ++ L GAD +D G LH AC YG + A++L++ GA V+ D
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 109
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF 352
K T LH AA G+ E LLL++GA T +N DG TP+D+ K + D+ LL DA
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 168
Query: 353 L 353
L
Sbjct: 169 L 169
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 286 ANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 345
N ++ ++T LH+AAGY R V LL++GA V ++ G P+ A ++V +
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 346 LLEK 349
LL K
Sbjct: 97 LLVK 100
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G E ++ L GAD + D G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D+ G T LH A YG ++ ++LL+ GA+V+A+D +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL++GA V + G TP+ +A + +++++L K
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G E ++ L GAD + D G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D+ G T LH A YG ++ ++LL+ GA+V+A+D +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL++GA V + G TP+ +A + +++++L K
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 67/113 (59%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED G+T LH A G ++ ++LL+ GA+V+A DK +
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA YG E V +LL+NGA V + G TP+ +A +++++L K
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D G T LH A YG ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 TYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
+IL+ GA+V+A D + T LH AA G E V +LL++GA V + G TP+ +A L
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL 89
Query: 338 NSQHDVLKLLEKD 350
+++++L K+
Sbjct: 90 YGHLEIVEVLLKN 102
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D GRT LH A G ++ ++LL GA+V+A+D N
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V ++ G TP+ +A +++++L K
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+VG E ++ L GAD + D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD 98
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
T L+ AA +G E V +LL++GA V Q+ GKT D++ D+ ++L+
Sbjct: 99 ATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 65/113 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED G T LH A ++ ++LL+ GA+V+A+D
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH A YG E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 235 HTASVGD-AEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
H A++ D E ++ L GAD + D+ G T LH YG ++ ++LL+ GA+V+A DK
Sbjct: 52 HLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Query: 294 NKNTALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
AA G+ + V +L+ NGA V ++ G TP+ +A +N +++++L K+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
+A GAD + D G T LH A G ++ ++LL+ GA+V+A D T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
E V +LLE GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + DS GRT LH A G ++ ++LLE GA+V+A D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 65/116 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A VG E ++ L GAD + D G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
+T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 66/113 (58%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + ED+ G T LH A G ++ ++LL+ GA+V+ALD + +
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V + G TP+ +A +++++L K
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
+K L+ G+D + D+E LH+A G V A+ILL A ++ A++ + ++ LH AA
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 340
R +CV L L + VTL+N +G+TP+ A LNSQ
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
S +H A G + + AGA+ D + RT L A ++ + L++AGA VD
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
D +T LH AA G E V LL NG V Q+ G TP+ A D++KLL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN 317
E R+ LH A G V +L++AGAN+D +++ T L AA E V L++
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
GA V ++ +G T + +A ++V++ L
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
+NK + LH AA G + +L++ GA + + D +TP+ A N+ + +K L K
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
+A GAD + D G T LH A G ++ ++LL+ GA+V+A D T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
E V +LLE GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D GRT LH A G ++ ++LLE GA+V+A D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%)
Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
+G T LH A G + + LL GA+V+A K+ NT LH AA G E V LLL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
V ++ DG TP +AK N H+++KLL+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ A G AE +K L+ GAD + +G T LH A G + ++LL GA+V+A
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNM 326
K+ NT H A G E V LL GA V ++
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
K+ NT LH AA G E V LL GA V ++ DG TP+ +A N +++KLL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
+A GAD + D G T LH A G ++ ++LL+ GA+V+A D T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
E V +LLE GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 94 EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D GRT LH A G ++ ++LLE GA+V+A D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H + G E ++ L AD + D G T LH A G ++ ++LL+ GA+V+A+D
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH G ++ ++LL+ A+V+A DK+
Sbjct: 22 ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V + G TP+ +A + +++++L K
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD V N + +H A G E ++ L GAD D D G T LH A G ++
Sbjct: 37 GAD-VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEI 95
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
++LL+ GA+V+A D +T LH AA G E V +LL+ GA V Q+ GKT D++
Sbjct: 96 VEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 338 NSQHDVLK 345
N D+ K
Sbjct: 156 NGNEDLAK 163
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 63/113 (55%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D+ G T LH A G ++ ++LL+ GA+VDA D
Sbjct: 22 ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V +M G TP+ +A +++++L K
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVA 312
D D D GRTAL F G G KC ++L EAGA++D D + TALH AAGY R E V
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 313 LLLENGAAVTLQNMDGKTPIDVAK 336
L+E GA + +++ G T +++A+
Sbjct: 128 ALVELGADIEVEDERGLTALELAR 151
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G E ++ L GAD + D+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL+ GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 111 YEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL++GA V ++ +G TP+ +A + +++++L K
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GAD +D G LH AC YG + ++LL+ GA V+A+D + T LH AA R
Sbjct: 78 LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVA 335
E +LLL +GA TL N GK+ +D+A
Sbjct: 138 EVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 260 SEGR--TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLEN 317
S+GR T LH A GY V+ Q+LL+ GA+V A DK LH A YG E LLL++
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
GA V ++ TP+ A ++ +V LL
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 274 EVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
E K +L N A D K+T LH AAGY R V LLL++GA V ++ G P+
Sbjct: 37 EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96
Query: 334 VAKLNSQHDVLKLLEK 349
A ++V +LL K
Sbjct: 97 NACSYGHYEVTELLLK 112
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA+ +E++ + T LH A ++L + GA ++ALD TALH AA G
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 309 ECVALLLENGAAVTLQNMDGKT 330
+ LLL G+ ++ ++ G T
Sbjct: 294 QTCRLLLSYGSDPSIISLQGFT 315
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 297 TALHYAAGY---GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
TALH A RK+ LLL GA V +N D TP+ VA + +DV+++L K
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK 268
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 264 TALHFACGYGEVK---CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA 320
TALH A K A++LL GANV+ +K+ T LH AA + + +L ++GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+ + G+T + A L +LL
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLL 299
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 65/113 (57%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + D +G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 22 ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + ED+ G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 66/113 (58%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D G T L+ A +G ++ ++LL+ GA+V+A+D
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
+H A +G E + L GAD + +D G+TA + G G A+IL
Sbjct: 84 LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD-KNKNTALHYAAGYGRKECVA 312
D D D GRTAL F G G KC ++L EAGA++D D + TALH AAGY R E V
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 313 LLLENGAAVTLQNMDGKTPIDVAK 336
L+E GA + +++ G T +++A+
Sbjct: 129 ALVELGADIEVEDERGLTALELAR 152
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G E ++ L GAD + DS G T LH A G ++ ++LL+ GA+V+A D
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
+ T LH AA G+ E V +LL++GA V Q+ G T D++ Q D+ ++L+
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A+ G + ++ +A GAD + D G T LH A G+++ ++LL+ GA+V+A D
Sbjct: 14 AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI 73
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
T LH AA G E V +LL++GA V + G TP+ +A L+ Q +++++L K
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 269 ACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
A G+ +IL+ GA+V+A D N T LH AA G+ E V +LL+NGA V + G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 329 KTPIDVAKLNSQHDVLKLLEK 349
TP+ +A + +++++L K
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLK 93
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
AA G+ + V +L+ NGA V + +G TP+ +A N Q +++++L K+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN 61
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 60/116 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A G + L AG +D RT LH A G ++LL+ GA+V+A D
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
K TALH+A + +E V LL++ GA V Q+ KT D++ N D+ ++L+
Sbjct: 98 MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
D G + LH A YG ++LL AG + DA K T LH AA G V +LL++G
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
A V ++M T + A ++ +V++LL K
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D + +H AS G A ++ L GAD + +D TALH+A + + ++L++ GA+V
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Query: 289 DALDKNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 127 HTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
E+++H + GD ++ L G+D + +D G T LH AC +G +K ++LL+ A V+
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
++ LH AA G + V LLL GA+ N+ G P+D S +L L EK
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Query: 350 D 350
+
Sbjct: 131 N 131
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ G T LH A G++ + LL+ G++ + D T LH A +G + V LLL++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
A V +P+ A N D++KLL
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%)
Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE 309
A GAD + D G T LH A G ++ ++LL+ GA+V+A T LH AA E
Sbjct: 35 ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLE 94
Query: 310 CVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
V +LL++GA V Q+ GKT D++ N D+ ++L+K
Sbjct: 95 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A +G E ++ L GAD + + GRT LH A ++ ++LL+ GA+V+A D
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 293 KNKNTALHYAAGYGRKECVALL 314
K TA + G ++ +L
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 235 HTAS-VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDK 293
H AS +G +KN L GA + + + T LH A G + A+ LL+ A V+A K
Sbjct: 19 HVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78
Query: 294 NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD-VLKLLEKDA 351
+ T LH AA G V LLLEN A L G TP+ +A + VL LLEK+A
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
G D G T LH A YG +K + LL+ A+V+A K + LH AA G + V
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 312 ALLLENGAAVTLQNMDGKTPIDVAK---LNSQHDVLKLL 347
LLL+NGA+ + DG TP+ +AK S DVLK++
Sbjct: 361 TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 59/120 (49%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+D++ +H A +G +K L A+ + + G T LH A G V+ LLE A+
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 138
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+ K T LH AA YG+ LLLE A +G TP+ VA ++ D++KLL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
G+ AE V + + +H A G AE + L+ A+ + + G T LH G V
Sbjct: 236 GSANAESV--QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 293
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
A +L++ G VDA + T LH A+ YG + V LL++ A V + G +P+ A
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353
Query: 338 NSQHDVLKLLEKD 350
D++ LL K+
Sbjct: 354 QGHTDIVTLLLKN 366
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
+NA + A G+ + +H A G E + L A + +G T LH A YG+
Sbjct: 102 NNANPNLATTAGH---TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
V+ A++LLE A+ +A KN T LH A + + V LLL G + +G TP+ +
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Query: 335 AKLNSQHDVLKLL 347
A +Q +V + L
Sbjct: 219 AAKQNQVEVARSL 231
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVD 289
E+ +H A G E K L A + + + +T LH A G ++LLE AN +
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLE 348
+T LH AA G E V LLE A+ G TP+ VA + V + LLE
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 349 KDA 351
+DA
Sbjct: 168 RDA 170
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VHH + + +K L G G T LH A +V+ A+ LL+ G + +A
Sbjct: 187 VHHN----NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
T LH AA G E VALLL A L N G TP+ +
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTL 323
T LH A G + + LL+ GA+ + + T LH AA G E LL+N A V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 324 QNMDGKTPIDVAKLNSQHDVLKLL 347
+ D +TP+ A +++KLL
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLL 99
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 232 IVHHTASVGDAEGLKNALAAGADKD---EEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
+V + A G E LK ++ A DK D + RTALH+AC G + + LL+ G V
Sbjct: 9 MVCNLAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+ D + LH AA GR E V LL GA V N +G TP+ A ++H++ +L
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H AS G E +K L GA + + G T LH+A + A +LLE GAN DA
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
D + TA+H AA G + + +LL A+ +Q+ +G TP+ +A
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 169
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
NT LH A R E LL+ GA++ ++N + KTP+ VAK
Sbjct: 170 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+ + +H S G E ++ L G +++D G + LH A G + + LL GA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 98
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA 319
V+A+++N T LHYAA R E +LLE GA
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G+ + + L A + +D+EG T LH AC V+ A++L+ GA++ +
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 202
Query: 293 KNKNTALHYAAG 304
K + T L A G
Sbjct: 203 KEEKTPLQVAKG 214
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 232 IVHHTASVGDAEGLKNALAAGADKD---EEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
+V + A G E LK ++ A DK D + RTALH+AC G + + LL+ G V
Sbjct: 10 MVCNLAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 67
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+ D + LH AA GR E V LL GA V N +G TP+ A ++H++ +L
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 126
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H AS G E +K L GA + + G T LH+A + A +LLE GAN DA
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
D + TA+H AA G + + +LL A+ +Q+ +G TP+ +A
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 111 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 170
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
NT LH A R E LL+ GA++ ++N + KTP+ VAK
Sbjct: 171 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+ + +H S G E ++ L G +++D G + LH A G + + LL GA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGA 319
V+A+++N T LHYAA R E +LLE GA
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H A+ G+ + + L A + +D+EG T LH AC V+ A++L+ GA++ +
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 203
Query: 293 KNKNTALHYAAG 304
K + T L A G
Sbjct: 204 KEEKTPLQVAKG 215
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
D + RTALH+AC G + + LL+ G V+ D + LH AA GR E V LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
A V N +G TP+ A ++H++ +L
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H AS G E +K L GA + + G T LH+A + A +LLE GAN DA
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
D TA+H AA G + V +LL A+ +Q+ +G TP+ +A
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
NT LH A R E L+ GA++ ++N + KTP+ VAK
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D + +H A+ G+ + + L A + +D+EG T LH AC V+ A+ L+ GA++
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 289 DALDKNKNTALHYAAG 304
+K + T L A G
Sbjct: 199 YIENKEEKTPLQVAKG 214
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H AS G E +K L GA + + G T LH+A + A +LLE GAN DA
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
D TA+H AA G + V +LL A+ +Q+ +G TP+ +A
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
D + RTALH+AC G + + LL+ G V+ D + LH AA G E V LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 319 AAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
A V N +G TP+ A ++H++ +L
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
+H+ AS E L GA+ D +D TA+H A G +K ILL A+ + D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
NT LH A R E L+ GA++ ++N + KTP+ VAK
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D + +H A+ G+ + + L A + +D+EG T LH AC V+ A+ L+ GA++
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Query: 289 DALDKNKNTALHYAAG 304
+K + T L A G
Sbjct: 199 YIENKEEKTPLQVAKG 214
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 9/134 (6%)
Query: 216 NAGADEAEEVGNEDESI-VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
NAGA N D+++ +H G + +K L + A +++D G T L +AC G
Sbjct: 111 NAGAR------NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH 164
Query: 275 VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
+ +LL+ GA+++A + NTALH A V LLL +GA+V + N +T +D
Sbjct: 165 HELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDC 224
Query: 335 AKLNSQHDVLKLLE 348
A+ NS+ +++LL+
Sbjct: 225 AEQNSK--IMELLQ 236
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 225 VGNEDESIVHHTASV-GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
V ++D S H A++ G A+ + L GA+ +++ LH AC G + + LL+
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 284 AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 343
+ A + D + NT L YA G E VALLL++GA++ N G T + A + V
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 344 LKLL 347
++LL
Sbjct: 201 VELL 204
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 250 AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKE 309
A+G + +G + LH A +G +LL+ GAN A + ++ LH A G +
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQ 133
Query: 310 CVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
V LL++ A +++ G TP+ A H+++ LL
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE-VK 276
GAD + + E S +H A G + +A G D D D G T L +A V
Sbjct: 99 GADPSL-IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 277 CAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
++LL +V+ DK +KNTALH+A G ++LLLE GA V QN+ G++ +D+A
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Query: 336 K 336
K
Sbjct: 218 K 218
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSE-GRTALHFACGYGEVKCAQILLEAGA 286
E+ +++H A + +K ++ GA D+ + T LH+A G + L++ GA
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
+ +D + +H AA +G VA L+ G V + + +G TP+
Sbjct: 101 DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN-TA 298
G E + + AG D + D E T LH+A + + + GA VD L + N T
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79
Query: 299 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
LH+A G V L++ GA +L + +G + I +A
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 269 ACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
A YG + + L+EAG +V DK T LH+AA R + V + GA V
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV 68
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 244 GLKNA---LAAGADK-DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
G++NA L DK +++D EG TAL +A + A+ LL G+NV+ D + T L
Sbjct: 46 GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA-KLNSQHDVLKLLE 348
++ +G E LLE+GA V +N++G+TP+ VA K V KLLE
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G AE L L+ G++ + +D G+T L ++ +G + + LLE GANV+ + T
Sbjct: 81 LGIAEKL---LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137
Query: 299 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
L A+ YGR E V LLE GA ++ +++ G T A++ + +V+K+
Sbjct: 138 LIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA+ ++ + EG T L A YG + + LLE GA++ A D TA A +GR+
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180
Query: 309 ECVALLLE 316
E + + E
Sbjct: 181 EVIKIFTE 188
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 255 KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL 314
++ DS RT L AC G L+E ++ D +TAL +A R L
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 315 LENGAAVTLQNMDGKTPI 332
L G+ V ++ GKTP+
Sbjct: 88 LSKGSNVNTKDFSGKTPL 105
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+D ++ S GD E + L GAD + + +G TALH AC V + L+E GAN
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
++ D LH AA G + L+ GA V N +G TP+D+
Sbjct: 99 INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
G TALH A G + ++L++A +V+ D + T LH AA +G++E +L+EN +
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 322 TLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
N G+T DVA D+L LE+
Sbjct: 259 EAVNKVGQTAFDVA----DEDILGYLEE 282
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 269 ACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
AC G+ + LLE GA+++ + + TALH A + V L+ENGA + + +G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 329 KTPIDVA 335
P+ A
Sbjct: 107 WIPLHAA 113
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
K+ TALH AA G E + LL++ V +++ DG TP+ A + + ++L
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
+H A+ G+ + LK L G + ++ D G T L +A +GE++ + LLE GA+ L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
K + +AL A+ G + V LLLE + + + +G TP+
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
++ G+ E ++ L GAD E +AL A G +LLE +++ D N
Sbjct: 44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
T L YA +CV LL GA +T + G TP+D+A V +++E
Sbjct: 104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 233 VHHTASVGDAEGLKNALAAGAD-KDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
+H A+ G+ + LK L G + ++ D G T L +A +GE++ + LLE GA+ L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
K + +AL A+ G + V LLLE + + + +G TP+
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
++ G+ E ++ L GAD E +AL A G +LLE +++ D N
Sbjct: 44 SAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG 103
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
T L YA +CV LL GA +T + G TP+D+A V +++E
Sbjct: 104 TPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
+++ + A AD + D+ G+TALH+A + ILL AN DA D T L AA
Sbjct: 134 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
G E LL+N A + + + P DVA HD+++LL++
Sbjct: 194 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 34/121 (28%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE------------------------- 283
L AGAD + +D+ GRT LH A + QILL
Sbjct: 71 LDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAI 130
Query: 284 ---------AGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 334
A A+++A D + TALH+AA E V +LL + A Q+ +TP+ +
Sbjct: 131 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL 190
Query: 335 A 335
A
Sbjct: 191 A 191
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE-DSEGRTALHFACGYGEVK 276
G D E++ N ++S TA V + + LA GA+ + D G T+LH A +
Sbjct: 15 GLDTGEDIENNEDS----TAQV-----ISDLLAQGAELNATMDKTGETSLHLAARFARAD 65
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVA 335
A+ LL+AGA+ ++ D T LH A +LL N A + + DG TP+ +A
Sbjct: 66 AAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA 125
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 199 GEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258
G A+ + + D T + N G D S +H G + ++ + GA +
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGF-------SPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ T LH A +G Q LL+ A+++A++++ N LHYA +G+ + L+ NG
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 319 AAVTLQNMDGKTPIDVAK 336
A V++ N G+ P+D AK
Sbjct: 129 ALVSICNKYGEMPVDKAK 146
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
D ++ D G + LH+AC G ++L+ GA ++ +++ +T LH AA +G ++ V
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 314 LLENGAAVTLQNMDGKTPIDVAKLNSQHDV 343
LL+ A + N G P+ A Q V
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQV 120
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 270 CGYGEVKCAQILLEAGAN-VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
C G ++ L+ N ++ D + + LH+A GR V +L+ GA + + N
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 329 KTPIDVAKLNSQHDVL-KLLEKDA 351
TP+ +A + D++ KLL+ A
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKA 96
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 243 EGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILL-EAGANVDALDKNKNTALHY 301
+G K A KD E +GRTALH+A + L+ E G+N D D++ T +
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
AA GR E V L++ GA+V + T +A+ N+ H+++ + ++
Sbjct: 320 AAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 233 VHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
+H+ A V + +K + G++KD++D +G+T + A G ++ L++ GA+V+A+
Sbjct: 283 LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Query: 292 DKNKNTALHYA 302
D +TA A
Sbjct: 343 DATDHTARQLA 353
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 263 RTALHFACGYGE--------VKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL 314
RT LH+ V A+ + AGA+V+A D ++NT L A R+ VA L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYL 185
Query: 315 LENGAAVTLQNMDGKTPIDVAKLN 338
+ GA T+ N ++ + A N
Sbjct: 186 XKAGADPTIYNKSERSALHQAAAN 209
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 229 DESIVHHTASVGDAEG--------LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQI 280
+ +++H AS AE K +AAGAD + D + T L A +
Sbjct: 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAY 184
Query: 281 LLEAGANVDALDKNKNTALHYAA 303
L +AGA+ +K++ +ALH AA
Sbjct: 185 LXKAGADPTIYNKSERSALHQAA 207
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
GD + +K+ +A G D + GR LH+A G+++ + LL GA+++A DK+ T L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
A G CV LLL GA T++ DG T ++
Sbjct: 73 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+H+ A G E L+ L GAD + D T L A G V C ++LL GA+
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 199 GEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258
G A+ + + D T + N G D S +H G + ++ + GA +
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGF-------SPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ T LH A +G Q LL+ A+++A++++ N LHYA +G+ + L+ NG
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 319 AAVTLQNMDGKTPIDVAK 336
A V++ N G+ P+D AK
Sbjct: 124 ALVSICNKYGEMPVDKAK 141
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
D ++ D G + LH+AC G ++L+ GA ++ +++ +T LH AA +G ++ V
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 314 LLENGAAVTLQNMDGKTPIDVAKLNSQHDV 343
LL+ A + N G P+ A Q V
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQV 115
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 270 CGYGEVKCAQILLEAGAN-VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 328
C G ++ L+ N ++ D + + LH+A GR V +L+ GA + + N
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 329 KTPIDVAKLNSQHDVL-KLLEKDA 351
TP+ +A + D++ KLL+ A
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKA 91
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTAL 299
GD + +K+ +A G D + GR LH+A G+++ + LL GA+++A DK+ T L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 300 HYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
A G CV LLL GA T++ DG T +
Sbjct: 78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN 287
+H+ A G E L+ L GAD + D T L A G V C ++LL GA+
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D S +H A G L+N ++ G + ++ + LH AC G + C +ILL+ GA V
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAV 321
+ + + +T L A G +CV LLL++GA+V
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV 151
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H A G E + + +A G + D + S T L+ AC + C + LLE+GA+V+
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 218
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
K +++ LH +E LL++ GA +N +GK P+++
Sbjct: 219 -GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 264 TALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTL 323
+ +H A +G + L+ G V+ + + + LH A G CV +LL++GA V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 324 QNMDGKTPIDVAKLNSQHDVLKLL 347
D TP+ A ++ D + LL
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLL 144
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 257 EEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLE 316
+ +S+ + +H A G V+C L+ G N+D + T L+ A ++ CV LLE
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 317 NGAAV 321
+GA V
Sbjct: 212 SGADV 216
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANV 288
D S +H A G L+N ++ G + ++ + LH AC G + C +ILL+ GA V
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 289 DALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
+ + + +T L A G +CV LLL++GA+V ++ D +PI
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPI 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
S +H A G E + + +A G + D + S T L+ AC + C + LLE+GA+V+
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ 162
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
K +++ LH A +E LL++ GA +N +GK P+++
Sbjct: 163 -GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELV 206
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A V + N L + +S+ + +H A G V+C L+ G N+D +
Sbjct: 76 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 135
Query: 297 TALHYAAGYGRKECVALLLENGAAV 321
T L+ A ++ CV LLE+GA V
Sbjct: 136 TPLYLACENQQRACVKKLLESGADV 160
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 281 LLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 340
L+ G V+ + + + LH A G CV +LL++GA V D TP+ A ++
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81
Query: 341 HDVLKLL 347
D + LL
Sbjct: 82 WDCVNLL 88
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
+IL+ GA+V A DKN +T LH AA G E V LLLE GA V Q+ GKT D++ N
Sbjct: 41 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100
Query: 339 SQHDVLKLLE 348
D+ ++L+
Sbjct: 101 GNEDLAEILQ 110
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD +D G T LH A G ++ ++LLEAGA+V A DK
Sbjct: 32 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 297 TALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
AA G+ + V +L+ NGA V ++ +G TP+ +A N +V+KLL
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
+IL+ GA+V A DKN +T LH AA G E V LLLE GA V Q+ GKT D++ N
Sbjct: 23 RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDN 82
Query: 339 SQHDVLKLLE 348
D+ ++L+
Sbjct: 83 GNEDLAEILQ 92
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD +D G T LH A G ++ ++LLEAGA+V+A DK
Sbjct: 14 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGK 73
Query: 297 TALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 74 TAFDISIDNGNEDLAEIL 91
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
AA G+ + V +L+ NGA V ++ +G TP+ +A N +V+KLL
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 58
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
+H A G E +K L AGAD + +D G+TA + G A+IL
Sbjct: 43 LHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 243 EGLKNALAAGADKDEED-SEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY 301
E ++ L GAD D D GR+ L A + Q+LL+ GANV+A + ++ALH
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 345
A+G G V L+ +GA +L+N TP+ VA+ D+L+
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
G E + N ++ +H ++ + AGA D G+TA H AC + C
Sbjct: 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94
Query: 278 AQILLEAGA----NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPI 332
+ LL++ A +++A + + TALH A +E V LLLE GA + ++ G++P+
Sbjct: 95 LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 333 DVAKLNSQHDVLKLL 347
A N+ +++LL
Sbjct: 155 IHAVENNSLSMVQLL 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
G + D ++ +T LH A ++L+ AGA+ ALD++ TA H A + C+
Sbjct: 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCL 95
Query: 312 ALLLENGAAVTL----QNMDGKTPIDVA-KLNSQHDVLKLLEKDA 351
LL++ A TL +N DG T + VA Q V LLE+ A
Sbjct: 96 RALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGA 140
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G++ Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
LH AA G V L+++ A+ V +N G T D+A+L +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE-AGANVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ +NV
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ +TA A YGR E V+L+ NGA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
L GAN D D+ +H AA G+ + + LLE A V +++ +G P+ +A
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 342 DVLKLLEK 349
V++ L K
Sbjct: 117 RVVEFLVK 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
LH AA G V L+++ A+ V +N G T D+A+L +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
A D + GN +++H A G + L+ L AD + ED+EG LH A G ++
Sbjct: 61 ANPDLKDRTGN---AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 277 CAQILLE-AGANVDALDKNKNTALHYAAGYGRKECVALLLENGA--AVTLQ 324
+ L++ +NV + +TA A YGR E V+L+ NGA A LQ
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
L GAN D D+ N +H AA G + + LLE A V +++ +G P+ +A
Sbjct: 57 LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 342 DVLKLLEK 349
V++ L K
Sbjct: 117 RVVEFLVK 124
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 279 QILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 338
+IL+ GA+V+A DK+ T LH AA G E V +LL+ GA V Q+ GKT D++ N
Sbjct: 19 RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDN 78
Query: 339 SQHDVLKLLEKDA 351
D+ ++L+K A
Sbjct: 79 GNEDLAEILQKAA 91
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + ++ +A GAD + +D +G T LH A G ++ ++LL+AGA+V+A DK
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 297 TALHYAAGYGRKECVALL 314
TA + G ++ +L
Sbjct: 70 TAFDISIDNGNEDLAEIL 87
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 302 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
AA G+ + V +L+ NGA V ++ DG TP+ +A +++++L K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 233 VHHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA 290
H SVG+ E +K+ D ++ ++G T LH A G + +Q L+E GA+V
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 291 LDKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPI 332
DK LH AA G + + LL G +AV Q+ G TP+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 234 HHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
H SVG+ E +K+ D ++ ++G T LH A G + +Q L+E GA+V
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 292 DKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPI 332
DK LH AA G + + LL G +AV Q+ G TP+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
LH AA G V L+++ A+ V +N G T D+A+L +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE-AGANVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ +NV
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ +TA A YGR E V+L+ NGA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
L GAN D D+ +H AA G + + LLE A V +++ +G P+ +A
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 342 DVLKLLEK 349
V++ L K
Sbjct: 117 RVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
LH AA G V L+++ A+ V +N G T D+A+L +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE-AGANVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ +NV
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA 319
+ +TA A YGR E V+L+ NGA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
L GAN D D+ +H AA G + + LLE A V +++ +G P+ +A
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 342 DVLKLLEK 349
V++ L K
Sbjct: 117 RVVEFLVK 124
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 234 HHTASVGDAEGLKNAL--AAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDAL 291
H SVG+ E +K+ D ++ ++G T LH A G + +Q L+E GA+V
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
Query: 292 DKNKNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPI 332
DK LH AA G + + LL G +AV Q+ G TP+
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
E E++++HT A+ G ++ L GAD +AL AC G
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
++LL+ G +V+ D N T L YA +CV +LLE+GA T++ G +D+A
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Query: 337 LNSQHDVLKLLE 348
V +++E
Sbjct: 160 ALGYRSVQQVIE 171
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VH A+ G+ L + + D EG T L +A +G++ + LL+ GA+ L
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 82
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
K + +AL A G + V +LL+ G V + +G TP+ A + +K+L
Sbjct: 83 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 137
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD + +G ES + S G + +K L G D +E D G T L +A VKC
Sbjct: 75 GAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 133
Query: 278 AQILLEAGAN 287
++LLE+GA+
Sbjct: 134 VKMLLESGAD 143
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 280 ILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 339
+++ G ++DA + NTALHYAA Y + +C+ LLL+ A V N G+T +D+A+
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 340 QHDVLKLLEK 349
+ +LLE+
Sbjct: 271 HKECEELLEQ 280
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
G D + ++G TALH+A Y + C ++LL+ A V +++ TAL A KEC
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 312 ALL 314
LL
Sbjct: 276 ELL 278
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
V +++NG + + DG T + A L +Q D LKLL K
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 247
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTA 298
+G+ E + L GA+ D +D G +H A G + Q LLE A+V+ D N
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Query: 299 LHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
LH AA G V L+++ A+ V +N G T D+A+L +++V+ L++ +
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE-AGANVD 289
+++H A G + L+ L AD + ED+EG LH A G ++ + L++ +NV
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 290 ALDKNKNTALHYAAGYGRKECVALLLENGA--AVTLQ 324
+ +TA A YGR E V+L+ NGA A LQ
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 222 AEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQIL 281
AE GNE S A+ GD E L + L + + ++ GRTAL G + A+ L
Sbjct: 2 AEPWGNELAS----AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRL 56
Query: 282 LEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 341
L GAN D D+ +H AA G + + LLEN A V +++ +G P+ +A
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHL 116
Query: 342 DVLKLLEK 349
V++ L K
Sbjct: 117 RVVEFLVK 124
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
E E++++HT A+ G ++ L GAD +AL AC G
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
++LL+ G +V+ D N T L YA +CV +LLE+GA T++ G +D+A
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Query: 337 LNSQHDVLKLLE 348
V +++E
Sbjct: 144 ALGYRSVQQVIE 155
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VH A+ G+ L + + D EG T L +A +G++ + LL+ GA+ L
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
K + +AL A G + V +LL+ G V + +G TP+ A + +K+L
Sbjct: 67 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD + +G ES + S G + +K L G D +E D G T L +A VKC
Sbjct: 59 GAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 117
Query: 278 AQILLEAGAN 287
++LLE+GA+
Sbjct: 118 VKMLLESGAD 127
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 280 ILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 339
+++ G ++DA + NTALHYAA Y + +C+ LLL+ A V N G+T +D+A+
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 251
Query: 340 QHDVLKLLEK 349
+ +LLE+
Sbjct: 252 HKECEELLEQ 261
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
G D + ++G TALH+A Y + C ++LL+ A V +++ TAL A KEC
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 256
Query: 312 ALL 314
LL
Sbjct: 257 ELL 259
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 311 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
V +++NG + + DG T + A L +Q D LKLL K
Sbjct: 190 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 228 EDESIVHHT-----------ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVK 276
E E++++HT A+ G ++ L GAD +AL AC G
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 277 CAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 336
++LL+ G +V+ D N T L YA +CV +LLE+GA T++ G +D+A
Sbjct: 82 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Query: 337 LNSQHDVLKLLE 348
V +++E
Sbjct: 142 ALGYRSVQQVIE 153
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
VH A+ G+ L + + D EG T L +A +G++ + LL+ GA+ L
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 64
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
K + +AL A G + V +LL+ G V + +G TP+ A + +K+L
Sbjct: 65 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GAD + +G ES + S G + +K L G D +E D G T L +A VKC
Sbjct: 57 GAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC 115
Query: 278 AQILLEAGAN 287
++LLE+GA+
Sbjct: 116 VKMLLESGAD 125
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 216 NAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
N A++AE + N +H A G+ L+ L + D G TAL++AC G
Sbjct: 64 NYVAEQAESIDNP----LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 276 KCAQILLEAGANVDALDKNK--NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID 333
+ L N++ +NK +TALH AA G + V LLL GA L+N++ K D
Sbjct: 120 DIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Query: 334 VA 335
A
Sbjct: 179 XA 180
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 241 DAEGLKNALAAGADKDEE------DSEGRTALHFACG---YGEVKCAQILLEAGANVDAL 291
D GL A A G D E+ TALH A + L++ N+D
Sbjct: 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ 201
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK-LNSQH 341
+TALHY EC+ LLL A++ + N G+TP+D+AK L +H
Sbjct: 202 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALL 314
D++ +G TALH+ C +C ++LL A+++ +++ T L A + C LL
Sbjct: 199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 141 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 200
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 201 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 245
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 316 ENGAA-VTLQNMDGKTPIDVA 335
N A + + DG TP+ +A
Sbjct: 112 RNRATDLDARMHDGTTPLILA 132
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE------ 283
E+ +H A ++ K L A AD + +D+ GRT LH A QIL+
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 284 ----------------------------AGANVDALDKNKNTALHYAAGYGRKECVALLL 315
+ A+V+A+D +ALH+AA + +LL
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 178
Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+NGA +QN +TP+ +A ++ K+L
Sbjct: 179 KNGANKDMQNNREETPLFLAAREGSYETAKVL 210
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
D+ TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 167
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 316 ENGAA-VTLQNMDGKTPIDVA 335
N A + + DG TP+ +A
Sbjct: 79 RNRATDLDARMHDGTTPLILA 99
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 34/164 (20%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GA + E+ +H A ++ K L A AD + +D+ GRT LH A
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 278 AQILLE----------------------------------AGANVDALDKNKNTALHYAA 303
QIL+ + A+V+A+D +ALH+AA
Sbjct: 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 304 GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+ +LL+NGA +QN +TP+ +A ++ K+L
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
D+ TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
G E +LL++ A + + + P D+A+ HD+++LL+
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 316 ENGAA-VTLQNMDGKTPIDVA 335
N A + + DG TP+ +A
Sbjct: 111 RNRATDLDARMHDGTTPLILA 131
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE------ 283
E+ +H A ++ K L A AD + +D+ GRT LH A QIL+
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 284 ----------------------------AGANVDALDKNKNTALHYAAGYGRKECVALLL 315
+ A+V+A+D +ALH+AA + +LL
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+NGA +QN +TP+ +A ++ K+L
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
D+ TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
G E +LL++ A + + + P D+A+ HD+++LL+
Sbjct: 200 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ + D T LH A + +L+
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 316 ENGAA-VTLQNMDGKTPIDVA 335
N A + + DG TP+ +A
Sbjct: 111 RNRATDLDARMHDGTTPLILA 131
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 235 HTASVGDAEGLKNALAA--GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
H A DA+G+ L D D +G T L A + L+ + A+V+A+D
Sbjct: 95 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 293 KNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+ALH+AA + +LL+NGA +QN +TP+ +A ++ K+L
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
D+ TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 31 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 91 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 135
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%)
Query: 252 GADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECV 311
D D +G T L A + L+ + A+V+A+D +ALH+AA +
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 312 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+LL+NGA +QN +TP+ +A ++ K+L
Sbjct: 65 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 100
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 245 LKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAG 304
L++ + + AD + D G++ALH+A V A +LL+ GAN D + + T L AA
Sbjct: 105 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 164
Query: 305 YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 349
G E +LL++ A + + + P D+A+ HD+++LL++
Sbjct: 165 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
++ D G TALH A Y A+ LLEA A+ D T LH A + +LL
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 316 ENGAA-VTLQNMDGKTPIDVA 335
N A + + DG TP+ +A
Sbjct: 76 RNRATDLDARMHDGTTPLILA 96
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 34/164 (20%)
Query: 218 GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKC 277
GA + E+ +H A ++ K L A AD +D+ GRT LH A
Sbjct: 11 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 278 AQILLE----------------------------------AGANVDALDKNKNTALHYAA 303
QILL + A+V+A+D +ALH+AA
Sbjct: 71 FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAA 130
Query: 304 GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
+ +LL+NGA +QN +TP+ +A ++ K+L
Sbjct: 131 AVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 174
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 292 DKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 350
D+ TALH AA Y R + LLE A +Q+ G+TP+ A V ++L ++
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ EG TALH A G + + L++ G NV+A D + T LH AA + L+E+G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 319 AAV 321
AAV
Sbjct: 127 AAV 129
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 229 DESI--VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
DE I +H+ G E +K + G + + DS+G T LH A V+ + L+E+GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 287 NVDAL 291
V A+
Sbjct: 128 AVFAM 132
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
TALH A G E V L++ G V + DG TP+ A + V K L
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENG 318
+ EG TALH A G + + L++ G NV+A D + T LH AA + L+E+G
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 319 AAV 321
AAV
Sbjct: 127 AAV 129
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 229 DESI--VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
DE I +H+ G E +K + G + + DS+G T LH A V+ + L+E+GA
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 287 NVDAL 291
V A+
Sbjct: 128 AVFAM 132
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
TALH A G E V L++ G V + DG TP+ A + V K L
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN------VDALDKNKNTALHYA 302
L AG D + D G T LH AC G + +L ++ + A + N +T LH A
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 303 AGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEK 349
+ +G V LL+ GA V Q +G+T + +A D++ LL K
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLENGAA 320
G T LH A +G + ++L+ GA+V+A + N TALH A + V+LLL+ GA
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 321 VTLQNMDGKTPIDVA 335
V G +P +
Sbjct: 177 VNRVTYQGYSPYQLT 191
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKD-EEDSE 261
LA G T S + N + H AS+ G+ L + GAD + +E
Sbjct: 91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 150
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
GRTALH A +LL+ GA+V+ + + Y +GR
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP--YQLTWGR 194
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGAN------VDALDKNKNTALHYA 302
L AG D + D G T LH AC G + +L ++ + A + N +T LH A
Sbjct: 62 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 121
Query: 303 AGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEK 349
+ +G V LL+ GA V Q +G+T + +A D++ LL K
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALDK-NKNTALHYAAGYGRKECVALLLEN 317
+ G T LH A +G + ++L+ GA+V+A + N TALH A + V+LLL+
Sbjct: 111 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Query: 318 GAAVTLQNMDGKTP 331
GA V G +P
Sbjct: 171 GADVNRVTYQGYSP 184
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKD-EEDSE 261
LA G T S + N + H AS+ G+ L + GAD + +E
Sbjct: 88 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 147
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGR 307
GRTALH A +LL+ GA+V+ + + Y +GR
Sbjct: 148 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP--YQLTWGR 191
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ALD + +H A G
Sbjct: 63 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 122
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
V+ L + + ++ G TP+++A+ +++ +L+
Sbjct: 123 SVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 161
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 38 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
E+GA V + G PI +A V+ L
Sbjct: 97 EHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ALD + +H A G
Sbjct: 61 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHS 120
Query: 309 ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
V+ L + + ++ G TP+++A+ +++ +L+
Sbjct: 121 SVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQ 159
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 36 DALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 316 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
E+GA V + G PI +A V+ L
Sbjct: 95 EHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 245 LKNALAAGADKDEEDS--EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
+ +ALA GAD + + + T L A + + LL+ GANV+ D LH+A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
G L L+ GA + ++ +G+ P+ +A + D++ LL
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 245 LKNALAAGADKDEEDS--EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYA 302
+ +ALA GAD + + + T L A + + LL+ GANV+ D LH+A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275
Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
G L L+ GA + ++ +G+ P+ +A + D++ LL
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 227 NEDESIVHHTASVGDAEG-------LKNALAAGADKDEEDS--EGRTALHFACGYGEVKC 277
+ED +H A + A G + +ALA GAD + + + T L A +
Sbjct: 191 SEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLA 250
Query: 278 AQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
+ LL+ GANV+ D LH+A G L L+ GA + ++ +G+ P+ +A
Sbjct: 251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Query: 338 NSQHDVLKLLE 348
+ D++ LL
Sbjct: 311 TANADIVTLLR 321
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 262 GRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLLENGAA- 320
G+TAL A +G V + LL A+V+ D + +TAL A +G KE LLL +
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 321 VTLQNMDGKTPIDVAKLNSQHDVLKLL 347
++L + DG T + VA Q ++ +L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEA-GANVDALDKNK 295
S G + +K LA AD + +D +G TAL AC +G + A +LL ++ D++
Sbjct: 191 VSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG 250
Query: 296 NTALHYAAGYGRKECVALL 314
+TAL A G+ E ++L
Sbjct: 251 STALMVALDAGQSEIASML 269
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPI---DVAKLNSQHDV 343
V+ D N NTALHY+ + V LL++G V QN G +PI +A L +Q D+
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 344 LKLLE 348
+L+
Sbjct: 164 ETVLQ 168
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G+ E ++ A+ D + + EG TALH A L+ AGANV++ D +
Sbjct: 29 ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW 88
Query: 297 TALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPID 333
T LH AA L+++GAA+ + DG T +
Sbjct: 89 TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 274 EVKCAQILLEAGANVDALDKNKN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
+V Q LLE GANV+ ++ T LH A R++ V LLL +GA L+ +G TP
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 333 DVAKLNSQHDVLKLL 347
+A + +LKL
Sbjct: 97 ILAAIAGSVKLLKLF 111
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 57/147 (38%), Gaps = 48/147 (32%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + LK L+ GAD +E D G TA A YG+VK + L + GANV+ K K
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159
Query: 297 ----------TALHYAAGYGRKECVA---------------------------------- 312
TAL AA G E +
Sbjct: 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 219
Query: 313 ----LLLENGAAVTLQNMDGKTPIDVA 335
LLL++GA V ++ GKTP+ +A
Sbjct: 220 AITHLLLDHGADVNVRGERGKTPLILA 246
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GAD G T A G VK ++ L GA+V+ D TA AA YG+
Sbjct: 79 LRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138
Query: 309 ECVALLLENGAAVTLQN 325
+ + L + GA V L+
Sbjct: 139 KALKFLYKRGANVNLRR 155
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKD-EEDSEGRTALHFACGYGEVKCAQILLEAGA 286
ED ++ D + ++ L GA+ + +E+ G T LH A ++LL GA
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
+ KN T AA G + + L L GA V + G T A + + LK
Sbjct: 84 DPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 143
Query: 347 LEK 349
L K
Sbjct: 144 LYK 146
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 274 EVKCAQILLEAGANVDALDKNKN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 332
+V Q LLE GANV+ ++ T LH A R++ V LLL +GA L+ +G TP
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 333 DVAKLNSQHDVLKLL 347
+A + +LKL
Sbjct: 77 LLAAIAGSVKLLKLF 91
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 57/147 (38%), Gaps = 48/147 (32%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN 296
A G + LK L+ GAD +E D G TA A YG+VK + L + GANV+ K K
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 297 ----------TALHYAAGYGRKECVA---------------------------------- 312
TAL AA G E +
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 313 ----LLLENGAAVTLQNMDGKTPIDVA 335
LLL++GA V ++ GKTP+ +A
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILA 226
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GAD G T A G VK ++ L GA+V+ D TA AA YG+
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118
Query: 309 ECVALLLENGAAVTLQN 325
+ + L + GA V L+
Sbjct: 119 KALKFLYKRGANVNLRR 135
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKD-EEDSEGRTALHFACGYGEVKCAQILLEAGA 286
ED ++ D + ++ L GA+ + +E+ G T LH A ++LL GA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 346
+ KN T AA G + + L L GA V + G T A + + LK
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123
Query: 347 LEK 349
L K
Sbjct: 124 LYK 126
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHY---------------A 302
E EG+TALH A V + LL GA+V A + + HY A
Sbjct: 71 ELYEGQTALHIAVINQNVNLVRALLARGASVSA--RATGSVFHYRPHNLIYYGEHPLSFA 128
Query: 303 AGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL 337
A G +E V LL+E+GA + Q+ G T + + L
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D ++ G+TALH A GE + L AGA V ++ +TALH A C +LL
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 316 E 316
+
Sbjct: 99 Q 99
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLE 316
E+ +G T LH A + + + ++L +AGA+++ + T LH A + LLL+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 317 NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
GA T + G+TP+ A L + +LL
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLR 245
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
++ +H A +G+A ++ AAGA + G TALH AC CA +LL+
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGYGRKECVALLLEN 317
+G TALH A + LL A + LD + TALH AA G V L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
GA V + G T + +A H +L
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVL 97
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D ++ G+TALH A GE + L AGA V ++ +TALH A C +LL
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 316 E 316
+
Sbjct: 99 Q 99
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 258 EDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKN-KNTALHYAAGYGRKECVALLLE 316
E+ +G T LH A + + + ++L +AGA+++ + T LH A + LLL+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 317 NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 348
GA T + G+TP+ A L + +LL
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLR 245
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
++ +H A +G+A ++ AAGA + G TALH AC CA +LL+
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDALDKNKN---TALHYAAGYGRKECVALLLEN 317
+G TALH A + LL A + LD + TALH AA G V L
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 318 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
GA V + G T + +A H +L
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVL 97
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
DE D+EG T L+ A +++ A+ L++ GA+++ + ++ YA GR E +A +L
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 316 EN 317
++
Sbjct: 93 KH 94
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 251 AGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA-NVDALDKNKNTALHYAAGYGR-- 307
A D ++ + G AL A G + ++LLE G ++D + TAL A G
Sbjct: 95 ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN 154
Query: 308 ---KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 347
++ V LL+ENGA ++++ G+T +D A ++ K+L
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ D +H A G
Sbjct: 61 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 120
Query: 309 ECVALLLENGAAVTLQNMD--GKTPIDVAKLNSQHDVLKLLE 348
V+ L A L D G TP+++A D++ +L+
Sbjct: 121 AVVSFL---AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 159
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 36 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 94
Query: 316 ENGAAVTLQNMDGKTPIDVA 335
E+GA V + + G PI +A
Sbjct: 95 EHGADVNVPDGTGALPIHLA 114
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L GA + +D+ G + +H A G + ++L+E GA+V+ D +H A G
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114
Query: 309 ECVALLLENGAAVTLQNMD--GKTPIDVAKLNSQHDVLKLLE 348
V+ L A L D G TP+++A D++ +L+
Sbjct: 115 AVVSFL---AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 256 DEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVALLL 315
D + G+TAL +G A LL+ GA+ + D + + +H AA G + + +L+
Sbjct: 30 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 316 ENGAAVTLQNMDGKTPIDVA 335
E+GA V + + G PI +A
Sbjct: 89 EHGADVNVPDGTGALPIHLA 108
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGA 286
+E+ +H A G + ++ + G ++ G TALH AC +G V A+ L G
Sbjct: 18 DENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG- 76
Query: 287 NVDALDKNKNTALHYAAGYGRKECVALLLE 316
V +L + +H A + + V L+E
Sbjct: 77 EVHSLWHGQK-PIHLAVXANKTDLVVALVE 105
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 254 DKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRKECVAL 313
++ + D E +H A G+ + L+E G + ++ TALH A +G +
Sbjct: 12 NRIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Query: 314 LLENGAAVTLQNMDGKTPIDVAKLNSQHD-VLKLLE 348
L G +L + G+ PI +A ++ D V+ L+E
Sbjct: 72 LASVGEVHSLWH--GQKPIHLAVXANKTDLVVALVE 105
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVKCAQILLE 283
E+E +H A++ D + +K L +G D + D +G TAL++A G + ++ ++
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVK 116
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDALDKNKNTALHYAAGYGRK 308
L AGA K+ ++E LH A + K +ILL +G + D NTAL+YA G
Sbjct: 51 LNAGALKNLLENEF--PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNX 108
Query: 309 ECVALLLENGAAVTLQNMDGKT 330
+ V L ++ + GKT
Sbjct: 109 QTVKLFVKKNWRLXFY---GKT 127
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 261 EGRTALHFACGYGEVKCAQILLEAGANVDA------LDKNKNTALHY-------AAGYGR 307
G +ALH A ++C ++L+E GANV A K + T ++ AA +
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 308 KECVALLLEN 317
+ V+ LLEN
Sbjct: 154 WDVVSYLLEN 163
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 296 NTALHYAAGYGRKECVALLLENGAAVTLQNMD-------------GKTPIDVAKLNSQHD 342
++ALH A +CV LL+ENGA V + G+ P+ +A Q D
Sbjct: 96 HSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWD 155
Query: 343 VLKLL 347
V+ L
Sbjct: 156 VVSYL 160
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 253 ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA------LDKNKNTALHY----- 301
A +E +G +ALH A ++C ++L+E GA+V K++ T ++
Sbjct: 94 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 153
Query: 302 --AAGYGRKECVALLLEN 317
AA + + V LLEN
Sbjct: 154 SLAACTKQWDVVTYLLEN 171
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 296 NTALHYAAGYGRKECVALLLENGAAVTLQNMD-------------GKTPIDVAKLNSQHD 342
++ALH A +CV LL+ENGA V L+ G+ P+ +A Q D
Sbjct: 104 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 163
Query: 343 VLKLL 347
V+ L
Sbjct: 164 VVTYL 168
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 259 DSEGRTALHFACGYGEVKCAQILLEAGANVDALD 292
D++GR + A G E++ A++L+EAG +V LD
Sbjct: 130 DNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVLD 163
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 253 ADKDEEDSEGRTALHFACGYGEVKCAQILLEAGANVDA------LDKNKNTALHY----- 301
A +E +G +ALH A ++C ++L+E GA+V K++ T ++
Sbjct: 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Query: 302 --AAGYGRKECVALLLEN 317
AA + + V LLEN
Sbjct: 141 SLAACTKQWDVVTYLLEN 158
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 296 NTALHYAAGYGRKECVALLLENGAAVTLQNMD-------------GKTPIDVAKLNSQHD 342
++ALH A +CV LL+ENGA V L+ G+ P+ +A Q D
Sbjct: 91 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150
Query: 343 VLKLL 347
V+ L
Sbjct: 151 VVTYL 155
>pdb|2YCN|A Chain A, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCN|B Chain B, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2EZ2|A Chain A, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ2|B Chain B, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLF|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLF|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLH|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
pdb|2YCT|A Chain A, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
pdb|2YCT|B Chain B, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
Length = 456
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2EZ1|A Chain A, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ1|B Chain B, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLH|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
Length = 456
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2YCP|A Chain A, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|B Chain B, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|C Chain C, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|D Chain D, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 288 VDALDKNKNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 335
++A D N +T L+ AA G V LL+ GA + N G P+D
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 299 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 339
L AA GR E V LLE GA N G+ PI V + S
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGS 56
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 299 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 339
L AA GR E V LLE GA N G+ PI V + S
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.126 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,765,252
Number of Sequences: 62578
Number of extensions: 383488
Number of successful extensions: 1526
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 398
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)