BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018582
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 242/351 (68%), Positives = 294/351 (83%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+TEKAE LL KMKELN+ SSM +NSLMTLY KTG EK+PA+IQE+KA ++MPDSYTYN
Sbjct: 138 LTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYN 197
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
VWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIYV+AGL +KAE+AL+ELE
Sbjct: 198 VWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEM 257
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
+N RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N++YLNMIQVLV L DLPG
Sbjct: 258 KNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPG 317
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
AE FKEW++ C+TYDIR+ NV+IGAYA+EG ++ A ELKE+A RRG NAKTWEIF D
Sbjct: 318 AETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMD 377
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
YY+++GDM A++C+ KA+ G+GDGGKW+PS ET+R M +FEQ+KDV+GAE LEILK
Sbjct: 378 YYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILK 437
Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
D++G E+FEPLIRTYAAAG++ P M RRLKME VEV+EA+KKLL+ +
Sbjct: 438 NGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLLDEVS 488
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
Query: 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL 153
T+ +L + Y + L EKAE L +++ N +Y L+TLY +TG +V + + L
Sbjct: 125 TYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQEL 184
Query: 154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE-SGCATYDIRVTNVMIGAYAKEGR 212
+ + +Y ++ L D+ G E+ +E G D + M Y G
Sbjct: 185 KAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGL 244
Query: 213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 248
+ AE+ + + + ++ Y R G +
Sbjct: 245 SQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKL 280
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/349 (41%), Positives = 210/349 (60%), Gaps = 1/349 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EKA+A E M ELN +S+PFN++M++Y + PEK+P ++ MK I P TY++W
Sbjct: 189 EKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIW 248
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
M++ ++ND+ G E++I+EM +D W TFSNLA+IY +AGL+EKA+ ALK +E +
Sbjct: 249 MQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKM 308
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
+ ++ FL++LY EVYR+W SL+ A P N+SYL M+Q + L DL G +
Sbjct: 309 NPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIK 368
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
K F EWES C YD+R+ N+ I Y K E AE++ + A ++ P +K ++ +
Sbjct: 369 KIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHL 428
Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302
L N LA+ LE A+ + +W SSE + F HFE+ KDVDGAE F +IL
Sbjct: 429 LENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSN- 487
Query: 303 VDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
L E LI+TYAAA +TSP M RL +++EVSE + LL+ +C
Sbjct: 488 WKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTVC 536
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 209/350 (59%), Gaps = 8/350 (2%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KA+A E M +LN +S+PFN+LM +Y G PEK+PA++ MK SI P TY++W+
Sbjct: 158 KAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWI 217
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
++ ++ D+ G E+V++EMK +G W TF+NLA+IY++ GL+ KAE ALK LEN N
Sbjct: 218 QSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLEN-NM 276
Query: 124 HRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
+ D+ Y FLI LY N SEVYR+W L+ +PN N SYL M++ L L D+ G +
Sbjct: 277 NPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVK 336
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
K F EWES C TYD+R+ NV I +Y K+ E AE + A ++ +K ++ +
Sbjct: 337 KVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHL 396
Query: 243 LRNGDMKLAVDCLEKAI-DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301
L+N LA+ E A+ D + W SSE I +F HFE+ KDVDGAE F + L K
Sbjct: 397 LKNDQADLALKHFEAAVLDQDKN----WTWSSELISSFFLHFEEAKDVDGAEEFCKTLTK 452
Query: 302 AVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
L E + L++TY AAG+ P M +RL+ + + V E + LL IC
Sbjct: 453 -WSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKIC 501
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 199/347 (57%), Gaps = 7/347 (2%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+++KAEAL EKM E S +P+N ++++Y G EK+P +I+E+K + PD TYN
Sbjct: 177 LSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYN 235
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+W+ A A+ ND+ GAE+V + K + ++ DW T+S L ++Y + EKA ALKE+E
Sbjct: 236 LWLTAFASGNDVEGAEKVYLKAKEE-KLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEK 294
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
+ ++ AY LI+L+ G+ V W+ ++ +F + YL+MI +V L +
Sbjct: 295 LVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQ 354
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
A+ + EWES T D R+ N+++ Y + E+ ER +G +P+ TWEI +
Sbjct: 355 AKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTW 414
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
YL+ DM+ +DC KAID+ + KW + ++ + E++ +V GAE + +L+
Sbjct: 415 AYLKRKDMEKVLDCFGKAIDSVK----KWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQ 470
Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLL 347
KA + +++ L+RTYA AG + ++ R+ + VE+ E +K+L+
Sbjct: 471 KA-GYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELI 516
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL 118
Y V + ++ + ++ AE+ E+M R A T+ L YV+ L +KAE +++
Sbjct: 132 YAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTS---LLHSYVQNKLSDKAEALFEKM 188
Query: 119 ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-AFPNTANISYLNMIQVLVNLKD 177
+ Y ++++Y G +V + + L++ P+ ++Y + + D
Sbjct: 189 GECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRTSPDI--VTYNLWLTAFASGND 246
Query: 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 216
+ GAEK + + + D +V+ YAK +E A
Sbjct: 247 VEGAEKVYLKAKEEKLNPDWVTYSVLTNLYAKTDNVEKA 285
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 211 bits (538), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 171/302 (56%), Gaps = 2/302 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EKAEALL M++ +PFN +MTLY +K+ A++ EMK I D Y+YN+W
Sbjct: 186 EKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIW 245
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ + ++ + E V ++MK D + +WTTFS +A++Y++ G EKAE AL+++E R
Sbjct: 246 LSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARI 305
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
R+ Y +L++LYG GN E+YR+W + P+ N+ Y ++ LV + D+ GAE
Sbjct: 306 TGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAE 365
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
K ++EW ++YD R+ N+++ AY K +LE AE L + G P++ TWEI + +
Sbjct: 366 KVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGH 425
Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302
R + A+ CL A + G W P + F + E+E DV E LE+L+++
Sbjct: 426 TRKRCISEALTCLRNAF-SAEG-SSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQS 483
Query: 303 VD 304
D
Sbjct: 484 GD 485
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD--SYTY 59
TEKAE L K++ G + +P++ L++LY G+ +++ + K S++P + Y
Sbjct: 291 TEKAEDALRKVEARITGRNRIPYHYLLSLYGSLGNKKELYRVWHVYK--SVVPSIPNLGY 348
Query: 60 NVWMRALAAVNDISGAERVIEE 81
+ + +L + DI GAE+V EE
Sbjct: 349 HALVSSLVRMGDIEGAEKVYEE 370
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 180/337 (53%), Gaps = 3/337 (0%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M ++AEAL+EK+ L + PFN +M LY +G EK+ ++ MK + I + +YN
Sbjct: 158 MVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYN 217
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+WM A V+ ++ E V +EM D V W++ LA++Y+++G EKA L++ E
Sbjct: 218 LWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEK 277
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
+ Y FLITLY GN V R+W + + ++Y+ ++ LV DL
Sbjct: 278 MLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEE 337
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
AE+ F EWE+ C YD+RV+NV++GAY + G + AE L RG PN KTWEI +
Sbjct: 338 AERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILME 397
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
+++ +M+ A+D + + R W PS + +FE+E+ ++ A ++ L
Sbjct: 398 GWVKCENMEKAIDAMHQVFVLMR--RCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLH 455
Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 337
+ + + ++ L+R + A R + + +K++K+
Sbjct: 456 R-LGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 174/347 (50%), Gaps = 3/347 (0%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
EK+ EKMKE+ SS+ +N++M LY G EK+P +++EMK ++ PD+Y+Y +
Sbjct: 142 VEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRI 201
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ A A+ D+ + +M+R + DW T++ A Y++ G ++A LK ENR
Sbjct: 202 CINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENR 261
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
+D Y LITLY + G EV R+W + N YL ++Q LV + L A
Sbjct: 262 LEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEA 321
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
E+ EW+S YD RV N +I Y + E AE + E RRG ++WE+ +
Sbjct: 322 EEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATA 381
Query: 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301
Y G ++ A C++ A+ G KW P + + + E + E F+ L+
Sbjct: 382 YAEKGTLENAFKCMKTALGVEVG-SRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRN 440
Query: 302 AVDDLGVEVFEPLIRT-YAAAGRTSPVMLRRLKMEKVEVSEASKKLL 347
+ + +++ L++ GR +L+R+K +K+E+ E + +L
Sbjct: 441 CI-GVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 165/298 (55%), Gaps = 5/298 (1%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
KAE + ++MKEL +P+N ++ LY +TG + +++EM+ ++ PD +T N
Sbjct: 156 HKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTR 215
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR- 121
+ A + V+D+ G E+ + + D + DW T+++ A+ Y++AGL EKA L++ E
Sbjct: 216 LHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMV 275
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
NA + AY+ L++ YG G EVYR+W SL N Y+++I L+ + D+
Sbjct: 276 NAQKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEV 334
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
EK +EWE+G + +DIR+ +++I Y K+G +E AEE+ ++ + TWE +
Sbjct: 335 EKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALG 394
Query: 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299
Y G M+ AV+ ++AI+ + W P + + + + E ++D++G L +L
Sbjct: 395 YKMAGKMEKAVEKWKRAIEVSKPG---WRPHQVVLMSCVDYLEGQRDMEGLRKILRLL 449
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 5/179 (2%)
Query: 66 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR 125
+A V + AE+ E + + R ++ + L + Y + KAE+ +E++ +
Sbjct: 116 IAKVGGLGEAEKFFETIPMERR---NYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLK 172
Query: 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 185
Y ++ LY +TG + V ++ R + + + + D+ G EK
Sbjct: 173 GCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFL 232
Query: 186 KEWESGCATY-DIRVTNVMIGAYAKEGRLENA-EELKERARRRGADPNAKTWEIFSDYY 242
E+ + D R Y K G E A E L++ + A +E+ +Y
Sbjct: 233 MRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFY 291
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 161/333 (48%), Gaps = 15/333 (4%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KAEA +KM++L L +P+N++M+LY+ + EK+ ++ EMK + + D+ T N +
Sbjct: 156 KAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVL 215
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ +AV D++ E+ + + + + +W T ++A Y+ A KA + L+ E
Sbjct: 216 KLYSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVD 275
Query: 124 HRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
+ L SAY L+ LYG+ GN EV R+W+ + N Y +I+ L+ + D+ GAE
Sbjct: 276 QKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAE 335
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL---KERARRRGADPNAKTWEIFS 239
+ +K WES +D R+ ++ Y G E AE+L K RR P E +
Sbjct: 336 EIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWG 395
Query: 240 DYYLRNGDMKLAVDCLEKAIDTGRG-DGGKWVPSSETIRTFMRHF-------EQEKDVDG 291
D ++ D+K + L + + +W+ + ++ + E ++
Sbjct: 396 D-QMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEE 454
Query: 292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 324
AE + E + + + D V V L+ +YA + +
Sbjct: 455 AEKYFENIPENMKDYSVYV--ALLSSYAKSDKN 485
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP--EKIPAIIQEMKASSIMPDSYTYN 60
E+AE E + E +S + +L++ YAK+ + I++EM+ +++ PD T N
Sbjct: 453 EEAEKYFENIPENMKDYSV--YVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLITVN 510
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 115
++ AA + I E + + + + T +A YV+AGL +K+ R +
Sbjct: 511 HVLKVYAAESKIQAMEMFMRRWGTEDGIKLERGTMIAMAKAYVKAGLTKKSGRGV 565
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 2 TEKAEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
TE+AEAL +++ E + L F ++ +N +MTLY G EK+P +I+ +K + PD +TYN
Sbjct: 172 TERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYN 231
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK-ELE 119
+W+ + AA +I +++EEM+ D W + +L SIY+ + AE L E E
Sbjct: 232 LWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAE 291
Query: 120 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 179
+ R+ Y FL+ L+ GN + +IW+SLR ++ SY+ ++ + L L
Sbjct: 292 KSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLR 351
Query: 180 GAEKCFKEW-ESGCATYDIRVTNVMIGAYAKEG 211
AE+ +W ES +D ++ A+ G
Sbjct: 352 EAEEIIHQWKESKTTEFDASACLRILNAFRDVG 384
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 26/344 (7%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
+K+E + KMK+L S + ++ L+ + +KI ++ M+ +I P TY +
Sbjct: 245 VKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKI 303
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ A NDISG E+++E MK +G V D+ T + A Y AGL +KAE+ LKE+E
Sbjct: 304 LIDVKGATNDISGMEQILETMKDEG-VELDFQTQALTARHYSGAGLKDKAEKVLKEMEGE 362
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
+ + A++ L+++Y G EV RIW ++ L IQ L + A
Sbjct: 363 SLEANRRAFKDLLSIYASLGREDEVKRIW---KICESKPYFEESLAAIQAFGKLNKVQEA 419
Query: 182 EKCFK-----EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE 236
E F+ + + +TY +V++ Y L ++L +R G A TW+
Sbjct: 420 EAIFEKIVKMDRRASSSTY-----SVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWD 474
Query: 237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF---MRHFEQEKDVDGAE 293
Y+ G+++ A L+KA K + + +F M + + DV E
Sbjct: 475 ALIKLYVEAGEVEKADSLLDKA--------SKQSHTKLMMNSFMYIMDEYSKRGDVHNTE 526
Query: 294 GFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 337
+++A + F+ L++ Y A + M RLK + +
Sbjct: 527 KIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNI 570
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 96/208 (46%), Gaps = 5/208 (2%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+ +KAE +L++M+ +L + F L+++YA G +++ I + ++ +S
Sbjct: 348 LKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGREDEVKRIWKICESKPYFEESL--- 404
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
++A +N + AE + E++ + R A+ +T+S L +YV+ + K + +K +
Sbjct: 405 AAIQAFGKLNKVQEAEAIFEKIVKMDRRASS-STYSVLLRVYVDHKMLSKGKDLVKRMAE 463
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIW-RSLRLAFPNTANISYLNMIQVLVNLKDLP 179
+ + + LI LY + G + + + ++ + + S++ ++ D+
Sbjct: 464 SGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVH 523
Query: 180 GAEKCFKEWESGCATYDIRVTNVMIGAY 207
EK F + T +R ++ AY
Sbjct: 524 NTEKIFLKMREAGYTSRLRQFQALMQAY 551
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 10/333 (3%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
AEA+ KMK+L S+ N ++ LY + +KI ++ ++ ++ P+ TY + +
Sbjct: 246 AEAVFNKMKDLGFPLSTFTCNQMLILYKRVD-KKKIADVLLLLEKENLKPNLNTYKILID 304
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
+ NDI+G E+++E MK +G V D + +A Y AGL EKAE+ LKE+E +
Sbjct: 305 TKGSSNDITGMEQIVETMKSEG-VELDLRARALIARHYASAGLKEKAEKVLKEMEGESLE 363
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184
+ + L+++YG EV R+W ++ N L I + + AE
Sbjct: 364 ENRHMCKDLLSVYGYLQREDEVRRVW---KICEENPRYNEVLAAILAFGKIDKVKDAEAV 420
Query: 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244
F++ V +V++ Y + ++L ++ G + A TW+ Y+
Sbjct: 421 FEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVE 480
Query: 245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304
G+++ A L KAI + + P + M + + DV E + +K+A
Sbjct: 481 AGEVEKAESSLSKAIQS-----KQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGY 535
Query: 305 DLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 337
++ LI+ Y A + M R+K + +
Sbjct: 536 QSRFWAYQTLIQAYVNAKAPAYGMKERMKADNI 568
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 121/306 (39%), Gaps = 48/306 (15%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+ EKAE + E+++E L +N+LM Y++ G+P I M+ PD +YN
Sbjct: 314 LCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYN 373
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ + A S AE V EEMKR G +A + L S Y +A K E +KE+
Sbjct: 374 IMVDAYGRAGLHSDAEAVFEEMKRLG-IAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSE 432
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
D ++ LYG+ G +++
Sbjct: 433 NGVEPDTFVLNSMLNLYGRLGQFTKM---------------------------------- 458
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
EK E E+G T DI N++I Y K G LE EEL + + P+ TW
Sbjct: 459 -EKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIG 517
Query: 241 YYLRNGDMKLAVDCL---EKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 297
Y R KL V CL E+ ID+G P T + + E+ V+ L
Sbjct: 518 AYSRK---KLYVKCLEVFEEMIDSG------CAPDGGTAKVLLSACSSEEQVEQVTSVLR 568
Query: 298 ILKKAV 303
+ K V
Sbjct: 569 TMHKGV 574
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 17/210 (8%)
Query: 47 MKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 106
++ SS PD +N+ + A AE + ++ + R T++ L Y AG
Sbjct: 146 LRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQL-LESRYVPTEDTYALLIKAYCMAG 204
Query: 107 LFEKAERALKELENRNAHRD---LSAYQ-FLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 162
L E+AE L E++N + ++ Y ++ L + GN E +++ ++
Sbjct: 205 LIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTT 264
Query: 163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGC------ATYDIRVTNVMIGAYAKEGRLENA 216
+Y +++NL A K + W+ C +I ++ A+A+EG E A
Sbjct: 265 ETY----NLMINLYG--KASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKA 318
Query: 217 EELKERARRRGADPNAKTWEIFSDYYLRNG 246
EE+ E+ + G +P+ + + Y R G
Sbjct: 319 EEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 148/348 (42%), Gaps = 26/348 (7%)
Query: 1 MTEKAEALLEKMKELNLGFSSMP---FNSLM-TLYAKTGHPEKIPAIIQEMKASSIMPDS 56
+ E+AE +L +M+ ++ ++ +N+ + L + G+ E+ + Q MK P +
Sbjct: 205 LIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTT 264
Query: 57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK 116
TYN+ + + + ++ EM R + + T++ L + + GL EKAE +
Sbjct: 265 ETYNLMINLYGKASKSYMSWKLYCEM-RSHQCKPNICTYTALVNAFAREGLCEKAEEIFE 323
Query: 117 ELENRNAHRDLSAYQFLITLYGQTG---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173
+L+ D+ Y L+ Y + G +E++ + + + P+ A SY M+
Sbjct: 324 QLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCE-PDRA--SYNIMVDAYG 380
Query: 174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK 233
AE F+E + ++ +++ AY+K + E + + G +P+
Sbjct: 381 RAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTF 440
Query: 234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 293
+ Y R G L + ++ G P + I T+ ++ G
Sbjct: 441 VLNSMLNLYGRLGQFTKMEKILAE-MENG--------PCTADISTYNILI----NIYGKA 487
Query: 294 GFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE 341
GFLE +++ +L + F P + T+ + R ++L ++ +EV E
Sbjct: 488 GFLERIEELFVELKEKNFRPDVVTWTS--RIGAYSRKKLYVKCLEVFE 533
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 151/343 (44%), Gaps = 3/343 (0%)
Query: 9 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA 68
++KM+EL S + +N L+ + G + I + MKA P TY++ M+ A
Sbjct: 189 MKKMRELGYRTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEAN 248
Query: 69 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS 128
++I G + + MK+ G V + ++ LA + A L+ AE +E+E + S
Sbjct: 249 EHNIDGVLKAFDGMKKAG-VEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWS 307
Query: 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188
L+ LYG+ G E+ R W +R F + + SYL + + +L AE+ + E
Sbjct: 308 TLDILMILYGRLGKEKELARTWNVIR-GFHHVRSKSYLLATEAFARVGNLDRAEELWLEM 366
Query: 189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 248
++ + N ++ Y K+G +E A + G PN+ T+ + + M
Sbjct: 367 KNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLM 426
Query: 249 KLAVDCLEKAIDTGRGDG-GKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 307
K A+ +E ++ G P ET + + F ++ DV+ +E E +K A +
Sbjct: 427 KEALKNIEMGLNLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRY 486
Query: 308 VEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAI 350
V+ L + Y A P + +R+ + S LL+ +
Sbjct: 487 AFVYNALFKAYVKAKVYDPNLFKRMVLGGARPDAESYSLLKLV 529
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
++AE L +MK + + FNSL+++Y K G EK + +EM + P+S TY
Sbjct: 357 DRAEELWLEMKNVKGLKETEQFNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHL 416
Query: 63 MRALAAVNDISGAERVIE---EMKRDGRVAAD--W--TTFSNLASIYVEAGLFEKAERAL 115
A + A + IE +K + + W TT S + + E G E +E+
Sbjct: 417 ALGCAKAKLMKEALKNIEMGLNLKTSKSIGSSTPWLETTLS-IIECFAEKGDVENSEKLF 475
Query: 116 KELENRNAHRDLSAYQFLITLY 137
+E++N +R Y L Y
Sbjct: 476 EEVKNAKYNRYAFVYNALFKAY 497
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 36/238 (15%)
Query: 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 84
N+L+ + K G E++ + ++MK + I P YTYN M L + + AERV E M+
Sbjct: 191 NALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVME- 249
Query: 85 DGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 144
GR+ D T++ + Y +AG +KA L+++E R D
Sbjct: 250 SGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEAD------------------ 291
Query: 145 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 204
I+Y+ MIQ D ++E + +++I
Sbjct: 292 -----------------KITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVI 334
Query: 205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
G KEG+L + E R+G+ PN + + D Y ++G ++ A+ L + ID G
Sbjct: 335 GGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 106/274 (38%), Gaps = 37/274 (13%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+ AE + E M+ + + +N+++ Y K G +K +++M+ D TY
Sbjct: 237 FVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYM 296
Query: 61 VWMRALAAVNDISGAERVIEEMK-------------------RDGRVAADWTTFSN---- 97
++A A +D + +EM ++G++ +T F N
Sbjct: 297 TMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRK 356
Query: 98 -----------LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEV 146
L Y ++G E A R L + + D+ Y ++ + G + E
Sbjct: 357 GSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEA 416
Query: 147 YRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW-ESGCATYDIRVTNVMIG 205
+ + R ++ Y ++I L + AE+ F+E E GC T D N +I
Sbjct: 417 LDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGC-TRDSYCYNALID 475
Query: 206 AYAKEGRLENAEELKERA-RRRGADPNAKTWEIF 238
A+ K +++ A L +R G D T+ I
Sbjct: 476 AFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTIL 509
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 102/266 (38%), Gaps = 40/266 (15%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M E+ + KMKE + + +N LM + + + M++ I PD TYN
Sbjct: 202 MVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYN 261
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
++ A + +M+ G A T + + + Y ++ F +E++
Sbjct: 262 TMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSD-FGSCVALYQEMDE 320
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
+ A+ +I + G L+E Y ++ NMI+ G
Sbjct: 321 KGIQVPPHAFSLVIGGLCKEGKLNEGYTVFE---------------NMIR--------KG 357
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
++ ++ + V+I YAK G +E+A L R G P+ T+ + +
Sbjct: 358 SKP------------NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVN 405
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDG 266
+NG ++ A+D T R DG
Sbjct: 406 GLCKNGRVEEALD----YFHTCRFDG 427
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 120/276 (43%), Gaps = 10/276 (3%)
Query: 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81
+P +L+ + + G K I++ ++ S +PD TYNV + +I+ A V++
Sbjct: 138 IPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDR 197
Query: 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 141
M V+ D T++ + ++G ++A L + R+ + D+ Y LI +
Sbjct: 198 MS----VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS 253
Query: 142 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 201
+ ++ +R ++Y ++ + L A K + S ++ N
Sbjct: 254 GVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHN 313
Query: 202 VMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261
+++ + GR +AE+L R+G P+ T+ I ++ R G + A+D LEK
Sbjct: 314 IILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQH 373
Query: 262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 297
G P+S + + F +EK +D A +LE
Sbjct: 374 G------CQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 106/266 (39%), Gaps = 36/266 (13%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A LL++M++ + +N L+ K G ++ + +M +S P+ T+N+ +R
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF---------------- 108
++ + AE+++ +M R G + TF+ L + GL
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ 376
Query: 109 ----------------EKAERALKELE---NRNAHRDLSAYQFLITLYGQTGNLSEVYRI 149
+K +RA++ LE +R + D+ Y ++T + G + + I
Sbjct: 377 PNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEI 436
Query: 150 WRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 209
L + I+Y +I L A K E + D + ++G ++
Sbjct: 437 LNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSR 496
Query: 210 EGRLENAEELKERARRRGADPNAKTW 235
EG+++ A + R G PNA T+
Sbjct: 497 EGKVDEAIKFFHEFERMGIRPNAVTF 522
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 105/242 (43%), Gaps = 7/242 (2%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+N+++ +G ++ ++ M PD TY + + A + + A ++++EM
Sbjct: 207 YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM- 265
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
RD D T++ L + + G ++A + L ++ + ++ + ++ TG
Sbjct: 266 RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRW 325
Query: 144 SEVYRIWRS-LRLAFPNTANISYLNMIQVLVNLKDLPG--AEKCFKEWESGCATYDIRVT 200
+ ++ LR F + ++ N++ + K L G + K + GC +
Sbjct: 326 MDAEKLLADMLRKGF--SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSY- 382
Query: 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 260
N ++ + KE +++ A E ER RG P+ T+ ++G ++ AV+ L +
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442
Query: 261 TG 262
G
Sbjct: 443 KG 444
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 1/148 (0%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+A +LEKM + +S+ +N L+ + K ++ ++ M + PD TYN +
Sbjct: 362 RAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
AL + A ++ ++ G + T++ + +AG KA + L E+ ++
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKG-CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDL 480
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWR 151
D Y L+ + G + E + +
Sbjct: 481 KPDTITYSSLVGGLSREGKVDEAIKFFH 508
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
E A +L ++ + +N+++ AK G K ++ EM+A + PD+ TY+
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSS 489
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ L+ + A + E +R G + + TF+++ ++ ++A L + NR
Sbjct: 490 LVGGLSREGKVDEAIKFFHEFERMG-IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR 548
Query: 122 NAHRDLSAYQFLI 134
+ ++Y LI
Sbjct: 549 GCKPNETSYTILI 561
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
++A LE+M + +N+++T K G E I+ ++ + P TYN
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 119
+ LA A ++++EM R + D T+S+L G ++A + E E
Sbjct: 456 IDGLAKAGKTGKAIKLLDEM-RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 2/233 (0%)
Query: 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
L ++M+EL + F +L+ +AK G + +++ EMK+SS+ D YNV + +
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249
Query: 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 127
V + A + E++ +G + D T++++ + +A ++A + LE
Sbjct: 250 KVGKVDMAWKFFHEIEANG-LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308
Query: 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187
AY +I YG G E Y + R + I+Y ++ L + + A K F+E
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE 368
Query: 188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
+ A ++ N++I + G+L+ A EL++ ++ G PN +T I D
Sbjct: 369 MKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVD 420
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 111/255 (43%), Gaps = 1/255 (0%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
+ A + EKM + + +S+ + SL+ + G E I ++M + PD N
Sbjct: 463 VDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNT 522
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+M + + + EE+K R D ++S L ++AG + ++ +
Sbjct: 523 YMDCMFKAGEPEKGRAMFEEIKAR-RFVPDARSYSILIHGLIKAGFANETYELFYSMKEQ 581
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
D AY +I + + G +++ Y++ ++ ++Y ++I L + L A
Sbjct: 582 GCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEA 641
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
F+E +S ++ + + +I + K GR++ A + E ++G PN TW D
Sbjct: 642 YMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701
Query: 242 YLRNGDMKLAVDCLE 256
++ ++ A+ C +
Sbjct: 702 LVKAEEINEALVCFQ 716
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 123/286 (43%), Gaps = 6/286 (2%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
+ A +LL++MK +L + +N + + K G + E++A+ + PD TY
Sbjct: 219 VDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ L N + A + E ++++ RV + ++ + Y AG F++A L+ +
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRRVPCTY-AYNTMIMGYGSAGKFDEAYSLLERQRAK 337
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-AFPNTANISYLNMIQVLVNLKDLPG 180
+ + AY ++T + G + E +++ ++ A PN + +Y +I +L L
Sbjct: 338 GSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLS--TYNILIDMLCRAGKLDT 395
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
A + + ++R N+M+ K +L+ A + E + P+ T+ D
Sbjct: 396 AFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLID 455
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE 286
+ G + A EK +D+ + + I+ F H +E
Sbjct: 456 GLGKVGRVDDAYKVYEKMLDSDCRTNS--IVYTSLIKNFFNHGRKE 499
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 107/259 (41%), Gaps = 8/259 (3%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KA LLE+MK + + + S++ AK ++ + +E K+ I + Y+ +
Sbjct: 605 KAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI 664
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
V I A ++EE+ + G + + T+++L V+A +A + ++
Sbjct: 665 DGFGKVGRIDEAYLILEELMQKG-LTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKC 723
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
+ Y LI + ++ + W+ ++ + ISY MI L ++ A
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243
F +++ D N MI + R +A L E RRRG + KT + D
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLH 843
Query: 244 RNGDMKLAVDCLEKAIDTG 262
+N DCLE+A G
Sbjct: 844 KN-------DCLEQAAIVG 855
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 1/193 (0%)
Query: 43 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102
++Q M+ P Y + A +AVN + ++M+ G F+ L +
Sbjct: 155 VVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG-YEPTVHLFTTLIRGF 213
Query: 103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 162
+ G + A L E+++ + D+ Y I +G+ G + ++ + +
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDE 273
Query: 163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 222
++Y +MI VL L A + F+ E N MI Y G+ + A L ER
Sbjct: 274 VTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER 333
Query: 223 ARRRGADPNAKTW 235
R +G+ P+ +
Sbjct: 334 QRAKGSIPSVIAY 346
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 122/265 (46%), Gaps = 9/265 (3%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T +AEAL E++++ + + +N+L+ Y KTG + +++ EM+ + PD +TY++
Sbjct: 320 TLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSL 379
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ A A V++EM+ G V + FS L + + + G ++K + LKE+++
Sbjct: 380 LIDAYVNAGRWESARIVLKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSI 438
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
D Y +I +G+ L + + +++ +I A
Sbjct: 439 GVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVA 498
Query: 182 EKCFKEWES----GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237
E+ F+ E CAT N+MI +Y + R ++ + L + + +G PN T
Sbjct: 499 EEMFEAMERRGCLPCAT----TYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTT 554
Query: 238 FSDYYLRNGDMKLAVDCLEKAIDTG 262
D Y ++G A++CLE+ G
Sbjct: 555 LVDVYGKSGRFNDAIECLEEMKSVG 579
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 9/320 (2%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KA LL + L + S+++ A +G + A+ +E++ S I P + YN +
Sbjct: 287 KALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALL 346
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ + AE ++ EM++ G V+ D T+S L YV AG +E A LKE+E +
Sbjct: 347 KGYVKTGPLKDAESMVSEMEKRG-VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDV 405
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
+ + L+ + G + +++ + ++ Y +I L A
Sbjct: 406 QPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMT 465
Query: 184 CFKEWESGCATYDIRVT-NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
F S D RVT N +I + K GR AEE+ E RRG P A T+ I + Y
Sbjct: 466 TFDRMLSEGIEPD-RVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 524
Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302
GD + D +++ + + G +P+ T T + + + + A LE +K
Sbjct: 525 ---GDQE-RWDDMKRLLGKMKSQG--ILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSV 578
Query: 303 VDDLGVEVFEPLIRTYAAAG 322
++ LI YA G
Sbjct: 579 GLKPSSTMYNALINAYAQRG 598
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 7/244 (2%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A A++ +++ NL FS S+ L G EK+ + ++ P TYN +
Sbjct: 150 AYAVVSWLQKHNLCFSYELLYSI--LIHALGRSEKLYEAFLLSQKQTLTP--LTYNALIG 205
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE--RALKELENRN 122
A A NDI A +I +M++DG +D+ +S + + + R KE+E
Sbjct: 206 ACARNNDIEKALNLIAKMRQDG-YQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDK 264
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D+ +I + ++G+ S+ ++ + + + +++I L + AE
Sbjct: 265 LELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAE 324
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
F+E R N ++ Y K G L++AE + +RG P+ T+ + D Y
Sbjct: 325 ALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAY 384
Query: 243 LRNG 246
+ G
Sbjct: 385 VNAG 388
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 9 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA 68
LE+MK + L SS +N+L+ YA+ G E+ + M + + P N + A
Sbjct: 572 LEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 631
Query: 69 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL 118
+ A V++ MK +G V D T++ L + F+K +E+
Sbjct: 632 DRRDAEAFAVLQYMKENG-VKPDVVTYTTLMKALIRVDKFQKVPVVYEEM 680
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
++E+A M L S + NSL+ + + + A++Q MK + + PD TY
Sbjct: 599 LSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYT 658
Query: 61 VWMRALAAVNDISGAERVIEEMKRDG 86
M+AL V+ V EEM G
Sbjct: 659 TLMKALIRVDKFQKVPVVYEEMIMSG 684
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 37/186 (19%)
Query: 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
LL KMK + + + +L+ +Y K+G ++EMK+ + P S YN + A
Sbjct: 536 LLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINA-- 593
Query: 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 127
Y + GL E+A A + + + L
Sbjct: 594 ----------------------------------YAQRGLSEQAVNAFRVMTSDGLKPSL 619
Query: 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187
A LI +G+ +E + + + ++ ++Y +++ L+ + ++E
Sbjct: 620 LALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEE 679
Query: 188 W-ESGC 192
SGC
Sbjct: 680 MIMSGC 685
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 116/267 (43%), Gaps = 6/267 (2%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M KA A+ E M E + + + FN+++ K G E++ I EMK +I TYN
Sbjct: 218 MMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYN 277
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ + + + A R +M+R G + +F+ L Y + GLF+ A E+ N
Sbjct: 278 ILINGFSKNGKMEEARRFHGDMRRSGFAVTPY-SFNPLIEGYCKQGLFDDAWGVTDEMLN 336
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
+ S Y I G + + + S +A P+ +SY ++ + +
Sbjct: 337 AGIYPTTSTYNIYICALCDFGRIDDARELLSS--MAAPDV--VSYNTLMHGYIKMGKFVE 392
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
A F + +G I N +I + G LE A+ LKE + P+ T+
Sbjct: 393 ASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVK 452
Query: 241 YYLRNGDMKLAVDCLEKAIDTG-RGDG 266
+++NG++ +A + ++ + G + DG
Sbjct: 453 GFVKNGNLSMATEVYDEMLRKGIKPDG 479
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 80/232 (34%), Gaps = 35/232 (15%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
E A+ L E+M + + + +L+ + K G+ + EM I PD Y Y
Sbjct: 426 EGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTR 485
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ D A R+ EEM VA D +
Sbjct: 486 AVGELRLGDSDKAFRLHEEM-----VATD------------------------------H 510
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
DL+ Y I + GNL + R + +++Y +I+ + A
Sbjct: 511 HAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMAR 570
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT 234
+ E + V+I +AK GRLE A + ++RG PN T
Sbjct: 571 NLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 622
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 1/213 (0%)
Query: 32 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD 91
+ G EK +I+E I P++YTYN + A D SG E V++ MK+DG V +
Sbjct: 235 CRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDG-VVYN 293
Query: 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 151
T++ L + V+ G AE+ E+ R D+ Y LI+ + GN+ + ++
Sbjct: 294 KVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFD 353
Query: 152 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 211
L + ++ +Y +I + + ++ AE E +S V N +I Y ++G
Sbjct: 354 ELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413
Query: 212 RLENAEELKERARRRGADPNAKTWEIFSDYYLR 244
++ A + + ++G + T + + R
Sbjct: 414 MVDEASMIYDVMEQKGFQADVFTCNTIASCFNR 446
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 1/231 (0%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
AE L ++M+E + + SL++ + G+ ++ + E+ + P SYTY +
Sbjct: 313 AEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALID 372
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
+ V ++ AE ++ EM+ G V F+ L Y G+ ++A +E +
Sbjct: 373 GVCKVGEMGAAEILMNEMQSKG-VNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQ 431
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184
D+ + + + + E + + + +SY N+I V ++ A++
Sbjct: 432 ADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRL 491
Query: 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
F E S + NVMI AY K+G+++ A +L+ G DP++ T+
Sbjct: 492 FVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTY 542
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 101/236 (42%), Gaps = 11/236 (4%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
AE L+ +M+ + + + FN+L+ Y + G ++ I M+ D +T N
Sbjct: 383 AEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIAS 442
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
+ A++ + M +G V +++NL +Y + G E+A+R E+ ++
Sbjct: 443 CFNRLKRYDEAKQWLFRM-MEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184
+ Y +I Y + G + E ++ ++ + + +Y ++I ++ A +
Sbjct: 502 PNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRL 561
Query: 185 FKEW-----ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
F E + TY VMI +K G+ + A L + +R+G + K +
Sbjct: 562 FSEMGLKGLDQNSVTY-----TVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNKVY 612
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 42/288 (14%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
EK++ L+++ + + +N+++ Y K + +++ MK ++ + TY +
Sbjct: 240 VEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTL 299
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-------LFEK---- 110
M +S AE++ +EM+ G + +D +++L S G LF++
Sbjct: 300 LMELSVKNGKMSDAEKLFDEMRERG-IESDVHVYTSLISWNCRKGNMKRAFLLFDELTEK 358
Query: 111 ------------------------AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEV 146
AE + E++++ + + LI Y + G + E
Sbjct: 359 GLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEA 418
Query: 147 YRIWRSL-RLAFPNTANISYLNMIQVLVN-LKDLPGAEK-CFKEWESGCATYDIRVTNVM 203
I+ + + F A++ N I N LK A++ F+ E G + TN +
Sbjct: 419 SMIYDVMEQKGFQ--ADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTN-L 475
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 251
I Y KEG +E A+ L +G PNA T+ + Y + G +K A
Sbjct: 476 IDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEA 523
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
++A+ L +M E + S++ + +L+ +Y K G+ E+ + EM + + P++ TYNV
Sbjct: 451 DEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVM 510
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ A I A ++ M+ +G + D T+++L A ++A R E+ +
Sbjct: 511 IYAYCKQGKIKEARKLRANMEANG-MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKG 569
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154
++ Y +I+ + G E + ++ ++
Sbjct: 570 LDQNSVTYTVMISGLSKAGKSDEAFGLYDEMK 601
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 142/337 (42%), Gaps = 16/337 (4%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KAE + KMKEL S N L+ LY+ +KI ++ M+ +I P TY+ +
Sbjct: 260 KAEDIFNKMKELKFPTSVFACNQLLLLYSMHDR-KKISDVLLLMERENIKPSRATYHFLI 318
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ DI+G E+++E +K +G + D S LA Y+ AGL E+A+ +KE+E +
Sbjct: 319 NSKGLAGDITGMEKIVETIKEEG-IELDPELQSILAKYYIRAGLKERAQDLMKEIEGKGL 377
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV---NLKDLPG 180
+ + L+ LY G+ V R+ R + N Y N I + LK++
Sbjct: 378 QQTPWVCRSLLPLYADIGDSDNVRRLSRFV------DQNPRYDNCISAIKAWGKLKEVEE 431
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
AE F+ + + ++ Y + L +L +R G TW
Sbjct: 432 AEAVFERLVEKYKIFPMMPYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVK 491
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
Y++ G++ A L +A K P T + + + DV E +K
Sbjct: 492 LYIKAGEVGKAELILNRATKD-----NKMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMK 546
Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 337
+A + +E ++ Y A + M+ R+K + V
Sbjct: 547 RASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNV 583
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 1/262 (0%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M + A + L+KM++ + + +++L+ L + K +I +K S I PD YN
Sbjct: 205 MFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYN 264
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ A +I+EM G V + ++S L S+YVE F +A E++
Sbjct: 265 SMINVYGKAKLFREARLLIKEMNEAG-VLPNTVSYSTLLSVYVENHKFLEALSVFAEMKE 323
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
N DL+ +I +YGQ + E R++ SLR +SY +++V +
Sbjct: 324 VNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGE 383
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
A F+ + ++ N MI Y K E A L + + RG +PNA T+
Sbjct: 384 AIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIIS 443
Query: 241 YYLRNGDMKLAVDCLEKAIDTG 262
+ + G + A +K +G
Sbjct: 444 IWGKAGKLDRAATLFQKLRSSG 465
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 130/306 (42%), Gaps = 15/306 (4%)
Query: 42 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101
+ EM+ ++ PD YTY+ + + A +++M++D RV+ D +SNL +
Sbjct: 176 GLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQD-RVSGDLVLYSNLIEL 234
Query: 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FPN 159
+ KA L+ DL AY +I +YG+ E + + + A PN
Sbjct: 235 SRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPN 294
Query: 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 219
T +SY ++ V V A F E + D+ N+MI Y + ++ A+ L
Sbjct: 295 T--VSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRL 352
Query: 220 KERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET-IRT 278
R+ +PN ++ Y G+ +L + + R D + V + T I+
Sbjct: 353 FWSLRKMDIEPNVVSYNTILRVY---GEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKI 409
Query: 279 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT--SPVMLRRLKMEK 336
+ + E EK + + E+ + ++ + + +I + AG+ + + ++L+
Sbjct: 410 YGKTMEHEKATNLVQ---EMQSRGIEPNAI-TYSTIISIWGKAGKLDRAATLFQKLRSSG 465
Query: 337 VEVSEA 342
VE+ +
Sbjct: 466 VEIDQV 471
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 115/242 (47%), Gaps = 22/242 (9%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EKA L+++M+ + +++ ++++++++ K G ++ + Q++++S + D Y
Sbjct: 417 EKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTM 476
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ A V + A+R++ E+K + + +I +AG E+A ++
Sbjct: 477 IVAYERVGLMGHAKRLLHELKLPDNIPRE-----TAITILAKAGRTEEATWVFRQAFESG 531
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FPNTANISYLNMIQVLVNL----K 176
+D+S + +I LY + V ++ +R A FP++ N+I +++N +
Sbjct: 532 EVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDS------NVIAMVLNAYGKQR 585
Query: 177 DLPGAEKCFKEW-ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
+ A+ ++E E GC D V M+ Y+ + E E L +R +DPN +
Sbjct: 586 EFEKADTVYREMQEEGCVFPD-EVHFQMLSLYSSKKDFEMVESLFQRLE---SDPNVNSK 641
Query: 236 EI 237
E+
Sbjct: 642 EL 643
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
F ++ LY++ + + ++M+ + PDS + + A + A+ V EM+
Sbjct: 539 FGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 598
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
+G V D F L S+Y FE E + LE+ + + LY + L
Sbjct: 599 EEGCVFPDEVHFQML-SLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADKL 657
Query: 144 SEVYRIWRSLR 154
++ R+ +R
Sbjct: 658 NDASRVMNRMR 668
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 9/292 (3%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
F +M YA+ ++ M+ + P+ +N + AL ++ A+ V E M+
Sbjct: 171 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 230
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
R D T+S L + + KA +E+ + H D+ Y ++ + + G +
Sbjct: 231 --DRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRV 288
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203
E I RS+ + Y ++ L A F E E D+ V N +
Sbjct: 289 DEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSL 348
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263
IGA+ K R++N + + + +G PN+K+ I + + G+ A D K I
Sbjct: 349 IGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCE 408
Query: 264 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI 315
P ++T ++ F ++K+++ A+ + ++K + F LI
Sbjct: 409 -------PDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLI 453
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 101/233 (43%), Gaps = 4/233 (1%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KA + +M + + ++ ++ + K G ++ I++ M S P ++ Y+V +
Sbjct: 255 KAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLV 314
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
N + A EM+R G + AD F++L + +A + R LKE++++
Sbjct: 315 HTYGTENRLEEAVDTFLEMERSG-MKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGV 373
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSL-RLAFPNTANISYLNMIQVLVNLKDLPGAE 182
+ + ++ + G E + ++R + ++ P+ +Y +I++ K++ A+
Sbjct: 374 TPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDAD--TYTMVIKMFCEKKEMETAD 431
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
K +K + +V+I +E + A L E G P+ T+
Sbjct: 432 KVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTF 484
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 5/253 (1%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
E A L ++M + +N+L+ K G + I+ +M IMP+ +Y+
Sbjct: 356 EAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTV 415
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ A A + EM+ G +A D +++ L SIY + G E+A L+E+ +
Sbjct: 416 IDGFAKAGRFDEALNLFGEMRYLG-IALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR--LAFPNTANISYLNMIQVLVNLKDLPG 180
+D+ Y L+ YG+ G EV +++ ++ PN ++Y +I
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNL--LTYSTLIDGYSKGGLYKE 532
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
A + F+E++S D+ + + +I A K G + +A L + + G PN T+ D
Sbjct: 533 AMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592
Query: 241 YYLRNGDMKLAVD 253
+ R+ M + D
Sbjct: 593 AFGRSATMDRSAD 605
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 110/275 (40%), Gaps = 37/275 (13%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN-DISGAERVIEEM 82
F++L++ Y ++G E+ ++ MK + P+ TYN + A + + +EM
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Query: 83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 142
+R+G V D TF++L ++ GL+E A E+ NR +D+ +Y L+ + G
Sbjct: 331 QRNG-VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQ 389
Query: 143 LSEVYRIWRSL--RLAFPNTAN---------------------------------ISYLN 167
+ + I + + PN + +SY
Sbjct: 390 MDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNT 449
Query: 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227
++ + + A +E S D+ N ++G Y K+G+ + +++ +R
Sbjct: 450 LLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREH 509
Query: 228 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
PN T+ D Y + G K A++ + G
Sbjct: 510 VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAG 544
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 1/142 (0%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
+E+A +L +M + + + +N+L+ Y K G +++ + EMK ++P+ TY+
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYST 519
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ + A + E K G + AD +S L + GL A + E+
Sbjct: 520 LIDGYSKGGLYKEAMEIFREFKSAG-LRADVVLYSALIDALCKNGLVGSAVSLIDEMTKE 578
Query: 122 NAHRDLSAYQFLITLYGQTGNL 143
++ Y +I +G++ +
Sbjct: 579 GISPNVVTYNSIIDAFGRSATM 600
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 113/241 (46%), Gaps = 1/241 (0%)
Query: 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
+L++MKE + +NSL+ +K ++ + + EM + + P+++TY ++
Sbjct: 474 VLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYI 533
Query: 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 127
++ + A++ ++EM+ G V + + L + Y + G +A A + + ++ D
Sbjct: 534 EASEFASADKYVKEMRECG-VLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDA 592
Query: 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187
Y L+ + + + I+R +R SY +I L ++ A F E
Sbjct: 593 KTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 247
T ++ + N+++G + + G +E A+EL + +G PNA T+ D Y ++GD
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 248 M 248
+
Sbjct: 713 L 713
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 143/357 (40%), Gaps = 59/357 (16%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EKA+AL + M L + + SL+ Y + + + ++ EMK +I+ YTY
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTV 423
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
++ + + D+ GA +++EM G + ++ L +++ F A R LKE++ +
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482
Query: 123 AHRDLSAYQFLITLYGQTGNLSE-----VYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177
D+ Y LI + + E V + L+ PN +Y I + +
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK---PNA--FTYGAFISGYIEASE 537
Query: 178 LPGAEKCFKEW-ESG------------------------CATY----------DIRVTNV 202
A+K KE E G C+ Y D + V
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597
Query: 203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
++ K ++++AEE+ R +G P+ ++ + + + + G+M+ A ++ ++ G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 263 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319
P+ + F + +++ A K+ +D++ V+ P TY
Sbjct: 658 ------LTPNVIIYNMLLGGFCRSGEIEKA-------KELLDEMSVKGLHPNAVTYC 701
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 41/254 (16%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
+ AE + +M+ + + L+ ++K G+ +K +I EM + P+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ +I A+ +++EM G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKG----------------------------------- 692
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
H + Y +I Y ++G+L+E +R++ ++L + Y ++ L D+ A
Sbjct: 693 -LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA 751
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER----ARRRGADPNAKTWEI 237
F + GCA+ N +I K G+ E E+ R + R PN T+ I
Sbjct: 752 ITIFGTNKKGCAS-STAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNI 810
Query: 238 FSDYYLRNGDMKLA 251
DY + G+++ A
Sbjct: 811 MIDYLCKEGNLEAA 824
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 126/301 (41%), Gaps = 11/301 (3%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+KA ++ ++M E L + + +N L+ + ++G EK ++ EM + P++ TY
Sbjct: 644 QKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTI 703
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL--EN 120
+ D++ A R+ +EMK G V D ++ L ERA+
Sbjct: 704 IDGYCKSGDLAEAFRLFDEMKLKGLV-PDSFVYTTLVD---GCCRLNDVERAITIFGTNK 759
Query: 121 RNAHRDLSAYQFLITL---YGQTGNLSEVY-RIWRSLRLAFPNTANISYLNMIQVLVNLK 176
+ + + LI +G+T +EV R+ F +++Y MI L
Sbjct: 760 KGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEG 819
Query: 177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE 236
+L A++ F + ++ + ++ Y K GR + + A G +P+ +
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYS 879
Query: 237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296
+ + +L+ G A+ +++ D G + S T R + F + +++ AE +
Sbjct: 880 VIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL-SISTCRALLSGFAKVGEMEVAEKVM 938
Query: 297 E 297
E
Sbjct: 939 E 939
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 38/223 (17%)
Query: 45 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL------ 98
+ M ++P YTY+V + L + + A+ ++ EM G V+ D T+S L
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLG-VSLDNHTYSLLIDGLLK 324
Query: 99 -----------------------------ASIYVEAGLFEKAERALKELENRNAHRDLSA 129
+ + G+ EKA+ + A
Sbjct: 325 GRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQA 384
Query: 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW- 188
Y LI Y + N+ + Y + ++ + +Y +++ + + DL GA KE
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI 444
Query: 189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 231
SGC ++ + +I + + R +A + + + +G P+
Sbjct: 445 ASGCRP-NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 140/319 (43%), Gaps = 24/319 (7%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
AE L ++M L S + +N+L+ Y K G+PEK + + MKA I P T+N ++
Sbjct: 233 AEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLK 292
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NA 123
L + AE V++EMK G V D TFS L Y EKAE AL E ++
Sbjct: 293 GLFKAGMVEDAENVLKEMKDLGFV-PDAFTFSILFDGYSSN---EKAEAALGVYETAVDS 348
Query: 124 HRDLSAY--QFLITLYGQTGNLSEVYRIW-RSLRLAF-PNTANISYLNMIQVLVNLKDLP 179
++AY L+ + G + + I R + PN + Y MI DL
Sbjct: 349 GVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPN--EVIYNTMIDGYCRKGDLV 406
Query: 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239
GA + E D N +I + + G +ENAE+ + + +G P+ +T+ I
Sbjct: 407 GARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILI 466
Query: 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299
Y R + D L++ D G +P+ + T + + + A +I+
Sbjct: 467 GGYGRKYEFDKCFDILKEMEDNG------TMPNVVSYGTLINCLCKGSKLLEA----QIV 516
Query: 300 KKAVDDLGVEVFEPLIRTY 318
K+ ++D GV P +R Y
Sbjct: 517 KRDMEDRGV---SPKVRIY 532
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 120/321 (37%), Gaps = 61/321 (19%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
K L +MK + S +N L+ K + EM A ++P TYN +
Sbjct: 197 KGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLI 256
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ + +V E MK D + TF+ L +AG+ E AE LKE+++
Sbjct: 257 DGYCKAGNPEKSFKVRERMKAD-HIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGF 315
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
D A+ F I G + N AE
Sbjct: 316 VPD--AFTFSILFDGYSSN------------------------------------EKAEA 337
Query: 184 CFKEWESGCAT---YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
+E+ + + ++++ A KEG++E AEE+ R +G PN + D
Sbjct: 338 ALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMID 397
Query: 241 YYLRNGDM---KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 297
Y R GD+ ++ ++ +EK G K P +R F + +++ AE
Sbjct: 398 GYCRKGDLVGARMKIEAMEK-------QGMK--PDHLAYNCLIRRFCELGEMENAE---- 444
Query: 298 ILKKAVDDLGVEVFEPLIRTY 318
K V+ + ++ P + TY
Sbjct: 445 ---KEVNKMKLKGVSPSVETY 462
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 1/260 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EKAE +L + L + + +N+++ Y + G I+ M+ + PD YN
Sbjct: 371 EKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCL 430
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+R + ++ AE+ + +MK G V+ T++ L Y F+K LKE+E+
Sbjct: 431 IRRFCELGEMENAEKEVNKMKLKG-VSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
++ +Y LI + L E + R + + Y +I + + A
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAF 549
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
+ KE ++ N +I + G+L AE+L R+G P+ T+ Y
Sbjct: 550 RFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGY 609
Query: 243 LRNGDMKLAVDCLEKAIDTG 262
G+++ + E+ +G
Sbjct: 610 GFAGNVQRCIALYEEMKRSG 629
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 5/214 (2%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+AE LL ++ L +NSL++ Y G+ ++ A+ +EMK S I P TY++ +
Sbjct: 582 EAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI 641
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+L I ER+ EM + D ++ + Y G EKA K++ ++
Sbjct: 642 -SLCTKEGIELTERLFGEMS----LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSI 696
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
D + Y LI + G L EV + + +Y +++ +KD A
Sbjct: 697 GLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYV 756
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE 217
++E + D+ + N ++ +E R + AE
Sbjct: 757 WYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAE 790
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 44/234 (18%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
++ +L+K ELNL + +N+L+ + TG + ++ E+ + PD +TYN +
Sbjct: 552 SKEMLKKGIELNL----VTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLIS 607
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
++ + EEMKR G + T+ L S+ + G+ E ER E+ +
Sbjct: 608 GYGFAGNVQRCIALYEEMKRSG-IKPTLKTYHLLISLCTKEGI-ELTERLFGEM---SLK 662
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184
DL Y ++ Y G++ + + + + MI+ + L
Sbjct: 663 PDLLVYNGVLHCYAVHGDMEKAFNLQK---------------QMIEKSIGL--------- 698
Query: 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 238
D N +I K G+L L + R +P A T+ I
Sbjct: 699 -----------DKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNII 741
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EKA L ++M E ++G +NSL+ K G ++ ++I EM A + P++ TYN+
Sbjct: 682 EKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNII 741
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR- 121
++ V D A EM+ G + D + L S E ++AE + E+ R
Sbjct: 742 VKGHCEVKDYMSAYVWYREMQEKGFL-LDVCIGNELVSGLKEEWRSKEAEIVISEMNGRM 800
Query: 122 ----NAHRDLSAYQFL 133
DLSA + L
Sbjct: 801 LGDVTVDEDLSATEKL 816
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Query: 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 224
Y IQ V L D+ + F + + + NV+I K R+ +AE+L +
Sbjct: 182 YGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEML 241
Query: 225 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 284
R P+ T+ D Y + G+ + + E R PS T T ++
Sbjct: 242 ARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE------RMKADHIEPSLITFNTLLKGLF 295
Query: 285 QEKDVDGAEGFLEILKKAVDDLG 307
+ V+ AE L K + DLG
Sbjct: 296 KAGMVEDAENVL----KEMKDLG 314
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 119/264 (45%), Gaps = 19/264 (7%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EK L +++E + + +N+L++ Y+ G E+ ++ M P YTYN
Sbjct: 252 EKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTV 311
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ L A+ V EM R G ++ D TT+ +L + G + E+ ++ +R+
Sbjct: 312 INGLCKHGKYERAKEVFAEMLRSG-LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL---------NMIQVLV 173
DL + +++L+ ++GNL + + S++ A N+ Y MI V +
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430
Query: 174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK 233
NL++ + + GCA D+ N ++ K L A++L R P++
Sbjct: 431 NLRN--------EMLQQGCAM-DVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSY 481
Query: 234 TWEIFSDYYLRNGDMKLAVDCLEK 257
T I D + + G+++ A++ +K
Sbjct: 482 TLTILIDGHCKLGNLQNAMELFQK 505
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 3/237 (1%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M +A+ L +M E L S L+ + K G+ + + Q+MK I D TYN
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYN 519
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ V DI A+ + +M + ++S L + G +A R E+ +
Sbjct: 520 TLLDGFGKVGDIDTAKEIWADMVSK-EILPTPISYSILVNALCSKGHLAEAFRVWDEMIS 578
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
+N + +I Y ++GN S+ + ISY +I V +++
Sbjct: 579 KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSK 638
Query: 181 AEKCFK--EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
A K E E G D+ N ++ + ++ +++ AE + + RG +P+ T+
Sbjct: 639 AFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/238 (18%), Positives = 95/238 (39%), Gaps = 1/238 (0%)
Query: 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 84
N+L+ + G E + QE+ S + + YT N+ + AL + + +++
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE 263
Query: 85 DGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 144
G V D T++ L S Y GL E+A + + + + Y +I + G
Sbjct: 264 KG-VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYE 322
Query: 145 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 204
++ + + + + +Y +++ D+ EK F + S D+ + M+
Sbjct: 323 RAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMM 382
Query: 205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
+ + G L+ A + G P+ + I Y R G + +A++ + + G
Sbjct: 383 SLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG 440
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 50/253 (19%), Positives = 96/253 (37%), Gaps = 25/253 (9%)
Query: 70 NDISGAERVIEEMK-RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR------- 121
ND++ +R ++++ + S + I V +G A+ L + R
Sbjct: 90 NDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLE 149
Query: 122 ----------NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN-MIQ 170
N + S + LI Y Q L E + + LR + T +I N +I
Sbjct: 150 IVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLR-SKGFTVSIDACNALIG 208
Query: 171 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 230
LV + + A ++E ++ N+M+ A K+G++E + + +G P
Sbjct: 209 SLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYP 268
Query: 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD 290
+ T+ Y G M+ A + + G+G + I +H + E+
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAM--PGKGFSPGVYTYNTVINGLCKHGKYER--- 323
Query: 291 GAEGFLEILKKAV 303
E F E+L+ +
Sbjct: 324 AKEVFAEMLRSGL 336
>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910,
chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2
SV=1
Length = 664
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 110/241 (45%), Gaps = 1/241 (0%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KA L+ ++ + S+ + +++ + A G E+ IQ+MK P+ Y Y+ +
Sbjct: 220 KAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLL 279
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ + D A+ ++ EMK G V + + L +Y++ GLF+++ L ELE+
Sbjct: 280 NSYSWKGDYKKADELMTEMKSIGLV-PNKVMMTTLLKVYIKGGLFDRSRELLSELESAGY 338
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
+ Y L+ + G L E I+ ++ + + MI L K A++
Sbjct: 339 AENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKE 398
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243
++ E+ D+ + N M+ AY + G +E+ + ++ + P+ T+ I Y++
Sbjct: 399 LSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIKYFI 458
Query: 244 R 244
+
Sbjct: 459 K 459
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 91/209 (43%), Gaps = 10/209 (4%)
Query: 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV-NDISGAERVIEEMK 83
NS+++ K G + + +MK + PD TYN + V N A +I E+
Sbjct: 170 NSILSCLVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELP 229
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
+G + D + + +I G E+AE +++++ ++ Y L+ Y G+
Sbjct: 230 HNG-IQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYHYSSLLNSYSWKGDY 288
Query: 144 ---SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES-GCATYDIRV 199
E+ +S+ L PN ++ L + + L D + + E ES G A ++
Sbjct: 289 KKADELMTEMKSIGLV-PNKVMMTTLLKVYIKGGLFD--RSRELLSELESAGYAENEMPY 345
Query: 200 TNVMIGAYAKEGRLENAEELKERARRRGA 228
+M G +K G+LE A + + + +G
Sbjct: 346 CMLMDG-LSKAGKLEEARSIFDDMKGKGV 373
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+KA+ L+ +MK + L + + +L+ +Y K G ++ ++ E++++ + Y +
Sbjct: 289 KKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCML 348
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
M L+ + A + ++MK G V +D S + S + F++A+ ++ E
Sbjct: 349 MDGLSKAGKLEEARSIFDDMKGKG-VRSDGYANSIMISALCRSKRFKEAKELSRDSETTY 407
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSL 153
DL ++ Y + G + V R+ + +
Sbjct: 408 EKCDLVMLNTMLCAYCRAGEMESVMRMMKKM 438
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 5/227 (2%)
Query: 43 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL--AS 100
I Q + S + Y N + L + ++ ++MKRDG + D T++ L
Sbjct: 153 IYQSIPDESTKINVYICNSILSCLVKNGKLDSCIKLFDQMKRDG-LKPDVVTYNTLLAGC 211
Query: 101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 160
I V+ G + KA + EL + D Y ++ + G E + +++ +
Sbjct: 212 IKVKNG-YPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSP 270
Query: 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 220
Y +++ D A++ E +S + + ++ Y K G + + EL
Sbjct: 271 NIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELL 330
Query: 221 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG-RGDG 266
G N + + D + G ++ A + G R DG
Sbjct: 331 SELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDG 377
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 154/353 (43%), Gaps = 15/353 (4%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
EKA LL +M E L + + +N+L+ Y K G E +++ M++ + P++ TYN
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNEL 434
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
++ N + A V+ +M + +V D T+++L +G F+ A R L + +R
Sbjct: 435 IKGYCKSN-VHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D Y +I ++ + E ++ SL N + Y +I + A
Sbjct: 493 LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
++ S + N +I +G+L+ A L+E+ + G P T I
Sbjct: 553 LMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612
Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302
L++GD A ++ + +G P + T TF++ + +E + AE + +++
Sbjct: 613 LKDGDFDHAYSRFQQMLSSGTK------PDAHTYTTFIQTYCREGRLLDAEDMMAKMREN 666
Query: 303 VDDLGVEVFEPLIRTYAAAGRTSPV--MLRRLKMEKVEVSEAS-----KKLLE 348
+ + LI+ Y G+T+ +L+R++ E S+ + K LLE
Sbjct: 667 GVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 123/287 (42%), Gaps = 9/287 (3%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
KA +L KM E + + +NSL+ ++G+ + ++ M ++PD +TY
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ +L + A + + +++ G V + ++ L Y +AG ++A L+++ ++
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKG-VNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK 561
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIW-RSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
N + + LI G L E + + +++ T + + +I L+ D
Sbjct: 562 NCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI-LIHRLLKDGDFDH 620
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
A F++ S D I Y +EGRL +AE++ + R G P+ T+
Sbjct: 621 AYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 287
Y G A D L++ DTG PS T + ++H + K
Sbjct: 681 GYGDLGQTNFAFDVLKRMRDTG------CEPSQHTFLSLIKHLLEMK 721
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 5/235 (2%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+N+L+ A+ G +++ + EM + P+ YTYN + + ++ A + + ++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
G + D+ T+++L Y + + A + E+ + R+ AY LI +
Sbjct: 246 EAG-LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304
Query: 144 SEVYRIWRSLR--LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 201
E ++ ++ FP +Y +I+ L + A KE E +I
Sbjct: 305 DEAMDLFVKMKDDECFPTVR--TYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362
Query: 202 VMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 256
V+I + + + E A EL + +G PN T+ + Y + G ++ AVD +E
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVE 417
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 114/264 (43%), Gaps = 9/264 (3%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+ A + L +M + L S P+NSL+ + K G + EM + P TY
Sbjct: 419 DTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSL 478
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
M + I+ A R+ EM G +A TF+ L S AGL A + E+ N
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKG-IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWN 537
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLPG 180
+ Y +I Y + G++S+ + + + + P+T SY +I L L
Sbjct: 538 VKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT--YSYRPLIHGLC-LTGQAS 594
Query: 181 AEKCFKE--WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 238
K F + + C +I T ++ G + +EG+LE A + + +RG D + + +
Sbjct: 595 EAKVFVDGLHKGNCELNEICYTGLLHG-FCREGKLEEALSVCQEMVQRGVDLDLVCYGVL 653
Query: 239 SDYYLRNGDMKLAVDCLEKAIDTG 262
D L++ D KL L++ D G
Sbjct: 654 IDGSLKHKDRKLFFGLLKEMHDRG 677
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 20/310 (6%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+ A L +M E N+ + + +N ++ Y + G K ++EM I+PD+Y+Y
Sbjct: 522 LIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYR 581
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ L S A+ ++ + + G + ++ L + G E+A +E+
Sbjct: 582 PLIHGLCLTGQASEAKVFVDGLHK-GNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQ 640
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
R DL Y LI + + + + + + ++ Y +MI D
Sbjct: 641 RGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKE 700
Query: 181 AEKCFKEWE----SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE 236
A F W+ GC ++ T V I K G + AE L + + + PN T+
Sbjct: 701 A---FGIWDLMINEGCVPNEVTYTAV-INGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYG 756
Query: 237 IFSDYYLRNG-DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGF 295
F D + DM+ AV+ L AI G + ++ T +R F ++ ++ A
Sbjct: 757 CFLDILTKGEVDMQKAVE-LHNAILKG------LLANTATYNMLIRGFCRQGRIEEAS-- 807
Query: 296 LEILKKAVDD 305
E++ + + D
Sbjct: 808 -ELITRMIGD 816
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 122/290 (42%), Gaps = 15/290 (5%)
Query: 43 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102
+ +M + I PD Y Y +R+L + D+S A+ +I M+ G + ++ L
Sbjct: 214 LFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATG-CDVNIVPYNVLIDGL 272
Query: 103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS---EVYRIWRSLRLAFPN 159
+ +A K+L ++ D+ Y L+ + E+ LR + P+
Sbjct: 273 CKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFS-PS 331
Query: 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 219
A +S ++++ L + A K + ++ V N +I + K + AE L
Sbjct: 332 EAAVS--SLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELL 389
Query: 220 KERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279
+R + G PN T+ I D + R G + A+ L + +DTG S +
Sbjct: 390 FDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTG------LKLSVYPYNSL 443
Query: 280 MRHFEQEKDVDGAEGFL-EILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328
+ + D+ AEGF+ E++ K ++ V + L+ Y + G+ + +
Sbjct: 444 INGHCKFGDISAAEGFMAEMINKKLEPT-VVTYTSLMGGYCSKGKINKAL 492
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 1/228 (0%)
Query: 7 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL 66
LL++M + L + + S++ +KTG ++ I M +P+ TY + L
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727
Query: 67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 126
++ AE + +M+ V + T+ I + + + L + +
Sbjct: 728 CKAGFVNEAEVLCSKMQPVSSVP-NQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLAN 786
Query: 127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 186
+ Y LI + + G + E + + + I+Y MI L D+ A + +
Sbjct: 787 TATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWN 846
Query: 187 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT 234
D N +I G + A EL+ R+G PN KT
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 70/396 (17%), Positives = 134/396 (33%), Gaps = 61/396 (15%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+A+ ++ M+ + +P+N L+ K + I +++ + PD TY +
Sbjct: 245 RAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLV 304
Query: 64 RALAAVNDI-------------------SGAERVIEEMKRDGR---------------VA 89
L V + + ++E +++ G+ V+
Sbjct: 305 YGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVS 364
Query: 90 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRI 149
+ ++ L + F +AE + + Y LI ++ + G L
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 424
Query: 150 WRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF-----KEWESGCATYDIRVTNVMI 204
+ + Y ++I D+ AE K+ E TY ++
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTY-----TSLM 479
Query: 205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 264
G Y +G++ A L +G P+ T+ R G ++ AV +
Sbjct: 480 GGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEM------ 533
Query: 265 DGGKW--VPSSETIRTFMRHFEQEKDVDGAEGFLEIL--KKAVDDLGVEVFEPLIRTYAA 320
+W P+ T + + +E D+ A FL+ + K V D + PLI
Sbjct: 534 --AEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD--TYSYRPLIHGLCL 589
Query: 321 AGRTS--PVMLRRLKMEKVEVSEAS-KKLLEAICVE 353
G+ S V + L E++E LL C E
Sbjct: 590 TGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCRE 625
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 5/226 (2%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+N ++ Y + EK + + M + + PD TYN ++ LA+ + +E+M+
Sbjct: 508 YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMR 567
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
G V+ D + + S +V+ G AE KE+ N D+ Y LI + TGN+
Sbjct: 568 ETGYVS-DCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNV 626
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY---DIRVT 200
+ +++ A ++ Y ++I++ + L AE +++ C D+ +
Sbjct: 627 QQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTS 686
Query: 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246
N MI Y++ + AE + + ++RG + N T+ + Y +NG
Sbjct: 687 NCMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLCMYKKNG 731
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 113/261 (43%), Gaps = 7/261 (2%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M K LEKM+E +P+ ++++ + K G + +EM +I PD Y
Sbjct: 555 MPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYG 614
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE---RALKE 117
V + A A ++ A +E MK G + + +++L +Y + G ++AE R L +
Sbjct: 615 VLINAFADTGNVQQAMSYVEAMKEAG-IPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQ 673
Query: 118 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-ISYLNMIQVLVNLK 176
N+ + D+ +I LY + + + I+ S++ AN ++ M+ +
Sbjct: 674 SCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQR--GEANEFTFAMMLCMYKKNG 731
Query: 177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE 236
A + K+ D N ++G +A +GR + A E + G P+ T++
Sbjct: 732 RFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFK 791
Query: 237 IFSDYYLRNGDMKLAVDCLEK 257
++ G K AV +E+
Sbjct: 792 SLGTILMKLGMSKKAVRKIEE 812
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 122/296 (41%), Gaps = 49/296 (16%)
Query: 7 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL 66
+L++ MK L+ + +N L++L+ K E+ A +EMK + PD +Y + A
Sbjct: 354 SLMKTMK-LHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAF 412
Query: 67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK---------------- 110
+ + + AE +I EM D V D T S L +YVEA + EK
Sbjct: 413 SIRHMVEEAEGLIAEMD-DDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSS 471
Query: 111 ------------------AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 152
AER + N R + Y +I YG + + + ++ S
Sbjct: 472 EGYSANIDAYGERGYLSEAERVFICCQEVN-KRTVIEYNVMIKAYGISKSCEKACELFES 530
Query: 153 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE------WESGCATYDIRVTNVMIGA 206
+ +Y ++Q+L + D+P +C+ E + S C Y +I +
Sbjct: 531 MMSYGVTPDKCTYNTLVQILAS-ADMPHKGRCYLEKMRETGYVSDCIPY-----CAVISS 584
Query: 207 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
+ K G+L AEE+ + +P+ + + + + G+++ A+ +E + G
Sbjct: 585 FVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAG 640
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 111/268 (41%), Gaps = 13/268 (4%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
EKA L E M + +N+L+ + A P K +++M+ + + D Y
Sbjct: 521 CEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCA 580
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ + + ++ AE V +EM + + D + L + + + G ++A ++ ++
Sbjct: 581 VISSFVKLGQLNMAEEVYKEM-VEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEA 639
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL-----RLAFPN--TANISYLNMIQVLVN 174
+ Y LI LY + G L E I+R L + +P+ T+N MI +
Sbjct: 640 GIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNC----MINLYSE 695
Query: 175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT 234
+ AE F + + +M+ Y K GR E A ++ ++ R + +
Sbjct: 696 RSMVRKAEAIFDSMKQRGEANEFTFA-MMLCMYKKNGRFEEATQIAKQMREMKILTDPLS 754
Query: 235 WEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
+ + +G K AV+ ++ + +G
Sbjct: 755 YNSVLGLFALDGRFKEAVETFKEMVSSG 782
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 57/354 (16%)
Query: 16 NLGFSSMPFNSLMTLYAKTGHPEK-------------IPAII-------------QEMKA 49
++ SS +N+++ Y K+G ++ +P + Q +
Sbjct: 293 HVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEV 352
Query: 50 SSIM--------PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101
+S+M PD+ TYN+ + NDI A +EMK DG + D ++ L
Sbjct: 353 TSLMKTMKLHCAPDTRTYNILISLHTKNNDIERAGAYFKEMKDDG-LKPDPVSYRTLLYA 411
Query: 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161
+ + E+AE + E+++ N D L +Y + L + + ++ +A N +
Sbjct: 412 FSIRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVA-GNMS 470
Query: 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT---NVMIGAYAKEGRLENAEE 218
+ Y I L AE+ F C + R NVMI AY E A E
Sbjct: 471 SEGYSANIDAYGERGYLSEAERVF----ICCQEVNKRTVIEYNVMIKAYGISKSCEKACE 526
Query: 219 LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC-LEKAIDTGRGDGGKWVPSSETIR 277
L E G P+ T+ L + DM C LEK +TG +P I
Sbjct: 527 LFESMMSYGVTPDKCTYNTLVQ-ILASADMPHKGRCYLEKMRETGYVS--DCIPYCAVIS 583
Query: 278 TFMRHFEQEKDVDGAEGFLEILKKAVD---DLGVEVFEPLIRTYAAAGRTSPVM 328
+F++ + ++ AE E+ K+ V+ + V V+ LI +A G M
Sbjct: 584 SFVKLGQ----LNMAE---EVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAM 630
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 8/202 (3%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI---- 79
+ +L+ +Y+K G + +M + PD T + ++ + AE
Sbjct: 225 YGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWS 284
Query: 80 -EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 138
+E K D V T++ + Y ++G ++A K + + +I +YG
Sbjct: 285 CDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYG 344
Query: 139 QTGNLSEVYRIWRSLRL-AFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI 197
G L EV + ++++L P+T +Y +I + D+ A FKE + D
Sbjct: 345 NNGQLGEVTSLMKTMKLHCAPDTR--TYNILISLHTKNNDIERAGAYFKEMKDDGLKPDP 402
Query: 198 RVTNVMIGAYAKEGRLENAEEL 219
++ A++ +E AE L
Sbjct: 403 VSYRTLLYAFSIRHMVEEAEGL 424
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
E+A + ++M+E+ + + +NS++ L+A G ++ +EM +S I PD T+
Sbjct: 734 EEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSL 793
Query: 63 MRALAAVNDISGAERVIEEMKR 84
L + A R IEE+++
Sbjct: 794 GTILMKLGMSKKAVRKIEEIRK 815
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT------NVMIGAYAKEGRLENAEELKE 221
++Q+ ++ AE+ FK+W D V N MI Y K G+++ A E +
Sbjct: 263 VLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFK 322
Query: 222 RARRRGADPNAKTWEIFSDYYLRNGDM 248
R G P T+ Y NG +
Sbjct: 323 RMLEEGIVPTTVTFNTMIHIYGNNGQL 349
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 101/235 (42%), Gaps = 1/235 (0%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+ ++A + E+MK + + +N+L+ +Y K+ P++ ++ EM + P TYN
Sbjct: 294 LHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYN 353
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ A A + A + +M G D T++ L S + AG E A +E+ N
Sbjct: 354 SLISAYARDGMLDEAMELKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
++ + I +YG G +E+ +I+ + + + +++ ++ V
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
FKE + + N +I AY++ G E A + R G P+ T+
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTY 527
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 1/259 (0%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
K +L+EKMK + + +N+L+T + ++ + +EMKA+ D TYN +
Sbjct: 262 KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALL 321
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ A +V+ EM +G + T+++L S Y G+ ++A ++ +
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNG-FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT 380
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
D+ Y L++ + + G + I+ +R A ++ I++ N K
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243
F E + DI N ++ + + G + + +R G P +T+ Y
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 244 RNGDMKLAVDCLEKAIDTG 262
R G + A+ + +D G
Sbjct: 501 RCGSFEQAMTVYRRMLDAG 519
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/335 (20%), Positives = 137/335 (40%), Gaps = 42/335 (12%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M + + ++MK FN+L++ Y++ G E+ + + M + + PD TYN
Sbjct: 469 MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYN 528
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY---------------VEA 105
+ ALA +E+V+ EM+ DGR + T+ +L Y V +
Sbjct: 529 TVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587
Query: 106 GLFE--------------------KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 145
G+ E +AERA EL+ R D++ ++++YG+ +++
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAK 647
Query: 146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205
+ ++ + +Y +++ + D +E+ +E + DI N +I
Sbjct: 648 ANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIY 707
Query: 206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 265
AY + R+ +A + R G P+ T+ F Y + + A+ + I G
Sbjct: 708 AYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHG--- 764
Query: 266 GGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
P+ T + + + + D A+ F+E L+
Sbjct: 765 ---CRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/322 (20%), Positives = 127/322 (39%), Gaps = 14/322 (4%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A + ++E + SL++ +A +G + + ++M+ P TYNV +
Sbjct: 192 AANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILN 251
Query: 65 ALAAV----NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ N I+ ++E+MK DG +A D T++ L + L ++A + +E++
Sbjct: 252 VFGKMGTPWNKITS---LVEKMKSDG-IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA 307
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
D Y L+ +YG++ E ++ + L + + ++Y ++I L
Sbjct: 308 AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDE 367
Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
A + + D+ ++ + + G++E+A + E R G PN T+ F
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIK 427
Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
Y G + ++ G P T T + F Q G + +K
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCG------LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMK 481
Query: 301 KAVDDLGVEVFEPLIRTYAAAG 322
+A E F LI Y+ G
Sbjct: 482 RAGFVPERETFNTLISAYSRCG 503
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M KA +L+ MKE S +NSLM +++++ K I++E+ A I PD +YN
Sbjct: 644 MVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN 703
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ A + A R+ EM+ G + D T++ Y +FE+A ++ +
Sbjct: 704 TVIYAYCRNTRMRDASRIFSEMRNSG-IVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK 762
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173
+ + Y ++ Y + E LR P+ L +++ +V
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGEDLRLLERIV 815
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 119/293 (40%), Gaps = 15/293 (5%)
Query: 27 LMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 86
++++ K G + ++ D Y+Y + A A A V ++M+ DG
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 87 RVAADWTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 145
T++ + +++ + G + K ++++++ D Y LIT + E
Sbjct: 239 -CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205
+++ ++ A + ++Y ++ V A K E + I N +I
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 265
AYA++G L+ A ELK + +G P+ T+ + R G ++ A+ E+ R
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEM----RNA 413
Query: 266 GGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318
G K P+ T F++ + G G + K D++ V P I T+
Sbjct: 414 GCK--PNICTFNAFIKMY-------GNRGKFTEMMKIFDEINVCGLSPDIVTW 457
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/339 (20%), Positives = 125/339 (36%), Gaps = 43/339 (12%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M ++A L +M E + +L++ + + G E +I +EM+ + P+ T+N
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423
Query: 61 VWMR-------------------------------ALAAVNDISGAER----VIEEMKRD 85
+++ L AV +G + V +EMKR
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483
Query: 86 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 145
G V + TF+ L S Y G FE+A + + + DLS Y ++ + G +
Sbjct: 484 GFV-PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542
Query: 146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205
++ + ++Y +++ N K++ +E SG + ++
Sbjct: 543 SEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVL 602
Query: 206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 265
+K L AE + RG P+ T Y R + A L+ + G
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERG--- 659
Query: 266 GGKWVPSSETIRTFMRHFEQEKDVDGAEGFL-EILKKAV 303
+ PS T + M + D +E L EIL K +
Sbjct: 660 ---FTPSMATYNSLMYMHSRSADFGKSEEILREILAKGI 695
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 13/250 (5%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+AE L ++M + + ++ + SL+ + K +K ++ M + P+ T+N+ +
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
N I + +M G V AD T++ L + E G E A+ +E+ +R
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRG-VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
D+ +Y+ L+ G + I+ + + +I N+I + + A K
Sbjct: 454 RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKS-KMELDIGIYNII-----IHGMCNASK 507
Query: 184 CFKEWESGCATY------DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237
W+ C+ D++ N+MIG K+G L A+ L + G PN T+ I
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNI 567
Query: 238 FSDYYLRNGD 247
+L GD
Sbjct: 568 LIRAHLGEGD 577
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 108/250 (43%), Gaps = 7/250 (2%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A L+++M E + + + ++ + K+G ++++M+ I D+ Y++ +
Sbjct: 196 AVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIID 255
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
L + A + EM+ G AD ++ L + AG ++ + L+++ R
Sbjct: 256 GLCKDGSLDNAFNLFNEMEIKG-FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKIT 314
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D+ A+ LI + + G L E + + + R P+T ++Y ++I L A
Sbjct: 315 PDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT--VTYTSLIDGFCKENQLDKAN 372
Query: 183 KCFKEWES-GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
S GC +IR N++I Y K +++ EL + RG + T+
Sbjct: 373 HMLDLMVSKGCGP-NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 242 YLRNGDMKLA 251
+ G +++A
Sbjct: 432 FCELGKLEVA 441
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/328 (19%), Positives = 127/328 (38%), Gaps = 24/328 (7%)
Query: 11 KMKELNLGFSSM-------------PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY 57
+ ++L+L FS+M F++L+ G + ++ M P
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLI 178
Query: 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 117
T N + L +S A +I+ M G + T+ + + ++G A L++
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETG-FQPNEVTYGPVLKVMCKSGQTALAMELLRK 237
Query: 118 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177
+E R D Y +I + G+L + ++ + + I Y +I+
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297
Query: 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237
K ++ T D+ + +I + KEG+L AEEL + +RG P+ T+
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357
Query: 238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV-DGAEGFL 296
D + + + A L+ + G G P+ T + + + + DG E F
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCG------PNIRTFNILINGYCKANLIDDGLELFR 411
Query: 297 EI-LKKAVDDLGVEVFEPLIRTYAAAGR 323
++ L+ V D + LI+ + G+
Sbjct: 412 KMSLRGVVAD--TVTYNTLIQGFCELGK 437
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 107/260 (41%), Gaps = 9/260 (3%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T A LL KM+E + ++ ++ ++ K G + + EM+ D Y
Sbjct: 228 TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTT 287
Query: 62 WMRALAAVNDISGAERVIEEM-KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+R +++ +M KR ++ D FS L +V+ G +AE KE+
Sbjct: 288 LIRGFCYAGRWDDGAKLLRDMIKR--KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ 345
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI---QVLVNLKD 177
R D Y LI + + L + + L ++ NI N++ NL D
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHML-DLMVSKGCGPNIRTFNILINGYCKANLID 404
Query: 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237
G E F++ D N +I + + G+LE A+EL + R P+ +++I
Sbjct: 405 -DGLE-LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKI 462
Query: 238 FSDYYLRNGDMKLAVDCLEK 257
D NG+ + A++ EK
Sbjct: 463 LLDGLCDNGEPEKALEIFEK 482
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 5/245 (2%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
+A L+++M E+ + + N+L+ G +I M + P+ TY
Sbjct: 158 VSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP 217
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
++ + + A ++ +M+ + ++ D +S + + G + A E+E +
Sbjct: 218 VLKVMCKSGQTALAMELLRKME-ERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 276
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLP 179
D+ Y LI + G + ++ R + R P+ S L I V L
Sbjct: 277 GFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL--IDCFVKEGKLR 334
Query: 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239
AE+ KE + D +I + KE +L+ A + + +G PN +T+ I
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394
Query: 240 DYYLR 244
+ Y +
Sbjct: 395 NGYCK 399
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/215 (18%), Positives = 90/215 (41%), Gaps = 1/215 (0%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+ +L+ + G + ++++M I PD ++ + + AE + +EM
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMI 344
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
+ G ++ D T+++L + + +KA L + ++ ++ + LI Y + +
Sbjct: 345 QRG-ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLI 403
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203
+ ++R + L ++Y +IQ L L A++ F+E S DI ++
Sbjct: 404 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKIL 463
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 238
+ G E A E+ E+ + + + + I
Sbjct: 464 LDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNII 498
Score = 38.9 bits (89), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 61/335 (18%), Positives = 117/335 (34%), Gaps = 42/335 (12%)
Query: 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81
+ F+ L ++ A+T + + + ++M+ I + YT ++ + +S A + +
Sbjct: 73 IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGK 132
Query: 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 141
+ + G D TFS L + G +A + + L L+ G
Sbjct: 133 IIKLG-YEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNG 191
Query: 142 NLSE-VYRIWRSLRLAF-PNTAN---------------------------------ISYL 166
+S+ V I R + F PN + Y
Sbjct: 192 KVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYS 251
Query: 167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226
+I L L A F E E DI + +I + GR ++ +L +R
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKR 311
Query: 227 GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE 286
P+ + D +++ G ++ A + ++ I G P + T + + F +E
Sbjct: 312 KITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG------ISPDTVTYTSLIDGFCKE 365
Query: 287 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321
+D A L+++ + F LI Y A
Sbjct: 366 NQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKA 400
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 19 FSSMP----------FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA 68
F S+P +N ++ K G + + ++M+ P+ TYN+ +RA
Sbjct: 515 FCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLG 574
Query: 69 VNDISGAERVIEEMKRDG 86
D + + ++IEE+KR G
Sbjct: 575 EGDATKSAKLIEEIKRCG 592
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 7/276 (2%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A+ + +++ + +L + + FN+L+ Y K G+ ++ + +M+ S PD +TY+ +
Sbjct: 259 AQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALIN 318
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
AL N + GA + +EM + G + D F+ L + G + + + +++ ++
Sbjct: 319 ALCKENKMDGAHGLFDEMCKRGLIPND-VIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQ 377
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184
D+ Y L+ + + G+L I + I+Y +I D+ A +
Sbjct: 378 PDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEI 437
Query: 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244
KE + D + ++ KEGR+ +AE R G P+ T+ + D + +
Sbjct: 438 RKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCK 497
Query: 245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 280
GD + L++ + DG VPS T +
Sbjct: 498 KGDAQTGFKLLKEM----QSDG--HVPSVVTYNVLL 527
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 102/245 (41%), Gaps = 1/245 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+ A L ++M + L + + F +L+ +++ G + + Q+M + + PD YN
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ D+ A +++ M R G + D T++ L + G E A KE++
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRG-LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNG 445
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D + L+ + G + + R R + A +++Y M+ D
Sbjct: 446 IELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGF 505
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
K KE +S + NV++ K G+++NA+ L + G P+ T+ + +
Sbjct: 506 KLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGH 565
Query: 243 LRNGD 247
R+ +
Sbjct: 566 HRHAN 570
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 1/146 (0%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
E A + ++M + + + F++L+ K G ++EM + I PD TY +
Sbjct: 431 VETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTM 490
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
M A D ++++EM+ DG V + T++ L + + G + A+ L + N
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHVPS-VVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVY 147
D Y L+ + + N S+ Y
Sbjct: 550 GVVPDDITYNTLLEGHHRHANSSKRY 575
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Query: 118 LENRNAHRDLSAYQF--LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175
+E +A L+ Y F L+ + + GN+S+ +++ + +S+ +I +
Sbjct: 229 MEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKV 288
Query: 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
+L + + E D+ + +I A KE +++ A L + +RG PN +
Sbjct: 289 GNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIF 348
Query: 236 EIFSDYYLRNGDMKLAVDCLEKAIDTG 262
+ RNG++ L + +K + G
Sbjct: 349 TTLIHGHSRNGEIDLMKESYQKMLSKG 375
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/332 (19%), Positives = 133/332 (40%), Gaps = 43/332 (12%)
Query: 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
L++ MK N+ S F L+ Y + G + M+ +PD +++ + L+
Sbjct: 173 LIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLS 232
Query: 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 127
S A+ + +K R D ++NL + AG +AE+ KE++ ++
Sbjct: 233 RKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNV 290
Query: 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187
Y +I + G +S + ++ +
Sbjct: 291 YTYSIVIDALCRCGQISRAHDVFADM---------------------------------- 316
Query: 188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 247
+SGCA I N+M + K GR E ++ + ++ G +P+ T+ + + R+ +
Sbjct: 317 LDSGCAPNAITFNNLM-RVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 307
++ AV L I K ++ T T R+ E+++DV+GA + +A +
Sbjct: 376 LENAVKVLNTMIK------KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPN 429
Query: 308 VEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEV 339
+ L+R + + T V+ + +M+ EV
Sbjct: 430 TVTYNILMRMFVGSKSTDMVLKMKKEMDDKEV 461
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 13/229 (5%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+ +L+ + + G + + +EMK + I P+ YTY++ + AL IS A V +M
Sbjct: 258 YTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADML 317
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
G A + TF+NL ++V+AG EK + +++ D Y FLI + + NL
Sbjct: 318 DSG-CAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENL 376
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMI-QVLVNLKDLPGAEKCF-KEWESGC----ATYDI 197
++ ++ + N S N I + + +D+ GA + + K E+ C TY+I
Sbjct: 377 ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNI 435
Query: 198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246
+ + +G+ + + L+ +E+ ++ +PN T+ + + G
Sbjct: 436 -LMRMFVGSKSTDMVLKMKKEMDDKE----VEPNVNTYRLLVTMFCGMG 479
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 100/227 (44%), Gaps = 6/227 (2%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+A + M + +++ FN+LM ++ K G EK+ + +MK PD+ TYN +
Sbjct: 308 RAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLI 367
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
A ++ A +V+ M + + + +TF+ + + A R ++
Sbjct: 368 EAHCRDENLENAVKVLNTMIK-KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKC 426
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLPGA 181
+ Y L+ ++ + + V ++ + + + PN +Y ++ + + A
Sbjct: 427 EPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVN--TYRLLVTMFCGMGHWNNA 484
Query: 182 EKCFKEW-ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227
K FKE E C T + + +++ + G+L+ EEL E+ ++G
Sbjct: 485 YKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKG 531
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/260 (17%), Positives = 104/260 (40%), Gaps = 2/260 (0%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+AE + ++MK + + ++ ++ + G + + +M S P++ T+N M
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
R +V +MK+ G D T++ L + E A + L + +
Sbjct: 333 RVHVKAGRTEKVLQVYNQMKKLG-CEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKC 391
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
+ S + + + +++ +R++ + A ++Y ++++ V K K
Sbjct: 392 EVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLK 451
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL-KERARRRGADPNAKTWEIFSDYY 242
KE + ++ +++ + G NA +L KE + P+ +E+
Sbjct: 452 MKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQL 511
Query: 243 LRNGDMKLAVDCLEKAIDTG 262
R G +K + +EK I G
Sbjct: 512 RRAGQLKKHEELVEKMIQKG 531
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 45/226 (19%)
Query: 57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK 116
+ YN + V A +I+ MK V TF+ L YV AGL +A
Sbjct: 152 HPYNEMIDLSGKVRQFDLAWHLIDLMKSRN-VEISIETFTILIRRYVRAGLASEAVHCFN 210
Query: 117 ELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNL 175
+E+ D A+ +I+ + SE + SL+ F P+ I Y N+++
Sbjct: 211 RMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV--IVYTNLVR----- 263
Query: 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
+ + G + AE++ + + G +PN T+
Sbjct: 264 ------------------------------GWCRAGEISEAEKVFKEMKLAGIEPNVYTY 293
Query: 236 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 281
I D R G + A D +D+G P++ T MR
Sbjct: 294 SIVIDALCRCGQISRAHDVFADMLDSG------CAPNAITFNNLMR 333
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 133/298 (44%), Gaps = 16/298 (5%)
Query: 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81
+ +++++ Y + G +K+ +I+ MK + P+SY Y + L + ++ AE E
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 141
M R G + D ++ L + + G A + E+ +R+ D+ Y +I+ + Q G
Sbjct: 342 MIRQG-ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400
Query: 142 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW-ESGCATYDIRVT 200
++ E +++ + ++++ +I + A + ++GC+ ++
Sbjct: 401 DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP-NVVTY 459
Query: 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 260
+I KEG L++A EL + G PN T+ + ++G+++ AV +
Sbjct: 460 TTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV----- 514
Query: 261 TGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318
G + + T T M + + ++D A+ EILK+ + + +P I T+
Sbjct: 515 -GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ---EILKEMLG----KGLQPTIVTF 564
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 117/258 (45%), Gaps = 1/258 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+ A LL +M ++ L + +NS++ K+G+ E+ ++ E +A+ + D+ TY
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
M A ++ A+ +++EM G + TF+ L + + G+ E E+ L + +
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKG-LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
+ + + L+ Y NL I++ + +Y N+++ +++ A
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 651
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
F+E + + + +V+I + K + A E+ ++ RR G + + ++ FSD
Sbjct: 652 FLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTK 711
Query: 243 LRNGDMKLAVDCLEKAID 260
+ VD +++ I+
Sbjct: 712 YKGKRPDTIVDPIDEIIE 729
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 12/251 (4%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+ E EA E +++ L ++ + +L+ + K G EM + I PD TY
Sbjct: 332 LAEAEEAFSEMIRQGILP-DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ + D+ A ++ EM G + D TF+ L + Y +AG + A R +
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEMFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ 449
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSE----VYRIWR-SLRLAFPNTANISYLNMIQVLVNL 175
++ Y LI + G+L ++ +W+ L+ PN +Y +++ L
Sbjct: 450 AGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ---PNI--FTYNSIVNGLCKS 504
Query: 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
++ A K E+E+ D ++ AY K G ++ A+E+ + +G P T+
Sbjct: 505 GNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTF 564
Query: 236 EIFSDYYLRNG 246
+ + + +G
Sbjct: 565 NVLMNGFCLHG 575
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 1/264 (0%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A +M ++ + + ++++ + + G + + EM + PDS T+ +
Sbjct: 370 ASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELIN 429
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
+ A RV M + G + + T++ L + G + A L E+
Sbjct: 430 GYCKAGHMKDAFRVHNHMIQAG-CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184
++ Y ++ ++GN+ E ++ A N ++Y ++ ++ A++
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244
KE I NV++ + G LE+ E+L +G PNA T+ Y
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCI 608
Query: 245 NGDMKLAVDCLEKAIDTGRGDGGK 268
++K A + G G GK
Sbjct: 609 RNNLKAATAIYKDMCSRGVGPDGK 632
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/261 (18%), Positives = 101/261 (38%), Gaps = 1/261 (0%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T A + + E+ + ++ +N ++ + G ++ ++ M+ PD +Y+
Sbjct: 227 TATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYST 286
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ ++ ++IE MKR G + + + ++ + +AE A E+ +
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKG-LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
D Y LI + + G++ + + + ++Y +I + D+ A
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
K F E D +I Y K G +++A + + G PN T+ D
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465
Query: 242 YLRNGDMKLAVDCLEKAIDTG 262
+ GD+ A + L + G
Sbjct: 466 LCKEGDLDSANELLHEMWKIG 486
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
M E E LL M + ++ FNSL+ Y + + AI ++M + + PD TY
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYE 635
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
++ ++ A + +EMK G + +T+S L +++ F +A ++
Sbjct: 636 NLVKGHCKARNMKEAWFLFQEMKGKG-FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694
Query: 121 RNAHRDLSAYQFL 133
D + F
Sbjct: 695 EGLAADKEIFDFF 707
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 116/249 (46%), Gaps = 1/249 (0%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A ++L KM +L S + F SL+ + +++ M S P+ YN +
Sbjct: 125 ALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLID 184
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
L +++ A ++ EM++ G + AD T++ L + +G + A R L+++ R+ +
Sbjct: 185 GLCKNGELNIALELLNEMEKKG-LGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN 243
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184
D+ + LI ++ + GNL E +++ + + + N++Y ++I L L A+K
Sbjct: 244 PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKT 303
Query: 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244
F S ++ N +I + K ++ +L +R G + + T+ Y +
Sbjct: 304 FDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQ 363
Query: 245 NGDMKLAVD 253
G +++A+D
Sbjct: 364 VGKLRVALD 372
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 5/244 (2%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A +L M + ++ + F +L+ ++ K G+ ++ + +EM SS+ P++ TYN +
Sbjct: 230 AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIIN 289
Query: 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 124
L + A++ + M G + T++ L S + + + ++ + + + +
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKG-CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFN 348
Query: 125 RDLSAYQFLITLYGQTGNLSEVYRI--WRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D+ Y LI Y Q G L I W R P+ I++ ++ L ++ A
Sbjct: 349 ADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDI--ITHCILLHGLCVNGEIESAL 406
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
F + I N+MI K ++E A EL R G P+A+T+ I
Sbjct: 407 VKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGL 466
Query: 243 LRNG 246
+NG
Sbjct: 467 CKNG 470
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 106/286 (37%), Gaps = 38/286 (13%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
E A AL +M S + F L+T A E + Q+M+ I D Y++ +
Sbjct: 53 EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112
Query: 63 MRALAAVNDISGAERVIEEMKRDG-------------------RVAADWT---------- 93
+ + +S A V+ +M + G R+ ++
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172
Query: 94 -----TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 148
++ L + G A L E+E + D+ Y L+T +G S+ R
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232
Query: 149 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 208
+ R + N +++ +I V V +L A++ +KE + N +I
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292
Query: 209 KEGRLENAEELKERARRRGADPNAKTWEI----FSDYYLRNGDMKL 250
GRL +A++ + +G PN T+ F + + + MKL
Sbjct: 293 MHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 6/269 (2%)
Query: 2 TEKAEALLEKMKELNLGFSSMP----FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY 57
+++A LL M + + G S P + +++ + K G +K + EM I+PD
Sbjct: 174 SQEALELLHMMAD-DRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV 232
Query: 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 117
TYN + AL + A V+ M ++G V D T++++ Y +G ++A LK+
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291
Query: 118 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177
+ + D+ Y L+ + G E +I+ S+ +Y ++Q
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237
L D V +++I AYAK+G+++ A + + R++G +PNA T+
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGA 411
Query: 238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDG 266
++G ++ A+ E+ ID G G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPG 440
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 111/295 (37%), Gaps = 36/295 (12%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+KA +L M + + M +NS++ Y +G P++ +++M++ + PD TY++
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLL 307
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
M L A ++ + M + G + + TT+ L Y G + L +
Sbjct: 308 MDYLCKNGRCMEARKIFDSMTKRG-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF--PNT-------------------- 160
H D + LI Y + G + + ++ +R PN
Sbjct: 367 IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426
Query: 161 -------------ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 207
NI Y ++I L AE+ E + N +I ++
Sbjct: 427 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 486
Query: 208 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
KEGR+ +E+L E R G PN T+ + Y G M A+ L + G
Sbjct: 487 CKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 104/255 (40%), Gaps = 4/255 (1%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
++A + KM++ L +++ + +++ + K+G E ++M + P + YN
Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ L N AE +I EM G + + F+++ + + G ++E+ + +
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRG-ICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI 505
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
++ Y LI Y G + E ++ + ++Y +I + + A
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
FKE ES + DI N+++ + R A+EL R G T+ I
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625
Query: 242 YLRNGDMKLAVDCLE 256
+N KL D L+
Sbjct: 626 LCKN---KLTDDALQ 637
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 102/244 (41%), Gaps = 1/244 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
E+AE L+ +M + + +++ FNS++ + K G + + + M + P+ TYN
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ + A +++ M G + + T+S L + Y + E A KE+E+
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVG-LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D+ Y ++ QT + ++ + + +Y ++ L K A
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
+ F+ + R N+MI A K GR + A++L G PN T+ + ++
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696
Query: 243 LRNG 246
+ G
Sbjct: 697 IGQG 700
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/242 (18%), Positives = 97/242 (40%), Gaps = 9/242 (3%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
++A LL M + L +++ +++L+ Y K E + +EM++S + PD TYN+
Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
++ L + A+ + + G + +T++ + + L + A + + L +
Sbjct: 588 LQGLFQTRRTAAAKELYVRITESG-TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMD 646
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDL 178
+ + +I + G E + L +AF + + +Y M + ++ L
Sbjct: 647 LKLEARTFNIMIDALLKVGRNDEA----KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLL 702
Query: 179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 238
++ F E T D + N ++ + G + A + A T +F
Sbjct: 703 EELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLF 762
Query: 239 SD 240
D
Sbjct: 763 ID 764
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 119/286 (41%), Gaps = 39/286 (13%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTG--HPEKIPAIIQEMKASSIMPDSYTYNV 61
KA+ L++ M++ + FN+L+ K+G P ++ ++ S + PD+ TYN
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNT 302
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE-- 119
+ A + +++ GA +V E+M+ R D T++ + S+Y GL +AER ELE
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAH-RCQPDLWTYNAMISVYGRCGLAAEAERLFMELELK 361
Query: 120 ------------------NRNAH---------------RDLSAYQFLITLYGQTGNLSEV 146
RN +D Y +I +YG+ G L
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421
Query: 147 YRIWRSLR-LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205
++++ ++ L+ N I+Y +I L A E ++ + +I
Sbjct: 422 LQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALIC 481
Query: 206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 251
YAK G+ E AE+ R G P+ + + D LR + + A
Sbjct: 482 GYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/349 (20%), Positives = 149/349 (42%), Gaps = 12/349 (3%)
Query: 3 EKAEALLEKMKELNLGFSSMP-FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
E A ++ + + F+ P + ++ Y K +K +++ ++ S PD T+N
Sbjct: 733 ETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNS 792
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
M A A A + M RDG + L ++ V+ G E+ ++EL++
Sbjct: 793 LMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVD-GRLEELYVVVEELQDM 851
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
S+ ++ + + GN+ EV +I+ S++ A Y MI++L K + A
Sbjct: 852 GFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDA 911
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
E E E ++ + N M+ Y + ++ +R + G +P+ T+
Sbjct: 912 EIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971
Query: 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG-FLEILK 300
Y R+ + +++ + G P +T ++ + F ++K ++ AE F E+L
Sbjct: 972 YCRDRRPEEGYLLMQQMRNLGLD------PKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025
Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPV--MLRRLKMEKVEVSEASKKLL 347
K + L + +++ +G S +L+ +K +E + A+ LL
Sbjct: 1026 KGL-KLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLL 1073
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 1/175 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+K + +++KE L +N+L+ +Y + PE+ ++Q+M+ + P TY
Sbjct: 944 KKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSL 1003
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ A + AE++ EE+ G + D + + + I ++G KAE+ L+ ++N
Sbjct: 1004 ISAFGKQKCLEQAEQLFEELLSKG-LKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAG 1062
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177
L+ L+ Y +GN E ++ +L+ + Y ++I + KD
Sbjct: 1063 IEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKD 1117
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM--KLAVDC 254
++V N M+G Y++ G+ A+EL + R+RG P+ ++ + L++G + LAV+
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284
Query: 255 LEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPL 314
L D R G + P + T T + ++ ++DGA K +D+ +P
Sbjct: 285 L----DMVRNSGLR--PDAITYNTLLSACSRDSNLDGA-------VKVFEDMEAHRCQPD 331
Query: 315 IRTYAA 320
+ TY A
Sbjct: 332 LWTYNA 337
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 3/208 (1%)
Query: 14 ELNL-GF--SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 70
EL L GF ++ +NSL+ +A+ + EK+ + Q+M+ D TYN +
Sbjct: 357 ELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQG 416
Query: 71 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 130
+ A ++ ++MK D T++ L +A +A + E+ + L Y
Sbjct: 417 QLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTY 476
Query: 131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 190
LI Y + G E + + + N++Y M+ VL+ + A +++ S
Sbjct: 477 SALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMIS 536
Query: 191 GCATYDIRVTNVMIGAYAKEGRLENAEE 218
T + +MI KE R ++ ++
Sbjct: 537 DGHTPSYTLYELMILGLMKENRSDDIQK 564
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
KAE LL+ MK + + + LM Y+ +G+P++ ++ +K + + + Y+ +
Sbjct: 1050 KAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVI 1109
Query: 64 RALAAVNDI-SGAERVIEEMKRDGRVAAD---WTTFSNLASIYVE 104
A D SG ER++ EMK++G + D WT F AS E
Sbjct: 1110 DAYLRSKDYNSGIERLL-EMKKEG-LEPDHRIWTCFVRAASFSKE 1152
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 17/264 (6%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
+ + AE +M + + + +S G EK ++I+EM +PD+ TY+
Sbjct: 428 LLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYS 487
Query: 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
+ L + + A + EEMKR G V AD T++ + + +AGL E+A + E+
Sbjct: 488 KVLNYLCNASKMELAFLLFEEMKRGGLV-ADVYTYTIMVDSFCKAGLIEQARKWFNEMRE 546
Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYL------------ 166
++ Y LI Y + +S ++ ++ PN S L
Sbjct: 547 VGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEK 606
Query: 167 --NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 224
+ + + KD+P + FK+++ ++ ++ + K R+E A +L +
Sbjct: 607 ACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 666
Query: 225 RRGADPNAKTWEIFSDYYLRNGDM 248
G +PN ++ D + G +
Sbjct: 667 MEGCEPNQIVYDALIDGLCKVGKL 690
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 105/272 (38%), Gaps = 21/272 (7%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND------ISGAER 77
FNSL+ Y +G ++++M MP YN+ + ++ D + AE+
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEK 434
Query: 78 VIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 137
EM G V + S+ AG +EKA ++E+ + D S Y ++
Sbjct: 435 AYSEMLAAG-VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYL 493
Query: 138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW-ESGCATYD 196
+ + ++ ++ +Y M+ + A K F E E GC T +
Sbjct: 494 CNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGC-TPN 552
Query: 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 256
+ +I AY K ++ A EL E G PN T+ D + + G ++ A E
Sbjct: 553 VVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFE 612
Query: 257 KAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD 288
+ G K VP + +F+Q D
Sbjct: 613 RMC------GSKDVPDVDM------YFKQYDD 632
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/295 (19%), Positives = 110/295 (37%), Gaps = 51/295 (17%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+ +L+ + K+ E+ ++ M P+ Y+ + L V + A+ V EM
Sbjct: 642 YGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMS 701
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
G A T+S+L Y + + A + L ++ + ++ Y +I + G
Sbjct: 702 EHG-FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT 760
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203
E Y++ + + E GC ++ M
Sbjct: 761 DEAYKLMQMME----------------------------------EKGCQP-NVVTYTAM 785
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263
I + G++E EL ER +G PN T+ + D+ +NG + +A + LE+ T
Sbjct: 786 IDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQT-- 843
Query: 264 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318
W + R + F +E F+E L +D++G + P + Y
Sbjct: 844 ----HWPTHTAGYRKVIEGFNKE--------FIESL-GLLDEIGQDDTAPFLSVY 885
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T++A L++ M+E + + + +++ + G E +++ M + + P+ TY V
Sbjct: 760 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA--GLFEKAERALKELE 119
+ + A ++EEMK+ W T + +E F ++ L E+
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMKQ-----THWPTHTAGYRKVIEGFNKEFIESLGLLDEIG 874
Query: 120 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 155
+ LS Y+ LI NL + R+ +LRL
Sbjct: 875 QDDTAPFLSVYRLLI------DNLIKAQRLEMALRL 904
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 19/270 (7%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+KA L M E FN+++ + K+ EK + + ++ + D+ TYNV
Sbjct: 143 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSV-DTVTYNVI 201
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ + A V++EM G + + TT++ + + AG A E++ R+
Sbjct: 202 LNGWCLIKRTPKALEVLKEMVERG-INPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRD 260
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLPG 180
D+ Y ++ +G G + ++ + P+ A +Y MIQVL ++
Sbjct: 261 CEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVA--TYNAMIQVLCKKDNVEN 318
Query: 181 AEKCFKE-----WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
A F+E +E TY NV+I G EEL +R G +PN +T+
Sbjct: 319 AVVMFEEMVRRGYEPNVTTY-----NVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTY 373
Query: 236 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 265
+ YY +++ A+ EK G GD
Sbjct: 374 NMMIRYYSECSEVEKALGLFEK---MGSGD 400
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/291 (19%), Positives = 117/291 (40%), Gaps = 8/291 (2%)
Query: 7 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL 66
+L+ +M+ L +G S F + YA G P+K + M D ++N + L
Sbjct: 112 SLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVL 171
Query: 67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 126
+ A + ++ GR + D T++ + + + KA LKE+ R + +
Sbjct: 172 CKSKRVEKAYELFRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPN 229
Query: 127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 186
L+ Y ++ + + G + + + ++ ++Y ++ ++ A F
Sbjct: 230 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFD 289
Query: 187 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246
E + N MI K+ +ENA + E RRG +PN T+ + G
Sbjct: 290 EMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAG 349
Query: 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 297
+ + +++ + G P+ +T +R++ + +V+ A G E
Sbjct: 350 EFSRGEELMQRMENEG------CEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 99/264 (37%), Gaps = 4/264 (1%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T KA +L++M E + + +N+++ + + G EMK D TY
Sbjct: 211 TPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTT 270
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ +I A V +EM R+G V T++ + + + E A +E+ R
Sbjct: 271 VVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR 329
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
+++ Y LI G S + + + +Y MI+ ++ A
Sbjct: 330 GYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKA 389
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN---AEELKERARRRGADPNAKTWEIF 238
F++ SG ++ N++I R E+ A +L RG P T+
Sbjct: 390 LGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRV 449
Query: 239 SDYYLRNGDMKLAVDCLEKAIDTG 262
+ L G+ A + L +G
Sbjct: 450 LNGLLLTGNQAFAKEILRLQSKSG 473
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 113/257 (43%), Gaps = 5/257 (1%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T+ A LL KM++ L + +N+++ K H + + +EM+ I P+ TY+
Sbjct: 237 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSS 296
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ L S A R++ +M + ++ D TFS L +V+ G +AE+ E+ R
Sbjct: 297 LISCLCNYGRWSDASRLLSDMI-ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLP 179
+ + Y LI + L E +++ + + FP+ ++Y +I+ K +
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDV--VTYNTLIKGFCKYKRVE 413
Query: 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239
+ F+E + N++I + G + A+E+ + G PN T+
Sbjct: 414 EGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLL 473
Query: 240 DYYLRNGDMKLAVDCLE 256
D +NG ++ A+ E
Sbjct: 474 DGLCKNGKLEKAMVVFE 490
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 131/321 (40%), Gaps = 7/321 (2%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+A AL+++M + + ++ K G + ++ +M+ + P YN +
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
L + A + +EM+ G + + T+S+L S G + A R L ++ R
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKG-IRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKI 322
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
+ D+ + LI + + G L E +++ + + + ++Y ++I L A++
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243
F+ S D+ N +I + K R+E E+ +RG N T+ I
Sbjct: 383 MFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 442
Query: 244 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303
+ GD +A + ++ + G P+ T T + + ++ A E L+++
Sbjct: 443 QAGDCDMAQEIFKEMVSDG------VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 304 DDLGVEVFEPLIRTYAAAGRT 324
+ + + +I AG+
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKV 517
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 100/244 (40%), Gaps = 1/244 (0%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+AE L ++M + ++ S + ++SL+ + ++ + + M + PD TYN +
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ + V EM + G V + T++ L +AG + A+ KE+ +
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVG-NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
++ Y L+ + G L + ++ L+ + +Y MI+ + +
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243
F D+ N MI + ++G E A+ L + + G PN+ + L
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582
Query: 244 RNGD 247
R+GD
Sbjct: 583 RDGD 586
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 1/238 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
++A+ + E M + + +N+L+ + K E+ + +EM ++ ++ TYN+
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
++ L D A+ + +EM DG V + T++ L + G EKA + L+
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
+ Y +I + G + + + ++ +L L ++Y MI A+
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
FKE + + N +I A ++G E + EL + R G +A T + ++
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTN 614
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/346 (18%), Positives = 128/346 (36%), Gaps = 54/346 (15%)
Query: 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79
S + F+ L++ AK + + ++ ++M+ I + YTY++ + + + A V+
Sbjct: 80 SIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVL 139
Query: 80 EEMKRDGRVAADWTTFSNLASIYVEA------------------------------GLF- 108
+M + G + T S+L + Y + GLF
Sbjct: 140 GKMMKLG-YEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 109 -EKAERALKELEN---RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS 164
KA A+ ++ + DL Y ++ + G+ + + + +
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258
Query: 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 224
Y +I L K + A FKE E+ ++ + +I GR +A L
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 225 RRGADPNAKTWEIFSDYYLRNGDM----KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 280
R +P+ T+ D +++ G + KL + ++++ID PS T + +
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID----------PSIVTYSSLI 368
Query: 281 RHFEQEKDVDGAEGFLEIL--KKAVDDLGVEVFEPLIRTYAAAGRT 324
F +D A+ E + K D V + LI+ + R
Sbjct: 369 NGFCMHDRLDEAKQMFEFMVSKHCFPD--VVTYNTLIKGFCKYKRV 412
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 3/259 (1%)
Query: 3 EKAEALLEKMKEL-NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
EK L+KMK + + + +N L+ +A++G +++ A+ +++ S + PD YT+N
Sbjct: 189 EKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNG 248
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
M A I E V+ M R D TF+ L Y + FEK E+ K L
Sbjct: 249 VMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRS 307
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
L + +I YG+ + + +++ + + I+Y MI + + A
Sbjct: 308 KEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRA 367
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
+ F+E N M+ Y + G A++L A P+A T++
Sbjct: 368 REIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427
Query: 242 YLRNGDMKLAVDCLEKAID 260
Y + DMK V L K ++
Sbjct: 428 YTK-ADMKEQVQILMKKME 445
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 101/244 (41%), Gaps = 4/244 (1%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA-ERV---I 79
++ L+++ K G + EMK S PD+ YN + A D + A E+V +
Sbjct: 136 YSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYL 195
Query: 80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139
++MK R + T++ L + ++G ++ K+L+ D+ + ++ YG+
Sbjct: 196 DKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGK 255
Query: 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 199
G + E+ + +R I++ +I ++ E+ FK +
Sbjct: 256 NGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPT 315
Query: 200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
N MI Y K ++ AE + ++ P+ T+E Y G + A + E+
Sbjct: 316 FNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVG 375
Query: 260 DTGR 263
++ R
Sbjct: 376 ESDR 379
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 15/242 (6%)
Query: 91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 150
D +S L S+ + G A E++N D S Y LIT + T + ++
Sbjct: 132 DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKV 191
Query: 151 R-------SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203
R + PN ++Y +++ + FK+ + + D+ N +
Sbjct: 192 RGYLDKMKGIERCQPNV--VTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGV 249
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263
+ AY K G ++ E + R R P+ T+ + D Y + + + + + +
Sbjct: 250 MDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRS-- 307
Query: 264 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323
K P+ T + + ++ + + +D AE + + +E +I Y G
Sbjct: 308 ----KEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGS 363
Query: 324 TS 325
S
Sbjct: 364 VS 365
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 36/172 (20%)
Query: 1 MTEKAEALLEKMK-------------------------ELNLGFSSM----------PFN 25
M ++ EA+L +M+ ++ F S+ FN
Sbjct: 258 MIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFN 317
Query: 26 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 85
S++ Y K +K + ++M + +P TY + +S A + EE+
Sbjct: 318 SMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGES 377
Query: 86 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 137
RV +T + + +Y GL+ +A++ H D S Y+FL Y
Sbjct: 378 DRVLKA-STLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAY 428
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 115/293 (39%), Gaps = 7/293 (2%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+NS+++ K G ++ ++ +M P++ TYN + L N + A + +
Sbjct: 333 YNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLT 392
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
G + D TF++L A +E+ ++ D Y LI G L
Sbjct: 393 SKG-ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203
E + + + L+ + I+Y +I AE+ F E E + + N +
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263
I K R+E+A +L ++ G P+ T+ ++ R GD+K A D ++ G
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG- 570
Query: 264 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316
P T T + + V+ A L ++ +L + P+I+
Sbjct: 571 -----CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQ 618
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 41/251 (16%)
Query: 10 EKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM-KASSIMPDSYTYNVWMRALAA 68
E+M E +S++ N ++ + K G E IQEM PD YT+N + L
Sbjct: 248 EQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCK 307
Query: 69 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS 128
+ A +++ M ++G D T++++ S + G ++A L ++ R+ +
Sbjct: 308 AGHVKHAIEIMDVMLQEG-YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366
Query: 129 AYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 186
Y LI+ + + E + R L + P+ ++ ++IQ L
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVC--TFNSLIQGL-------------- 410
Query: 187 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246
C T + RV A EL E R +G +P+ T+ + D G
Sbjct: 411 -----CLTRNHRV----------------AMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449
Query: 247 DMKLAVDCLEK 257
+ A++ L++
Sbjct: 450 KLDEALNMLKQ 460
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 86/185 (46%), Gaps = 1/185 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
++A +L++M+ S + +N+L+ + K + I EM+ + +S TYN
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ L + A +++++M +G+ D T+++L + + G +KA ++ + +
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQ-KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D+ Y LI+ + G + ++ RS+++ N +Y +IQ L + A
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAI 630
Query: 183 KCFKE 187
F+E
Sbjct: 631 NLFRE 635
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T +AE + ++M+ + +S+ +N+L+ K+ E ++ +M PD YTYN
Sbjct: 486 TREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNS 545
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ DI A +++ M +G D T+ L S +AG E A + L+ ++ +
Sbjct: 546 LLTHFCRGGDIKKAADIVQAMTSNG-CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL 153
+ AY +I + +E ++R +
Sbjct: 605 GINLTPHAYNPVIQGLFRKRKTTEAINLFREM 636
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 103/271 (38%), Gaps = 41/271 (15%)
Query: 46 EMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA 105
+M I PD T+NV ++AL + + A ++E+M G V D TF+ + Y+E
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV-PDEKTFTTVMQGYIEE 237
Query: 106 GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 165
G + A R +++ + ++ + + G + +
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA------------------- 278
Query: 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 225
LN IQ + N + F N ++ K G +++A E+ + +
Sbjct: 279 LNFIQEMSNQDGFFPDQYTF---------------NTLVNGLCKAGHVKHAIEIMDVMLQ 323
Query: 226 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 285
G DP+ T+ + G++K AV+ L++ I P++ T T + +
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITR------DCSPNTVTYNTLISTLCK 377
Query: 286 EKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316
E V+ A +L V F LI+
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQ 408
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 7/194 (3%)
Query: 105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS 164
+G F+ ++ L+++++ S + LI Y Q E+ + + F +
Sbjct: 96 SGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTH 155
Query: 165 YLN-MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 223
+ N M+ +LV+ L E + D+ NV+I A + +L A + E
Sbjct: 156 FYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM 215
Query: 224 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283
G P+ KT+ Y+ GD+ A+ E+ ++ G W S+ ++ + F
Sbjct: 216 PSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEF----GCSW--SNVSVNVIVHGF 269
Query: 284 EQEKDVDGAEGFLE 297
+E V+ A F++
Sbjct: 270 CKEGRVEDALNFIQ 283
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 116/257 (45%), Gaps = 5/257 (1%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
T+ A LL KM+ + + FN+++ K H + + +EM+ I P+ TY+
Sbjct: 241 TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS 300
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ L + S A +++ +M + ++ + TF+ L +V+ G F +AE+ ++ R
Sbjct: 301 LISCLCSYGRWSDASQLLSDMI-EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 359
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLP 179
+ D+ Y L+ + L + +++ + + FP+ ++Y +I+ K +
Sbjct: 360 SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDV--VTYNTLIKGFCKSKRVE 417
Query: 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239
+ F+E D +I +G +NA+++ ++ G P+ T+ I
Sbjct: 418 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 477
Query: 240 DYYLRNGDMKLAVDCLE 256
D NG ++ A++ +
Sbjct: 478 DGLCNNGKLEKALEVFD 494
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 97/250 (38%), Gaps = 13/250 (5%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+AE L + M + ++ +NSL+ + +K + + M + PD TYN +
Sbjct: 348 EAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 407
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ + + EM G V D T++ L G + A++ K++ +
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVG-DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
D+ Y L+ G L + ++ ++ + Y MI+ + A K
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK------AGK 520
Query: 184 CFKEWESGCATY------DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237
W+ C+ ++ N MI + L+ A L ++ + G PN+ T+
Sbjct: 521 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNT 580
Query: 238 FSDYYLRNGD 247
+LR+GD
Sbjct: 581 LIRAHLRDGD 590
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 9/285 (3%)
Query: 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64
A LL M E + + + FN+L+ + K G + + +M SI PD +TYN +
Sbjct: 314 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVN 373
Query: 65 ALAAVNDISGAERVIEEM-KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ + A+++ E M +D D T++ L + ++ E +E+ +R
Sbjct: 374 GFCMHDRLDKAKQMFEFMVSKD--CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
D Y LI G+ ++++ + ++Y ++ L N L A +
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 491
Query: 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243
F + DI + MI K G++++ +L +G PN T+
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 551
Query: 244 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD 288
++ A L+K + G +P+S T T +R ++ D
Sbjct: 552 SKRLLQEAYALLKKMKEDGP------LPNSGTYNTLIRAHLRDGD 590
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 1/222 (0%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+KA+ + E M + + +N+L+ + K+ E + +EM ++ D+ TY
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
++ L D A++V ++M DG V D T+S L G EKA ++
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D+ Y +I + G + + + ++ SL L ++Y MI L + + L A
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 224
K+ + + N +I A+ ++G + EL R
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMR 602
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/346 (19%), Positives = 127/346 (36%), Gaps = 54/346 (15%)
Query: 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79
S + FN L++ AK + + ++ ++M+ I+ YTYN+ + + IS A ++
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 80 EEMKRDGRVAADWTTFSNLASIYVEA------------------------------GLF- 108
+M + G T S+L + Y GLF
Sbjct: 144 GKMMKLG-YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 109 -EKAERALKELE---NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS 164
KA A+ ++ R +L Y ++ + G+ + + A +
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 224
+ +I L + + A FKE E+ ++ + +I GR +A +L
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 225 RRGADPNAKTWEIFSDYYLRNGDM----KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 280
+ +PN T+ D +++ G KL D ++++ID P T + +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID----------PDIFTYNSLV 372
Query: 281 RHFEQEKDVDGAEGFLEIL--KKAVDDLGVEVFEPLIRTYAAAGRT 324
F +D A+ E + K D V + LI+ + + R
Sbjct: 373 NGFCMHDRLDKAKQMFEFMVSKDCFPD--VVTYNTLIKGFCKSKRV 416
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 42 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101
A++++MK +P+S TYN +RA D + + +I EM R R D +T +A++
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM-RSCRFVGDASTIGLVANM 619
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 123/268 (45%), Gaps = 7/268 (2%)
Query: 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS---IMPDSY 57
M + +ALL KMKEL L ++ +N+L+ Y G PE+ ++ M + P+
Sbjct: 131 MEDAVQALL-KMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIR 189
Query: 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 117
T+NV ++A + A V+++M+ G V D T++ +A+ YV+ G +AE + E
Sbjct: 190 TFNVLVQAWCKKKKVEEAWEVVKKMEECG-VRPDTVTYNTIATCYVQKGETVRAESEVVE 248
Query: 118 --LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175
+ A + ++ Y + G + + R R ++ + + ++I V +
Sbjct: 249 KMVMKEKAKPNGRTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEV 308
Query: 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
D G ++ + D+ + ++ A++ G +E A ++ + + G P+A +
Sbjct: 309 MDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAY 368
Query: 236 EIFSDYYLRNGDMKLAVDCLEKAIDTGR 263
I + Y+R + K A + LE I R
Sbjct: 369 SILAKGYVRAKEPKKAEELLETLIVESR 396
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 7/158 (4%)
Query: 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
+ +MKE+ + + + FNSL+ + + + I ++ MK ++ D TY+ M A +
Sbjct: 282 FVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWS 341
Query: 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL--ENRNAHR 125
+ + A +V +EM + G V D +S LA YV A +KAE L+ L E+R
Sbjct: 342 SAGYMEKAAQVFKEMVKAG-VKPDAHAYSILAKGYVRAKEPKKAEELLETLIVESRP--- 397
Query: 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 163
++ + +I+ + G++ + R++ + F + NI
Sbjct: 398 NVVIFTTVISGWCSNGSMDDAMRVFNKM-CKFGVSPNI 434
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
+L MKE N+ + ++++M ++ G+ EK + +EM + + PD++ Y++ +
Sbjct: 317 VLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYV 376
Query: 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 127
+ AE ++E + + R + F+ + S + G + A R ++ ++
Sbjct: 377 RAKEPKKAEELLETLIVESR--PNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNI 434
Query: 128 SAYQFLITLY 137
++ L+ Y
Sbjct: 435 KTFETLMWGY 444
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/248 (19%), Positives = 108/248 (43%), Gaps = 14/248 (5%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGH-----PEKIPAIIQEMKASSIMPDSY 57
E+A +++KM+E + ++ +N++ T Y + G E + ++ + KA P+
Sbjct: 205 EEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAK---PNGR 261
Query: 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 117
T + + + R + MK + RV A+ F++L + +VE + + L
Sbjct: 262 TCGIVVGGYCREGRVRDGLRFVRRMK-EMRVEANLVVFNSLINGFVEVMDRDGIDEVLTL 320
Query: 118 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177
++ N D+ Y ++ + G + + ++++ + A +Y + + V K+
Sbjct: 321 MKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKE 380
Query: 178 LPGAEKCFKEW--ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
AE+ + ES ++ + +I + G +++A + + + G PN KT+
Sbjct: 381 PKKAEELLETLIVES---RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTF 437
Query: 236 EIFSDYYL 243
E YL
Sbjct: 438 ETLMWGYL 445
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 110/239 (46%), Gaps = 1/239 (0%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+N+L+ + K + ++ M++ PD+ TYN+ + +L + + A +V+ ++
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
D T++ L + G ++A + + E+ +R D+ Y +I + G +
Sbjct: 221 SDN-CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203
+ + R+L L ISY +++ L+N EK + S ++ +++
Sbjct: 280 DRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSIL 339
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
I ++G++E A L + + +G P+A +++ + R G + +A++ LE I G
Sbjct: 340 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG 398
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 9/247 (3%)
Query: 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 113
PD + YN + +N I A RV++ M R + D T++ + G + A +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214
Query: 114 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173
L +L + N + Y LI G + E ++ + +Y +I+ +
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274
Query: 174 NLKDLPGAEKCFKEWE-SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 232
+ A + + E GC D+ N+++ A +G+ E E+L + DPN
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEP-DVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNV 333
Query: 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 292
T+ I R+G ++ A++ L+ + G P + + + F +E +D A
Sbjct: 334 VTYSILITTLCRDGKIEEAMNLLKLMKEKG------LTPDAYSYDPLIAAFCREGRLDVA 387
Query: 293 EGFLEIL 299
FLE +
Sbjct: 388 IEFLETM 394
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/303 (17%), Positives = 119/303 (39%), Gaps = 8/303 (2%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+ A +L++M+ + ++ +N ++ G + ++ ++ + + P TY +
Sbjct: 175 DDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTIL 234
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ A + A ++++EM G + D T++ + + G+ ++A ++ LE +
Sbjct: 235 IEATMLEGGVDEALKLMDEMLSRG-LKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG 293
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
D+ +Y L+ G E ++ + + ++Y +I L + A
Sbjct: 294 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 353
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
K + T D + +I A+ +EGRL+ A E E G P+ +
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATL 413
Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD-VDGAEGFLEILKK 301
+NG A++ K + G P+S + T D + LE++
Sbjct: 414 CKNGKADQALEIFGKLGEVG------CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN 467
Query: 302 AVD 304
+D
Sbjct: 468 GID 470
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 15/243 (6%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
E+ E L+ KM + + ++ L+T + G E+ +++ MK + PD+Y+Y+
Sbjct: 315 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ A + A +E M DG D ++ + + + G ++A +L
Sbjct: 375 IAAFCREGRLDVAIEFLETMISDG-CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-------L 175
+ S+Y + + +G+ + + + I+Y +MI L
Sbjct: 434 CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAF 493
Query: 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
+ L C E+ TY+I V++G + K R+E+A + E G PN T+
Sbjct: 494 ELLVDMRSC--EFHPSVVTYNI----VLLG-FCKAHRIEDAINVLESMVGNGCRPNETTY 546
Query: 236 EIF 238
+
Sbjct: 547 TVL 549
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 122/321 (38%), Gaps = 57/321 (17%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
++A L+++M L +N+++ K G ++ +++ ++ PD +YN+
Sbjct: 244 VDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNI 303
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+RAL E+++ +M + + + T+S L + G E+A LK ++ +
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSE-KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEK 362
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
D +Y LI + + G L + ++ +++ LP
Sbjct: 363 GLTPDAYSYDPLIAAFCREGRLDVA-------------------IEFLETMISDGCLP-- 401
Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
DI N ++ K G+ + A E+ + G PN+ ++
Sbjct: 402 --------------DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSA 447
Query: 242 YLRNGD----MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 297
+GD + + ++ + ID P T + + +E VD A E
Sbjct: 448 LWSSGDKIRALHMILEMMSNGID----------PDEITYNSMISCLCREGMVDEA---FE 494
Query: 298 ILKKAVDDLGVEVFEPLIRTY 318
+L VD E F P + TY
Sbjct: 495 LL---VDMRSCE-FHPSVVTY 511
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 112/267 (41%), Gaps = 14/267 (5%)
Query: 3 EKAEALLEKMKELNLGFSSMP----FNSLMTLYAKTGHPEKIPAIIQEMKASSIM-PDSY 57
EKA LL M GF P +N+L+ + K+ K + +++K+ S+ PD
Sbjct: 223 EKALELLGVMS----GFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVV 278
Query: 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 117
TY + + A ++++M R G + TF+ L Y +AG AE +
Sbjct: 279 TYTSMISGYCKAGKMREASSLLDDMLRLGIYPTN-VTFNVLVDGYAKAGEMLTAEEIRGK 337
Query: 118 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNL 175
+ + D+ + LI Y + G +S+ +R+W + R FPN +Y +I L N
Sbjct: 338 MISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNA--FTYSILINALCNE 395
Query: 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235
L A + + S + N +I + K G++ A + E ++ P+ T+
Sbjct: 396 NRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITF 455
Query: 236 EIFSDYYLRNGDMKLAVDCLEKAIDTG 262
I + G M AV K + G
Sbjct: 456 TILIIGHCMKGRMFEAVSIFHKMVAIG 482
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 39/242 (16%)
Query: 57 YTYNVWMRAL--AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF------ 108
+TYN+ R+L A ++D++G ++ E MK DG V+ + L S + E G
Sbjct: 104 WTYNLLTRSLCKAGLHDLAG--QMFECMKSDG-VSPNNRLLGFLVSSFAEKGKLHFATAL 160
Query: 109 ------------------------EKAERALKELENR---NAHRDLSAYQFLITLYGQTG 141
++ E A+K + + D + LI G
Sbjct: 161 LLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVG 220
Query: 142 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG-CATYDIRVT 200
+ + + ++Y +IQ +L A + FK+ +SG + D+
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTY 280
Query: 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 260
MI Y K G++ A L + R G P T+ + D Y + G+M A + K I
Sbjct: 281 TSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMIS 340
Query: 261 TG 262
G
Sbjct: 341 FG 342
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 128/288 (44%), Gaps = 7/288 (2%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
++A +L +M L +++ FN L++ + K + I +EM PD YT+N
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
+ L V++I A ++ +M +G V A+ T++ L + ++ G ++A + + E+ +
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEG-VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559
Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
+ D Y LI + G + + ++ + +NIS +I L + A
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619
Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
+ KE +T DI N +I + GR+E+ + + + G P+ T+ +
Sbjct: 620 EFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWL 679
Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD 290
+ G + A L++ I+ G +VP+ T ++ ++ +D
Sbjct: 680 CKGGFVYDACLLLDEGIEDG------FVPNHRTWSILLQSIIPQETLD 721
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 1/230 (0%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
+NSL+ Y K G ++ +M+ P+ Y+Y + + + I A V+ EM
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS 451
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
DG + + F+ L S + + +A +E+ + D+ + LI+ + +
Sbjct: 452 ADG-LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 510
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203
+ R + ++Y +I + ++ A K E + D N +
Sbjct: 511 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSL 570
Query: 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVD 253
I + G ++ A L E+ R G P+ + I + R+G ++ AV+
Sbjct: 571 IKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 118/294 (40%), Gaps = 14/294 (4%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
F +M + + +++++M +P+S Y + +L+ N ++ A +++EEM
Sbjct: 220 FGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMF 279
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
G V D TF+++ + +A + + + R D Y +L+ + G +
Sbjct: 280 LMGCVP-DAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRV 338
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNV 202
+ L P + + +I V L A+ + + D+ N
Sbjct: 339 DAA----KDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS 394
Query: 203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
+I Y KEG + A E+ R +G PN ++ I D + + G + A + L +
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEM---- 450
Query: 263 RGDGGKWVPSSETIRTFMRHFEQEKDV-DGAEGFLEILKKAVDDLGVEVFEPLI 315
DG K P++ + F +E + + E F E+ +K V F LI
Sbjct: 451 SADGLK--PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKP-DVYTFNSLI 501
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 7/231 (3%)
Query: 34 TGHPEKIPA-IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 92
+G+ K+ A + +M + I P +T+ V M+A AVN+I A ++ +M + G V +
Sbjct: 194 SGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCV-PNS 252
Query: 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 152
+ L + +A + L+E+ D + +I + ++E ++
Sbjct: 253 VIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNR 312
Query: 153 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 212
+ + +I+Y ++ L + + A+ F +I + N +I + GR
Sbjct: 313 MLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP----EIVIFNTLIHGFVTHGR 368
Query: 213 LENAEE-LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
L++A+ L + G P+ T+ Y + G + LA++ L + G
Sbjct: 369 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKG 419
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 99/264 (37%), Gaps = 31/264 (11%)
Query: 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
+ A +LL M + +S+ + +L+ +K + +++EM +PD+ T+N
Sbjct: 234 DSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDV 293
Query: 63 MRALAAVNDISGAERVIEEM-------------------KRDGRVAA-----------DW 92
+ L + I+ A +++ M + GRV A +
Sbjct: 294 ILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI 353
Query: 93 TTFSNLASIYVEAGLFEKAERALKEL-ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 151
F+ L +V G + A+ L ++ + D+ Y LI Y + G + +
Sbjct: 354 VIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLH 413
Query: 152 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 211
+R SY ++ L + A E + + N +I A+ KE
Sbjct: 414 DMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473
Query: 212 RLENAEELKERARRRGADPNAKTW 235
R+ A E+ R+G P+ T+
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTF 497
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 3/251 (1%)
Query: 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
L KM+E N+ S + ++ ++ K G + ++ EM+ I D TY+ + L
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 68 AVNDISGAERVIEEMKRDGR-VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 126
+++ EM GR + D TFS L ++V+ G +A+ E+ R D
Sbjct: 292 NDGKWDDGAKMLREMI--GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349
Query: 127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 186
Y LI + + L E +++ + ++Y +I K + + F+
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409
Query: 187 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246
E S + N ++ + + G+L A+EL + RG P+ T+ I D NG
Sbjct: 410 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469
Query: 247 DMKLAVDCLEK 257
++ A++ EK
Sbjct: 470 ELNKALEIFEK 480
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 135/325 (41%), Gaps = 11/325 (3%)
Query: 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
+A L+++M E + + ++ K+G+ + ++M+ +I Y++
Sbjct: 191 VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSI 250
Query: 62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
+ +L A + EM+ G + AD T+S+L G ++ + L+E+ R
Sbjct: 251 VIDSLCKDGSFDDALSLFNEMEMKG-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR 309
Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL--RLAFPNTANISYLNMIQVLVNLKDLP 179
N D+ + LI ++ + G L E ++ + R P+T I+Y ++I L
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT--ITYNSLIDGFCKENCLH 367
Query: 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239
A + F S DI +++I +Y K R+++ L +G PN T+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299
+ ++G + A + ++ + G PS T + +++ A E +
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRG------VPPSVVTYGILLDGLCDNGELNKALEIFEKM 481
Query: 300 KKAVDDLGVEVFEPLIRTYAAAGRT 324
+K+ LG+ ++ +I A +
Sbjct: 482 QKSRMTLGIGIYNIIIHGMCNASKV 506
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 107/260 (41%), Gaps = 13/260 (5%)
Query: 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
+A+ L +M + ++ +NSL+ + K + + M + PD TY++ +
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILI 392
Query: 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
+ + R+ E+ G + + T++ L + ++G A+ +E+ +R
Sbjct: 393 NSYCKAKRVDDGMRLFREISSKGLIP-NTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451
Query: 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183
+ Y L+ G L++ I+ ++ + T I N+I + + A K
Sbjct: 452 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKS-RMTLGIGIYNII-----IHGMCNASK 505
Query: 184 CFKEWESGCATYD------IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237
W C+ D + NVMIG K+G L A+ L + + G P+ T+ I
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 565
Query: 238 FSDYYLRNGDMKLAVDCLEK 257
+L + +V+ +E+
Sbjct: 566 LIRAHLGGSGLISSVELIEE 585
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 3/218 (1%)
Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83
++ L+ Y K + + +E+ + ++P++ TYN + ++ A+ + +EM
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447
Query: 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143
G V T+ L + G KA ++++ + Y +I +
Sbjct: 448 SRG-VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506
Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW-ESGCATYDIRVTNV 202
+ + ++ SL ++Y MI L L A+ F++ E GC T D N+
Sbjct: 507 DDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC-TPDDFTYNI 565
Query: 203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
+I A+ L ++ EL E + G ++ T ++ D
Sbjct: 566 LIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/275 (17%), Positives = 101/275 (36%), Gaps = 7/275 (2%)
Query: 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 113
PD+ T++ + +S A +++ M + + D T S L + G +A
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMV-EMKQRPDLVTVSTLINGLCLKGRVSEALV 196
Query: 114 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173
+ + D Y ++ ++GN + ++R + + + Y +I L
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256
Query: 174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK 233
A F E E D+ + +IG +G+ ++ ++ R P+
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 316
Query: 234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 293
T+ D +++ G + A + + I G P + T + + F +E + A
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRG------IAPDTITYNSLIDGFCKENCLHEAN 370
Query: 294 GFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328
+++ + + + LI +Y A R M
Sbjct: 371 QMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,196,144
Number of Sequences: 539616
Number of extensions: 5335891
Number of successful extensions: 19122
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 15537
Number of HSP's gapped (non-prelim): 2006
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)