Query 018582
Match_columns 353
No_of_seqs 597 out of 1533
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 10:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.9E-60 4.1E-65 436.4 44.2 345 1-352 452-800 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6E-60 1.3E-64 433.1 44.1 327 19-352 435-765 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1E-53 2.2E-58 388.7 34.5 331 2-352 174-505 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-52 2.7E-57 381.5 35.6 333 1-352 102-437 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.9E-52 4.1E-57 388.9 33.4 333 1-352 237-600 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 4.4E-51 9.5E-56 379.7 35.5 334 2-353 137-501 (857)
7 PRK11788 tetratricopeptide rep 100.0 1.9E-24 4.2E-29 185.3 34.3 309 20-342 34-354 (389)
8 PRK11788 tetratricopeptide rep 100.0 1.6E-24 3.5E-29 185.8 33.1 294 2-309 51-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-23 5.9E-28 197.2 39.6 316 2-335 549-866 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 6.3E-23 1.4E-27 194.7 41.4 306 2-323 481-819 (899)
11 PRK15174 Vi polysaccharide exp 99.9 1.4E-20 2.9E-25 169.5 38.5 311 2-329 58-373 (656)
12 PRK15174 Vi polysaccharide exp 99.9 2.3E-19 4.9E-24 161.6 38.1 302 1-318 91-397 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-18 3.5E-23 156.4 39.5 319 2-329 143-563 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 1.5E-19 3.3E-24 150.9 28.1 324 2-345 132-493 (966)
15 PRK11447 cellulose synthase su 99.9 2.6E-17 5.6E-22 158.1 40.2 307 2-324 285-687 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-17 4.1E-22 149.6 36.8 302 23-339 129-498 (615)
17 PRK10049 pgaA outer membrane p 99.8 2.5E-16 5.4E-21 145.0 40.2 339 2-348 31-433 (765)
18 PRK11447 cellulose synthase su 99.8 8E-17 1.7E-21 154.8 38.3 319 2-339 367-745 (1157)
19 PRK10049 pgaA outer membrane p 99.8 4.8E-16 1E-20 143.1 39.0 330 2-347 65-466 (765)
20 KOG4626 O-linked N-acetylgluco 99.8 1E-17 2.3E-22 140.2 23.2 305 20-341 115-455 (966)
21 PF13429 TPR_15: Tetratricopep 99.8 1.3E-18 2.9E-23 141.8 12.9 262 26-301 13-276 (280)
22 PRK14574 hmsH outer membrane p 99.8 3.4E-14 7.5E-19 129.2 40.2 334 2-348 50-490 (822)
23 KOG4422 Uncharacterized conser 99.8 3.8E-15 8.3E-20 119.8 29.0 294 19-317 205-567 (625)
24 PRK10747 putative protoheme IX 99.8 1.5E-14 3.2E-19 123.4 32.8 274 34-328 97-381 (398)
25 PRK14574 hmsH outer membrane p 99.8 6.2E-14 1.3E-18 127.6 38.0 313 2-327 118-503 (822)
26 COG2956 Predicted N-acetylgluc 99.8 1.5E-14 3.3E-19 112.2 28.7 289 34-335 48-347 (389)
27 PRK10747 putative protoheme IX 99.7 3.4E-14 7.4E-19 121.2 31.9 281 2-302 100-390 (398)
28 TIGR00540 hemY_coli hemY prote 99.7 3.1E-14 6.7E-19 122.1 31.4 287 24-327 85-389 (409)
29 PRK09782 bacteriophage N4 rece 99.7 1.5E-13 3.3E-18 127.5 37.9 320 4-341 360-710 (987)
30 PRK09782 bacteriophage N4 rece 99.7 5.1E-14 1.1E-18 130.7 34.3 283 20-323 476-759 (987)
31 TIGR00540 hemY_coli hemY prote 99.7 5.3E-14 1.1E-18 120.7 32.0 283 1-301 99-398 (409)
32 PF13429 TPR_15: Tetratricopep 99.7 1.2E-16 2.7E-21 130.2 13.6 251 2-260 24-276 (280)
33 COG2956 Predicted N-acetylgluc 99.7 2.3E-13 5E-18 105.7 29.1 285 2-303 51-348 (389)
34 KOG1126 DNA-binding cell divis 99.7 1.3E-14 2.9E-19 122.8 24.1 289 36-341 334-624 (638)
35 KOG1126 DNA-binding cell divis 99.7 1E-14 2.2E-19 123.5 22.4 286 3-307 336-625 (638)
36 COG3071 HemY Uncharacterized e 99.7 6.7E-13 1.5E-17 106.1 30.7 290 27-333 88-388 (400)
37 KOG4422 Uncharacterized conser 99.7 5.6E-13 1.2E-17 107.5 29.6 308 3-321 132-481 (625)
38 COG3071 HemY Uncharacterized e 99.7 2.4E-12 5.3E-17 103.0 31.6 287 1-304 99-392 (400)
39 KOG2076 RNA polymerase III tra 99.7 1.4E-12 2.9E-17 114.3 31.6 316 1-328 154-503 (895)
40 KOG1155 Anaphase-promoting com 99.6 3.2E-12 7E-17 104.1 29.9 289 3-302 244-536 (559)
41 KOG1155 Anaphase-promoting com 99.6 3.9E-12 8.5E-17 103.6 29.1 307 30-351 236-550 (559)
42 PRK12370 invasion protein regu 99.6 1.4E-12 2.9E-17 116.2 27.2 233 19-261 254-502 (553)
43 PRK12370 invasion protein regu 99.6 7.2E-12 1.5E-16 111.7 30.5 265 54-335 254-535 (553)
44 KOG2002 TPR-containing nuclear 99.6 2.2E-12 4.8E-17 113.9 26.4 295 12-316 443-759 (1018)
45 TIGR02521 type_IV_pilW type IV 99.6 4E-12 8.7E-17 101.0 25.8 202 55-261 30-232 (234)
46 TIGR02521 type_IV_pilW type IV 99.6 9.3E-12 2E-16 98.9 26.7 204 89-302 28-232 (234)
47 KOG1173 Anaphase-promoting com 99.5 3.2E-11 7E-16 100.8 27.6 293 53-352 241-533 (611)
48 KOG2003 TPR repeat-containing 99.5 1.3E-11 2.8E-16 100.7 24.3 279 30-323 428-709 (840)
49 KOG1129 TPR repeat-containing 99.5 2.1E-12 4.7E-17 100.7 19.0 232 60-304 227-460 (478)
50 KOG2076 RNA polymerase III tra 99.5 1.3E-10 2.7E-15 102.3 31.7 307 28-342 146-483 (895)
51 KOG0495 HAT repeat protein [RN 99.5 6.6E-10 1.4E-14 94.8 34.9 319 3-331 533-876 (913)
52 KOG0547 Translocase of outer m 99.5 5.5E-11 1.2E-15 97.8 27.3 317 2-328 131-557 (606)
53 KOG4318 Bicoid mRNA stability 99.5 1.6E-12 3.4E-17 113.7 19.2 274 7-323 11-286 (1088)
54 KOG2002 TPR-containing nuclear 99.5 4.8E-10 1E-14 99.5 33.8 305 3-323 253-579 (1018)
55 KOG4318 Bicoid mRNA stability 99.5 1.3E-11 2.9E-16 108.1 22.4 265 42-347 11-277 (1088)
56 KOG1129 TPR repeat-containing 99.5 7.1E-12 1.5E-16 97.8 18.3 236 91-341 222-462 (478)
57 PF13041 PPR_2: PPR repeat fam 99.5 6.2E-14 1.3E-18 81.2 4.6 50 19-68 1-50 (50)
58 KOG1840 Kinesin light chain [C 99.5 8.7E-11 1.9E-15 100.5 25.3 244 57-301 200-478 (508)
59 PF13041 PPR_2: PPR repeat fam 99.5 2.2E-13 4.7E-18 78.9 6.5 50 195-244 1-50 (50)
60 KOG2003 TPR repeat-containing 99.5 3.3E-10 7.1E-15 92.7 26.7 240 100-352 427-705 (840)
61 KOG1173 Anaphase-promoting com 99.5 3.5E-10 7.5E-15 94.8 27.4 281 20-314 243-529 (611)
62 KOG0495 HAT repeat protein [RN 99.5 2.5E-09 5.5E-14 91.3 32.8 305 2-323 422-768 (913)
63 KOG1915 Cell cycle control pro 99.4 3.9E-09 8.4E-14 86.9 31.3 116 2-121 157-273 (677)
64 PRK11189 lipoprotein NlpI; Pro 99.4 7.2E-10 1.6E-14 90.8 27.1 233 70-313 40-275 (296)
65 KOG1840 Kinesin light chain [C 99.4 3.3E-10 7.2E-15 97.0 25.3 241 21-261 199-479 (508)
66 PF12569 NARP1: NMDA receptor- 99.4 1.3E-09 2.8E-14 94.5 29.1 284 28-328 11-325 (517)
67 PF12569 NARP1: NMDA receptor- 99.4 1.1E-09 2.3E-14 95.0 28.3 289 2-301 20-333 (517)
68 COG3063 PilF Tfp pilus assembl 99.4 1.9E-09 4E-14 80.5 24.1 200 58-262 37-237 (250)
69 COG3063 PilF Tfp pilus assembl 99.4 2.3E-09 5E-14 80.1 22.8 183 130-323 38-222 (250)
70 PRK11189 lipoprotein NlpI; Pro 99.3 3.5E-09 7.5E-14 86.8 25.7 95 59-156 67-161 (296)
71 KOG1174 Anaphase-promoting com 99.3 6.5E-09 1.4E-13 84.1 25.0 310 14-339 187-502 (564)
72 KOG1174 Anaphase-promoting com 99.3 2.8E-08 6.2E-13 80.6 28.6 279 17-313 228-510 (564)
73 cd05804 StaR_like StaR_like; a 99.3 1E-07 2.2E-12 81.0 33.0 300 21-328 6-327 (355)
74 KOG0547 Translocase of outer m 99.3 3.8E-09 8.3E-14 87.2 21.1 226 29-261 334-566 (606)
75 cd05804 StaR_like StaR_like; a 99.2 1.1E-07 2.4E-12 80.7 30.6 270 28-302 50-336 (355)
76 PF04733 Coatomer_E: Coatomer 99.2 1.1E-09 2.5E-14 88.4 15.5 251 31-304 11-267 (290)
77 KOG4162 Predicted calmodulin-b 99.2 2.6E-07 5.5E-12 80.8 30.1 120 199-328 652-774 (799)
78 KOG1915 Cell cycle control pro 99.2 1.2E-06 2.6E-11 72.7 33.5 328 2-346 89-442 (677)
79 PF04733 Coatomer_E: Coatomer 99.2 3.7E-09 8E-14 85.5 17.3 241 64-327 9-254 (290)
80 KOG1156 N-terminal acetyltrans 99.2 7.9E-07 1.7E-11 76.4 31.5 184 3-192 58-249 (700)
81 KOG0624 dsRNA-activated protei 99.2 4.7E-07 1E-11 72.0 27.5 311 20-343 37-376 (504)
82 KOG1125 TPR repeat-containing 99.2 2.3E-08 5.1E-13 84.3 21.3 256 29-295 293-564 (579)
83 PLN02789 farnesyltranstransfer 99.1 5.4E-07 1.2E-11 74.0 27.9 203 70-285 51-267 (320)
84 PLN02789 farnesyltranstransfer 99.1 3.1E-07 6.8E-12 75.4 26.5 215 23-245 39-268 (320)
85 KOG1125 TPR repeat-containing 99.1 2.7E-08 5.8E-13 84.0 19.9 245 66-324 295-558 (579)
86 KOG1070 rRNA processing protei 99.1 2E-07 4.3E-12 86.4 26.8 239 9-254 1447-1693(1710)
87 KOG1156 N-terminal acetyltrans 99.0 6.2E-06 1.3E-10 71.1 31.4 306 22-335 42-434 (700)
88 KOG2376 Signal recognition par 99.0 7.3E-06 1.6E-10 69.9 30.8 120 202-328 381-513 (652)
89 KOG1070 rRNA processing protei 99.0 1.2E-06 2.6E-11 81.5 28.1 232 55-298 1457-1696(1710)
90 KOG3785 Uncharacterized conser 99.0 8.9E-08 1.9E-12 76.3 18.3 285 2-311 167-497 (557)
91 KOG4162 Predicted calmodulin-b 99.0 1.1E-06 2.3E-11 77.1 25.6 287 3-304 461-785 (799)
92 TIGR03302 OM_YfiO outer membra 99.0 3.3E-07 7.2E-12 72.9 21.4 187 55-262 32-233 (235)
93 KOG4340 Uncharacterized conser 99.0 2.7E-07 5.8E-12 71.9 19.6 287 23-323 12-325 (459)
94 PRK14720 transcript cleavage f 99.0 5.6E-07 1.2E-11 82.4 24.4 246 55-340 30-289 (906)
95 TIGR03302 OM_YfiO outer membra 99.0 3.5E-07 7.6E-12 72.8 20.5 192 89-303 30-233 (235)
96 KOG2047 mRNA splicing factor [ 99.0 7.9E-06 1.7E-10 70.5 28.8 289 22-323 388-709 (835)
97 PRK10370 formate-dependent nit 98.9 6E-07 1.3E-11 68.7 19.6 124 175-309 52-179 (198)
98 PF12854 PPR_1: PPR repeat 98.9 9.6E-10 2.1E-14 57.2 2.7 32 16-47 2-33 (34)
99 PRK15179 Vi polysaccharide bio 98.9 2.2E-06 4.7E-11 77.7 25.6 183 52-245 82-268 (694)
100 KOG1128 Uncharacterized conser 98.9 4.9E-07 1.1E-11 78.7 20.0 216 25-262 402-617 (777)
101 KOG4340 Uncharacterized conser 98.9 7.5E-07 1.6E-11 69.5 18.9 279 1-298 25-335 (459)
102 PRK10370 formate-dependent nit 98.9 1.3E-06 2.9E-11 66.8 20.1 120 140-262 52-174 (198)
103 KOG0548 Molecular co-chaperone 98.9 1.7E-05 3.8E-10 67.0 27.8 311 2-328 18-446 (539)
104 PRK14720 transcript cleavage f 98.9 4.9E-06 1.1E-10 76.4 26.4 222 16-284 25-268 (906)
105 PRK15179 Vi polysaccharide bio 98.9 3.8E-06 8.2E-11 76.2 25.6 147 124-280 83-229 (694)
106 PF12854 PPR_1: PPR repeat 98.9 3.6E-09 7.7E-14 55.0 3.9 31 193-223 3-33 (34)
107 KOG1128 Uncharacterized conser 98.9 4.3E-06 9.2E-11 73.1 24.2 232 60-319 402-634 (777)
108 KOG1914 mRNA cleavage and poly 98.9 2.6E-05 5.7E-10 66.1 27.8 121 198-326 367-490 (656)
109 KOG0548 Molecular co-chaperone 98.9 1.1E-05 2.5E-10 68.0 25.6 307 29-344 10-428 (539)
110 COG5010 TadD Flp pilus assembl 98.8 1.9E-06 4E-11 66.2 18.9 158 131-298 70-227 (257)
111 KOG3785 Uncharacterized conser 98.8 1.9E-05 4E-10 63.5 24.9 77 3-80 39-115 (557)
112 COG5010 TadD Flp pilus assembl 98.8 3.4E-06 7.4E-11 64.8 20.1 164 89-257 64-227 (257)
113 PRK04841 transcriptional regul 98.8 2.8E-05 6.1E-10 74.8 31.6 298 25-326 413-749 (903)
114 KOG2047 mRNA splicing factor [ 98.8 5.9E-05 1.3E-09 65.3 29.3 308 22-341 103-457 (835)
115 PRK04841 transcriptional regul 98.8 2.3E-05 5E-10 75.3 30.2 275 28-304 459-762 (903)
116 KOG3081 Vesicle coat complex C 98.8 2.4E-05 5.3E-10 60.3 23.4 251 30-304 17-273 (299)
117 PRK15359 type III secretion sy 98.8 8.3E-07 1.8E-11 64.3 14.9 109 42-157 14-122 (144)
118 KOG3081 Vesicle coat complex C 98.8 1.8E-05 3.8E-10 61.0 22.2 241 64-328 16-261 (299)
119 KOG3060 Uncharacterized conser 98.8 1.6E-05 3.4E-10 60.8 21.5 188 34-226 25-220 (289)
120 PRK15359 type III secretion sy 98.7 8.1E-07 1.7E-11 64.4 14.2 110 200-318 27-136 (144)
121 KOG2376 Signal recognition par 98.7 7.8E-05 1.7E-09 63.9 27.0 183 2-192 28-254 (652)
122 KOG3060 Uncharacterized conser 98.7 2.7E-05 5.8E-10 59.6 21.6 203 104-318 24-235 (289)
123 KOG0624 dsRNA-activated protei 98.7 0.00012 2.5E-09 58.8 28.9 288 4-312 56-379 (504)
124 KOG0985 Vesicle coat protein c 98.6 5.7E-05 1.2E-09 68.8 24.9 82 94-183 1106-1187(1666)
125 COG4783 Putative Zn-dependent 98.6 7.8E-05 1.7E-09 62.6 24.0 156 102-282 316-471 (484)
126 TIGR02552 LcrH_SycD type III s 98.6 4.4E-06 9.5E-11 60.1 14.5 97 164-262 19-115 (135)
127 TIGR02552 LcrH_SycD type III s 98.6 6.4E-06 1.4E-10 59.2 14.8 95 94-190 19-113 (135)
128 KOG0985 Vesicle coat protein c 98.6 0.00017 3.7E-09 65.9 25.4 268 22-333 1105-1379(1666)
129 COG4783 Putative Zn-dependent 98.6 0.00011 2.5E-09 61.6 22.7 119 173-301 317-436 (484)
130 KOG1127 TPR repeat-containing 98.5 4E-05 8.8E-10 69.6 20.6 130 22-153 493-622 (1238)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.4E-05 3.1E-10 67.2 16.3 123 60-189 173-295 (395)
132 TIGR00756 PPR pentatricopeptid 98.5 2.1E-07 4.6E-12 49.1 3.7 34 23-56 2-35 (35)
133 KOG2053 Mitochondrial inherita 98.5 0.00067 1.5E-08 61.3 26.8 223 32-262 20-256 (932)
134 KOG3617 WD40 and TPR repeat-co 98.5 0.00025 5.5E-09 63.5 23.9 159 1-188 815-993 (1416)
135 KOG2053 Mitochondrial inherita 98.5 0.001 2.2E-08 60.2 30.2 219 2-228 25-257 (932)
136 PF09976 TPR_21: Tetratricopep 98.5 4.2E-05 9.1E-10 55.6 16.3 22 135-156 56-77 (145)
137 PF09976 TPR_21: Tetratricopep 98.5 2E-05 4.4E-10 57.3 14.6 87 204-298 55-143 (145)
138 PF13812 PPR_3: Pentatricopept 98.5 2.8E-07 6.2E-12 48.3 3.6 33 22-54 2-34 (34)
139 KOG3616 Selective LIM binding 98.4 5.4E-05 1.2E-09 66.8 19.1 109 134-255 739-847 (1636)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.2E-05 2.7E-10 67.6 14.7 126 164-302 171-297 (395)
141 KOG1127 TPR repeat-containing 98.4 5.7E-05 1.2E-09 68.6 19.0 147 4-154 510-657 (1238)
142 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.7E-05 3.8E-10 55.5 13.3 107 199-310 4-112 (119)
143 TIGR00756 PPR pentatricopeptid 98.4 5.7E-07 1.2E-11 47.4 4.1 33 199-231 2-34 (35)
144 PF10037 MRP-S27: Mitochondria 98.4 9.1E-06 2E-10 68.7 12.7 133 43-175 50-186 (429)
145 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.3E-11 46.0 4.3 33 198-230 2-34 (34)
146 KOG3616 Selective LIM binding 98.3 0.00012 2.6E-09 64.6 18.3 164 68-257 744-907 (1636)
147 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00012 2.5E-09 51.2 14.2 21 133-153 45-65 (119)
148 cd00189 TPR Tetratricopeptide 98.2 3.8E-05 8.2E-10 51.0 11.2 85 65-152 9-93 (100)
149 KOG3617 WD40 and TPR repeat-co 98.2 0.00039 8.5E-09 62.3 19.6 212 20-260 756-995 (1416)
150 PRK10866 outer membrane biogen 98.2 0.0014 3.1E-08 52.0 21.4 180 98-300 38-239 (243)
151 PF10037 MRP-S27: Mitochondria 98.2 3.6E-05 7.8E-10 65.1 12.8 123 88-210 62-186 (429)
152 PF08579 RPM2: Mitochondrial r 98.2 1.8E-05 4E-10 52.5 8.6 79 25-104 29-116 (120)
153 cd00189 TPR Tetratricopeptide 98.2 3.8E-05 8.2E-10 51.0 10.0 96 23-121 2-97 (100)
154 KOG1914 mRNA cleavage and poly 98.2 0.0038 8.3E-08 53.5 24.3 208 108-323 309-525 (656)
155 PF08579 RPM2: Mitochondrial r 98.1 5.5E-05 1.2E-09 50.3 9.7 41 134-174 32-73 (120)
156 PF14938 SNAP: Soluble NSF att 98.1 0.00073 1.6E-08 55.2 18.7 129 164-297 116-258 (282)
157 PF01535 PPR: PPR repeat; Int 98.1 2.7E-06 5.8E-11 43.3 2.8 29 23-51 2-30 (31)
158 PF12895 Apc3: Anaphase-promot 98.1 1.3E-05 2.8E-10 52.1 6.3 17 204-220 65-81 (84)
159 PRK02603 photosystem I assembl 98.1 0.00038 8.2E-09 52.3 14.9 113 199-323 37-166 (172)
160 PRK02603 photosystem I assembl 98.1 0.00085 1.8E-08 50.4 16.6 82 130-212 38-121 (172)
161 PF12895 Apc3: Anaphase-promot 98.1 1.9E-05 4.1E-10 51.3 6.7 80 70-151 3-82 (84)
162 PLN03088 SGT1, suppressor of 98.1 0.00022 4.8E-09 60.2 14.7 90 135-226 10-99 (356)
163 PLN03088 SGT1, suppressor of 98.0 0.00011 2.4E-09 62.0 12.5 96 205-313 10-109 (356)
164 PF01535 PPR: PPR repeat; Int 98.0 6.3E-06 1.4E-10 41.9 3.3 28 199-226 2-29 (31)
165 PF05843 Suf: Suppressor of fo 98.0 0.00029 6.2E-09 57.4 14.3 145 128-283 2-150 (280)
166 PRK10866 outer membrane biogen 98.0 0.0031 6.8E-08 50.1 19.6 181 59-260 35-240 (243)
167 PF05843 Suf: Suppressor of fo 98.0 0.00045 9.8E-09 56.2 14.8 145 93-242 2-150 (280)
168 PF14938 SNAP: Soluble NSF att 98.0 0.00057 1.2E-08 55.8 15.5 128 133-261 120-266 (282)
169 PF06239 ECSIT: Evolutionarily 98.0 0.00019 4.2E-09 54.0 11.0 87 161-247 46-153 (228)
170 PRK15363 pathogenicity island 98.0 0.00046 1E-08 49.6 12.4 93 167-261 40-132 (157)
171 CHL00033 ycf3 photosystem I as 98.0 0.00034 7.4E-09 52.3 12.6 60 131-190 39-100 (168)
172 CHL00033 ycf3 photosystem I as 98.0 0.00022 4.8E-09 53.4 11.5 96 56-152 35-138 (168)
173 KOG0553 TPR repeat-containing 97.9 0.0002 4.4E-09 56.4 11.2 125 170-304 89-217 (304)
174 PRK15363 pathogenicity island 97.9 0.00034 7.4E-09 50.2 11.2 92 61-155 40-131 (157)
175 PRK10153 DNA-binding transcrip 97.9 0.0018 3.9E-08 57.3 17.9 138 158-304 333-484 (517)
176 PRK10153 DNA-binding transcrip 97.9 0.0017 3.7E-08 57.5 17.4 138 122-262 332-483 (517)
177 PF13525 YfiO: Outer membrane 97.9 0.0063 1.4E-07 47.0 20.4 183 98-293 11-198 (203)
178 PF06239 ECSIT: Evolutionarily 97.9 0.00079 1.7E-08 50.9 12.9 105 89-212 44-153 (228)
179 KOG0553 TPR repeat-containing 97.9 0.00018 4E-09 56.7 9.7 101 241-350 90-191 (304)
180 PF12688 TPR_5: Tetratrico pep 97.8 0.0021 4.5E-08 44.5 13.3 88 65-153 10-101 (120)
181 KOG0550 Molecular chaperone (D 97.8 0.0031 6.7E-08 52.2 16.1 82 243-328 260-341 (486)
182 PF13414 TPR_11: TPR repeat; P 97.8 0.00017 3.8E-09 44.7 7.3 66 231-304 2-69 (69)
183 PF13432 TPR_16: Tetratricopep 97.8 0.00018 3.9E-09 44.0 7.1 59 238-304 3-62 (65)
184 PF12688 TPR_5: Tetratrico pep 97.8 0.0028 6E-08 43.9 13.5 57 205-261 9-67 (120)
185 PF14559 TPR_19: Tetratricopep 97.8 0.00012 2.6E-09 45.3 6.0 61 243-312 2-63 (68)
186 COG4235 Cytochrome c biogenesi 97.8 0.0038 8.3E-08 49.7 15.4 106 154-262 149-257 (287)
187 KOG2796 Uncharacterized conser 97.7 0.006 1.3E-07 47.5 15.7 57 98-154 183-239 (366)
188 PF14559 TPR_19: Tetratricopep 97.7 0.00016 3.4E-09 44.8 6.3 53 209-262 3-55 (68)
189 PF13432 TPR_16: Tetratricopep 97.7 0.0003 6.5E-09 43.0 7.3 53 101-154 6-58 (65)
190 PF13414 TPR_11: TPR repeat; P 97.7 0.00038 8.3E-09 43.1 7.8 57 95-152 6-63 (69)
191 PF12921 ATP13: Mitochondrial 97.7 0.001 2.3E-08 46.5 10.4 91 233-323 3-103 (126)
192 COG4235 Cytochrome c biogenesi 97.7 0.0076 1.6E-07 48.1 15.9 123 113-240 143-268 (287)
193 KOG2796 Uncharacterized conser 97.7 0.016 3.4E-07 45.3 16.9 133 129-262 179-316 (366)
194 PRK10803 tol-pal system protei 97.6 0.0022 4.8E-08 51.4 12.1 102 197-304 143-248 (263)
195 PF03704 BTAD: Bacterial trans 97.6 0.0045 9.8E-08 45.0 13.0 68 96-164 66-138 (146)
196 KOG1130 Predicted G-alpha GTPa 97.6 0.0011 2.3E-08 54.9 10.3 271 29-301 25-343 (639)
197 PF13525 YfiO: Outer membrane 97.5 0.025 5.3E-07 43.8 18.6 182 129-325 7-195 (203)
198 PRK10803 tol-pal system protei 97.5 0.0057 1.2E-07 49.1 13.6 98 129-226 145-246 (263)
199 KOG2041 WD40 repeat protein [G 97.4 0.034 7.4E-07 49.6 17.8 234 19-301 690-951 (1189)
200 PF13281 DUF4071: Domain of un 97.4 0.059 1.3E-06 45.2 19.1 169 131-304 145-336 (374)
201 PF04840 Vps16_C: Vps16, C-ter 97.4 0.055 1.2E-06 44.8 26.9 100 201-326 181-280 (319)
202 COG4700 Uncharacterized protei 97.4 0.03 6.5E-07 41.4 18.8 134 158-299 85-219 (251)
203 PF13371 TPR_9: Tetratricopept 97.3 0.0028 6.1E-08 39.7 7.8 57 205-262 3-59 (73)
204 COG3898 Uncharacterized membra 97.3 0.081 1.7E-06 44.0 27.7 277 24-321 85-375 (531)
205 PF13371 TPR_9: Tetratricopept 97.3 0.0022 4.7E-08 40.2 7.1 53 102-155 5-57 (73)
206 PF13424 TPR_12: Tetratricopep 97.2 0.00082 1.8E-08 42.8 5.0 68 233-301 6-74 (78)
207 COG4700 Uncharacterized protei 97.2 0.05 1.1E-06 40.3 19.0 103 89-191 86-189 (251)
208 KOG0550 Molecular chaperone (D 97.2 0.11 2.3E-06 43.6 20.3 262 30-303 58-351 (486)
209 PF04840 Vps16_C: Vps16, C-ter 97.2 0.1 2.2E-06 43.3 22.8 110 163-298 178-287 (319)
210 PF13281 DUF4071: Domain of un 97.2 0.12 2.6E-06 43.5 19.8 168 93-262 142-335 (374)
211 PRK15331 chaperone protein Sic 97.1 0.059 1.3E-06 39.3 14.9 91 169-261 44-134 (165)
212 PF03704 BTAD: Bacterial trans 97.1 0.0064 1.4E-07 44.2 9.1 97 32-130 17-139 (146)
213 PF13424 TPR_12: Tetratricopep 96.9 0.0057 1.2E-07 38.9 6.5 60 59-118 8-72 (78)
214 PF12921 ATP13: Mitochondrial 96.9 0.043 9.2E-07 38.5 11.0 80 92-171 2-97 (126)
215 KOG1130 Predicted G-alpha GTPa 96.8 0.011 2.5E-07 49.1 9.0 262 64-328 25-335 (639)
216 PF13428 TPR_14: Tetratricopep 96.8 0.0047 1E-07 34.1 4.8 42 274-316 2-43 (44)
217 PF10300 DUF3808: Protein of u 96.8 0.18 3.9E-06 44.6 16.8 164 129-301 190-375 (468)
218 PF13170 DUF4003: Protein of u 96.8 0.23 5E-06 40.7 18.5 131 108-240 78-225 (297)
219 KOG1538 Uncharacterized conser 96.8 0.17 3.8E-06 45.0 16.0 263 19-302 554-846 (1081)
220 PRK15331 chaperone protein Sic 96.8 0.13 2.8E-06 37.6 14.3 88 136-225 46-133 (165)
221 COG3898 Uncharacterized membra 96.8 0.27 5.8E-06 41.1 27.9 273 59-348 85-369 (531)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.06 1.3E-06 46.0 12.8 64 162-226 75-141 (453)
223 PF10300 DUF3808: Protein of u 96.7 0.13 2.8E-06 45.5 15.4 180 39-225 175-375 (468)
224 KOG2041 WD40 repeat protein [G 96.7 0.46 1E-05 42.9 19.6 90 126-225 851-951 (1189)
225 KOG2610 Uncharacterized conser 96.6 0.099 2.1E-06 42.6 12.3 151 33-187 115-272 (491)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.15 3.3E-06 43.6 13.9 60 58-120 77-140 (453)
227 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.45 9.7E-06 40.6 19.4 118 197-323 397-517 (660)
228 KOG0543 FKBP-type peptidyl-pro 96.5 0.067 1.4E-06 44.7 11.2 93 233-333 258-353 (397)
229 KOG3941 Intermediate in Toll s 96.5 0.065 1.4E-06 42.5 10.5 36 213-248 139-174 (406)
230 KOG1538 Uncharacterized conser 96.4 0.63 1.4E-05 41.7 17.9 214 25-262 602-847 (1081)
231 PF13512 TPR_18: Tetratricopep 96.3 0.25 5.3E-06 35.2 12.0 70 103-172 21-92 (142)
232 PF07079 DUF1347: Protein of u 96.3 0.63 1.4E-05 39.8 27.7 45 25-69 132-180 (549)
233 KOG2280 Vacuolar assembly/sort 96.2 0.9 2E-05 41.4 20.4 103 199-326 686-788 (829)
234 COG0457 NrfG FOG: TPR repeat [ 96.2 0.41 8.9E-06 37.4 28.5 226 70-304 37-267 (291)
235 COG1729 Uncharacterized protei 96.2 0.16 3.5E-06 40.2 11.6 86 141-226 155-244 (262)
236 KOG0543 FKBP-type peptidyl-pro 96.2 0.26 5.7E-06 41.3 13.0 62 164-226 259-320 (397)
237 KOG4555 TPR repeat-containing 96.1 0.17 3.7E-06 35.1 9.6 94 206-304 52-146 (175)
238 PF13170 DUF4003: Protein of u 96.0 0.53 1.2E-05 38.7 14.3 130 37-168 78-223 (297)
239 PF09205 DUF1955: Domain of un 96.0 0.31 6.7E-06 34.0 15.1 64 198-262 87-150 (161)
240 PRK11906 transcriptional regul 96.0 0.86 1.9E-05 39.3 15.4 81 72-155 320-400 (458)
241 smart00299 CLH Clathrin heavy 96.0 0.38 8.3E-06 34.5 15.4 82 98-187 13-94 (140)
242 KOG1585 Protein required for f 95.9 0.58 1.3E-05 36.6 17.6 205 23-255 33-250 (308)
243 PF13428 TPR_14: Tetratricopep 95.9 0.05 1.1E-06 29.9 5.8 25 97-121 6-30 (44)
244 KOG3941 Intermediate in Toll s 95.9 0.13 2.8E-06 40.9 9.7 89 90-178 65-174 (406)
245 PF04053 Coatomer_WDAD: Coatom 95.9 1 2.2E-05 39.5 16.0 156 65-257 270-427 (443)
246 PF04053 Coatomer_WDAD: Coatom 95.8 0.82 1.8E-05 40.0 15.3 157 30-222 270-427 (443)
247 PRK11906 transcriptional regul 95.8 1.1 2.4E-05 38.7 16.0 157 163-328 252-429 (458)
248 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1.1 2.3E-05 38.5 20.9 147 127-284 397-546 (660)
249 KOG1585 Protein required for f 95.8 0.68 1.5E-05 36.2 13.1 18 170-187 198-215 (308)
250 COG1729 Uncharacterized protei 95.8 0.25 5.4E-06 39.2 10.9 100 58-158 144-246 (262)
251 PF08631 SPO22: Meiosis protei 95.8 0.87 1.9E-05 37.3 25.6 226 31-259 3-273 (278)
252 smart00299 CLH Clathrin heavy 95.8 0.48 1E-05 34.1 15.5 125 60-208 11-136 (140)
253 KOG4555 TPR repeat-containing 95.7 0.45 9.7E-06 33.2 10.6 88 103-192 54-145 (175)
254 COG4649 Uncharacterized protei 95.7 0.59 1.3E-05 34.4 13.8 135 55-191 58-196 (221)
255 PF04184 ST7: ST7 protein; In 95.6 1.3 2.9E-05 38.5 16.3 127 26-155 173-323 (539)
256 PF04184 ST7: ST7 protein; In 95.6 1.4 3E-05 38.4 16.6 98 164-262 261-376 (539)
257 COG4105 ComL DNA uptake lipopr 95.6 0.9 1.9E-05 35.9 20.7 185 102-308 44-237 (254)
258 COG0457 NrfG FOG: TPR repeat [ 95.5 0.89 1.9E-05 35.5 27.7 226 34-262 36-266 (291)
259 KOG2114 Vacuolar assembly/sort 95.5 0.39 8.4E-06 44.2 12.2 174 25-222 338-515 (933)
260 COG3118 Thioredoxin domain-con 95.4 1.1 2.5E-05 36.1 18.5 145 135-288 142-287 (304)
261 COG3629 DnrI DNA-binding trans 95.3 0.38 8.2E-06 38.8 10.5 77 129-206 155-236 (280)
262 PF08631 SPO22: Meiosis protei 95.3 1.3 2.9E-05 36.2 24.3 227 66-300 3-273 (278)
263 KOG1941 Acetylcholine receptor 95.3 0.96 2.1E-05 37.6 12.7 229 32-260 17-274 (518)
264 PF10602 RPN7: 26S proteasome 95.2 0.59 1.3E-05 35.2 10.9 63 93-155 37-101 (177)
265 KOG2610 Uncharacterized conser 95.2 1.5 3.2E-05 36.1 15.4 152 104-258 115-273 (491)
266 COG3118 Thioredoxin domain-con 95.1 1.4 3.1E-05 35.6 18.1 145 168-323 140-287 (304)
267 PF09205 DUF1955: Domain of un 95.0 0.77 1.7E-05 32.1 12.9 139 138-304 13-151 (161)
268 COG1747 Uncharacterized N-term 95.0 2.2 4.8E-05 37.3 21.9 182 19-209 64-251 (711)
269 PF10602 RPN7: 26S proteasome 95.0 0.72 1.6E-05 34.7 10.8 63 128-190 37-101 (177)
270 KOG1550 Extracellular protein 94.9 3 6.4E-05 38.0 19.8 182 72-262 228-427 (552)
271 KOG1941 Acetylcholine receptor 94.8 2 4.4E-05 35.8 13.8 231 68-299 18-272 (518)
272 COG4105 ComL DNA uptake lipopr 94.8 1.6 3.4E-05 34.6 20.5 187 55-262 34-234 (254)
273 PF00637 Clathrin: Region in C 94.8 0.00089 1.9E-08 48.6 -5.1 83 168-257 13-95 (143)
274 KOG1920 IkappaB kinase complex 94.8 1.9 4.2E-05 41.6 14.8 230 72-331 773-1049(1265)
275 COG3629 DnrI DNA-binding trans 94.7 0.57 1.2E-05 37.8 10.1 80 92-172 153-237 (280)
276 PF13512 TPR_18: Tetratricopep 94.7 1.1 2.3E-05 32.1 13.0 73 65-139 19-94 (142)
277 PF07035 Mic1: Colon cancer-as 94.5 1.4 3E-05 32.6 14.4 27 47-73 20-46 (167)
278 KOG2114 Vacuolar assembly/sort 94.5 2.6 5.6E-05 39.2 14.4 214 22-257 284-515 (933)
279 PF13176 TPR_7: Tetratricopept 94.1 0.15 3.2E-06 26.5 4.0 23 130-152 2-24 (36)
280 PF13431 TPR_17: Tetratricopep 94.0 0.091 2E-06 27.0 3.0 24 89-112 10-33 (34)
281 PF02259 FAT: FAT domain; Int 94.0 3.4 7.3E-05 35.1 23.1 124 196-320 145-304 (352)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 94.0 0.54 1.2E-05 30.7 6.9 59 39-99 25-83 (103)
283 KOG1464 COP9 signalosome, subu 94.0 2.6 5.6E-05 33.6 19.8 26 199-224 193-218 (440)
284 PF13176 TPR_7: Tetratricopept 93.9 0.16 3.5E-06 26.4 3.9 26 234-259 1-26 (36)
285 KOG4234 TPR repeat-containing 93.6 2.2 4.7E-05 32.4 10.4 89 207-304 105-199 (271)
286 PF13431 TPR_17: Tetratricopep 93.5 0.13 2.9E-06 26.3 3.1 31 296-327 2-32 (34)
287 cd00923 Cyt_c_Oxidase_Va Cytoc 93.5 0.68 1.5E-05 30.3 6.7 64 247-317 22-85 (103)
288 PF09613 HrpB1_HrpK: Bacterial 93.3 2.3 5E-05 31.1 14.0 51 104-155 22-72 (160)
289 KOG1920 IkappaB kinase complex 93.3 8.6 0.00019 37.5 20.9 128 137-298 918-1051(1265)
290 PF02284 COX5A: Cytochrome c o 93.3 1.6 3.5E-05 28.9 8.7 47 269-316 41-87 (108)
291 PF00515 TPR_1: Tetratricopept 93.2 0.29 6.4E-06 24.8 4.2 30 233-262 2-31 (34)
292 PF13929 mRNA_stabil: mRNA sta 93.1 4 8.7E-05 33.1 16.4 117 106-222 142-263 (292)
293 COG4649 Uncharacterized protei 93.0 2.8 6.1E-05 31.0 13.9 134 92-226 59-196 (221)
294 PF00515 TPR_1: Tetratricopept 92.9 0.35 7.6E-06 24.5 4.2 31 274-304 2-32 (34)
295 PF09613 HrpB1_HrpK: Bacterial 92.8 2.9 6.3E-05 30.6 13.2 17 139-155 22-38 (160)
296 PF07719 TPR_2: Tetratricopept 92.7 0.44 9.5E-06 24.0 4.4 31 274-304 2-32 (34)
297 KOG2280 Vacuolar assembly/sort 92.6 8.6 0.00019 35.5 24.8 79 233-327 685-763 (829)
298 KOG4570 Uncharacterized conser 92.5 2.3 4.9E-05 34.7 9.8 100 161-262 63-165 (418)
299 PF11207 DUF2989: Protein of u 92.4 0.97 2.1E-05 34.3 7.3 82 29-112 115-198 (203)
300 PF00637 Clathrin: Region in C 92.3 0.095 2E-06 37.9 2.0 83 98-187 13-95 (143)
301 KOG4570 Uncharacterized conser 92.2 4.3 9.4E-05 33.2 11.0 105 50-156 58-164 (418)
302 COG4785 NlpI Lipoprotein NlpI, 92.2 4.4 9.6E-05 31.3 15.3 179 70-262 79-267 (297)
303 PF07719 TPR_2: Tetratricopept 92.0 0.52 1.1E-05 23.8 4.2 29 234-262 3-31 (34)
304 COG1747 Uncharacterized N-term 92.0 8.2 0.00018 34.1 26.2 180 126-319 65-250 (711)
305 PF02284 COX5A: Cytochrome c o 91.9 2.5 5.5E-05 28.0 9.5 60 180-240 28-87 (108)
306 PRK15180 Vi polysaccharide bio 91.9 3.3 7.2E-05 36.0 10.6 121 174-304 301-422 (831)
307 PF11207 DUF2989: Protein of u 91.9 2.6 5.7E-05 32.1 9.0 77 213-293 122-198 (203)
308 PF07035 Mic1: Colon cancer-as 91.8 4.1 8.8E-05 30.2 15.8 136 112-261 14-149 (167)
309 PF07079 DUF1347: Protein of u 91.7 8.2 0.00018 33.5 25.3 263 32-304 17-329 (549)
310 KOG2396 HAT (Half-A-TPR) repea 91.1 10 0.00022 33.3 23.0 241 40-301 301-558 (568)
311 COG4455 ImpE Protein of avirul 91.0 3.1 6.7E-05 32.1 8.7 77 164-241 3-81 (273)
312 COG2909 MalT ATP-dependent tra 90.8 15 0.00032 34.8 24.8 230 66-298 425-684 (894)
313 PRK09687 putative lyase; Provi 90.8 8 0.00017 31.7 26.9 218 54-301 35-262 (280)
314 PF13929 mRNA_stabil: mRNA sta 90.7 7.9 0.00017 31.5 16.8 138 70-207 142-288 (292)
315 KOG4648 Uncharacterized conser 90.5 1.1 2.4E-05 36.9 6.3 68 240-323 105-173 (536)
316 COG2976 Uncharacterized protei 90.5 6.3 0.00014 29.9 14.3 88 205-303 97-189 (207)
317 PF13374 TPR_10: Tetratricopep 90.3 0.93 2E-05 24.1 4.4 26 129-154 4-29 (42)
318 PF13374 TPR_10: Tetratricopep 90.2 1.1 2.3E-05 23.9 4.5 29 92-120 2-30 (42)
319 KOG0276 Vesicle coat complex C 90.0 9.6 0.00021 34.4 11.8 148 105-298 599-746 (794)
320 COG4785 NlpI Lipoprotein NlpI, 90.0 7.6 0.00016 30.1 16.6 205 106-323 79-286 (297)
321 KOG1258 mRNA processing protei 89.8 15 0.00032 33.1 30.7 103 210-323 379-490 (577)
322 PF02259 FAT: FAT domain; Int 89.8 11 0.00025 31.8 21.8 66 160-225 144-212 (352)
323 PF07163 Pex26: Pex26 protein; 89.7 6 0.00013 31.9 9.5 87 134-220 90-181 (309)
324 COG4455 ImpE Protein of avirul 89.2 3.6 7.7E-05 31.8 7.7 57 60-118 5-61 (273)
325 KOG4234 TPR repeat-containing 89.0 8.6 0.00019 29.4 9.7 90 136-226 104-197 (271)
326 PRK15180 Vi polysaccharide bio 89.0 15 0.00033 32.2 14.5 120 103-226 300-420 (831)
327 PRK09687 putative lyase; Provi 88.8 12 0.00026 30.7 29.3 234 19-284 35-278 (280)
328 KOG2063 Vacuolar assembly/sort 88.5 24 0.00052 33.9 15.5 193 129-321 506-745 (877)
329 PF13181 TPR_8: Tetratricopept 88.5 1.2 2.5E-05 22.5 3.6 31 274-304 2-32 (34)
330 COG3947 Response regulator con 88.0 13 0.00028 30.3 15.3 71 275-346 281-358 (361)
331 cd08819 CARD_MDA5_2 Caspase ac 88.0 3.5 7.7E-05 26.5 6.0 65 40-111 21-85 (88)
332 KOG4507 Uncharacterized conser 87.8 5.9 0.00013 35.5 9.2 151 54-208 569-721 (886)
333 PF13174 TPR_6: Tetratricopept 87.8 1 2.2E-05 22.4 3.1 26 237-262 5-30 (33)
334 PF10345 Cohesin_load: Cohesin 87.5 24 0.00052 32.8 30.2 187 2-189 37-252 (608)
335 KOG4077 Cytochrome c oxidase, 87.5 4.3 9.4E-05 28.2 6.5 45 75-120 68-112 (149)
336 TIGR02561 HrpB1_HrpK type III 87.3 9 0.0002 27.7 11.4 50 175-226 23-73 (153)
337 PF13174 TPR_6: Tetratricopept 87.3 1.2 2.6E-05 22.1 3.2 29 276-304 3-31 (33)
338 PF07163 Pex26: Pex26 protein; 87.3 13 0.00029 30.0 10.0 121 29-150 43-181 (309)
339 KOG4648 Uncharacterized conser 87.2 5.3 0.00011 33.2 8.1 51 170-221 105-155 (536)
340 PF06552 TOM20_plant: Plant sp 86.6 3.2 6.9E-05 31.0 6.0 22 2-24 7-28 (186)
341 PF13181 TPR_8: Tetratricopept 86.5 2.8 6.1E-05 21.0 4.5 27 94-120 3-29 (34)
342 TIGR03504 FimV_Cterm FimV C-te 86.5 2.2 4.8E-05 23.4 4.0 22 98-119 5-26 (44)
343 TIGR02561 HrpB1_HrpK type III 86.1 11 0.00023 27.3 10.7 72 244-323 22-93 (153)
344 KOG0276 Vesicle coat complex C 85.7 24 0.00053 32.0 11.7 130 95-257 617-746 (794)
345 TIGR03504 FimV_Cterm FimV C-te 85.2 2.8 6.1E-05 23.0 4.0 25 62-86 5-29 (44)
346 KOG1550 Extracellular protein 85.1 31 0.00066 31.7 25.8 179 3-192 229-427 (552)
347 KOG4077 Cytochrome c oxidase, 84.7 7.5 0.00016 27.1 6.6 59 251-316 68-126 (149)
348 PF07721 TPR_4: Tetratricopept 84.4 2 4.3E-05 20.3 2.9 17 204-220 8-24 (26)
349 PF13762 MNE1: Mitochondrial s 84.2 13 0.00029 26.8 9.3 81 60-140 43-128 (145)
350 PHA02875 ankyrin repeat protei 84.2 22 0.00047 31.1 11.4 69 7-79 16-88 (413)
351 COG2909 MalT ATP-dependent tra 83.7 42 0.00091 32.1 23.0 89 137-225 425-525 (894)
352 COG5159 RPN6 26S proteasome re 82.9 24 0.00052 28.7 10.8 54 168-221 9-69 (421)
353 PF06552 TOM20_plant: Plant sp 82.7 18 0.00039 27.2 10.0 76 109-193 52-138 (186)
354 KOG0403 Neoplastic transformat 82.1 34 0.00073 29.9 13.9 63 235-304 512-574 (645)
355 PHA02875 ankyrin repeat protei 81.7 35 0.00076 29.8 15.9 77 31-116 9-89 (413)
356 KOG2471 TPR repeat-containing 81.0 40 0.00086 29.9 13.8 118 205-323 248-384 (696)
357 COG5159 RPN6 26S proteasome re 80.2 31 0.00067 28.2 11.2 54 98-151 9-69 (421)
358 PF10579 Rapsyn_N: Rapsyn N-te 80.0 8.2 0.00018 24.3 5.0 18 131-148 47-64 (80)
359 COG0735 Fur Fe2+/Zn2+ uptake r 79.6 16 0.00035 26.4 7.4 60 116-176 10-69 (145)
360 PRK10941 hypothetical protein; 79.3 33 0.00071 28.0 10.2 76 235-318 184-261 (269)
361 PF10579 Rapsyn_N: Rapsyn N-te 78.6 9.8 0.00021 24.0 5.1 45 139-183 18-64 (80)
362 PRK13342 recombination factor 78.5 46 0.001 29.2 17.3 15 69-83 187-201 (413)
363 smart00028 TPR Tetratricopepti 78.4 4.8 0.0001 18.9 3.4 30 275-304 3-32 (34)
364 cd00280 TRFH Telomeric Repeat 78.1 21 0.00044 27.0 7.4 67 213-288 85-158 (200)
365 KOG1258 mRNA processing protei 78.1 54 0.0012 29.8 27.7 101 196-303 296-396 (577)
366 TIGR02508 type_III_yscG type I 77.5 18 0.0004 24.1 7.8 50 171-226 48-97 (115)
367 PF07575 Nucleopor_Nup85: Nup8 77.1 48 0.001 30.6 11.3 76 112-189 390-465 (566)
368 COG3947 Response regulator con 76.9 40 0.00087 27.7 16.8 60 129-189 281-340 (361)
369 smart00386 HAT HAT (Half-A-TPR 76.8 6 0.00013 19.2 3.4 30 287-317 1-30 (33)
370 PF14689 SPOB_a: Sensor_kinase 76.8 12 0.00026 22.4 5.0 47 247-301 5-51 (62)
371 KOG4567 GTPase-activating prot 75.7 41 0.00089 27.8 9.0 71 41-117 263-343 (370)
372 PF11838 ERAP1_C: ERAP1-like C 75.7 47 0.001 27.8 16.6 139 98-244 135-287 (324)
373 PF11846 DUF3366: Domain of un 75.4 20 0.00043 27.4 7.3 33 124-156 141-173 (193)
374 PF13762 MNE1: Mitochondrial s 74.8 29 0.00063 25.1 10.9 81 95-175 42-128 (145)
375 PF14689 SPOB_a: Sensor_kinase 74.8 13 0.00028 22.3 4.8 21 98-118 29-49 (62)
376 KOG2396 HAT (Half-A-TPR) repea 74.8 62 0.0013 28.8 21.2 240 7-261 303-559 (568)
377 COG0735 Fur Fe2+/Zn2+ uptake r 74.7 30 0.00064 25.1 7.7 62 8-70 8-69 (145)
378 PF08424 NRDE-2: NRDE-2, neces 74.7 51 0.0011 27.8 16.8 116 146-263 50-185 (321)
379 KOG4642 Chaperone-dependent E3 74.2 43 0.00092 26.7 11.3 117 31-152 20-142 (284)
380 COG2976 Uncharacterized protei 73.6 38 0.00083 25.9 15.1 128 128-262 55-189 (207)
381 PF11848 DUF3368: Domain of un 73.4 12 0.00025 21.0 4.1 32 33-64 14-45 (48)
382 PF10345 Cohesin_load: Cohesin 72.8 83 0.0018 29.4 20.9 202 89-301 27-253 (608)
383 PF08424 NRDE-2: NRDE-2, neces 72.3 58 0.0013 27.4 15.9 26 203-228 160-185 (321)
384 PF11663 Toxin_YhaV: Toxin wit 71.7 4.9 0.00011 28.3 2.8 30 105-136 108-137 (140)
385 PF09454 Vps23_core: Vps23 cor 71.6 8.4 0.00018 23.3 3.5 53 269-322 4-56 (65)
386 KOG4507 Uncharacterized conser 70.5 28 0.00061 31.6 7.6 102 210-319 620-721 (886)
387 PF11846 DUF3366: Domain of un 70.1 40 0.00086 25.8 7.9 31 160-190 142-172 (193)
388 KOG3807 Predicted membrane pro 69.4 37 0.0008 28.3 7.6 21 98-118 281-301 (556)
389 KOG2582 COP9 signalosome, subu 69.3 71 0.0015 27.2 13.8 199 59-262 105-346 (422)
390 KOG0376 Serine-threonine phosp 69.3 9.5 0.00021 33.3 4.6 103 240-351 12-115 (476)
391 KOG2066 Vacuolar assembly/sort 68.8 1.1E+02 0.0023 29.1 18.2 46 22-71 393-438 (846)
392 KOG1464 COP9 signalosome, subu 67.9 65 0.0014 26.2 21.7 181 2-183 43-252 (440)
393 PF11663 Toxin_YhaV: Toxin wit 67.8 6.8 0.00015 27.6 2.8 31 209-241 107-137 (140)
394 KOG2063 Vacuolar assembly/sort 67.7 1.3E+02 0.0027 29.4 18.8 26 24-49 507-532 (877)
395 PF12862 Apc5: Anaphase-promot 67.1 33 0.00071 22.5 6.0 21 64-84 49-69 (94)
396 cd08819 CARD_MDA5_2 Caspase ac 67.1 32 0.00068 22.3 7.2 12 212-223 51-62 (88)
397 PF12862 Apc5: Anaphase-promot 66.5 30 0.00066 22.7 5.8 59 243-301 9-69 (94)
398 PF07575 Nucleopor_Nup85: Nup8 64.4 28 0.00061 32.0 7.0 22 97-118 410-431 (566)
399 KOG2422 Uncharacterized conser 64.4 1.2E+02 0.0025 27.8 18.3 155 69-225 251-447 (665)
400 PF10475 DUF2450: Protein of u 64.4 82 0.0018 26.1 10.2 52 98-155 104-155 (291)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 64.3 47 0.001 23.3 8.6 44 250-298 81-124 (126)
402 PF00244 14-3-3: 14-3-3 protei 64.2 73 0.0016 25.4 11.7 49 214-262 143-199 (236)
403 KOG0890 Protein kinase of the 64.1 2.3E+02 0.0049 31.1 22.2 64 232-304 1670-1733(2382)
404 PRK10564 maltose regulon perip 64.1 23 0.00049 29.1 5.5 36 89-124 253-289 (303)
405 PRK10941 hypothetical protein; 63.4 82 0.0018 25.7 11.0 80 199-284 183-262 (269)
406 PF11848 DUF3368: Domain of un 63.3 25 0.00053 19.7 5.1 27 105-131 15-41 (48)
407 PRK10564 maltose regulon perip 62.6 20 0.00044 29.4 5.0 36 130-165 260-295 (303)
408 PRK11639 zinc uptake transcrip 62.4 63 0.0014 24.1 8.6 60 12-72 17-76 (169)
409 TIGR02508 type_III_yscG type I 62.3 45 0.00097 22.4 8.1 51 136-192 48-98 (115)
410 PF10366 Vps39_1: Vacuolar sor 61.2 49 0.0011 22.5 7.4 26 130-155 42-67 (108)
411 PF11817 Foie-gras_1: Foie gra 60.9 49 0.0011 26.6 7.1 64 235-299 181-244 (247)
412 PF10255 Paf67: RNA polymerase 60.5 1E+02 0.0023 26.9 9.1 61 59-119 125-191 (404)
413 cd08326 CARD_CASP9 Caspase act 60.4 43 0.00093 21.6 6.1 37 68-109 42-78 (84)
414 KOG4567 GTPase-activating prot 60.3 77 0.0017 26.3 7.7 71 217-298 263-343 (370)
415 PRK11619 lytic murein transgly 59.6 1.6E+02 0.0034 27.8 24.9 54 89-143 126-179 (644)
416 COG2178 Predicted RNA-binding 59.6 78 0.0017 24.2 7.5 17 139-155 133-149 (204)
417 PF03745 DUF309: Domain of unk 58.7 37 0.00081 20.3 5.2 14 105-118 12-25 (62)
418 PF14853 Fis1_TPR_C: Fis1 C-te 58.2 34 0.00074 19.7 5.3 26 237-262 6-31 (53)
419 PF04762 IKI3: IKI3 family; I 57.7 64 0.0014 31.9 8.3 27 95-121 815-843 (928)
420 PRK11639 zinc uptake transcrip 57.3 79 0.0017 23.6 7.4 58 119-177 18-75 (169)
421 cd00280 TRFH Telomeric Repeat 56.0 88 0.0019 23.8 11.8 20 136-155 120-139 (200)
422 PF09670 Cas_Cas02710: CRISPR- 56.0 1.4E+02 0.003 26.0 11.6 56 135-191 139-198 (379)
423 cd07153 Fur_like Ferric uptake 55.7 48 0.001 22.7 5.5 46 27-72 6-51 (116)
424 KOG4521 Nuclear pore complex, 55.3 2.4E+02 0.0052 28.6 13.1 122 59-184 986-1124(1480)
425 PHA00425 DNA packaging protein 55.2 42 0.0009 21.1 4.3 35 288-323 14-48 (88)
426 COG5108 RPO41 Mitochondrial DN 55.1 1.9E+02 0.004 27.2 11.4 75 167-244 33-115 (1117)
427 PRK09462 fur ferric uptake reg 54.9 79 0.0017 22.9 7.5 60 11-71 7-67 (148)
428 PF11817 Foie-gras_1: Foie gra 54.6 90 0.002 25.1 7.6 59 130-188 181-244 (247)
429 PRK09857 putative transposase; 54.6 1.2E+02 0.0027 25.1 9.9 65 165-230 209-273 (292)
430 COG5187 RPN7 26S proteasome re 54.3 1.2E+02 0.0027 25.0 13.1 114 88-205 111-235 (412)
431 COG5108 RPO41 Mitochondrial DN 54.1 79 0.0017 29.4 7.5 74 278-351 33-113 (1117)
432 KOG2297 Predicted translation 54.0 1.3E+02 0.0028 25.1 20.2 75 207-292 265-340 (412)
433 PF09454 Vps23_core: Vps23 cor 53.0 25 0.00054 21.3 3.2 32 231-262 7-38 (65)
434 KOG1839 Uncharacterized protei 52.9 2.7E+02 0.0058 28.5 11.2 154 170-323 940-1114(1236)
435 KOG1839 Uncharacterized protei 52.5 2.7E+02 0.0059 28.4 11.8 162 136-297 941-1123(1236)
436 PRK14700 recombination factor 52.4 1.4E+02 0.003 24.9 15.8 37 105-141 139-175 (300)
437 KOG0686 COP9 signalosome, subu 52.4 1.6E+02 0.0035 25.7 14.7 93 128-222 151-254 (466)
438 COG0790 FOG: TPR repeat, SEL1 52.3 1.3E+02 0.0029 24.7 22.5 189 34-236 54-276 (292)
439 PF04097 Nic96: Nup93/Nic96; 50.7 2.2E+02 0.0048 26.8 13.7 214 26-255 116-350 (613)
440 PF01475 FUR: Ferric uptake re 50.6 46 0.001 23.0 4.8 47 25-71 11-57 (120)
441 PF09670 Cas_Cas02710: CRISPR- 50.4 1.7E+02 0.0037 25.4 11.7 57 99-156 138-198 (379)
442 cd07153 Fur_like Ferric uptake 50.1 65 0.0014 22.0 5.5 45 279-323 6-50 (116)
443 PF09477 Type_III_YscG: Bacter 48.7 84 0.0018 21.4 9.2 18 209-226 81-98 (116)
444 COG4941 Predicted RNA polymera 48.6 1.7E+02 0.0036 24.8 11.6 117 37-158 272-396 (415)
445 PF07443 HARP: HepA-related pr 48.5 8.7 0.00019 22.3 0.7 30 3-32 9-38 (55)
446 KOG0376 Serine-threonine phosp 48.4 61 0.0013 28.6 5.8 104 28-137 11-115 (476)
447 PF09986 DUF2225: Uncharacteri 48.2 1.3E+02 0.0029 23.5 11.4 69 235-304 121-196 (214)
448 PF14561 TPR_20: Tetratricopep 48.1 76 0.0016 20.7 9.0 26 93-118 23-48 (90)
449 KOG1498 26S proteasome regulat 48.0 1.9E+02 0.004 25.1 16.1 89 201-301 135-240 (439)
450 KOG4814 Uncharacterized conser 47.8 2.4E+02 0.0052 26.4 9.5 85 67-154 365-455 (872)
451 KOG1308 Hsp70-interacting prot 47.4 16 0.00034 30.5 2.2 49 140-189 127-175 (377)
452 COG4976 Predicted methyltransf 47.3 99 0.0021 24.6 6.2 57 241-304 4-60 (287)
453 KOG3677 RNA polymerase I-assoc 47.2 1.2E+02 0.0026 26.4 7.2 92 25-118 205-298 (525)
454 KOG4642 Chaperone-dependent E3 46.9 1.5E+02 0.0033 23.8 11.9 117 66-187 20-142 (284)
455 KOG2034 Vacuolar sorting prote 46.4 2.9E+02 0.0063 26.9 24.8 134 165-323 507-643 (911)
456 KOG2297 Predicted translation 46.4 1.7E+02 0.0038 24.4 16.2 76 238-329 261-342 (412)
457 PF01475 FUR: Ferric uptake re 46.2 66 0.0014 22.2 5.0 47 277-323 11-57 (120)
458 smart00804 TAP_C C-terminal do 46.0 21 0.00046 21.4 2.1 23 70-92 39-61 (63)
459 PF14669 Asp_Glu_race_2: Putat 45.6 1.4E+02 0.003 23.0 13.5 24 167-190 137-160 (233)
460 KOG0551 Hsp90 co-chaperone CNS 45.5 1.7E+02 0.0036 24.8 7.6 21 205-225 89-109 (390)
461 KOG0890 Protein kinase of the 45.3 4.7E+02 0.01 29.0 24.2 58 273-333 1670-1729(2382)
462 KOG3677 RNA polymerase I-assoc 44.9 2.2E+02 0.0047 25.0 8.5 91 61-153 206-298 (525)
463 PRK09462 fur ferric uptake reg 44.7 1.2E+02 0.0026 22.0 7.5 35 142-176 32-66 (148)
464 cd08326 CARD_CASP9 Caspase act 44.7 42 0.00092 21.6 3.5 63 5-75 18-80 (84)
465 PF09868 DUF2095: Uncharacteri 44.4 1E+02 0.0022 21.1 5.4 24 169-192 68-91 (128)
466 KOG2659 LisH motif-containing 44.3 1.6E+02 0.0034 23.3 10.0 98 52-152 22-128 (228)
467 KOG4814 Uncharacterized conser 44.3 1.9E+02 0.0041 27.0 8.2 85 242-328 364-448 (872)
468 KOG1308 Hsp70-interacting prot 43.8 47 0.001 28.0 4.3 117 173-300 125-242 (377)
469 KOG2422 Uncharacterized conser 42.9 2.7E+02 0.0059 25.6 14.5 157 140-300 251-446 (665)
470 PRK09857 putative transposase; 42.7 2E+02 0.0043 23.9 9.0 65 131-196 210-274 (292)
471 KOG0686 COP9 signalosome, subu 42.6 2.3E+02 0.0051 24.7 14.7 179 93-281 151-352 (466)
472 COG0819 TenA Putative transcri 42.4 1.7E+02 0.0037 23.1 8.5 32 117-148 99-130 (218)
473 PF14669 Asp_Glu_race_2: Putat 42.2 1.6E+02 0.0034 22.7 14.9 57 201-257 136-206 (233)
474 KOG1114 Tripeptidyl peptidase 42.1 3.6E+02 0.0078 26.8 15.6 70 248-323 1212-1282(1304)
475 KOG1586 Protein required for f 42.0 1.8E+02 0.0039 23.3 20.7 59 204-262 161-225 (288)
476 COG4259 Uncharacterized protei 41.9 1.1E+02 0.0023 20.6 5.0 50 294-343 58-107 (121)
477 PF03745 DUF309: Domain of unk 41.6 77 0.0017 18.9 5.7 7 215-221 17-23 (62)
478 PF11123 DNA_Packaging_2: DNA 40.7 90 0.0019 19.4 4.5 33 177-210 12-44 (82)
479 PF14561 TPR_20: Tetratricopep 40.3 1E+02 0.0023 20.1 9.6 54 126-179 21-75 (90)
480 PF02847 MA3: MA3 domain; Int 39.8 1.2E+02 0.0026 20.5 7.0 18 135-152 10-27 (113)
481 PF09477 Type_III_YscG: Bacter 39.8 1.2E+02 0.0026 20.7 9.7 14 72-85 22-35 (116)
482 PF05944 Phage_term_smal: Phag 39.4 1.4E+02 0.003 21.3 6.5 31 234-264 50-80 (132)
483 PF10366 Vps39_1: Vacuolar sor 39.1 1.2E+02 0.0027 20.6 8.5 27 275-301 41-67 (108)
484 PF02607 B12-binding_2: B12 bi 38.5 87 0.0019 19.5 4.3 23 34-56 14-36 (79)
485 PF02847 MA3: MA3 domain; Int 38.5 91 0.002 21.1 4.7 22 97-118 7-28 (113)
486 PF02184 HAT: HAT (Half-A-TPR) 38.5 57 0.0012 16.5 3.4 25 247-279 2-26 (32)
487 KOG3364 Membrane protein invol 38.2 1.5E+02 0.0033 21.3 9.3 70 230-304 30-102 (149)
488 smart00777 Mad3_BUB1_I Mad3/BU 36.6 1.5E+02 0.0033 20.9 7.9 41 111-151 82-123 (125)
489 PF11768 DUF3312: Protein of u 36.1 3.4E+02 0.0075 24.8 11.2 63 96-158 412-475 (545)
490 KOG0991 Replication factor C, 35.9 2.3E+02 0.005 22.8 14.8 112 207-322 169-286 (333)
491 COG0790 FOG: TPR repeat, SEL1 35.8 2.5E+02 0.0053 23.1 22.2 181 68-262 53-267 (292)
492 cd08332 CARD_CASP2 Caspase act 35.3 1.3E+02 0.0028 19.7 6.8 33 70-107 48-80 (90)
493 PF09868 DUF2095: Uncharacteri 35.1 1.5E+02 0.0033 20.4 5.2 43 279-322 67-109 (128)
494 PF08870 DUF1832: Domain of un 35.0 1.1E+02 0.0024 21.0 4.5 8 40-47 8-15 (113)
495 smart00638 LPD_N Lipoprotein N 33.3 4E+02 0.0086 24.7 27.2 60 20-84 309-368 (574)
496 COG5191 Uncharacterized conser 31.9 1.3E+02 0.0028 25.2 5.0 78 231-317 106-185 (435)
497 PF04190 DUF410: Protein of un 31.7 2.8E+02 0.0061 22.5 18.5 20 242-261 151-170 (260)
498 PF07064 RIC1: RIC1; InterPro 31.7 2.8E+02 0.0062 22.5 15.8 26 24-49 85-110 (258)
499 TIGR01503 MthylAspMut_E methyl 31.6 2.1E+02 0.0046 25.4 6.5 46 177-225 69-114 (480)
500 cd08780 Death_TRADD Death Doma 31.0 1.5E+02 0.0034 19.3 5.4 56 233-296 33-88 (90)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-60 Score=436.38 Aligned_cols=345 Identities=14% Similarity=0.178 Sum_probs=319.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
++++|+++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN--RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP 158 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (353)
+|.+.| +.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++
T Consensus 532 ~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 532 IMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999988 999999999999999999999999999999976 57889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 018582 159 NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 238 (353)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 238 (353)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582 239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318 (353)
Q Consensus 239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (353)
|.+|++.|++++|.++|++|.+.|+ .||..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~------~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKL------RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999998884 4999999999999999999999999999999999989999999999999
Q ss_pred HHcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582 319 AAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV 352 (353)
Q Consensus 319 ~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 352 (353)
++.|+ .+..++..|.+.|+.||..++..++.+|.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999 66678899999999999999998888763
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-60 Score=433.13 Aligned_cols=327 Identities=17% Similarity=0.224 Sum_probs=318.3
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 98 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 98 (353)
||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.| ..||..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcC
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL--AFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 176 (353)
|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.. .++.||..+|++++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 018582 177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 256 (353)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 256 (353)
++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHh
Q 018582 257 KAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKM 334 (353)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~ 334 (353)
+|.+.|+ .|+..+|+.++.+|++.|++++|.++|++|.+.+..||..+|+.|+.+|++.|+ .+..+++.|..
T Consensus 674 eM~k~G~------~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 674 DARKQGI------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHcCC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999994 499999999999999999999999999999999999999999999999999999 56677999999
Q ss_pred CCCccCHhHHHHHHHHhc
Q 018582 335 EKVEVSEASKKLLEAICV 352 (353)
Q Consensus 335 ~~~~p~~~~~~~l~~~c~ 352 (353)
.|+.||..||..++..|.
T Consensus 748 ~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 748 LGLCPNTITYSILLVASE 765 (1060)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999999885
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-53 Score=388.73 Aligned_cols=331 Identities=17% Similarity=0.224 Sum_probs=280.9
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|.++|++|.+ ||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..
T Consensus 174 ~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 174 LIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3455555555543 455555666666666666666666666665555555656666666666655666556665555
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
+.+.| ..||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 250 ~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 250 VLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 56666 67777788999999999999999999999995 36899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||..+|+.||.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999964 689999999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCCChhhhHHHHHHHHH
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVEVFEPLIRTYAA 320 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 320 (353)
|++.|+.++|+++|++|.+.|+ .||..||+.++.+|.+.|++++|.++|+.|.+ .+..|+..+|+.++.+|++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~------~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGV------APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 9999999999999999999995 49999999999999999999999999999986 6888999999999999999
Q ss_pred cCCChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582 321 AGRTSPVMLRRLKMEKVEVSEASKKLLEAICV 352 (353)
Q Consensus 321 ~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 352 (353)
.|+..++. +.+.+.++.|+..++..|+.+|.
T Consensus 475 ~G~~~eA~-~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 475 EGLLDEAY-AMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred cCCHHHHH-HHHHHCCCCCCHHHHHHHHHHHH
Confidence 99955553 33456689999999999999985
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-52 Score=381.55 Aligned_cols=333 Identities=16% Similarity=0.193 Sum_probs=292.3
Q ss_pred ChHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582 1 MTEKAEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 79 (353)
++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|
T Consensus 102 ~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 181 (697)
T PLN03081 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181 (697)
T ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3678999999998764 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582 80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 159 (353)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (353)
++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.|..
T Consensus 182 ~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 182 DEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred hcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 9885 37888999999999999999999999999999999999999999999999888888888888888888888
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
||..+|+.++.+|++.|++++|.++|++|. .+|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888888999999999999999998888885 4578889999999999999999999999988888888888999999
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
.+|++.|++++|.+++..|.+.|. .||..+++.|+.+|+++|++++|.++|++|.+ ||..+||.||.+|+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~------~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGF------PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCC------CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 999999999999999998888884 48888888888888888888888888888754 77888888888888
Q ss_pred HcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582 320 AAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV 352 (353)
Q Consensus 320 ~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 352 (353)
++|+ .+..+|++|...|+.||..||..++.+|+
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 8888 55567888888888888888888888875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-52 Score=388.85 Aligned_cols=333 Identities=16% Similarity=0.176 Sum_probs=269.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
++++|.++|+.|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++.
T Consensus 237 ~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 237 DVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred CHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 36789999999975 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (353)
.+.+.| ..||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 313 ~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 313 YVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 999999 99999999999999999999999999999986 4788899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
|..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.||++|++.|++++|.++|++|.+ +|..+|+.+|.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~ 463 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIA 463 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998864 46677788888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCCC-----------------------------CcccHHHHHHHHHHHHhcCChhh
Q 018582 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGK-----------------------------WVPSSETIRTFMRHFEQEKDVDG 291 (353)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~ 291 (353)
+|++.|+.++|+++|++|.. +++|+.. +.++..++++|+.+|+++|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 88777777777777777764 3332210 11222222333344444444444
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582 292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV 352 (353)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 352 (353)
|.++|+.+ .+|..+|++++.+|+++|+ .+..+|++|...|+.||..||..++.+|+
T Consensus 543 A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 543 AWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred HHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 44444443 2555566666666666666 34445566666666666666666665554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-51 Score=379.75 Aligned_cols=334 Identities=18% Similarity=0.232 Sum_probs=223.6
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
++.|+++|+.|.+ ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..
T Consensus 137 ~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 4667777777764 677777777777777777777777777777777777777777777777776777777777777
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
+.+.| ..||..+++.|+.+|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||
T Consensus 213 ~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 213 VVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 66666 66666666666666666666666666666664 24566666666666666666666666666666666666
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHH
Confidence 666666666666666666666666666666666666666666666665555555555555553 2345555555555
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCC-----------------------------CcccHHHHHHHHHHHHhcCChhhH
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGK-----------------------------WVPSSETIRTFMRHFEQEKDVDGA 292 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~a 292 (353)
|++.|++++|+++|++|.+.|+.|+.. ..|+..+++.|+.+|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555555332211 346667777777777777777777
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhcC
Q 018582 293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICVE 353 (353)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~~ 353 (353)
.++|++|.+ +|..+|+.++.+|++.|+ .+..+|+.|.. ++.||..|+..++.+|++
T Consensus 444 ~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 444 LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 777777643 566777777888877777 34456778865 699999999999998863
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.9e-24 Score=185.32 Aligned_cols=309 Identities=17% Similarity=0.172 Sum_probs=253.5
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFS 96 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 96 (353)
...........+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+ ..++ ..++.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHH
Confidence 33334444556678899999999999999864 3455688889999999999999999999998864 2222 35678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHH
Q 018582 97 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN----ISYLNMIQVL 172 (353)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 172 (353)
.++..|.+.|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+...++.+.. ..+..+...+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 899999999999999999999987543 46788999999999999999999999999887654332 2455677788
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582 173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 252 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 252 (353)
.+.|++++|...++++.+..+. +...+..+...|.+.|++++|.++++++.+.+......+++.++.+|...|++++|.
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 191 LARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999876533 567888899999999999999999999997643333467888999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH---cCC--ChHH
Q 018582 253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA---AGR--TSPV 327 (353)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~--~~~~ 327 (353)
+.++++.+.. |+...+..++..+.+.|++++|..+++++.+.. |+...++.++..+.. .|+ .+..
T Consensus 270 ~~l~~~~~~~--------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 270 EFLRRALEEY--------PGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred HHHHHHHHhC--------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHH
Confidence 9999999876 777777889999999999999999999988874 677788888887775 335 4446
Q ss_pred HHHHHHhCCCccCHh
Q 018582 328 MLRRLKMEKVEVSEA 342 (353)
Q Consensus 328 ~~~~m~~~~~~p~~~ 342 (353)
+++.|.+.++.|++.
T Consensus 340 ~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 340 LLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhCCCC
Confidence 689999988888876
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.6e-24 Score=185.77 Aligned_cols=294 Identities=15% Similarity=0.097 Sum_probs=248.8
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChhHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDISGAERV 78 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~ 78 (353)
+++|.+.|+.+.+.+. .+..++..+...+...|++++|...++.+...+..++ ...+..+...+...|+++.|..+
T Consensus 51 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 129 (389)
T PRK11788 51 PDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL 129 (389)
T ss_pred hHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5789999999998763 4667899999999999999999999999987532221 24678888999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 79 IEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL----SAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.++.+.. ..+..+...+.+.|++++|...|+++.
T Consensus 130 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 130 FLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999986 4667889999999999999999999999999886654332 245667788899999999999999998
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh
Q 018582 155 LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT 234 (353)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 234 (353)
+..+ .+...+..+...+.+.|++++|.++++++...++.....+++.++.+|...|++++|...++++.+. .|+...
T Consensus 208 ~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~ 284 (389)
T PRK11788 208 AADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADL 284 (389)
T ss_pred hHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchH
Confidence 7654 3456788889999999999999999999997755444567889999999999999999999999886 466677
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChh
Q 018582 235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDDLGVE 309 (353)
Q Consensus 235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 309 (353)
+..++..+.+.|++++|..+++++.+.. |+...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~~--------P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRRH--------PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--------cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7889999999999999999999999876 898889888887764 558999999999999866656655
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.7e-23 Score=197.15 Aligned_cols=316 Identities=19% Similarity=0.159 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|..+|+.+...+. .+...+..++..+.+.|++++|.++++.+.+.. +.+..+|..+..++...|++++|...|+.
T Consensus 549 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5677777777766553 455667777777777777777777777776642 44566777777777777777777777777
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
+.+. .+.+...+..+..++.+.|++++|...++++.+..+. +..++..++..+...|++++|.++++.+.+..+ .+
T Consensus 627 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 702 (899)
T TIGR02917 627 LLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KA 702 (899)
T ss_pred HHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence 7765 3455666777777777777777777777777665433 566777777777777777777777777766654 35
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
...+..+...+...|++++|.+.++.+....+. ..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 556666777777777777777777777665433 3555666777777777777777777766653 3356666667777
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
|...|++++|.+.|+++.+.. +++..++..+...+...|+ .+|...++++.+..+ .++.++..+...+.+.
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKA-------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 777777777777777777664 1345666666666666666 567777776666655 5566666666666666
Q ss_pred CCChHH--HHHHHHhC
Q 018582 322 GRTSPV--MLRRLKME 335 (353)
Q Consensus 322 g~~~~~--~~~~m~~~ 335 (353)
|++.++ .++.+.+.
T Consensus 851 g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 851 GEADRALPLLRKAVNI 866 (899)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 664433 34444443
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=6.3e-23 Score=194.65 Aligned_cols=306 Identities=16% Similarity=0.122 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|.+.|+.+.+.+. .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|...+++
T Consensus 481 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 481 LAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555555544332 233444445555555555555555555554432 22334444444455555555555555555
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-- 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 159 (353)
+.+. .+.+...+..++..|.+.|++++|..+++.+....+ .+..+|..+...+...|++++|...|+.+.+..+.
T Consensus 559 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 635 (899)
T TIGR02917 559 AAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635 (899)
T ss_pred HHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 4443 233334444444444445555555554444443322 23444444444444444444444444444433221
Q ss_pred -------------------------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582 160 -------------------------------TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 208 (353)
Q Consensus 160 -------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (353)
.+..++..++..+...|++++|.++++.+....+ .+...+..+...+.
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHH
Confidence 2334444444444455555555555554444432 24444444555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582 209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD 288 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (353)
..|++++|.+.|+.+...+ |+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...|...|+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-------PNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcC
Confidence 5555555555555555432 233444445555555555555555555555543 1234555555555555666
Q ss_pred hhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 289 VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+++|...|+++.+..| .++.+++.+...+.+.|+
T Consensus 786 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 786 YDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc
Confidence 6666666666655555 555556666666665555
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.4e-20 Score=169.51 Aligned_cols=311 Identities=14% Similarity=0.063 Sum_probs=250.9
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|+.+++....... -+...+..++......|++++|.+.|+++.... +.+...+..+...+...|++++|...+++
T Consensus 58 ~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 58 TDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred cchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5678888888887654 345566677777788999999999999998853 34556788888899999999999999999
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
+.+. .+.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++|...++.+....+.++
T Consensus 136 Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 136 AWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 9986 46667788889999999999999999999887765543 3344333 347889999999999999877655445
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCChhhHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN----AEELKERARRRGADPNAKTWEI 237 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~ 237 (353)
...+..+..++...|++++|...+++.....+. +...+..+...+...|++++ |...|++..+..+ .+...+..
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~ 289 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTL 289 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 555566678888999999999999999987644 67888889999999999986 7999999887643 35678889
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
+...+...|++++|+..+++..+.. |+ ...+..+..++.+.|++++|...++++.+.++ .+...+..+..
T Consensus 290 lg~~l~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~ 360 (656)
T PRK15174 290 YADALIRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHH
Confidence 9999999999999999999999876 44 56777888899999999999999999998876 45555566678
Q ss_pred HHHHcCCChHHHH
Q 018582 317 TYAAAGRTSPVML 329 (353)
Q Consensus 317 ~~~~~g~~~~~~~ 329 (353)
++...|+..+++-
T Consensus 361 al~~~G~~deA~~ 373 (656)
T PRK15174 361 ALLQAGKTSEAES 373 (656)
T ss_pred HHHHCCCHHHHHH
Confidence 8899999665553
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.3e-19 Score=161.65 Aligned_cols=302 Identities=10% Similarity=0.044 Sum_probs=246.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
.+++|++.|+.+....+ .+...+..+...+.+.|++++|.+.|++..... +.+...+..+...+...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 36889999999998764 567788999999999999999999999998852 3456678889999999999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (353)
.+.... +.+...+..+ ..+.+.|++++|...++.+....+.++...+..+...+...|++++|+..+++.....+ .
T Consensus 169 ~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~ 244 (656)
T PRK15174 169 TQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-D 244 (656)
T ss_pred HHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C
Confidence 887753 3444444444 34788999999999999988765544555566667889999999999999999988765 3
Q ss_pred ChhHHHHHHHHHHhcCChhH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH
Q 018582 161 ANISYLNMIQVLVNLKDLPG----AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE 236 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 236 (353)
+...+..+...+...|++++ |...+++.....+. +...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 56778889999999999986 89999999987654 7889999999999999999999999999986432 456777
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHH
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI 315 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 315 (353)
.+...+.+.|++++|++.++.+...+ |+.. .+..+..++...|+.++|...|++..+..+......|...+
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~--------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~ 394 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREK--------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGL 394 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHH
Confidence 88899999999999999999999876 6543 34445678899999999999999999877644444444444
Q ss_pred HHH
Q 018582 316 RTY 318 (353)
Q Consensus 316 ~~~ 318 (353)
..|
T Consensus 395 ~~~ 397 (656)
T PRK15174 395 LAL 397 (656)
T ss_pred HHH
Confidence 333
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.6e-18 Score=156.44 Aligned_cols=319 Identities=12% Similarity=0.036 Sum_probs=236.4
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH--
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI-- 79 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~-- 79 (353)
+++|++.|+...... |+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|...|
T Consensus 143 ~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 143 FNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578888888877654 677778888888888888888888888887743 223446666666777777766665433
Q ss_pred --------------------------------------------------------------------------------
Q 018582 80 -------------------------------------------------------------------------------- 79 (353)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (353)
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence
Q ss_pred ------------------HHHHHcCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582 80 ------------------EEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT 140 (353)
Q Consensus 80 ------------------~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (353)
+.....+...| ....++.+...+...|++++|+..+++.....+. ...+|..+...+...
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLEL 378 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHC
Confidence 22222110112 2334566666777788888888888888775433 466788888888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 018582 141 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 220 (353)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 220 (353)
|++++|...|++..+..+ .+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...|
T Consensus 379 g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998877654 35678888888999999999999999999887644 6777888889999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH-HHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582 221 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 221 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (353)
++..+.. +.+...++.+...+...|++++|++.|++.......... ...+. ..++.....+...|++++|.+.+++.
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9988753 335678888999999999999999999999887521000 00111 12222233344579999999999999
Q ss_pred HhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582 300 KKAVDDLGVEVFEPLIRTYAAAGRTSPVML 329 (353)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 329 (353)
...++ .+...+..+...+.+.|+..+++-
T Consensus 535 l~l~p-~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 535 LIIDP-ECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HhcCC-CcHHHHHHHHHHHHHccCHHHHHH
Confidence 99887 777889999999999999766553
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.5e-19 Score=150.93 Aligned_cols=324 Identities=19% Similarity=0.214 Sum_probs=257.7
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc------------------------
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY------------------------ 57 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------------ 57 (353)
+++|+.+++.+.+... ..+..|..+..++...|+.+.|.+.|.+..+. .|+..
T Consensus 132 ~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 5788999999988663 46778999999999999999998888887763 34332
Q ss_pred -----------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582 58 -----------TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD-WTTFSNLASIYVEAGLFEKAERALKELENRNAHR 125 (353)
Q Consensus 58 -----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (353)
.|..+...+-..|++-.|++.|++..+. .|+ ...|-.|...|...+.++.|...+.+.....+.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn- 284 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN- 284 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-
Confidence 2333333344456666666666666663 333 456667777777777788887777777654333
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205 (353)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (353)
...++..+...|...|..+-|+..|++..+..+. -...|+.+..++-..|+..+|...|.+.....+. .....+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 4566777777788888888888888888776542 4568999999999999999999999999887644 6678888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHH
Q 018582 206 AYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHF 283 (353)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 283 (353)
.|...|.+++|..+|....+- .|+ ...++.|...|-+.|++++|+..+++.++.. |+ ...|+.+...|
T Consensus 363 i~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTY 432 (966)
T ss_pred HHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHH
Confidence 999999999999999998874 444 4678999999999999999999999999865 77 67899999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHH
Q 018582 284 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKK 345 (353)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~ 345 (353)
-..|+.+.|.+.+.+.+..+| .-...++.|...|-..|...+++-..-....++||..-..
T Consensus 433 ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 999999999999999999888 7788999999999999999999987777888888876533
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.6e-17 Score=158.12 Aligned_cols=307 Identities=15% Similarity=0.118 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc---hHH------------HHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY---TYN------------VWMRAL 66 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~------------~ll~~~ 66 (353)
+++|+..|+...+... .+..++..+...+.+.|++++|+..|++..+.. |+.. .|. .....+
T Consensus 285 ~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 285 GGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 5788889988887653 467788888899999999999999999888753 3321 121 123456
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH-----------
Q 018582 67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT----------- 135 (353)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------- 135 (353)
.+.|++++|...|+++.+. .+.+...+..+...+...|++++|++.|++..+..+. +..++..+..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHH
Confidence 7889999999999999886 4566777778889999999999999999988775443 3333433333
Q ss_pred -------------------------------HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582 136 -------------------------------LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184 (353)
Q Consensus 136 -------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (353)
.+...|++++|++.|++..+..+. +...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333456666666666666655432 344555566666666777777666
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------------------------------------
Q 018582 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG------------------------------------- 227 (353)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------------------------------------- 227 (353)
++++.+..+. +...+..+...+...++.++|...++.+....
T Consensus 518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666554322 33333333333333444444444433321110
Q ss_pred --CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 018582 228 --ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD 305 (353)
Q Consensus 228 --~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 305 (353)
.+++...+..+...+.+.|++++|++.|++.++.. +.+...+..+...+...|++++|.+.++.+.+..+
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p- 668 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-------PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN- 668 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence 12233344444555555566666666666655543 02345555555566666666666666665555444
Q ss_pred CChhhhHHHHHHHHHcCCC
Q 018582 306 LGVEVFEPLIRTYAAAGRT 324 (353)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~ 324 (353)
.+...+..+..++.+.|+.
T Consensus 669 ~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred CChHHHHHHHHHHHhCCCH
Confidence 4445555555555555553
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.9e-17 Score=149.55 Aligned_cols=302 Identities=11% Similarity=-0.023 Sum_probs=239.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (353)
.+......+.+.|++++|+..|++... +.|+...|..+..++.+.|++++|+..++...+. .+.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 355667788999999999999999987 4688888999999999999999999999999986 456778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHccCC----------------------------C-CHHHHHHHHH------------------
Q 018582 103 VEAGLFEKAERALKELENRNAH----------------------------R-DLSAYQFLIT------------------ 135 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~----------------------------~-~~~~~~~l~~------------------ 135 (353)
...|++++|+.-|......... | +...+..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999998766543221110 0 0000000000
Q ss_pred ------------H------HHccCCHHHHHHHHHHHHHhC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 018582 136 ------------L------YGQTGNLSEVYRIWRSLRLAF-PNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 195 (353)
Q Consensus 136 ------------~------~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (353)
. ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...+++.....+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 0 012357889999999988764 223 3456788888899999999999999999887543
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSE 274 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~ 274 (353)
+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|+..|++.++.. | +..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~~ 434 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFIF 434 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCHH
Confidence 57788889999999999999999999998764 3357889999999999999999999999999986 5 467
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCcc
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEV 339 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p 339 (353)
.+..+...+.+.|++++|...+++..+..| .++..|+.+...+...|++.+++-..-+...+.|
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 788888999999999999999999998887 7889999999999999997666643333334444
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.5e-16 Score=145.03 Aligned_cols=339 Identities=10% Similarity=0.024 Sum_probs=245.3
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
.++|++++....... +.+...+..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|...+++
T Consensus 31 ~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~ 108 (765)
T PRK10049 31 DAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQ 108 (765)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 578888888887633 2455568999999999999999999999988752 34456677788888999999999999999
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHH----------
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR---------- 151 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------- 151 (353)
+.+. .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..++|++.++
T Consensus 109 ~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~ 184 (765)
T PRK10049 109 LVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR 184 (765)
T ss_pred HHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence 9886 456666 888899999999999999999999887655 55566666666666666665544333
Q ss_pred ------------------------------------HHHHh-CCCCChh-HHH----HHHHHHHhcCChhHHHHHHHHHH
Q 018582 152 ------------------------------------SLRLA-FPNTANI-SYL----NMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 152 ------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 33322 1112211 111 11334567799999999999998
Q ss_pred hcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 018582 190 SGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 265 (353)
Q Consensus 190 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (353)
+.+.. |+. ....+..+|...|++++|...|+++.+..... .......+..++...|++++|.++++.+.....+.
T Consensus 265 ~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 265 AEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred ccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence 87632 332 22235778999999999999999988653221 12456667778899999999999999998864100
Q ss_pred -----CCCCccc---HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCC
Q 018582 266 -----GGKWVPS---SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 337 (353)
Q Consensus 266 -----~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~ 337 (353)
.....|+ ...+..+...+...|+.++|.+.++++....| .+...+..++..+...|+...++-..-+...+
T Consensus 344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0001233 23456677788999999999999999999988 88999999999999999966655444455566
Q ss_pred ccCHhHHHHHH
Q 018582 338 EVSEASKKLLE 348 (353)
Q Consensus 338 ~p~~~~~~~l~ 348 (353)
.|+...+....
T Consensus 423 ~Pd~~~l~~~~ 433 (765)
T PRK10049 423 EPRNINLEVEQ 433 (765)
T ss_pred CCCChHHHHHH
Confidence 78875544433
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=8e-17 Score=154.78 Aligned_cols=319 Identities=14% Similarity=0.057 Sum_probs=216.9
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHH----------------
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA---------------- 65 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---------------- 65 (353)
+++|++.|++..+... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 367 ~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 367 LAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 5789999999988763 466778888999999999999999999998753 2233344333333
Q ss_pred --------------------------HHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018582 66 --------------------------LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 119 (353)
Q Consensus 66 --------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (353)
+...|++++|.+.|++..+. .+.+...+..+...|.+.|++++|...++++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445666666666666554 23344455556666666666666666666655
Q ss_pred HccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh---------hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018582 120 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN---------ISYLNMIQVLVNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 190 (353)
+..+. +...+..+...+...+++++|+..++.+......++. ..+......+...|+.++|.++++.
T Consensus 523 ~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 523 QQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred HcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 43332 3333333444445556666666665554322111111 1122345566777777788777762
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCc
Q 018582 191 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 270 (353)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (353)
.+.+...+..+...+.+.|++++|...|++..+..+ .+...+..++..+...|++++|++.++.+.+..
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-------- 667 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-------- 667 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--------
Confidence 234666778899999999999999999999998743 367889999999999999999999999888764
Q ss_pred c-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-----ChhhhHHHHHHHHHcCCChHHH--H-HHHHhCCCcc
Q 018582 271 P-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL-----GVEVFEPLIRTYAAAGRTSPVM--L-RRLKMEKVEV 339 (353)
Q Consensus 271 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~~~--~-~~m~~~~~~p 339 (353)
| +..++..+..++...|++++|.++++++....+.. +...+..+...+.+.|+..+++ + +.|...|+.|
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4 45667778888999999999999999998865422 2246667788899999955544 3 3455555654
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=4.8e-16 Score=143.14 Aligned_cols=330 Identities=10% Similarity=-0.009 Sum_probs=246.0
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|.++|+...+..+ .+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...+++
T Consensus 65 ~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 65 WQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 5789999999887653 456778888899999999999999999998863 34455 88888899999999999999999
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH---------------------------------------------
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK--------------------------------------------- 116 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------------------------------------------- 116 (353)
+.+. .+.+...+..+..++...+..+.|++.++
T Consensus 142 al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 142 ALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 9996 45566666667777766666665554443
Q ss_pred -HHHHc-cCCCCHH-HHH----HHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 117 -ELENR-NAHRDLS-AYQ----FLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 117 -~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. .-..+..++...|++++|...|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 33321 1112211 111 1123456779999999999999887642 332 2333577899999999999999998
Q ss_pred HhcCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHccCChHHH
Q 018582 189 ESGCATY---DIRVTNVMIGAYAKEGRLENAEELKERARRRGA-----------DPN---AKTWEIFSDYYLRNGDMKLA 251 (353)
Q Consensus 189 ~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a 251 (353)
.+..+.. .......+..++...|++++|...++.+..... .|+ ...+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 8654321 134566677788999999999999999987521 122 12455677888999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh--HHHH
Q 018582 252 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS--PVML 329 (353)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~~ 329 (353)
+++++++.... +.+...+..+...+...|++++|++.++++.+..| .+...+..++..+.+.|++. ++++
T Consensus 379 ~~~l~~al~~~-------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 379 EMRARELAYNA-------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999875 13578889999999999999999999999999998 88888999999999999944 4556
Q ss_pred HHHHhCCCccCHhHHHHH
Q 018582 330 RRLKMEKVEVSEASKKLL 347 (353)
Q Consensus 330 ~~m~~~~~~p~~~~~~~l 347 (353)
+.+.+ ..|+......+
T Consensus 451 ~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 451 DDVVA--REPQDPGVQRL 466 (765)
T ss_pred HHHHH--hCCCCHHHHHH
Confidence 66555 35666554433
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1e-17 Score=140.16 Aligned_cols=305 Identities=15% Similarity=0.115 Sum_probs=184.2
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH-HHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNL 98 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l 98 (353)
-..+|..+.+.+-..|+++.|+..|+.+.+.. +-....|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhcch
Confidence 45789999999999999999999999999853 335678999999999999999999999988884 45433 22334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL--- 175 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 175 (353)
.......|++++|...+.+..+..+. -..+|+.|...+-..|+...|+..|++.....+. -...|-.+...|...
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcc
Confidence 44455556666666666555443221 2334555555555555555555555555443221 123444444444444
Q ss_pred -------------------------------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582 176 -------------------------------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 224 (353)
Q Consensus 176 -------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (353)
|..|.|...|++..+..+. -...|+.|..++-..|+..+|.+.|++.+
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 5555555555554444322 34455556666555666666666665555
Q ss_pred hcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 225 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 225 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
... .-.....+.|...+...|.++.|..+|....+-. |. ...++.|...|-+.|++++|..-+++.+...
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 442 1134455555566666666666666666555543 43 4455666666666666666666666666655
Q ss_pred CCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582 304 DDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE 341 (353)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~ 341 (353)
| .-...|+.+...|-..|+...++-..++...+.|..
T Consensus 419 P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 419 P-TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF 455 (966)
T ss_pred c-hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence 5 455566666666666666555555555555555544
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.3e-18 Score=141.78 Aligned_cols=262 Identities=17% Similarity=0.197 Sum_probs=115.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 018582 26 SLMTLYAKTGHPEKIPAIIQEMKASSIMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 104 (353)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (353)
.+...+.+.|++++|+++++.......+| |...|..+...+...++++.|...++++...+ +-+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 55788889999999999997655443234 44555666677778999999999999999875 3466677778887 79
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHH
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEK 183 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 183 (353)
.+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998876543 456678888899999999999999999987543 34567788889999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 263 (353)
.+++..+..+. |....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+.++++..+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 99999998654 78889999999999999999999999888763 4566788899999999999999999999999976
Q ss_pred CCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 264 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
+.|+.....+..++...|+.++|.++.+++.+
T Consensus 245 ------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 ------PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ------TT-HHHHHHHHHHHT-----------------
T ss_pred ------cccccccccccccccccccccccccccccccc
Confidence 13688889999999999999999999887654
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=3.4e-14 Score=129.18 Aligned_cols=334 Identities=11% Similarity=0.005 Sum_probs=214.1
Q ss_pred hHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-cchHHHH--HHHHHhcCChhHHH
Q 018582 2 TEKAEALLEKMKELNLGFSS--MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVW--MRALAAVNDISGAE 76 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l--l~~~~~~~~~~~a~ 76 (353)
+++|++.|+...+.. |+. ..+ .++..+...|+.++|+..+++.. .|+ ...+..+ ...+...|++++|.
T Consensus 50 ~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 50 TAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 456777777776655 332 233 66666677777777777777766 232 2223333 44566667777777
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582 77 RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
++|+++.+. .+.+...+..++..+.+.++.++|++.++++.... |+...+..++..+...++..+|++.++++.+.
T Consensus 123 ely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 123 ALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 777777775 34555666666677777777777777777766542 33333433333333344454466666665544
Q ss_pred CCCCChhHHHHH--------------------------------------------------------------------
Q 018582 157 FPNTANISYLNM-------------------------------------------------------------------- 168 (353)
Q Consensus 157 ~~~~~~~~~~~l-------------------------------------------------------------------- 168 (353)
.+. +...+..+
T Consensus 199 ~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 321 11111111
Q ss_pred ---------------------HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582 169 ---------------------IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227 (353)
Q Consensus 169 ---------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (353)
+-++...++..++.+.|+.+...+.+.-..+-..+.++|...+++++|..+|..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 22344456666666667766665544344566788899999999999999999987642
Q ss_pred -----CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-------CCCCCcccH-HHHHHHHHHHHhcCChhhHHH
Q 018582 228 -----ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG-------DGGKWVPSS-ETIRTFMRHFEQEKDVDGAEG 294 (353)
Q Consensus 228 -----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 294 (353)
..++......|.-++...+++++|..+++++.+.... |.....||- .....++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223344578899999999999999999999984210 111122342 345556777899999999999
Q ss_pred HHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHH
Q 018582 295 FLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLE 348 (353)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~ 348 (353)
.++++....| -|......+...+...|....+.-..-....+.|+........
T Consensus 438 ~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 438 KLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 9999999999 9999999999999999994444332233344577766544433
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=3.8e-15 Score=119.75 Aligned_cols=294 Identities=12% Similarity=0.087 Sum_probs=216.2
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 98 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 98 (353)
.+..+|.++|.+.++-...+.|.++|++......+.+..+||.+|.+-+-..+ .+++.+|.+.. ..||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqk-m~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQK-MTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhh-cCCchHhHHHH
Confidence 46689999999999999999999999999888788999999999977554333 78899999987 99999999999
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHh----CCCC----ChhHH
Q 018582 99 ASIYVEAGLFEK----AERALKELENRNAHRDLSAYQFLITLYGQTGNLSE-VYRIWRSLRLA----FPNT----ANISY 165 (353)
Q Consensus 99 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~ 165 (353)
+++..+.|+++. |.+++.+|++.|++|...+|..+|..+++.+++.+ +..++.++... ..+| |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998775 56788889999999999999999999999888855 44444444322 2222 44567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC----CCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGC----ATYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 238 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 238 (353)
...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|.....+.-...|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 788888999999999988877665321 1222 234556667777777888888888888876677888888888
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCCC------------------------------------------------Cc
Q 018582 239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGK------------------------------------------------WV 270 (353)
Q Consensus 239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------------------------------~~ 270 (353)
+++..-.+.++-.-++|.++...|..-.+. ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 888888888877777777776665221111 11
Q ss_pred ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhhHHHHHH
Q 018582 271 PSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV-DDLGVEVFEPLIRT 317 (353)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 317 (353)
......+.++..+.+.|..++|.+++..+.+.+ -.|-....|+++..
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 233344555556777888888888888774432 22444445544433
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=1.5e-14 Score=123.37 Aligned_cols=274 Identities=10% Similarity=0.066 Sum_probs=208.0
Q ss_pred cCCcchHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHhcCCHHH
Q 018582 34 TGHPEKIPAIIQEMKASSIMPDSYTY-NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS--NLASIYVEAGLFEK 110 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 110 (353)
.|++++|.+.+....+.. +++..+ .....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 699999998887765542 233333 33345558899999999999999874 45554332 34678899999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCChhHHHH
Q 018582 111 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-------ISYLNMIQVLVNLKDLPGAEK 183 (353)
Q Consensus 111 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 183 (353)
|...++++.+..+. +......+...|.+.|+|++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999887755 6788889999999999999999999999887654322 234444555555566677777
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582 184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 263 (353)
+++.+.+.- +.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++++..+...+..
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence 777765442 347788888999999999999999999998874 444422 23444456689999999999998876
Q ss_pred CCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 264 GDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 264 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
| |...+..+.+.+.+.+++++|.+.|+...+.. |+...+..+...+.+.|+..++.
T Consensus 325 -------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 325 -------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred -------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHH
Confidence 5 45678888899999999999999999998765 67788889999999999955554
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=6.2e-14 Score=127.56 Aligned_cols=313 Identities=12% Similarity=0.041 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|+++|+.+.+..+ .++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4677777777777653 34556666667777777777777777777664 35555554443344344555557777777
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH---------------------------------------------
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK--------------------------------------------- 116 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------------------------------------------- 116 (353)
+.+. .+.+...+..+..++.+.|-...|.++..
T Consensus 195 ll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 7775 35556666666666665554443333322
Q ss_pred ---HHHHc-cCCCCH-HHH----HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582 117 ---ELENR-NAHRDL-SAY----QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187 (353)
Q Consensus 117 ---~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (353)
.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 21110 011111 111 122346678899999999999999888665667888999999999999999999999
Q ss_pred HHhcC-----CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----------CCC--h-hhHHHHHHHHHccCCh
Q 018582 188 WESGC-----ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-----------DPN--A-KTWEIFSDYYLRNGDM 248 (353)
Q Consensus 188 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~--~-~~~~~li~~~~~~~~~ 248 (353)
+.... ..++......|..+|...+++++|..+++.+.+..+ .|+ - ..+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87643 133444467899999999999999999999987421 122 1 2345567778899999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582 249 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 327 (353)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 327 (353)
.+|++.++++.... +-|......+...+...|.+..|.+.++......| .+..+....+.++...|++..+
T Consensus 433 ~~Ae~~le~l~~~a-------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 433 PTAQKKLEDLSSTA-------PANQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999998886 14788999999999999999999999999888887 8888999999999999995544
No 26
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.5e-14 Score=112.17 Aligned_cols=289 Identities=17% Similarity=0.208 Sum_probs=225.0
Q ss_pred cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHhcCCHHHH
Q 018582 34 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKA 111 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a 111 (353)
+.+.++|.++|-+|.+.. +-+..+.-++.+.|-+.|.++.|+++.+.+.++.+.+.+. .....|..=|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 577899999999998842 3344566778899999999999999999999864222222 2335577889999999999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChhHHHHHHHH
Q 018582 112 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDLPGAEKCFKE 187 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 187 (353)
+.+|..+.+.+.. -..+...|+..|-...+|++|+++-+++...+..+... .|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999875433 56688899999999999999999999998887665443 466677777778899999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 018582 188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG 267 (353)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (353)
..+.+++ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~----- 279 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN----- 279 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence 9987744 6677777889999999999999999999998655556778889999999999999999999999986
Q ss_pred CCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC---ChH--HHHHHHHhC
Q 018582 268 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR---TSP--VMLRRLKME 335 (353)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~--~~~~~m~~~ 335 (353)
+....-..+...-......+.|...+.+-.... |+...+..|+..-..... +.+ .+++.|...
T Consensus 280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 ---TGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 555555556555555566777777776655544 788888888887655443 222 334555544
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=3.4e-14 Score=121.17 Aligned_cols=281 Identities=11% Similarity=0.117 Sum_probs=216.1
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHH-HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHH--HHHHHHHhcCChhHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSL-MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN--VWMRALAAVNDISGAERV 78 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~ 78 (353)
+++|++.+..-.+.. +++..+..+ .....+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...
T Consensus 100 ~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 100 YQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred HHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 567777777655532 233333333 44458899999999999999874 56665443 335688899999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHccCCHHHHHHHHH
Q 018582 79 IEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYRIWR 151 (353)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 151 (353)
++++.+. .|-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 176 l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 176 VDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999987 4667888899999999999999999999999887665322 133344444445556667777777
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582 152 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 231 (353)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 231 (353)
.+...- +.+......+...+...|+.++|.+++.+..+.. ++... .++.+....++.+++.+..+...+..+ -|
T Consensus 254 ~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~ 327 (398)
T PRK10747 254 NQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DT 327 (398)
T ss_pred hCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CC
Confidence 664432 3467788889999999999999999999988853 34422 233444456999999999999988743 35
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
...+..+...|.+.+++++|.+.|+...+.. |+...+..+...+.+.|+.++|...+++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678889999999999999999999999987 99999999999999999999999999987653
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=3.1e-14 Score=122.09 Aligned_cols=287 Identities=10% Similarity=0.027 Sum_probs=210.2
Q ss_pred HHHHHHHH--HhcCCcchHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH--HHHHHH
Q 018582 24 FNSLMTLY--AKTGHPEKIPAIIQEMKASSIMPDSYTY-NVWMRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNL 98 (353)
Q Consensus 24 ~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 98 (353)
+..+..+. ...|+++.|.+.+.+..+. .|+...+ -....+..+.|+.+.|.+.+.+..+. .|+. .+....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~ 159 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHH
Confidence 34444443 3479999999999887764 3554443 44457788899999999999998874 3444 344446
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH-HHHHHH---Hh
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL-NMIQVL---VN 174 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~ 174 (353)
...+...|+++.|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999988765 7778899999999999999999999999988654 333331 111221 23
Q ss_pred cCChhHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHccCCh
Q 018582 175 LKDLPGAEKCFKEWESGCAT---YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT---WEIFSDYYLRNGDM 248 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~~~~ 248 (353)
.+..+.+.+.+..+.+..+. .+...+..+...+...|+.++|.+++++..+.. ||... ...........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 33333334455555444322 378889999999999999999999999999863 34332 12222223445788
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccc-H--HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582 249 KLAVDCLEKAIDTGRGDGGKWVPS-S--ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 325 (353)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (353)
+.+.+.++...+.. |+ + ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+..
T Consensus 316 ~~~~~~~e~~lk~~--------p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 316 EKLEKLIEKQAKNV--------DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred HHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 89999999988875 44 4 5677899999999999999999996555444478888899999999999944
Q ss_pred HH
Q 018582 326 PV 327 (353)
Q Consensus 326 ~~ 327 (353)
++
T Consensus 388 ~A 389 (409)
T TIGR00540 388 EA 389 (409)
T ss_pred HH
Confidence 43
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=1.5e-13 Score=127.54 Aligned_cols=320 Identities=13% Similarity=0.081 Sum_probs=208.9
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC-C-CCCCcchHHHHHHHHHhcCC----------
Q 018582 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-S-IMPDSYTYNVWMRALAAVND---------- 71 (353)
Q Consensus 4 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~---------- 71 (353)
+|.+.+..|.+... -+....-.+--...+.|+.++|.++|+..... + ..++.....-++..+.+.+.
T Consensus 360 ~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 45555666655421 34555555555667788888888888877652 1 12222233355555555544
Q ss_pred ---------------hhHHHHHHHHHHHc-CCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582 72 ---------------ISGAERVIEEMKRD-GRVAA--DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 133 (353)
Q Consensus 72 ---------------~~~a~~~~~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 133 (353)
..++...++..... +..++ +...|..+..++.. ++.++|...+.+..... |+......+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 11112222222221 10244 56677777777776 77878888777776543 454443344
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 213 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (353)
...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...+++..+..+. +...+..+.......|++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCH
Confidence 45556788888888888876544 233445566677778888888888888888776533 333333344444455888
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhH
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGA 292 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 292 (353)
++|...+++..+. .|+...+..+...+.+.|++++|+..+++..... | +...+..+..++...|++++|
T Consensus 593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--------Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--------PNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888775 4567778888888888888888888888888876 4 456777777788888888888
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582 293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE 341 (353)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~ 341 (353)
...+++..+..| .++..+..+..++...|+.++++-..-+...+.|+.
T Consensus 663 i~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 663 REMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 888888888887 778888888888888888666554444444455554
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=5.1e-14 Score=130.65 Aligned_cols=283 Identities=13% Similarity=0.025 Sum_probs=211.9
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
+...|..+..++.. +++++|...|.+.... .|+......+...+...|++++|...|+++.. .+|+...+..+.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la 549 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAAA 549 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHHH
Confidence 56677888877776 7888899988887764 36654444445555688999999999998766 345555566778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 179 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (353)
..+.+.|++++|...+++..+..+. +...+..+.......|++++|...+++..+..+ +...+..+..++.+.|+++
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHH
Confidence 8888999999999999988876533 333343444455566999999999998887654 5778888889999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 018582 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259 (353)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 259 (353)
+|...+++.....+. +...++.+..++...|++++|+..|++..+..+ -+...+..+..++...|++++|+..+++..
T Consensus 627 eA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999888754 778888888899999999999999999887643 356778888899999999999999999998
Q ss_pred HcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 260 DTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+.. |+ ..+.........+..+++.+.+-+++....++ +..+.......+...++
T Consensus 705 ~l~--------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~--~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 705 DDI--------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF--DSSIGLRSGAMSTANNN 759 (987)
T ss_pred hcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc--cchhccccchHhhhccc
Confidence 876 54 35555556666677778888887777766554 22255555555554444
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=5.3e-14 Score=120.66 Aligned_cols=283 Identities=12% Similarity=0.082 Sum_probs=209.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChhHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMP-FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY--TYNVWMRALAAVNDISGAER 77 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 77 (353)
+++.|.+.+....+.. |+... +-....+..+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|..
T Consensus 99 ~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 99 DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3678888888776654 54433 344457788899999999999998764 35554 33345788889999999999
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH-HHHH---HHHccCCHHHHHHHHHHH
Q 018582 78 VIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ-FLIT---LYGQTGNLSEVYRIWRSL 153 (353)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~ 153 (353)
.++.+.+. .|-+..+...+...+.+.|++++|.+.+..+.+.+.. +...+. .-.. .....+..++..+.+..+
T Consensus 175 ~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 175 GVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999997 4667788899999999999999999999999988654 333332 1112 223333334444455555
Q ss_pred HHhCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCC
Q 018582 154 RLAFPN---TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA--YAKEGRLENAEELKERARRRGA 228 (353)
Q Consensus 154 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~ 228 (353)
.+..+. .+...+..+...+...|+.++|.+++++..+..+......+. ++.. ....++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 544332 367788889999999999999999999999875443221111 2222 23357788899999888876
Q ss_pred CCC-h--hhHHHHHHHHHccCChHHHHHHHHH--HHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 229 DPN-A--KTWEIFSDYYLRNGDMKLAVDCLEK--AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 229 ~p~-~--~~~~~li~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.|+ . ....++...+.+.|++++|.+.|+. ..+.. |+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~--------p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ--------LDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344 3 4566888999999999999999995 54444 8988899999999999999999999998654
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1.2e-16 Score=130.21 Aligned_cols=251 Identities=19% Similarity=0.189 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 2 TEKAEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
+++|+++++...... .+.|...|..+.......++++.|.+.++++...+ +-+...+..++.. ...+++++|.+++.
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~ 101 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAE 101 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccccccccc
Confidence 578999996554443 33456667777777888999999999999998865 2356677777777 79999999999998
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 159 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (353)
...+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|++++|++.+++..+..+.
T Consensus 102 ~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 102 KAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred ccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 87764 3566777889999999999999999999986533 3457788899999999999999999999999987653
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
|......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+.. +.|......+.
T Consensus 179 -~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a 255 (280)
T PF13429_consen 179 -DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYA 255 (280)
T ss_dssp --HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHH
T ss_pred -CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccc
Confidence 57778889999999999999999999888765 4466788899999999999999999999998863 33788888999
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 018582 240 DYYLRNGDMKLAVDCLEKAID 260 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~ 260 (353)
.++...|+.++|.++.++..+
T Consensus 256 ~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 256 DALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHT-----------------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999887654
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.3e-13 Score=105.73 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=225.5
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc------hHHHHHHHHHhcCChhHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY------TYNVWMRALAAVNDISGA 75 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a 75 (353)
.|+|.++|-+|.+.+. -+..+.-+|.+.|.+.|..+.|+.+.+.+.++ ||.. ....+.+-|...|-++.|
T Consensus 51 ~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 51 PDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5799999999998542 34556678889999999999999999998875 4432 345567778999999999
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHccCCHHHHHHHHH
Q 018582 76 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD----LSAYQFLITLYGQTGNLSEVYRIWR 151 (353)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (353)
+++|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+.+.|..++.
T Consensus 127 E~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 127 EDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999875 34455677899999999999999999999988776643 2356677777778899999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582 152 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 231 (353)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 231 (353)
+..+..++ ....--.+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....+.++.+... .
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 99887654 34444567788999999999999999999998887888899999999999999999999999988643 4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh---cCChhhHHHHHHHHHhcC
Q 018582 232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 303 (353)
...-..+.+.-....-.+.|..++.+-+... |+...+..++..-.. .|...+....++.|....
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRK--------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--------CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 4444455555555556677777777777665 999999999986543 344666666777776543
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.3e-14 Score=122.76 Aligned_cols=289 Identities=15% Similarity=0.069 Sum_probs=173.6
Q ss_pred CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 018582 36 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERA 114 (353)
Q Consensus 36 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (353)
+..+|+..|.+...+ +.-+......+.++|...+++++|.++|+.+.+..+. .-+..+|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345677777775443 2333345556667777777777777777777664211 1234455444433221 112222
Q ss_pred H-HHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582 115 L-KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 193 (353)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (353)
+ +.+.+..+ -.+.+|.++.+.|.-.++.+.|++.|++..+..+ -..++|+.+..-+.....+|.|...|+..+...+
T Consensus 409 Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 22222222 2456777777777777777777777777665432 2556777777777777777777777777664432
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH
Q 018582 194 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 273 (353)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (353)
. +-..|-.+.-.|.+.++++.|.-.|+...+.++. +.+....+...+.+.|+.++|+++++++..... -|+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-------kn~ 557 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-------KNP 557 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-------CCc
Confidence 2 3334445566677777777777777777665432 445555666666777777777777777776652 133
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582 274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE 341 (353)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~ 341 (353)
..--..+..+...++.++|+..++++++.-| .+...|..+...|-+.|+...++...-.+.++.|..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 3333344455566777777777777777666 666777777777777777666666655555555543
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1e-14 Score=123.48 Aligned_cols=286 Identities=13% Similarity=0.048 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCC--CCCCcchHHHHHHHHHhcCChhHHHHHH-
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAERVI- 79 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~- 79 (353)
++|...|..+...-. .+..+...+..+|.+.+++++|..+|+...+.. .--+...|.+.+.-+-. +-++..+
T Consensus 336 ~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 678999999665432 344666778899999999999999999998752 12256678877754422 2233333
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582 80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 159 (353)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (353)
+.+... .+....+|.++.++|.-+++.+.|++.|++..+..+. ...+|+.+..-+.....+|.|...|+......+
T Consensus 411 q~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~- 486 (638)
T KOG1126|consen 411 QDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP- 486 (638)
T ss_pred HHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-
Confidence 334444 5677889999999999999999999999999886443 788999999999999999999999998754322
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
.+-..|-.+...|.+.++++.|+-.|++..+-++. +.+....+...+-+.|+.++|++++++......+ |+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 12235666788999999999999999999988755 7888888899999999999999999999876544 555555677
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 307 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 307 (353)
..+...+++++|+..++++.+.- |+ ...+..+...|.+.|+.+.|..-|--+.+.+|++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 78888999999999999999974 65 56778888899999999999999999998888544
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=6.7e-13 Score=106.12 Aligned_cols=290 Identities=16% Similarity=0.105 Sum_probs=230.0
Q ss_pred HHHHHHh--cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 018582 27 LMTLYAK--TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 104 (353)
Q Consensus 27 ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (353)
+..+..+ .|+|.+|.++..+-.+.+ +.....|..-..+.-+.||.+.+-..+.+..+.. ..++..+.-+.......
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~ 165 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHh
Confidence 3444433 799999999999988776 2334456666678889999999999999999864 45677777888899999
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh-------HHHHHHHHHHhcCC
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-------SYLNMIQVLVNLKD 177 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~ 177 (353)
.|+.+.|..-++++.+.++. .........++|.+.|++..+..++..+.+.+.-.++. +|..+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999887766 67788999999999999999999999999988755543 67777776666666
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 257 (353)
.+.-...++..... ...++..-.+++.-+.++|+.++|.++..+..+++..|+ -...-.+.+-++...-++..++
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHH
Confidence 66666677765543 244567778889999999999999999999998877665 2233456677888888888888
Q ss_pred HHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHH
Q 018582 258 AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLK 333 (353)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~ 333 (353)
-.+... .++..+.+|...|.+.+.|.+|...|+...+.. |+..+|+.+..++.+.|+ .+.+...+-.
T Consensus 320 ~l~~h~-------~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 320 WLKQHP-------EDPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHhCC-------CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777641 456889999999999999999999999766655 799999999999999999 4455554433
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=5.6e-13 Score=107.51 Aligned_cols=308 Identities=13% Similarity=0.146 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHH--hcCCcchH-HHHHHHHHHC-------------------CCCCCcchHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYA--KTGHPEKI-PAIIQEMKAS-------------------SIMPDSYTYN 60 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~m~~~-------------------~~~p~~~~~~ 60 (353)
..+.-+++.|.+.|++.+...--.|++.-+ .+.++.-| .+.|-.|... -.+-+..+|.
T Consensus 132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s 211 (625)
T KOG4422|consen 132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVS 211 (625)
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHH
Confidence 456668888888887666666555554322 22222111 2222223221 1234567899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT 140 (353)
Q Consensus 61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (353)
++|.+.++-...+.|.++|++..... .+.+..+||.+|.+-.-.- ..+++.+|......||..|+|++++...+.
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 99999999999999999999888766 7888889998887654332 277888888888899999999999999999
Q ss_pred CCHHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH-HHHHHHHHHh----cCC----CCcHHHHHHHHHHH
Q 018582 141 GNLSE----VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG-AEKCFKEWES----GCA----TYDIRVTNVMIGAY 207 (353)
Q Consensus 141 ~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~li~~~ 207 (353)
|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. ..+ +.|...|...+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 98765 45677788889999999999999998888887755 4445555432 112 22556667777788
Q ss_pred HhcCChHHHHHHHHHHHhc----CCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHH
Q 018582 208 AKEGRLENAEELKERARRR----GADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 280 (353)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~----~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (353)
.+..+.+.|.++-.-+... -+.|+. .-|..+....++....+.....|+.|.-.- ..|+..+...++
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~------y~p~~~~m~~~l 440 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA------YFPHSQTMIHLL 440 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce------ecCCchhHHHHH
Confidence 8888888888776555421 123332 345667777788888888888888887664 338888888899
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 281 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
++....|.++-.-++|..++..|...+.....-+...+++.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 99888899998888888888776544444444444444443
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2.4e-12 Score=102.98 Aligned_cols=287 Identities=13% Similarity=0.078 Sum_probs=228.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
++.+|+++...-.+.+- .....|..-..+--+.|+.+.+-..+.+..+.--.++...+-+..+.....|+.+.|..-..
T Consensus 99 ~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 99 DFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred cHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 36788888888777664 23345666667788899999999999999875224555566677788899999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHH
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYRIWRSL 153 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (353)
++.+. .+-+..+.....++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...++..
T Consensus 178 ~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 178 QLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 99987 4677888899999999999999999999999998876553 46777777777777777766677765
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 018582 154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK 233 (353)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 233 (353)
... .+-++..-.+++.-+.+.|+.++|.++..+..+.+..|+. . ..-.+.+-++.+.-.+..+...+.. +-++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 443 3345566778888999999999999999999988776651 1 1223456677777777777766542 33557
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.+..|...|.+++.|.+|.+.|+..++.+ |+..+|+.+..++.+.|++..|..+.++....-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 88899999999999999999999998887 9999999999999999999999999998775433
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.4e-12 Score=114.35 Aligned_cols=316 Identities=13% Similarity=0.102 Sum_probs=242.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
++++|.+++.++.+... .....|..|...|-+.|+.++++..+-..... -+-|...|..+.....+.|+++.|.-.|.
T Consensus 154 ~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 46889999999998774 67788999999999999999998877544332 24456788888888999999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY----QFLITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
+.++. .+++...+-.-...|-+.|+...|...|.++....++.|..-+ ..+++.+...++-+.|.+.++.....
T Consensus 232 rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99997 6788887778889999999999999999999887664333322 33456677778778898888877653
Q ss_pred -CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHHHH
Q 018582 157 -FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC---------------------------ATYDIRVTNVMIGAYA 208 (353)
Q Consensus 157 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li~~~~ 208 (353)
+-..+...++.++..+.+...++.+......+.... ..++..+. .+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence 223455677888888999999999888877766511 22233331 2223334
Q ss_pred hcCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc
Q 018582 209 KEGRLENAEELKERARRRG--ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE 286 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (353)
.....+....+..-+.+.. +.-+...|.-+..+|...|.+..|+.+|..+..... .-+...|..+.++|...
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~------~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG------YQNAFVWYKLARCYMEL 462 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc------ccchhhhHHHHHHHHHH
Confidence 4444445555555555554 333456788889999999999999999999998752 24577899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 287 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
|..++|.+.++.++...| .+...-.+|...+-+.|+...++
T Consensus 463 ~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred hhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHH
Confidence 999999999999999998 88999999999999999965544
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.2e-12 Score=104.12 Aligned_cols=289 Identities=17% Similarity=0.105 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI--MPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
+++++=.+.....|.+.+...-+....+.-...++++|..+|+++.+... --|.++|..++-.-.... .+..+.
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s----kLs~LA 319 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS----KLSYLA 319 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH----HHHHHH
Confidence 34445555555566533333333334444456677777777777776520 024456665553322111 111111
Q ss_pred H-HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582 81 E-MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 159 (353)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (353)
+ .... .+--+.|+..+.+.|+-.++.++|...|++..+.++. ...+|+.+.+-|....+...|.+-++...+..+
T Consensus 320 ~~v~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p- 395 (559)
T KOG1155|consen 320 QNVSNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP- 395 (559)
T ss_pred HHHHHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-
Confidence 1 1111 2333456667788888899999999999999988765 677999999999999999999999999988765
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
.|-..|-.+.++|.-.+.+.-|+-.|++.....+ .|.+.|.+|.++|.+.++.++|++.|.+....|- .+...+..+.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 4788999999999999999999999999998764 4999999999999999999999999999988763 2568899999
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
..|-+.++..+|..+|.+-++.-. ..+...| ......-|..-+.+.+++++|..........
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~-~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSE-LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999999999999999988776320 0000113 2334444666778899999988766655543
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.9e-12 Score=103.62 Aligned_cols=307 Identities=14% Similarity=0.119 Sum_probs=215.5
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCCH
Q 018582 30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLF 108 (353)
Q Consensus 30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 108 (353)
++-...+.++++.-.......|++-+...-+....+.-...|+++|+.+|+++.+..+. -.|..+|..++-.-.....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 33444455566666666666665444443344444455666777777777777765311 11344554444332221111
Q ss_pred H-HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582 109 E-KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187 (353)
Q Consensus 109 ~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (353)
. -|..+++ + ... -+.|+.++.+-|.-.++.++|...|++..+-++. ....|+.+.+-|....+...|.+-++.
T Consensus 316 s~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1 1111111 1 111 2336777778888899999999999999887653 567899999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 018582 188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG 267 (353)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (353)
.++-++. |-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|++.|.+....|-
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d---- 463 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD---- 463 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc----
Confidence 9998744 99999999999999999999999999998863 33789999999999999999999999999998862
Q ss_pred CCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh----cCCC-C-ChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582 268 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK----AVDD-L-GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE 341 (353)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~ 341 (353)
.+...+..|...|-+.++.++|...+++.++ .|.. | ...+..-|..-+.+.+++.++-.-.+......+..
T Consensus 464 ---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 464 ---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred ---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 4568899999999999999999999988766 2331 2 22333446677788888777666555555446666
Q ss_pred hHHHHHHHHh
Q 018582 342 ASKKLLEAIC 351 (353)
Q Consensus 342 ~~~~~l~~~c 351 (353)
.-...|++-|
T Consensus 541 eeak~LlRei 550 (559)
T KOG1155|consen 541 EEAKALLREI 550 (559)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=1.4e-12 Score=116.22 Aligned_cols=233 Identities=10% Similarity=0.011 Sum_probs=166.6
Q ss_pred CCchhHHHHHHHHHh-----cCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 018582 19 FSSMPFNSLMTLYAK-----TGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAA---------VNDISGAERVIEEMK 83 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 83 (353)
.+...|...+.+-.. .+.+++|.+.|++..+. .|+. ..|..+..++.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 566666666665321 35688999999988875 3543 455555544432 244788999999988
Q ss_pred HcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 163 (353)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (353)
+. .+.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|+..+++..+..+.. ..
T Consensus 332 ~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~ 407 (553)
T PRK12370 332 EL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AA 407 (553)
T ss_pred hc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hh
Confidence 86 4667778888888888999999999999998887654 56778888888999999999999999988776542 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYY 242 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 242 (353)
.+...+..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 333344456668889999999988876543335556777888888899999999999887654 333 34445555666
Q ss_pred HccCChHHHHHHHHHHHHc
Q 018582 243 LRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~ 261 (353)
...| +.|...++.+.+.
T Consensus 486 ~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 486 CQNS--ERALPTIREFLES 502 (553)
T ss_pred hccH--HHHHHHHHHHHHH
Confidence 7766 4777777776664
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=7.2e-12 Score=111.65 Aligned_cols=265 Identities=12% Similarity=0.046 Sum_probs=186.1
Q ss_pred CCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 018582 54 PDSYTYNVWMRALAA-----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE---------AGLFEKAERALKELE 119 (353)
Q Consensus 54 p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 119 (353)
.+...|...+++-.. .+++++|...|++..+. .+.+...|..+..++.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 344556666665322 23467899999999986 34456666666655542 345889999999998
Q ss_pred HccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHH
Q 018582 120 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 199 (353)
Q Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (353)
+..+. +..++..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|...+++..+..+. +...
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 87665 778888888899999999999999999988765 35567888889999999999999999999987654 3333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHH
Q 018582 200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRT 278 (353)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 278 (353)
+..++..+...|++++|...+++......+-+...+..+...+...|++++|...+.++.... |+ ....+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--------~~~~~~~~~ 480 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--------ITGLIAVNL 480 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--------chhHHHHHH
Confidence 444455566789999999999998765322244557778888889999999999999877654 54 344555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhhHHHHHHHHHcCCC-hHHHHHHHHhC
Q 018582 279 FMRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTYAAAGRT-SPVMLRRLKME 335 (353)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~-~~~~~~~m~~~ 335 (353)
+...|...| +.|...++.+.+..- .+....+ +...|.-.|+. ...+++.+.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHHHHhhcc
Confidence 555667777 477777777665322 1222222 44445555663 23334555444
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.2e-12 Score=113.89 Aligned_cols=295 Identities=14% Similarity=0.146 Sum_probs=217.3
Q ss_pred HHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC---CCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 12 MKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS---SIMPDSY------TYNVWMRALAAVNDISGAERVIEEM 82 (353)
Q Consensus 12 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~ 82 (353)
+...+-++.+...|.+...+...|++.+|...|...... ...++.. +-..+.++.-..++++.|.+.|..+
T Consensus 443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I 522 (1018)
T KOG2002|consen 443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI 522 (1018)
T ss_pred HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334444466677888888888888888888888887654 1223321 2233455566677888888888888
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCC
Q 018582 83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTA 161 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 161 (353)
.+. .+-=+..|-.++......+...+|...+.......- .++.+++.+...+.+...|..|.+-|....+. ...+|
T Consensus 523 lke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 523 LKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 885 333344555555444556778888888888866433 36677888888888888898888877776554 23356
Q ss_pred hhHHHHHHHHHHh------------cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 018582 162 NISYLNMIQVLVN------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD 229 (353)
Q Consensus 162 ~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (353)
.++...|.+.|.. .+..++|.++|.++++..+. |...-|.+.-.++..|++.+|..+|.++.+...
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~- 677 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS- 677 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-
Confidence 6666666665543 24567899999999988755 888889999999999999999999999998743
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 018582 230 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 309 (353)
Q Consensus 230 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 309 (353)
-...+|..+...|...|++..|+++|+...+.-.+ ..+..+...|.+++.+.|.+.+|.+.+.......|.....
T Consensus 678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~-----~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK-----KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 25568889999999999999999999998777421 2568889999999999999999999998888888744455
Q ss_pred hhHHHHH
Q 018582 310 VFEPLIR 316 (353)
Q Consensus 310 ~~~~l~~ 316 (353)
.||..+.
T Consensus 753 ~FN~a~v 759 (1018)
T KOG2002|consen 753 KFNLALV 759 (1018)
T ss_pred HhHHHHH
Confidence 5555443
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.59 E-value=4e-12 Score=101.02 Aligned_cols=202 Identities=15% Similarity=0.066 Sum_probs=160.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
....+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++..+..+. +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 3456777788888899999999999988875 4556777788888899999999999999988776544 566778888
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 213 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (353)
..+...|++++|.+.+++....... .....+..+..++...|++++|...+.+.....+. +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 8888999999999999988764322 23346667788888999999999999998876533 567788888899999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988876 3445666777778888889999999888877654
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=9.3e-12 Score=98.92 Aligned_cols=204 Identities=21% Similarity=0.159 Sum_probs=159.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM 168 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (353)
......+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.+++..+..+ .+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence 344567778888999999999999999988776543 567788888899999999999999998887654 355677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582 169 IQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 247 (353)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 247 (353)
...+...|++++|.+.+++...... ......+..+...+...|++++|...+.+..+... .+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence 8888899999999999999876432 22345667778888889999999999988887632 245677788888888999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
+++|...+++..+.. + .+...+..+...+...|+.+.|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTY-N------QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhC-C------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999998888763 1 45666667778888888999988888776553
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.2e-11 Score=100.75 Aligned_cols=293 Identities=10% Similarity=-0.006 Sum_probs=232.8
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 018582 53 MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF 132 (353)
Q Consensus 53 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 132 (353)
.-+.........-|...+++.+..++.+.+.+. .+++...+..-|.++...|+..+-..+=.++.+.-|. ...+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence 334555566666788889999999999999997 6888888888888999999998888888888876554 6789999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582 133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 212 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (353)
+.--|...|+.++|.+.|.+....... -...|......|+-.|..|.|...+....+.-+. ....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhcc
Confidence 999999999999999999987655432 2457888999999999999999999887653211 11112234456888999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582 213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 292 (353)
Q Consensus 213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 292 (353)
++.|.+.|.+..... +-|+...+.+.-.....+.+.+|..+|+..+..-.........-..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999988752 3466777777777778899999999999987431110000112356789999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582 293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICV 352 (353)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 352 (353)
...+++.+...+ .+..++.++.-.|...|+...++-..-+...+.|+..+..-+++.|.
T Consensus 475 I~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 999999999999 99999999999999999988888777888999999988887777664
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.3e-11 Score=100.66 Aligned_cols=279 Identities=18% Similarity=0.167 Sum_probs=209.8
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCCcchHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 018582 30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYN--VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 107 (353)
Q Consensus 30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (353)
.+.++|+++.|++++.-..+..-+.-...-+ +.++.+....++..|.+.-+..... ..-+......-.+.....|+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCceeeecCc
Confidence 4778899999999988877653222222222 2233333345677888777766665 34444444444455556799
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582 108 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187 (353)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (353)
+++|.+.+++.....-.-....|| +.-.+...|+.++|++.|-++...- ..+..+...+.+.|....+...|.+++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999987643221222222 3335677899999999998875542 24566777888999999999999999988
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 018582 188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG 267 (353)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (353)
.... ++.|+.+.+.|...|-+.|+-.+|++.+-+--.. ++-+..+..-|...|....-+++++.+|++..-..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq----- 656 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ----- 656 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-----
Confidence 7765 3558899999999999999999999987665443 45578888888889999999999999999987654
Q ss_pred CCcccHHHHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 268 KWVPSSETIRTFMRH-FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 268 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
|+..-|..++.. +.+.|+++.|..+++.+...-| .|..+...|++.+...|-
T Consensus 657 ---p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 ---PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ---ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhccccc
Confidence 999999988875 5678999999999999988887 899999999999988887
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=2.1e-12 Score=100.68 Aligned_cols=232 Identities=13% Similarity=0.093 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (353)
+.+.++|.+.|-+.+|.+.++...+. .|-..||-.|-..|.+..++..|+.++.+-.+.-+. |+....-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence 44666777777777777777766663 466666667777777777777777777766654222 44444455566666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 018582 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 219 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 219 (353)
.++.++|.++|+...+..+ .+......+...|.-.++++.|...|+++.+.|.. +...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 6777777777776665543 34555555566666667777777777777777654 666777776666667777777777
Q ss_pred HHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHH
Q 018582 220 KERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 297 (353)
Q Consensus 220 ~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (353)
|.+....--.|+ ...|-.+.......||+..|.+.|+-.+.++ ..+...++.|...-.+.|++++|..+++
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-------~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-------AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-------cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 666654322233 2345555555666677777777777766665 1235667777666677777777777777
Q ss_pred HHHhcCC
Q 018582 298 ILKKAVD 304 (353)
Q Consensus 298 ~~~~~~~ 304 (353)
......|
T Consensus 454 ~A~s~~P 460 (478)
T KOG1129|consen 454 AAKSVMP 460 (478)
T ss_pred HhhhhCc
Confidence 6666554
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=1.3e-10 Score=102.35 Aligned_cols=307 Identities=13% Similarity=0.081 Sum_probs=235.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 107 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (353)
.+...-.|+.++|.+++.+..+.. +-+...|..|...|-+.|+.+++...+-.+-.. .+-|...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhccc
Confidence 334444599999999999999864 567889999999999999999999988777765 57788999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChhHHHH
Q 018582 108 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDLPGAEK 183 (353)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~ 183 (353)
+++|.-.|.+.++..+. +...+-.-+..|.+.|+...|.+.|.++....+..|.. .-..+++.+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999987665 55555566788999999999999999998875532322 23345677778888889999
Q ss_pred HHHHHHhc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH--------------------------H
Q 018582 184 CFKEWESG-CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW--------------------------E 236 (353)
Q Consensus 184 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------------------------~ 236 (353)
.+...... +-..+...++.++..|.+...++.+......+......+|..-| -
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88887752 22335667889999999999999999988887762222222111 1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
.+.-++.+....+....+.......... ..-+...|.-+..++...|++++|..++..+.......+...|-.+..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~----~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVW----VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCC----hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 2333445556666666666666666643 123577899999999999999999999999998777678889999999
Q ss_pred HHHHcCCChHHHHHHHHhCCCccCHh
Q 018582 317 TYAAAGRTSPVMLRRLKMEKVEVSEA 342 (353)
Q Consensus 317 ~~~~~g~~~~~~~~~m~~~~~~p~~~ 342 (353)
+|...|....|+.-.-+...+.|+..
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 99999997777754445555566543
No 51
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=6.6e-10 Score=94.77 Aligned_cols=319 Identities=16% Similarity=0.176 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 82 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 82 (353)
+-|+.||....+--. .+...|......=-..|..+....+|++.... ++-....|-......-..|++..|..++..+
T Consensus 533 ~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 533 ECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 344555555544321 34455666665555567777777777777664 3444445555566666778888888888888
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh
Q 018582 83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 162 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 162 (353)
.+. .+.+...|-..+.......+++.|..+|.+.... .|+...|..-+..---.++.++|++++++..+..+ .-.
T Consensus 611 f~~--~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~ 685 (913)
T KOG0495|consen 611 FEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFH 685 (913)
T ss_pred HHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chH
Confidence 776 4556677777788888888888888888877653 45666666666666667778888888877766533 233
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 018582 163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242 (353)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 242 (353)
..|..+.+.+-+.++.+.|...|..-.+.. +..+..|-.|...--+.|.+-.|..++++..-++++ +...|-..|+.-
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~E 763 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRME 763 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHH
Confidence 466777777778888888887777766553 335566777777777778888888888887776544 677888888888
Q ss_pred HccCChHHHHHHHHHHHHcCCCCC-----------------------CCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582 243 LRNGDMKLAVDCLEKAIDTGRGDG-----------------------GKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (353)
.+.|..+.|..+..+.++.-.... .++.-|+.....+...|....+++.|.+.|.+.
T Consensus 764 lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777666531111 014557777788888899999999999999999
Q ss_pred HhcCCCCChhhhHHHHHHHHHcCCC--hHHHHHH
Q 018582 300 KKAVDDLGVEVFEPLIRTYAAAGRT--SPVMLRR 331 (353)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~ 331 (353)
.+.++ .+-.+|..+..-+.++|.. ...++..
T Consensus 844 vk~d~-d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 844 VKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred HccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999 8899999999999999973 3344443
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.5e-11 Score=97.75 Aligned_cols=317 Identities=14% Similarity=0.093 Sum_probs=217.3
Q ss_pred hHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChhHHHH--
Q 018582 2 TEKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAER-- 77 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~-- 77 (353)
+++|++.+....+.. || +..|.....+|...|+|+++.+--.+..+ +.|+- ..+..-.+++-+.|++++|+.
T Consensus 131 Y~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 131 YDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred HHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 688999999988865 67 77888899999999999999888877776 34543 244444555555565555432
Q ss_pred --------------------HHHH---------HHH-cCCCCCcHHHHHHHHHHH-------------------------
Q 018582 78 --------------------VIEE---------MKR-DGRVAADWTTFSNLASIY------------------------- 102 (353)
Q Consensus 78 --------------------~~~~---------~~~-~~~~~~~~~~~~~l~~~~------------------------- 102 (353)
++.. +.+ +..+-|+.....+....+
T Consensus 207 tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~ 286 (606)
T KOG0547|consen 207 TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEA 286 (606)
T ss_pred hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHH
Confidence 1111 110 001222222222221111
Q ss_pred --------------------------------------------------HhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 018582 103 --------------------------------------------------VEAGLFEKAERALKELENRNAHRDLSAYQF 132 (353)
Q Consensus 103 --------------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 132 (353)
.-.|+.-.|..-|+..+...+.+ ...|-.
T Consensus 287 l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~ 365 (606)
T KOG0547|consen 287 LEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIK 365 (606)
T ss_pred HHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHH
Confidence 11233344444444444433322 223666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582 133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 212 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (353)
+...|....+.++....|+...+.++ -++.+|..-.+...-.+++++|..=|++.....+. +...|-.+..+..+.++
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHH
Confidence 66778888888888888888777665 36667777777777788899999999988887644 77788888888888999
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCC-CcccHHHHHHHHHHHHhcCChhh
Q 018582 213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK-WVPSSETIRTFMRHFEQEKDVDG 291 (353)
Q Consensus 213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 291 (353)
++++...|++..++ ++.-+..|+.....+...+++++|.+.|+..+..-...... +.+.+.+...++..-.+ +++..
T Consensus 444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~ 521 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHH
Confidence 99999999999887 45567899999999999999999999999998874110000 11223333444443344 89999
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
|.+++++..+.+| .....|..|...-.+.|+..+++
T Consensus 522 a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 522 AENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999 88899999999999999955443
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=1.6e-12 Score=113.73 Aligned_cols=274 Identities=14% Similarity=0.072 Sum_probs=173.2
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 018582 7 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 86 (353)
Q Consensus 7 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 86 (353)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.++...++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556667777777777777777777777777766 7777766666667777777777776666655443
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-hCCCCChhHH
Q 018582 87 RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-AFPNTANISY 165 (353)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ 165 (353)
.|...+|..|..+|...||+.. ++..++ ....+...+...|.-.....++..+.- .+.-||..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~-- 143 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE-- 143 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence 4666677777777777777665 222222 111223334444544444444443221 12233332
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-GRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 244 (353)
..+......|-++.+.+++..+...... .+... .++-.... ..+++.....+...+ .|++.+|..++..-..
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA 216 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence 3344445566677777776654432111 11111 13222222 223333333333332 5889999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
.|+.+.|..++.+|.+.|.+ .+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 217 ag~~d~Ak~ll~emke~gfp------ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFP------IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCC------cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999954 677777777766 78888888999999999999999999988888888655
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=4.8e-10 Score=99.54 Aligned_cols=305 Identities=13% Similarity=0.098 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM--PDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
..++.++...-..+. .++++.+.|.+.|.-.|+++.++++...+...... .-...|-.+.+++-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345555555544432 57788888999999999999999998888765311 123457788899999999999999998
Q ss_pred HHHHcCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHH
Q 018582 81 EMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG----NLSEVYRIWRSLR 154 (353)
Q Consensus 81 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 154 (353)
+..+.. ++ ...+..|.+.|.+.|+++.+...|+.+....+. +..+...|...|...+ ..+.|..++.+..
T Consensus 332 ~s~k~~---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 332 ESLKAD---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHccC---CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 888743 33 334456888999999999999999998776543 5667777777777765 4466666666665
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH----hcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---C
Q 018582 155 LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE----SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR---G 227 (353)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 227 (353)
...+ .|...|..+...+....-+.. +..|.... ..+..+.+...|.+...+...|++++|...|...... .
T Consensus 408 ~~~~-~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQTP-VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hccc-ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 5543 466777777776655544433 66665533 4444567788899999999999999999999887654 1
Q ss_pred CCCCh------hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582 228 ADPNA------KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILK 300 (353)
Q Consensus 228 ~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 300 (353)
..+|. .+--.+...+-..++++.|.+.|..+.+.. |. ...|-.++......++..+|...++.+.
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------PGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------chhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 22333 122334556667789999999999999886 65 4556666655556678889999999998
Q ss_pred hcCCCCChhhhHHHHHHHHHcCC
Q 018582 301 KAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
..+- .++..+..+...+.+...
T Consensus 558 ~~d~-~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 558 NIDS-SNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred hccc-CCcHHHHHHHHHHHhhhh
Confidence 8777 888888888888877666
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1.3e-11 Score=108.05 Aligned_cols=265 Identities=17% Similarity=0.194 Sum_probs=192.9
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582 42 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121 (353)
Q Consensus 42 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (353)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.... .+.+..+|+.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence 56778888999999999999999999999999999 999998877 8899999999999999999988877
Q ss_pred cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCcHHHH
Q 018582 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE-SGCATYDIRVT 200 (353)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~ 200 (353)
.|...+|+.|..+|...||... |+...+ -...+...+...|.-.....++..+. ..+.-||.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda--- 142 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA--- 142 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---
Confidence 5778899999999999999876 332222 12234445556666666556665543 22233443
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279 (353)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (353)
...+......|-++.+.+++..+...... . ++..+++-+.... .+++-..+-+.... + |+..++..+
T Consensus 143 ~n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e-~--------~~s~~l~a~ 210 (1088)
T KOG4318|consen 143 ENAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE-A--------PTSETLHAV 210 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc-C--------CChHHHHHH
Confidence 23444556667788888888766532111 1 1112344444433 34444444444443 4 999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHH
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLL 347 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l 347 (353)
+.+-...|+.+.|..++.+|++.|.+....-|-.|+-+ ...-...+.+++-|+..|+.|+..|+.--
T Consensus 211 l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 211 LKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred HHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 99999999999999999999999997777777777766 32233667788999999999999996543
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=7.1e-12 Score=97.84 Aligned_cols=236 Identities=14% Similarity=0.153 Sum_probs=198.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH-HHHH
Q 018582 91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY-LNMI 169 (353)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 169 (353)
|+..-+.+..+|.+.|.+.+|.+.|+.-.+.. |-+.||..|-..|.+..++..|+.++.+-.+.- |..+|| ..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhH
Confidence 44444789999999999999999999987764 455588899999999999999999999887753 444554 5577
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582 170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 249 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 249 (353)
..+-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+..|+++++.|+. +...|+.+.-+|...++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 88888999999999999999876 447888888888888899999999999999999976 7899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--Ch
Q 018582 250 LAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TS 325 (353)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~ 325 (353)
-++..|.+....-.. |+ ..+|..+.......||+..|.+-|+-....++ .+...+|.|...-.+.|+ .+
T Consensus 376 ~~L~sf~RAlstat~------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQ------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhHHHHHHHHhhccC------cchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHH
Confidence 999999999887532 44 57888898889999999999999999999888 889999999999999999 44
Q ss_pred HHHHHHHHhCCCccCH
Q 018582 326 PVMLRRLKMEKVEVSE 341 (353)
Q Consensus 326 ~~~~~~m~~~~~~p~~ 341 (353)
.+++.. ...+.|+.
T Consensus 449 rsll~~--A~s~~P~m 462 (478)
T KOG1129|consen 449 RSLLNA--AKSVMPDM 462 (478)
T ss_pred HHHHHH--hhhhCccc
Confidence 455543 33445553
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=6.2e-14 Score=81.25 Aligned_cols=50 Identities=36% Similarity=0.622 Sum_probs=38.5
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA 68 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 68 (353)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777653
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.47 E-value=8.7e-11 Score=100.51 Aligned_cols=244 Identities=17% Similarity=0.134 Sum_probs=182.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHc-----cCC-
Q 018582 57 YTYNVWMRALAAVNDISGAERVIEEMKRD-----GRVAADWTTF-SNLASIYVEAGLFEKAERALKELENR-----NAH- 124 (353)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~- 124 (353)
.+...+...|...|+++.|..+++...+. |...|...+. +.+...|...+++++|..+|+++... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46667889999999999999999988774 2124444433 45888999999999999999998542 111
Q ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-CCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhc---CC
Q 018582 125 R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP-NTAN-ISYLNMIQVLVNLKDLPGAEKCFKEWESG---CA 193 (353)
Q Consensus 125 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 193 (353)
| -..+++.|..+|.+.|++++|...++...+. +. .|.. ..++.+...++..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 2456778888999999999999988875432 11 1222 24677788899999999999999875531 11
Q ss_pred CC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC--CCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 194 TY----DIRVTNVMIGAYAKEGRLENAEELKERARRR----GA--DPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 194 ~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+ -..+++.|...|...|++++|.++++..... +- .+. ...++.+...|.+.+.+..|.++|.+.....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2468899999999999999999999987643 11 222 3567888899999999999999998866654
Q ss_pred CCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 263 RGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 263 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
+..++..|+ ..+|..|...|.+.|+++.|.++.+.+..
T Consensus 440 -~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 -KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222223354 57899999999999999999999887764
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=2.2e-13 Score=78.95 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582 195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244 (353)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 244 (353)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888887764
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.3e-10 Score=92.65 Aligned_cols=240 Identities=16% Similarity=0.146 Sum_probs=171.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH------------------------------------HHHHccCCH
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI------------------------------------TLYGQTGNL 143 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~~~~ 143 (353)
.-|.+.|+++.|.++++-+.+..-..-..+-+.|- +.....|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 35889999999999988775543221111111110 011246788
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018582 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 223 (353)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (353)
++|.+.|++............| .+.-.+-..|++++|+..|-++...- ..+..+...+...|-...+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 8898888887665433222233 33445677899999999998876542 237778888889999999999999999887
Q ss_pred HhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 224 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 224 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
... ++.|+...+.|...|-+.|+-.+|.+++-+--.. ++.+..+..-|..-|....-++.+..+|++..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-------fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 765 5557888899999999999999999887665544 235678888888888888899999999998654
Q ss_pred CCCChhhhHHHHHHHHH-cCCChH--HHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582 304 DDLGVEVFEPLIRTYAA-AGRTSP--VMLRRLKMEKVEVSEASKKLLEAICV 352 (353)
Q Consensus 304 ~~~~~~~~~~l~~~~~~-~g~~~~--~~~~~m~~~~~~p~~~~~~~l~~~c~ 352 (353)
+.|+..-|..++..|.+ .|++.. .+++.. .+.+.-|.....+|.++|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCccchHHHHHHHHHhc
Confidence 33899999988877755 566444 444443 3446677888999999985
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.5e-10 Score=94.75 Aligned_cols=281 Identities=11% Similarity=0.015 Sum_probs=225.0
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
++...-.-.+-+...+++.+..++.+...+. .+++...+..-|.++...|+..+-..+=.++++. .|....+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 4444555566677889999999999999886 4778888888888999999999999988899987 677888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 179 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (353)
-.|.-.|..++|.+.|.+....... =...|-.....|.-.|..+.|+..+...-+--+. ...-+.-+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence 9999999999999999998664433 3458889999999999999999998876554221 1112233555688899999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCC----CChhhHHHHHHHHHccCChHHHHH
Q 018582 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR--GAD----PNAKTWEIFSDYYLRNGDMKLAVD 253 (353)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~----p~~~~~~~li~~~~~~~~~~~a~~ 253 (353)
.|.++|.+.....+. |+.+.+.+.-.....+.+.+|...|+..+.. .+. -...+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999999887644 8888888888888889999999999887621 111 134568889999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHH
Q 018582 254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPL 314 (353)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (353)
.++..+... .-+..++.++.-.|...|+++.|...|.+.....| .|..+-..|
T Consensus 477 ~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p-~n~~~~~lL 529 (611)
T KOG1173|consen 477 YYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP-DNIFISELL 529 (611)
T ss_pred HHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-ccHHHHHHH
Confidence 999999875 25788999999999999999999999999887775 444433333
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=2.5e-09 Score=91.33 Aligned_cols=305 Identities=15% Similarity=0.090 Sum_probs=216.6
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH----HCCCCCCcc--------------------
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMK----ASSIMPDSY-------------------- 57 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~-------------------- 57 (353)
++.|..+++..++ .++-+...|.+-...=-.+|+.+.+.++.++-. ..|+..+..
T Consensus 422 YenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 422 YENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 3566777777665 354566677666666666667666666655432 234433332
Q ss_pred -----------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 58 -----------------TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 58 -----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
||..-...|.+.+.++-|..+|....+. ++.+...|..+...--..|..+.-..+|++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3333444455555566666777776665 555666666666666667777777778877776
Q ss_pred ccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH
Q 018582 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT 200 (353)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (353)
.-+. ....|-.....+-..|+...|..++....+..+. +...|...+.....+..++.|..+|.+.... .|+..+|
T Consensus 579 ~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~ 654 (913)
T KOG0495|consen 579 QCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW 654 (913)
T ss_pred hCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh
Confidence 5443 5556666777777888888888888888777653 6678888888888888888998888887764 4566777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582 201 NVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279 (353)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (353)
.--+....-.++.++|.+++++.++. -|+ ...|..+.+.+-+.++.+.|.+.|..-.+.- +-....|..|
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-------P~~ipLWllL 725 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-------PNSIPLWLLL 725 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-------CCCchHHHHH
Confidence 77777777788889999998887775 334 4567777778888888888888776655442 2245677777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
...=-+.|.+-.|..++++.+-.+| .+...|...|+.-.+.|.
T Consensus 726 akleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCC
Confidence 7777788889999999999888888 888899999999888888
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=3.9e-09 Score=86.93 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+..|+++|+.-.+.. |+..+|++.|..=.+.+.++.|.++|++.+- +.|+..+|--..+-=.+.|++..+..+|+.
T Consensus 157 i~gaRqiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 157 IAGARQIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 456888888877654 8999999999999999999999999998876 458998888888888888999999999888
Q ss_pred HHHc-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582 82 MKRD-GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121 (353)
Q Consensus 82 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (353)
.++. |....+...+.+....-.++..++.|.-+|+-..+.
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7763 212222334444444444566666666666665543
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=7.2e-10 Score=90.81 Aligned_cols=233 Identities=13% Similarity=0.072 Sum_probs=152.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582 70 NDISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY 147 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (353)
+..+.++.-+.++.......|+ ...|..+...|.+.|+.++|...|++..+..+. +..+|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 4556677777777764322222 355777788888889999999888888876554 6788888888889999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582 148 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227 (353)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (353)
+.|++..+..+. +..++..+..++...|++++|.+.++...+..+. +. ........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 988888776543 4567777888888889999999999888876543 22 11122223345678889988887655432
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 018582 228 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 306 (353)
Q Consensus 228 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 306 (353)
.|+...+ . ......|+...+ +.+..+.+.... .....| ....|..+...+.+.|++++|...|++..+.++ +
T Consensus 196 -~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~-~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 196 -DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATD-NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred -CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2332222 2 222334555443 344444432100 000112 245788888889999999999999999988887 5
Q ss_pred ChhhhHH
Q 018582 307 GVEVFEP 313 (353)
Q Consensus 307 ~~~~~~~ 313 (353)
+..-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 5554444
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.42 E-value=3.3e-10 Score=97.02 Aligned_cols=241 Identities=20% Similarity=0.241 Sum_probs=179.5
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC
Q 018582 21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-----S-IMPDSYT-YNVWMRALAAVNDISGAERVIEEMKRD-----GRV 88 (353)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~ 88 (353)
..+...|...|...|+++.|..++.+..+. | ..|...+ .+.+...|...+++.+|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666889999999999999999998764 2 1233332 344667889999999999999998762 222
Q ss_pred CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--cC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHh---C
Q 018582 89 AA-DWTTFSNLASIYVEAGLFEKAERALKELEN---R--NA-HRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLA---F 157 (353)
Q Consensus 89 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 157 (353)
.| -..+++.|..+|.+.|++++|...++...+ . +. .|. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 23 345778889999999999999988887633 1 11 122 234677788899999999999999975442 2
Q ss_pred CCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-
Q 018582 158 PNTAN----ISYLNMIQVLVNLKDLPGAEKCFKEWESGC-------ATYDIRVTNVMIGAYAKEGRLENAEELKERARR- 225 (353)
Q Consensus 158 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 225 (353)
+.++. .+++.+...|...|++++|.+++++..+.. ..-....++.|...|.+.+++++|.++|.+-..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 33333 478999999999999999999999976421 122345678888999999999999999887442
Q ss_pred ---cCCC-CC-hhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 226 ---RGAD-PN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 226 ---~~~~-p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
.|+. |+ ..+|..|...|.+.|+++.|.++.+.....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2321 22 467899999999999999999998887644
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=1.3e-09 Score=94.46 Aligned_cols=284 Identities=12% Similarity=0.111 Sum_probs=199.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc--
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA-- 105 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 105 (353)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..++++ .|.|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999775543 3334456677888999999999999999999998 466666667777776333
Q ss_pred ---CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582 106 ---GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS-EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181 (353)
Q Consensus 106 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (353)
.+.+....+++++...-+. ..+...+.-.+.....+. .+..++..+...|+ | .+|+.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-P--slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-P--SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHcChhHHHHH
Confidence 2567788889888765433 223322222222222333 34455566667776 3 4667777777766666666
Q ss_pred HHHHHHHHhc----C----------CCCcH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHc
Q 018582 182 EKCFKEWESG----C----------ATYDI--RVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLR 244 (353)
Q Consensus 182 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 244 (353)
.+++...... + -+|.. .++.-+.+.|...|++++|++.+++..++ .|+ +..|..-...+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 6666665421 1 13344 34466678888999999999999999987 344 6788888899999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh------hh--HHHHH
Q 018582 245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE------VF--EPLIR 316 (353)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~ 316 (353)
.|++++|.+.++.....+. -|..+-+-.+..+.+.|+.++|.+++..+...+..|... .| .....
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~-------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDL-------ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred CCCHHHHHHHHHHHHhCCh-------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 9999999999999999872 456666667778889999999999999887765323222 22 45677
Q ss_pred HHHHcCCChHHH
Q 018582 317 TYAAAGRTSPVM 328 (353)
Q Consensus 317 ~~~~~g~~~~~~ 328 (353)
+|.+.|++..++
T Consensus 314 a~~r~~~~~~AL 325 (517)
T PF12569_consen 314 AYLRQGDYGLAL 325 (517)
T ss_pred HHHHHhhHHHHH
Confidence 889999866655
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=1.1e-09 Score=95.03 Aligned_cols=289 Identities=15% Similarity=0.112 Sum_probs=202.1
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHH-hc-----CChhHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA-AV-----NDISGA 75 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~-----~~~~~a 75 (353)
+++|++.++.-.. .+.............+.+.|+.++|..+|..+.+.+ |+...|...+..+. .. .+.+..
T Consensus 20 ~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 20 YEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred HHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 5788888877544 342334556777889999999999999999999976 77776665555444 22 356778
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 76 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE-KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
..+|+++... . |.......+.-.+.....+. .+...+..+...|++ + +|+.+-..|....+..-..+++....
T Consensus 97 ~~~y~~l~~~--y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 97 LELYDELAEK--Y-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHh--C-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 8899988775 3 54444434433333333343 345566666777764 3 67777777776666666666666654
Q ss_pred Hh----C----------CCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 018582 155 LA----F----------PNTANI--SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE 218 (353)
Q Consensus 155 ~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 218 (353)
.. + -.|... ++..+...|...|++++|.+++++.+...+. .+..|..-.+.+-..|++.+|.+
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 32 1 123332 4456678889999999999999999988644 57889899999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH--HHHHHHHHhcCChhhHHHHH
Q 018582 219 LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI--RTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 219 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~ 296 (353)
.++..+..... |-..-+..+..+.++|+.++|.+++....+.+..|.....--.-.| .....+|.+.|++..|++.|
T Consensus 250 ~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 250 AMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999987533 5556666778889999999999999999887743211110001122 44456899999999999877
Q ss_pred HHHHh
Q 018582 297 EILKK 301 (353)
Q Consensus 297 ~~~~~ 301 (353)
..+.+
T Consensus 329 ~~v~k 333 (517)
T PF12569_consen 329 HAVLK 333 (517)
T ss_pred HHHHH
Confidence 76654
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.9e-09 Score=80.52 Aligned_cols=200 Identities=13% Similarity=0.002 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 137 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (353)
+...+.-.|.+.|+...|..-+++.++. .+.+..++..+...|-+.|+.+.|.+.|++.....+. +..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 3445666788899999999999999887 5667788888999999999999999999998877655 677888888888
Q ss_pred HccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582 138 GQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 216 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (353)
|..|++++|...|++....- ..-...+|..+.-+..+.|+.+.|...|++..+..+. .....-.+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999998876652 1223457888888888999999999999998887654 555677788888889999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
...++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+.-
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999998887765 788888888888888899888887777776654
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=2.3e-09 Score=80.05 Aligned_cols=183 Identities=19% Similarity=0.132 Sum_probs=100.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 209 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (353)
...|.-.|...|+...|..-+++..+..+ .+..++..+...|.+.|+.+.|.+-|++..+..+. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 33344455556666666666655555543 23445555555566666666666666665555433 45555555666666
Q ss_pred cCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcC
Q 018582 210 EGRLENAEELKERARRRG-ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK 287 (353)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 287 (353)
.|++++|...|++....- ..--..+|..+.-+..+.|+++.|.+.|++.++.. |+ ......+.....+.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--------p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--------PQFPPALLELARLHYKAG 187 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--------cCCChHHHHHHHHHHhcc
Confidence 666666666666555421 11112455555555555666666666666666554 32 344555555555666
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 288 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
++-.|..+++.....+. ++....-..|+.--+.|+
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd 222 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhcc
Confidence 66666666665555555 555555555555555555
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=3.5e-09 Score=86.83 Aligned_cols=95 Identities=11% Similarity=-0.090 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 138 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (353)
|..+...+...|+.++|...|++..+. .+.+...|+.+...+...|++++|...|++..+..+. +..+|..+...+.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 444444455555555555555555553 2334455555555555555555555555555443332 3344444555555
Q ss_pred ccCCHHHHHHHHHHHHHh
Q 018582 139 QTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~ 156 (353)
..|++++|.+.|+...+.
T Consensus 144 ~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.5e-09 Score=84.14 Aligned_cols=310 Identities=12% Similarity=0.059 Sum_probs=164.3
Q ss_pred hcCCCCCchhHHHHHHHHHh--cCCcchHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 018582 14 ELNLGFSSMPFNSLMTLYAK--TGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA 90 (353)
Q Consensus 14 ~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 90 (353)
...++|...+...-+.++++ .++...|..++--+... -++-|.+....+..++...|+.++|...|++.... .+-
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy 264 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPD 264 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chh
Confidence 33454444444444544443 44555555555444333 25566777888888888888888888888888774 233
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 018582 91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ 170 (353)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (353)
+........-.+.+.|+.++...+...+....- -+...|-.-.......+++..|+.+-++..+... .+...|-.-..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~ 342 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGR 342 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccH
Confidence 333333344445567777777776666644211 1223333333444456667777766666555432 23344444455
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH-HHHH-ccCCh
Q 018582 171 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS-DYYL-RNGDM 248 (353)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~ 248 (353)
.+...++.++|.-.|+......+ .+...|..|+..|...|++.+|..+-+..... +.-+..+...+. ..|. ...--
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 66667777777777776665542 36667777777777777777766655544332 122333333331 1121 11223
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582 249 KLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 327 (353)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 327 (353)
++|.+++++.++.. |+ ....+.+...+...|..+++..+++.....- +|....+.|.+.+...+...++
T Consensus 421 EKAKkf~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 421 EKAKKFAEKSLKIN--------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred HHHHHHHHhhhccC--------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHHHHhhhHHHH
Confidence 44555555544443 43 3444455555555555555555555544322 4455555555555555444444
Q ss_pred HHHHHHhCCCcc
Q 018582 328 MLRRLKMEKVEV 339 (353)
Q Consensus 328 ~~~~m~~~~~~p 339 (353)
+-..-....+.|
T Consensus 491 m~~y~~ALr~dP 502 (564)
T KOG1174|consen 491 MEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHhcCc
Confidence 433333333333
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.8e-08 Score=80.55 Aligned_cols=279 Identities=11% Similarity=0.061 Sum_probs=212.0
Q ss_pred CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH
Q 018582 17 LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF 95 (353)
Q Consensus 17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 95 (353)
.+.|+.....+...+...|+..+|...|++.... .|+.. ......-.+.+.|+.+....+...+... ..-+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhh
Confidence 4456777889999999999999999999988764 34432 3333344456788888888888887765 33444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
..-........+++.|+.+-++.++.... ++..|-.-...+...|++++|.-.|+....-.+ -+...|..++.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhh
Confidence 55566667788999999999998876544 666777777888999999999999998766543 4778999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHH-HHHHh-cCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHH
Q 018582 176 KDLPGAEKCFKEWESGCATYDIRVTNVMI-GAYAK-EGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAV 252 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~ 252 (353)
|++.+|...-+...+.- +.+..+.+.+. ..+.- -..-++|.++++.-... .|+ ....+.+...|...|..+.++
T Consensus 382 ~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 99999988777755432 33555555442 22222 22457899999887765 454 345677778899999999999
Q ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHH
Q 018582 253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 313 (353)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (353)
.++++.+... ||....+.|.+.+...+.+++|...|......+| .+..+...
T Consensus 459 ~LLe~~L~~~--------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP-~~~~sl~G 510 (564)
T KOG1174|consen 459 KLLEKHLIIF--------PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP-KSKRTLRG 510 (564)
T ss_pred HHHHHHHhhc--------cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc-cchHHHHH
Confidence 9999999876 9999999999999999999999999999999888 56555443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=1e-07 Score=81.02 Aligned_cols=300 Identities=12% Similarity=0.001 Sum_probs=184.8
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHH
Q 018582 21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT---YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 97 (353)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 97 (353)
...|..+...+...|+.+.+...+....... +++... .......+...|++++|..++++..+. .+.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~ 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 4567777788888899999888777766542 223222 222334567889999999999999886 4555545442
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582 98 LASIYV----EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173 (353)
Q Consensus 98 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (353)
...+. ..+..+.+.+.+.... ...+........+...+...|++++|.+.+++..+..+ .+...+..+..++.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 22222 2455555555555421 11122344555666788999999999999999988764 35667888899999
Q ss_pred hcCChhHHHHHHHHHHhcCCC-CcH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCChhhH-H--HHHHHHHccC
Q 018582 174 NLKDLPGAEKCFKEWESGCAT-YDI--RVTNVMIGAYAKEGRLENAEELKERARRRGA-DPNAKTW-E--IFSDYYLRNG 246 (353)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~~ 246 (353)
..|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998875432 232 3455788899999999999999999864422 1112111 1 2233334444
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC------C--ChhhhHHHHHHH
Q 018582 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD------L--GVEVFEPLIRTY 318 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~ 318 (353)
....+.+. +.+.....+. ...............++...|+.+.|...++.+...... . ..........++
T Consensus 240 ~~~~~~~w-~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 240 HVDVGDRW-EDLADYAAWH-FPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CCChHHHH-HHHHHHHHhh-cCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 43333322 2222111000 000011222235677788999999999999988763321 1 122333344455
Q ss_pred HHcCCChHHH
Q 018582 319 AAAGRTSPVM 328 (353)
Q Consensus 319 ~~~g~~~~~~ 328 (353)
...|+++.++
T Consensus 318 ~~~g~~~~A~ 327 (355)
T cd05804 318 FAEGNYATAL 327 (355)
T ss_pred HHcCCHHHHH
Confidence 6777755543
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.8e-09 Score=87.21 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=181.8
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF 108 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (353)
..+.-.|+.-.|.+-|+........ +...|--+...|....+.++....|.+.... .+.|..+|..-.+.+.-.+++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHH
Confidence 3455578999999999999886422 2233777888899999999999999999997 567778888888888888999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
++|..=|++.....++ +...|-.+.-+..+.++++++...|++.+..-+ ..+..|+.....+...++++.|.+.|+..
T Consensus 411 e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999999887655 677788888888899999999999999988854 46678999999999999999999999998
Q ss_pred HhcCCC-------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 189 ESGCAT-------YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 189 ~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
....+. +.+.+.-+++..- -.+++..|..++++..+..++ ....|..|...-.+.|+.++|+++|++....
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 764322 1222222333322 348999999999999987544 4578999999999999999999999997765
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=1.1e-07 Score=80.73 Aligned_cols=270 Identities=12% Similarity=0.031 Sum_probs=169.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA----AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 103 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (353)
...+...|++++|.+.+++..+.. +.+...+.. ...+. ..+....+.+.+...... .+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE--NPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC--CCCcHHHHHHHHHHHH
Confidence 345677899999999999988753 333334442 22222 245555566655542121 3334455567778899
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CCh--hHHHHHHHHHHhcCChhH
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TAN--ISYLNMIQVLVNLKDLPG 180 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~ 180 (353)
..|++++|...+++..+..+. +...+..+...+...|++++|...+++.....+. |+. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999887654 6778888999999999999999999998765432 222 245578888999999999
Q ss_pred HHHHHHHHHhcCC-CCcHHHH-H--HHHHHHHhcCChHHHHHH--HHHHHhcCCCCChhhH--HHHHHHHHccCChHHHH
Q 018582 181 AEKCFKEWESGCA-TYDIRVT-N--VMIGAYAKEGRLENAEEL--KERARRRGADPNAKTW--EIFSDYYLRNGDMKLAV 252 (353)
Q Consensus 181 a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~~~~~~~~~~p~~~~~--~~li~~~~~~~~~~~a~ 252 (353)
|..++++.....+ .+..... + .++..+...|....+.++ +..............+ .....++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9999999864432 1222111 1 223333444543333333 2211111111111222 35667778899999999
Q ss_pred HHHHHHHHcCCCCC-CCCc-ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 253 DCLEKAIDTGRGDG-GKWV-PSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 253 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
..++.+........ .... ...........++...|+.+.|.+.+......
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999877532100 0000 01222223333567899999999999887663
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=1.1e-09 Score=88.43 Aligned_cols=251 Identities=17% Similarity=0.119 Sum_probs=138.3
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHH
Q 018582 31 YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 110 (353)
Q Consensus 31 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (353)
+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++... ..|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHH
Confidence 344577777765554 222111112334455667777777765433 333332 34555554444444433344445
Q ss_pred HHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 111 AERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 111 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
+..-+++.......+ +..........+...|++++|+++++.. .+.......+.++.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554444433222221 2222223334566677888887776532 345566667777888888888888888877
Q ss_pred hcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 018582 190 SGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 265 (353)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (353)
+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-- 232 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-- 232 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C--
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--
Confidence 653 22 233334443332 33577888888887654 456777777777788888888888888877765541
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhcCC
Q 018582 266 GGKWVPSSETIRTFMRHFEQEKDV-DGAEGFLEILKKAVD 304 (353)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~ 304 (353)
-++.+...++.+....|+. +.+.+.+.++....|
T Consensus 233 -----~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 233 -----NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -----CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred -----CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 3456666677777777776 556677777766554
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=2.6e-07 Score=80.82 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHH
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIR 277 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 277 (353)
.|......+.+.+..++|...+.+..... ......|......+...|.+++|.+.|......+ |+ +.+..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--------P~hv~s~~ 722 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--------PDHVPSMT 722 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--------CCCcHHHH
Confidence 34455566667777777777777666542 2244556666667778889999999999888876 54 67888
Q ss_pred HHHHHHHhcCChhhHHH--HHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 278 TFMRHFEQEKDVDGAEG--FLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 278 ~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
++..++.+.|+..-|.. ++..+.+.++ .+...|..|...+-+.|+...+.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHH
Confidence 99999999999888888 9999999999 99999999999999999955544
No 78
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=1.2e-06 Score=72.67 Aligned_cols=328 Identities=12% Similarity=0.091 Sum_probs=232.8
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChhHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
+..|+.+|++...-+. .+...|-.-+.+=.++..+..|..+++..... -|-+ ..|.-.+..=-..|++..|.++|+
T Consensus 89 ~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4679999999987664 67778888888889999999999999999874 3443 355556666667899999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP-- 158 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 158 (353)
+-.+ ..|+...|.+.|+.-.+...++.|..++++..- +.|++.+|-.....=.+.|....+..+|+...+.--
T Consensus 166 rW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 166 RWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 9988 689999999999999999999999999999865 458999999999988999999999999998766421
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHH--------HHHHHhcCCC
Q 018582 159 NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEEL--------KERARRRGAD 229 (353)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~--------~~~~~~~~~~ 229 (353)
..+...|.+...--.+...++.|.-+|+..+..-++. ....|......--+.|+....... |+.+...+ +
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 1223345555555566778899999999888764332 145565555555555654433332 44455543 3
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHH--------HHhcCChhhHHHHHHHH
Q 018582 230 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRH--------FEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 230 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--------~~~~~~~~~a~~~~~~~ 299 (353)
-|-.+|--.++.-...|+.+...++|++.+..- + |- ...|...|-. -....+.+.+.++++..
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-p------p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-P------PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C------chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 467788888888888899999999999999864 2 31 1223322222 13467888999999988
Q ss_pred HhcCCCCChhhhHHHHHHHHH----cCCChHHHHHHHHhCCCccCHhHHHH
Q 018582 300 KKAVDDLGVEVFEPLIRTYAA----AGRTSPVMLRRLKMEKVEVSEASKKL 346 (353)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~m~~~~~~p~~~~~~~ 346 (353)
++.=| ....|+..+=..|++ +.+...+-...=.+.|.-|...+|..
T Consensus 393 l~lIP-HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 393 LDLIP-HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred HhhcC-cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence 88555 555566555444443 33322221112234566777666543
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=3.7e-09 Score=85.51 Aligned_cols=241 Identities=13% Similarity=0.108 Sum_probs=162.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143 (353)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (353)
+-+.-.|++..++.-.+ ..... ...+......+.+++...|+.+.++ .++... ..|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 34445688888876655 22221 2233445567889999999877654 444333 366777776666655544555
Q ss_pred HHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 144 SEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 144 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
+.++.-+++....... .+..........+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5665555444333222 23333333345566789999999888652 3677778889999999999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 223 ARRRGADPNAKTWEIFSDYYL----RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 223 ~~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
|.+. ..| .+...+..++. -.+.+.+|..+|+++.+. +.+++.+.+.+..+....|++++|.+++++
T Consensus 157 ~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 157 MQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-------S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9875 333 44444555443 234699999999998776 237889999999999999999999999999
Q ss_pred HHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582 299 LKKAVDDLGVEVFEPLIRTYAAAGRTSPV 327 (353)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 327 (353)
..+.++ .++.+...++.+....|+..+.
T Consensus 227 al~~~~-~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 227 ALEKDP-NDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HCCC-C-CHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHhcc-CCHHHHHHHHHHHHHhCCChhH
Confidence 998888 7888888899999999997443
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=7.9e-07 Score=76.40 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 82 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 82 (353)
++|.+....-.+.++ .+.+.|..+.-.+....++++|++.|......+ +.|...|.-+.-.-++.|+++.....-...
T Consensus 58 ~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 58 EEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred HHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444333 455667777666666777777777777766643 334445554444445556666666655555
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHHH
Q 018582 83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-AHRDLSAYQFLI------TLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~ 155 (353)
.+. .+.....|..++.++.-.|+...|..++++..+.. ..|+...+.... ......|..++|.+.+.....
T Consensus 136 Lql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 136 LQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 554 34444555566666666666667766666665433 123433332221 122334444444444443222
Q ss_pred hCCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582 156 AFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 156 ~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
. + .|...+ .+-...+.+.++.++|..++..+....
T Consensus 214 ~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 214 Q-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred H-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 1 1 111111 223344555566666666666655543
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=4.7e-07 Score=71.97 Aligned_cols=311 Identities=10% Similarity=0.053 Sum_probs=227.8
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH-HH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF-SN 97 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ 97 (353)
++.-.--+...+...|++..|+.-|....+- .|+. .++-.-...|...|+-..|+.=+....+ .+||-..- ..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHH
Confidence 4444556677788889999999999888763 2332 2333444578888999999999999988 57875432 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCH--H------------HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDL--S------------AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 163 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (353)
-...+.+.|.+++|..=|+.+.++.+.... . .....+..+...|+...|++....+.+..+ -|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhH
Confidence 456678999999999999999887653211 1 122334556778999999999999988755 3677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh----HHHH-
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT----WEIF- 238 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~l- 238 (353)
.|..-..+|...|++..|..-++...+.... ++..+-.+-..+...|+.+.++...++-++. .||... |-.+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 7888889999999999999888888776533 7777778888899999999999999988875 455432 2111
Q ss_pred --------HHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582 239 --------SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 239 --------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (353)
+......++|.++++-.+..++..... .......+..+-.++...|++.+|++...++.+..+ .|..+
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~ 343 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHH
Confidence 123456788888998888888876210 001123455666778888999999999999999888 77888
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhCCCccCHhH
Q 018582 311 FEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 343 (353)
Q Consensus 311 ~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 343 (353)
+---..+|.-...+.+++-+.-....+.++...
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 888888888777788888777666666666543
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.3e-08 Score=84.34 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=194.3
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF 108 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (353)
.-+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+++..+. .+.|....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH
Confidence 34678899999999999988864 556789999999999999999999999999997 577788888999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHH-----------HHHHccCCHHHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcC
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLI-----------TLYGQTGNLSEVYRIWRSLRL-AFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 176 (353)
..|++.++.-+...++ |..+. ..+.....+....++|-++.. .+..+|......|.-.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999987654322 00000 111222234455555555544 444578888888888899999
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHHHHH
Q 018582 177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCL 255 (353)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 255 (353)
++++|...|+..+...+. |...||.|...++...+.++|+..|++.++. .|. +.....|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999988755 8999999999999999999999999999985 555 456667788899999999999998
Q ss_pred HHHHHcCCC---CCCCCcccHHHHHHHHHHHHhcCChhhHHHH
Q 018582 256 EKAIDTGRG---DGGKWVPSSETIRTFMRHFEQEKDVDGAEGF 295 (353)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 295 (353)
-..+..... +.....++..+|..|=.++.-.++.|.+.++
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 876654321 1111223456777776677777777655443
No 83
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=5.4e-07 Score=74.03 Aligned_cols=203 Identities=8% Similarity=0.026 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH--HHH
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL--SEV 146 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 146 (353)
+..++|+.+..++++. .+-+..+|+....++...| ++++++..++++....+. +..+|+.-...+.+.|+. +++
T Consensus 51 e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 3444444444444443 2233333333333333333 334444444444443332 333333333233333321 334
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CCh----HHHHHH
Q 018582 147 YRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE---GRL----ENAEEL 219 (353)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~a~~~ 219 (353)
+.+++++.+..+ -+-.+|+...-++...|+++++.+.++++++.++. |..+|+.....+.+. |.. ++....
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 444444444433 23444444444444444555555555555444432 334444333333222 111 234444
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh
Q 018582 220 KERARRRGADPNAKTWEIFSDYYLRN----GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 285 (353)
Q Consensus 220 ~~~~~~~~~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (353)
..++....+ -|...|+.+...+... +...+|.+.+.+..+.++ .+...+..|+..|+.
T Consensus 206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-------~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-------NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-------CcHHHHHHHHHHHHh
Confidence 444444322 2445555555555442 223445555555444331 345555556665554
No 84
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=3.1e-07 Score=75.39 Aligned_cols=215 Identities=9% Similarity=0.071 Sum_probs=161.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVN-DISGAERVIEEMKRDGRVAADWTTFSNLAS 100 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (353)
++..+-..+...++.++|+.+++++.+. .|+. .+|+..-.++...+ ++++++..++++.+. .+.+..+|+...-
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~ 114 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHH
Confidence 3455556667788999999999999885 3544 45666666666677 679999999999987 5677777876666
Q ss_pred HHHhcCCH--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---
Q 018582 101 IYVEAGLF--EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL--- 175 (353)
Q Consensus 101 ~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 175 (353)
.+.+.|+. ++++.+++++.+..+. +..+|+.....+...|+++++++.++++.+.++. |...|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc
Confidence 66666653 6788999899887665 8889999999999999999999999999998764 666777666666554
Q ss_pred CCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582 176 KDL----PGAEKCFKEWESGCATYDIRVTNVMIGAYAKE----GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 245 (353)
Q Consensus 176 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 245 (353)
|.. ++..+...++....+. |...|+-+...+... ++..+|...+.+....++ .+......|++.|+..
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhh
Confidence 223 4567777777776654 888888888888773 445678888888776543 3567778888888753
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.7e-08 Score=83.99 Aligned_cols=245 Identities=14% Similarity=0.091 Sum_probs=189.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH
Q 018582 66 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 145 (353)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (353)
+.+.|++.+|.-.|+..++. .|-+...|..|...-...++-..|+..+.+..+..+. +..+.-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 56789999999999999987 6788999999999999999999999999999887665 78888899999999999999
Q ss_pred HHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582 146 VYRIWRSLRLAFPNT--------ANISYLNMIQVLVNLKDLPGAEKCFKEWE-SGCATYDIRVTNVMIGAYAKEGRLENA 216 (353)
Q Consensus 146 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (353)
|++.++.-....++- +...-.. ..+.....+....++|-++. ..+..+|..++..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999876543210 0000000 11112223344555555554 444457888899999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHH
Q 018582 217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGF 295 (353)
Q Consensus 217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 295 (353)
.+.|+..+...+ -|..+||.|...++...+.++|+..|.+.++.. |+ +.....|.-+|...|.+++|.+.
T Consensus 450 iDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 450 VDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999998643 267899999999999999999999999999976 76 66778888899999999999998
Q ss_pred HHHHHhcCC---------CCChhhhHHHHHHHHHcCCC
Q 018582 296 LEILKKAVD---------DLGVEVFEPLIRTYAAAGRT 324 (353)
Q Consensus 296 ~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~ 324 (353)
|=.++.... .++...|.+|=.++.-.++.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 876655221 12345788877777766663
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.11 E-value=2e-07 Score=86.44 Aligned_cols=239 Identities=14% Similarity=0.133 Sum_probs=174.1
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 9 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-----SYTYNVWMRALAAVNDISGAERVIEEMK 83 (353)
Q Consensus 9 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 83 (353)
|++..... |.+...|-.-|....+.++.++|.++.++.... +.+. ...|.++++.-..-|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444443 245677888888888999999999999888764 2222 2356677776666777888888999888
Q ss_pred HcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-
Q 018582 84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN- 162 (353)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 162 (353)
+. -....+|..|...|.+.+.+++|-++++.|.+.-- -....|...+..+.+..+-++|..++.+..+.-++...
T Consensus 1525 qy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 84 34456778889999999999999999999866433 46678888889999988888899988887776443222
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh--hhHHHHHH
Q 018582 163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSD 240 (353)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~ 240 (353)
......+..-.+.|+.+.+..+|+......++ -...|+..|+.-.++|+.+.++.+|+++...++.|.. ..|...+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 23444556667889999999999988877654 6678999999999999999999999998888766543 34555555
Q ss_pred HHHccCChHHHHHH
Q 018582 241 YYLRNGDMKLAVDC 254 (353)
Q Consensus 241 ~~~~~~~~~~a~~~ 254 (353)
.=-..|+-+.+..+
T Consensus 1680 yEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHhcCchhhHHHH
Confidence 54555654444433
No 87
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.05 E-value=6.2e-06 Score=71.13 Aligned_cols=306 Identities=12% Similarity=0.100 Sum_probs=210.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (353)
.+.....-.+...|+-++|.+......+.. .-+.+.|..+.-.+-...++++|.+.|...... .+.|...+.-+.-.
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslL 118 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLL 118 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 344444444556788889988887776643 346667888877777889999999999999997 47788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChhHHHHHH------HHHHh
Q 018582 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMI------QVLVN 174 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~ 174 (353)
-++.|+++.....-..+.+..+. ....|..++.++.-.|+...|..++++..+.. ..|+...|.... .....
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888888775443 56678888899999999999999999987764 245555554332 34456
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH-HHHccCC------
Q 018582 175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD-YYLRNGD------ 247 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~------ 247 (353)
.|..+.|.+.+..-...-+. ....-..-...+.+.+++++|..++..+... .||..-|..... ++.+-.+
T Consensus 198 ~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 198 AGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred cccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 78888888887765543211 2223334567788999999999999999987 456555543332 2211111
Q ss_pred -----------------------------hHHHHHHHHHHHHcCCCCCCC------------------------------
Q 018582 248 -----------------------------MKLAVDCLEKAIDTGRGDGGK------------------------------ 268 (353)
Q Consensus 248 -----------------------------~~~a~~~~~~~~~~~~~~~~~------------------------------ 268 (353)
.+..-+++..+++.|+++--+
T Consensus 275 ~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 275 ALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred HHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccccc
Confidence 112223444444444443311
Q ss_pred ----------CcccHH--HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCC--hHHHHHHHHh
Q 018582 269 ----------WVPSSE--TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT--SPVMLRRLKM 334 (353)
Q Consensus 269 ----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~m~~ 334 (353)
-.|++. ++..++..+-+.|+++.|...++.....-| .-+..|..-.+.+..+|.. +.+.+.+-++
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-TliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-TLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 145544 344566778899999999999999888776 5667777888999999994 3444444443
Q ss_pred C
Q 018582 335 E 335 (353)
Q Consensus 335 ~ 335 (353)
.
T Consensus 434 l 434 (700)
T KOG1156|consen 434 L 434 (700)
T ss_pred c
Confidence 3
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=7.3e-06 Score=69.94 Aligned_cols=120 Identities=19% Similarity=0.131 Sum_probs=69.5
Q ss_pred HHHHHHHhcCChHHHHHHHH--------HHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH
Q 018582 202 VMIGAYAKEGRLENAEELKE--------RARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 273 (353)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (353)
.++......|+++.|.+++. .+.+.+..|- +...+...+.+.++-+.|..++......-.. ..+..
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~----~~t~s 454 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRK----QQTGS 454 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHH----hcccc
Confidence 33444445566666666655 3333333332 2333444444444444455555444433100 01222
Q ss_pred H----HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC-ChHHH
Q 018582 274 E----TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR-TSPVM 328 (353)
Q Consensus 274 ~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~ 328 (353)
. ++.-+...-.+.|+.++|..+++++.+.++ ++..+...++.+|++..- .++++
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d~eka~~l 513 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARLDPEKAESL 513 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcCHHHHHHH
Confidence 2 233333334578999999999999999999 999999999999998766 44444
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=1.2e-06 Score=81.51 Aligned_cols=232 Identities=13% Similarity=0.158 Sum_probs=156.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSA 129 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 129 (353)
+...|-..|..+.+.++.+.|.++.+++... +.+ -..+|.++++.-..-|.-+...++|+++.+.. -....
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 3456777777777888888888888877764 322 23466677777777777777778888776632 13446
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYA 208 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~ 208 (353)
|..|...|.+.+.+++|.++++.|.+.-- .....|...+..+.+.++-+.|..++.+..+.-++. ........++.-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 77777888888888888888888876632 455677778888888888888888888776643321 2333444455556
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHHHHhc
Q 018582 209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQE 286 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 286 (353)
+.|+.+.+..+|+.....-++ -...|+..|+.-.++|+.+.+..+|++.+..+.+ |. -..|...+..=-..
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~------~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS------IKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC------hhHhHHHHHHHHHHHHhc
Confidence 778888888888877765332 4567888888888888888888888888887743 32 34555556555556
Q ss_pred CChhhHHHHHHH
Q 018582 287 KDVDGAEGFLEI 298 (353)
Q Consensus 287 ~~~~~a~~~~~~ 298 (353)
|+-+.++.+=.+
T Consensus 1685 Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1685 GDEKNVEYVKAR 1696 (1710)
T ss_pred CchhhHHHHHHH
Confidence 665555444433
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=8.9e-08 Score=76.30 Aligned_cols=285 Identities=15% Similarity=0.107 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHH-HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhc--CC-------
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMT-LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV--ND------- 71 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~------- 71 (353)
+++|++++.++...+ |.....|.-+. +|.+..-++-+.+++.-..+. ++.++...|.......+. |+
T Consensus 167 YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 578999999988755 56666665543 456677777788888776664 233333333333222221 11
Q ss_pred --------------------------hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582 72 --------------------------ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR 125 (353)
Q Consensus 72 --------------------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (353)
-+.|++++--+.. +.|... -.|+-.|.+.+++.+|..+.+++.- .
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~---~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~P----t 314 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK---HIPEAR--LNLIIYYLNQNDVQEAISLCKDLDP----T 314 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---hChHhh--hhheeeecccccHHHHHHHHhhcCC----C
Confidence 1222222222222 223222 2566678889999999988877631 1
Q ss_pred CHHHHHHHHHHHHc-------cCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH
Q 018582 126 DLSAYQFLITLYGQ-------TGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI 197 (353)
Q Consensus 126 ~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (353)
++.-|-.-.-.+.. .....-|.+.|+-.-+.+..-|.. --.++..++.-..+++++.-.++.+..--..-|.
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~ 394 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD 394 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 22222111111222 223445566665544444333332 2345666666777889988888888776544344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH-
Q 018582 198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE-IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET- 275 (353)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 275 (353)
.-+ .+.++++..|++.+|.++|-++....++ |..+|. .+.++|.+++.++.|++++-++-.. .+..+
T Consensus 395 Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---------~e~fsL 463 (557)
T KOG3785|consen 395 FNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---------SERFSL 463 (557)
T ss_pred hhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---------hhHHHH
Confidence 444 4789999999999999999988766555 455554 4567888999999998876554332 23333
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582 276 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 311 (353)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (353)
...+..-|.+++.+--|-+.|+.+...+| ++.-|
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP--~pEnW 497 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILDP--TPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccCC--Ccccc
Confidence 34445578899999999999998877775 44444
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.1e-06 Score=77.08 Aligned_cols=287 Identities=15% Similarity=0.089 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 82 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 82 (353)
.++++.+++..+.+. .|+.+...+.-.|+..++.+.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+..
T Consensus 461 ~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 467888888887765 4555555556678888999999999999988765678888999999999999999999999887
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------c-------CCCCHHHHHHHH
Q 018582 83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR---------------------N-------AHRDLSAYQFLI 134 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~ 134 (353)
... .+.|......-+..-...++.++++.....+..- | +.-...++..+.
T Consensus 540 l~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 540 LEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 775 3343333333333334456666655544443210 0 000111222211
Q ss_pred HHHHccCCHHHHHHHHHHHHHhC--CCCCh------hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAF--PNTAN------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 206 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 206 (353)
......+ ..+..-.. +.... +.|+. ..|......+.+.++.++|...+.+..+.. ......|......
T Consensus 618 ~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 1111000 00000000 11111 12221 245566778888999999999998888765 4477788888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHH--HHHHHHHcCCCCCCCCcccHHHHHHHHHHHH
Q 018582 207 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVD--CLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 284 (353)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (353)
+...|..++|.+.|......++. ++....++...+.+.|+..-|.. ++.++.+.+. .+...|..+...+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-------~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-------LNHEAWYYLGEVFK 765 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHH
Confidence 88999999999999998876422 56788899999999999888888 9999999871 46899999999999
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 018582 285 QEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~ 304 (353)
+.|+.++|...|....+...
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HccchHHHHHHHHHHHhhcc
Confidence 99999999999999888665
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=3.3e-07 Score=72.87 Aligned_cols=187 Identities=15% Similarity=0.072 Sum_probs=125.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH--HH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SA 129 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 129 (353)
....+..+...+...|+++.|...|+++.... +.+. .++..+..++.+.|++++|...++++.+..+.... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44567777778888899999999999888752 3222 45677888888999999999999998776543222 24
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH
Q 018582 130 YQFLITLYGQT--------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 201 (353)
Q Consensus 130 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (353)
+..+...+... |++++|.+.|+.+....+. +...+..+..... .. ... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHHH
Confidence 44555555544 6788888888888776543 2222221111100 00 000 01122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 202 VMIGAYAKEGRLENAEELKERARRRGA-DP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+...|.+.|++++|...+.+..+... .| ....+..+..++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 566778899999999999999887532 12 34678889999999999999999998887764
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.7e-07 Score=71.94 Aligned_cols=287 Identities=12% Similarity=0.080 Sum_probs=158.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHH-HHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN-LASI 101 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~ 101 (353)
-+.+.+..+.+..+++.|++++..-.++. +.+....+.+..+|-...++..|-..|+++-. ..|...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence 46667777777777888887777666543 22566677777777777788888888877776 3455555532 3455
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLIT--LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 179 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (353)
+-+.+.+..|+++...|.+. ++...-..-+. .....+++..+..+.++....+ +..+.....-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 66777777777777776542 22211111122 2234566666666666553221 2233333344445677777
Q ss_pred HHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh-----------------hHHHHHHH
Q 018582 180 GAEKCFKEWES-GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK-----------------TWEIFSDY 241 (353)
Q Consensus 180 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------------~~~~li~~ 241 (353)
.|.+-|+...+ .|.. ....||..+..| +.|+++.|++...++.++|++..+. +...-+++
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 77777777665 3444 344566544433 4567777777777777777652221 11222333
Q ss_pred HHccCChHHHHHHH----HHHHHc--CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHH
Q 018582 242 YLRNGDMKLAVDCL----EKAIDT--GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI 315 (353)
Q Consensus 242 ~~~~~~~~~a~~~~----~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 315 (353)
....=+.+.|+++- +...+. +.+|......|+.|...+.-.- ..+++....+-+.-+.+.+| -...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 33333444444331 222221 3444433444555555443222 23345555555555555666 5566677777
Q ss_pred HHHHHcCC
Q 018582 316 RTYAAAGR 323 (353)
Q Consensus 316 ~~~~~~g~ 323 (353)
-.|++..-
T Consensus 318 llyCKNey 325 (459)
T KOG4340|consen 318 LLYCKNEY 325 (459)
T ss_pred HHHhhhHH
Confidence 77776554
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.98 E-value=5.6e-07 Score=82.39 Aligned_cols=246 Identities=13% Similarity=0.118 Sum_probs=166.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
+...+..|+..+...+++++|.++.+...+. .+-....|-.+...+.+.++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3457788888888999999999999977775 333344444455567777775555544 233
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (353)
.......++..+..+...|...+ -+...+..+..+|-+.|+.+++..+|+++.+..+. |+.+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 33334445544444455555533 24567888999999999999999999999998844 899999999999999 999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCC-------------CcccHHHHHHHHH
Q 018582 215 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK-------------WVPSSETIRTFMR 281 (353)
Q Consensus 215 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~ 281 (353)
+|.+++.+.... +...+++..+.++|.++.......... ..--..++..+-.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 999999887654 333445555555555555543110000 1122344555567
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH-HHHHhCCCccC
Q 018582 282 HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML-RRLKMEKVEVS 340 (353)
Q Consensus 282 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~m~~~~~~p~ 340 (353)
.|...++++++..+++.+.+..+ .|..+..-++.+|.+.=. ....+ +.++..|+.-+
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~~kY~-~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYKEKYK-DHSLLEDYLKMSDIGNN 289 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHcc-CcchHHHHHHHhccccC
Confidence 78888999999999999999999 788889999999984322 22222 34444555444
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=3.5e-07 Score=72.77 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=128.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh--H
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI--S 164 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 164 (353)
......+..+...+.+.|+++.|...|+++....+. | ...++..+..++...|++++|...++++.+..+..... +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445667778888889999999999999988775443 1 12466778888899999999999999988765532221 3
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH
Q 018582 165 YLNMIQVLVNL--------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE 236 (353)
Q Consensus 165 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 236 (353)
+..+..++... |+.+.|.+.++.+....+. +...+..+..... ... ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 44455555544 6677788888887766433 2222222211100 000 000 1112
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
.+...+.+.|++++|+..++...+.... .......+..+..++.+.|++++|...++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPD----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4556788899999999999999887511 01235788899999999999999999988876644
No 96
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.96 E-value=7.9e-06 Score=70.51 Aligned_cols=289 Identities=13% Similarity=0.152 Sum_probs=183.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcC----------CC
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDISGAERVIEEMKRDG----------RV 88 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~ 88 (353)
..|..+...|-..|+.+.|..+|++..+-..+-- ..+|......=.+..+++.|+++.+...... ..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3477778888888888888888888776433222 2345555555566677888888777765421 01
Q ss_pred CCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh
Q 018582 89 AAD------WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 162 (353)
Q Consensus 89 ~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 162 (353)
++. ..+|...++.--..|-++....+++++.+..+. ++...-.....+-...-++++.++|++-...-..|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 111 223344455555667777888888888765554 3333333333444556677888887765544344544
Q ss_pred h-HHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCC--h
Q 018582 163 I-SYLNMIQVLVN---LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA----KEGRLENAEELKERARRRGADPN--A 232 (353)
Q Consensus 163 ~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~p~--~ 232 (353)
. .|++.+.-+.+ ..+.+.|..+|++.++.. +|...- .+--.|+ +.|-...|..+|++.... +++. .
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-pp~~aK--tiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l 622 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-PPEHAK--TIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRL 622 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHH
Confidence 3 45554444332 347888999999998844 443221 1222233 457788888999886543 4433 2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH---HHHHHHHHhcCChhhHHHHHHHHHh-cCCCCCh
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI---RTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGV 308 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 308 (353)
..||..|.--+..=-+.....+|++.++.= |+...- -.+...=.+.|..+.|..++....+ .+|+.+.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~L--------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~ 694 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESL--------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhC--------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCCh
Confidence 467777765555545566677888887763 665443 3344455789999999999988776 5676788
Q ss_pred hhhHHHHHHHHHcCC
Q 018582 309 EVFEPLIRTYAAAGR 323 (353)
Q Consensus 309 ~~~~~l~~~~~~~g~ 323 (353)
..|.+.=.--.++|+
T Consensus 695 ~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 889999888899999
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=6e-07 Score=68.72 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=70.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HccCC--hHHH
Q 018582 175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY-LRNGD--MKLA 251 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~--~~~a 251 (353)
.++.+++...++...+..+. |...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34445555555555554433 5666666666666666666666666666654322 445555555542 44454 3666
Q ss_pred HHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 018582 252 VDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 309 (353)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 309 (353)
.+++++..+.+ | +...+..+...+.+.|++++|...|+++.+..+ |+..
T Consensus 130 ~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~-~~~~ 179 (198)
T PRK10370 130 REMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS-PRVN 179 (198)
T ss_pred HHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcc
Confidence 66666666655 3 345555566666666666666666666666655 4443
No 98
>PF12854 PPR_1: PPR repeat
Probab=98.92 E-value=9.6e-10 Score=57.16 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=20.0
Q ss_pred CCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 018582 16 NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM 47 (353)
Q Consensus 16 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 47 (353)
|++||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666655
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=2.2e-06 Score=77.67 Aligned_cols=183 Identities=11% Similarity=0.003 Sum_probs=126.9
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 018582 52 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ 131 (353)
Q Consensus 52 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (353)
.+.+...+..|.....+.|..++|..+++...+. .+-+......+...+.+.+++++|+...++.....+. +.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 4455777778888888888888888888888885 3445566677888888888888888888888877655 667777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582 132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 211 (353)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 211 (353)
.+..++.+.|++++|..+|+++...++ -+..++..+..++...|+.++|...|+...+.. .+....|+..+ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence 788888888888888888888877443 246677888888888888888888888877653 33445555433 3
Q ss_pred ChHHHHHHHHHHHhc----CCCCChhhHHHHHHHHHcc
Q 018582 212 RLENAEELKERARRR----GADPNAKTWEIFSDYYLRN 245 (353)
Q Consensus 212 ~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~ 245 (353)
++..-..+++++.-. |..........+|.-+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 344445556655432 2222334455555555543
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=4.9e-07 Score=78.68 Aligned_cols=216 Identities=15% Similarity=0.143 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 104 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 104 (353)
-.+...+...|-...|+.+|+++. .|.-++.+|...|+..+|..+..+-.+ .+|+...|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 455677888888899999888764 366788899999999999999888877 47999999999998888
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (353)
..-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+..+ .-..+|-....+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 87889999988875432 223333334557999999999998766544 3556888888888999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++....
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999887644 7889999999999999999999999999987633 55677777778889999999999999988764
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=7.5e-07 Score=69.51 Aligned_cols=279 Identities=12% Similarity=0.046 Sum_probs=142.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHH-HHHHHHhcCChhHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV-WMRALAAVNDISGAERVI 79 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~ 79 (353)
|++.|++++..-.++.. .+....+.|..+|-...++..|-+.|+++-.. .|...-|.. -...+-+.+.+..|+++.
T Consensus 25 ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34566666666666552 35556666666777777777777777776553 355444433 234455666677777776
Q ss_pred HHHHHcCCCCCcHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 018582 80 EEMKRDGRVAADWTTFSNLAS--IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF 157 (353)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (353)
..|... ++...-..-+. ..-..+++..+..++++....| +..+.+...-...+.|++++|.+-|+...+-+
T Consensus 102 ~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 102 FLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 655432 22221111122 2224566666666666654321 33344444444556777777777777665543
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH---------------------HHHHHHH-------HHHh
Q 018582 158 PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR---------------------VTNVMIG-------AYAK 209 (353)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~li~-------~~~~ 209 (353)
--.....|+..+. ..+.++.+.|.+...++...|+.-.+. .-+.++. .+.+
T Consensus 175 GyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 175 GYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred CCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 2233455654443 335566777777777776665442110 1122222 2234
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-ccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582 210 EGRLENAEELKERARRRGADPNAKTWEIFSDYYL-RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD 288 (353)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (353)
.|+++.|.+-+..|.-+. ..+....+.--.+.. ..+++-...+-+.-++..+. -...|+..++-.|++..-
T Consensus 254 ~~n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-------fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRA-EEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-------FPPETFANLLLLYCKNEY 325 (459)
T ss_pred cccHHHHHHHhhcCCCcc-cccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-------CChHHHHHHHHHHhhhHH
Confidence 455555555555543221 112222211111222 23345555555555555431 234566666667777666
Q ss_pred hhhHHHHHHH
Q 018582 289 VDGAEGFLEI 298 (353)
Q Consensus 289 ~~~a~~~~~~ 298 (353)
++.|-.++.+
T Consensus 326 f~lAADvLAE 335 (459)
T KOG4340|consen 326 FDLAADVLAE 335 (459)
T ss_pred HhHHHHHHhh
Confidence 6766666654
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=1.3e-06 Score=66.81 Aligned_cols=120 Identities=11% Similarity=0.121 Sum_probs=78.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHhcCC--hHHH
Q 018582 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA-YAKEGR--LENA 216 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~a 216 (353)
.++.+++...++......+ .+...|..+...|...|++++|...|++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666555544 35666777777777777777777777777766543 66666666665 355555 4677
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777766433 55666667777777777777777777777664
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.7e-05 Score=66.96 Aligned_cols=311 Identities=14% Similarity=0.036 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChhHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
++.|+..|..-..... ++...|+.=..+|...|++++|++=-.+-++ +.|+ ...|.....++.-.|++++|...|.
T Consensus 18 ~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred HHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 5678888888887775 4777888888899999999988876665555 4566 4578888888888999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHH------------------------HH------------------------H
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFE------------------------KA------------------------E 112 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------------~a------------------------~ 112 (353)
+-.+. .+.|...++.+..++....... .+ .
T Consensus 95 ~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m 172 (539)
T KOG0548|consen 95 EGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLM 172 (539)
T ss_pred HHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHH
Confidence 88886 4666666666766662110000 00 0
Q ss_pred HHHHHHHH--------cc-------CCC------------C----------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 113 RALKELEN--------RN-------AHR------------D----------LSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 113 ~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
.....+.. .+ ..| | ......+.++..+..+++.|++-+.....
T Consensus 173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e 252 (539)
T KOG0548|consen 173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE 252 (539)
T ss_pred HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 00000000 00 000 0 01123344444455555555555555544
Q ss_pred hCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH-------HHHHHHhcCChHHHHHHHHHHHhcCC
Q 018582 156 AFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV-------MIGAYAKEGRLENAEELKERARRRGA 228 (353)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (353)
.. -+..-++....+|...|.+..+...-....+.|-. ...-|+. +..+|.+.++++.+...|.+......
T Consensus 253 l~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R 329 (539)
T KOG0548|consen 253 LA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR 329 (539)
T ss_pred Hh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence 33 23333444555566666555555444444433321 2222222 22344455666677777666554433
Q ss_pred CCChhhH-------------------------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582 229 DPNAKTW-------------------------EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283 (353)
Q Consensus 229 ~p~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (353)
.|+..+- ..-...+.+.|++..|++.|.++++.. +-|...|+...-+|
T Consensus 330 t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-------P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 330 TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-------PEDARLYSNRAACY 402 (539)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CchhHHHHHHHHHH
Confidence 3332221 011233456677777777777777765 13466677777777
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 284 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
.+.|.+..|.+-.+...+.++ +....|..-..++....+++.++
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766666 55555554444444444444433
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=4.9e-06 Score=76.44 Aligned_cols=222 Identities=10% Similarity=0.125 Sum_probs=121.0
Q ss_pred CCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH-
Q 018582 16 NLGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW- 92 (353)
Q Consensus 16 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 92 (353)
++.| +...|..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+ .+... ...+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccc
Confidence 3434 4678999999999999999999999977764 45544 444444466666666555544 22221 11111
Q ss_pred ------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 93 ------------------TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 93 ------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
..+..+..+|-+.|+.++|..+++++.+..+. ++.+.|.+...|... +.++|.+++.+..
T Consensus 99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 33344444455555555555555555544432 444555555555544 5555555544433
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCChh
Q 018582 155 LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-GADPNAK 233 (353)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~ 233 (353)
.. +...+++..+.++|.++....+. +.+.-.++.+.+... |..--..
T Consensus 177 ~~---------------~i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 177 YR---------------FIKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HH---------------HHhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHhhhccchhHH
Confidence 22 22333444444444444433221 222222333333322 2222344
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHH
Q 018582 234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 284 (353)
Q Consensus 234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (353)
++-.+...|...++|+++.++++.+++... -|.....-++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-------~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDN-------KNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-------cchhhHHHHHHHHH
Confidence 555566677778888888888888888751 34566666666665
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=3.8e-06 Score=76.19 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 018582 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203 (353)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 203 (353)
..++.++..|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 346777888888888888888888888887775432 4446667777888888888888888888877644 67777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHH
Q 018582 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 280 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (353)
..++...|++++|..+|+++...+. -+..++..+...+-..|+.++|...|+...+.. .|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-------~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-------GDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------CcchHHHHHHH
Confidence 7888888888888888888877432 246777777888888888888888888877762 15555555544
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=3.6e-09 Score=55.00 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018582 193 ATYDIRVTNVMIGAYAKEGRLENAEELKERA 223 (353)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (353)
+.||..+|++||.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=4.3e-06 Score=73.08 Aligned_cols=232 Identities=15% Similarity=0.115 Sum_probs=169.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (353)
..+...+.+.|-..+|..+|+++.. +..++.+|...|+..+|..+..+..+ -+||+..|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 4456677778888888888887654 33578888888888888888887766 35688888888887777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 018582 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 219 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 219 (353)
.--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 77788888888764322 11122222334688888988888877655 33667888888888899999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582 220 KERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 220 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (353)
|..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+. -+..+|...+....+.|.+++|.+.+.++
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-------~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-------QHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-------CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 98877652 22567899999999999999999999999988862 34566777777788899999999998887
Q ss_pred HhcCCC-CChhhhHHHHHHHH
Q 018582 300 KKAVDD-LGVEVFEPLIRTYA 319 (353)
Q Consensus 300 ~~~~~~-~~~~~~~~l~~~~~ 319 (353)
...... .+..+...++....
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHhhhhcccchhhHHHHHHHH
Confidence 763211 24444444444443
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=2.6e-05 Score=66.06 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582 198 RVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 276 (353)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
-+|...++.-.+...++.|..+|.+..+.+..+ ++...++++.-++. ++.+.|.++|+--++.- ..++.-.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-------~d~p~yv 438 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-------GDSPEYV 438 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-------CCChHHH
Confidence 466777787788888899999999999887777 66777888887765 67888999998876663 1345555
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCC--CChhhhHHHHHHHHHcCCChH
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVDD--LGVEVFEPLIRTYAAAGRTSP 326 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 326 (353)
...+.-+...++-..+..+|+++...... .....|..++.--+.-|+.+.
T Consensus 439 ~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 439 LKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 67777888889999999999999887442 345789999988888888443
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-05 Score=68.03 Aligned_cols=307 Identities=16% Similarity=0.136 Sum_probs=207.9
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCC
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW-TTFSNLASIYVEAGL 107 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 107 (353)
++.+..|+++.|+.+|.+..... ++|...|..-..+++..|++++|.+=-.+-++ ..|++ .-|+....++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhccc
Confidence 45677899999999999998864 56888899999999999999999988877777 45665 578899999999999
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc----------------------------C------------------
Q 018582 108 FEKAERALKELENRNAHRDLSAYQFLITLYGQT----------------------------G------------------ 141 (353)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------~------------------ 141 (353)
+++|+..|.+-.+..+. +...++-+.+++... .
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999987665433 444444444443110 0
Q ss_pred --CHHHHHHHHHHHH--------Hh-------CCCC---------C-------------hhHHHHHHHHHHhcCChhHHH
Q 018582 142 --NLSEVYRIWRSLR--------LA-------FPNT---------A-------------NISYLNMIQVLVNLKDLPGAE 182 (353)
Q Consensus 142 --~~~~a~~~~~~~~--------~~-------~~~~---------~-------------~~~~~~l~~~~~~~~~~~~a~ 182 (353)
+.+......-.+. .. ...| . ..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0000000000000 00 0001 0 012334556666677788888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH-------HHHHHHccCChHHHHHHH
Q 018582 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI-------FSDYYLRNGDMKLAVDCL 255 (353)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-------li~~~~~~~~~~~a~~~~ 255 (353)
+.+....... -+..-++....+|...|.+.+....-....+.|-. ...-|+. +..+|.+.++++.++.+|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8888877665 36666777778888888888777766665555422 1222322 334666778899999999
Q ss_pred HHHHHcCCCCCCC------------------CcccH-HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 256 EKAIDTGRGDGGK------------------WVPSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 256 ~~~~~~~~~~~~~------------------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
.+.+.....|+.. +.|.. .-...=...+.+.|++..|.+.|.+++..+| .|...|.....
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence 9988776543211 12221 1111223457789999999999999999998 99999999999
Q ss_pred HHHHcCCChHHHHHHHHhCCCccCHhHH
Q 018582 317 TYAAAGRTSPVMLRRLKMEKVEVSEASK 344 (353)
Q Consensus 317 ~~~~~g~~~~~~~~~m~~~~~~p~~~~~ 344 (353)
+|.+.|....++-+.-....+.|+...-
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 9999999888887666666666765543
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=1.9e-06 Score=66.17 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=95.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582 131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 210 (353)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (353)
..+-..+...|+-+....+........+ .|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 4444555556666665555554433222 233344446666666777777777777766655 34667777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChh
Q 018582 211 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD 290 (353)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 290 (353)
|+.++|..-|.+..+... -+...++.+.-.+.-.|+.+.|..++......+. -+..+-..+.......|+++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-------ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-------ADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHHhhcCChH
Confidence 777777777776665422 2445566666666666777777777776666541 25556666666666677777
Q ss_pred hHHHHHHH
Q 018582 291 GAEGFLEI 298 (353)
Q Consensus 291 ~a~~~~~~ 298 (353)
.|..+...
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 77665543
No 111
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.9e-05 Score=63.49 Aligned_cols=77 Identities=13% Similarity=-0.049 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
..|+.+++--...+-.-...+--.+..++.+.|++++|+..|..+.+.. .|+...+..+.-+..-.|.+.+|..+-.
T Consensus 39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 4566666655543321222233345566778899999999998887753 5666666666666666677777766544
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=3.4e-06 Score=64.77 Aligned_cols=164 Identities=17% Similarity=0.110 Sum_probs=122.7
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM 168 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (353)
+-|..+ ..+-..+...|+-+.+..+........+ .|......++....+.|++..|+..+++.....+ +|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHH
Confidence 334444 5566777777888888777777654322 3555666688888888888888888888776644 678888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582 169 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 248 (353)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 248 (353)
.-+|.+.|+++.|..-|.+..+..+. +....|.+.-.|.-.|+.+.|..++......+.. |...-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 88888888888888888888876544 6667777888888888888888888887766432 666777777788888888
Q ss_pred HHHHHHHHH
Q 018582 249 KLAVDCLEK 257 (353)
Q Consensus 249 ~~a~~~~~~ 257 (353)
+.|.++...
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 888877644
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=2.8e-05 Score=74.75 Aligned_cols=298 Identities=15% Similarity=0.049 Sum_probs=183.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCC--C----CCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----H
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASS--I----MPDSY--TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----W 92 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 92 (353)
......+...|++++|...+......- . .+... ....+...+...|++++|...++.....- ...+ .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 491 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHH
Confidence 444555667889999999888775431 0 01111 12223345567899999999999887631 1112 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh----CCC--C-
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAH-----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----FPN--T- 160 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~- 160 (353)
...+.+...+...|++++|...+++....... ....++..+...+...|++++|...+++.... +.. +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 23456667778899999999998887542111 11234556677788899999999998876542 211 1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CChhhH
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESG----CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PNAKTW 235 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~ 235 (353)
....+..+...+...|++++|...+.+.... +.......+..+...+...|++++|.+.+.+....... .....+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 1223445556677789999999988886542 21112344555667788899999999998887542111 011111
Q ss_pred -----HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC
Q 018582 236 -----EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA----VDDL 306 (353)
Q Consensus 236 -----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 306 (353)
...+..+...|+.+.|.+.+......... . .......+..+..++...|+.++|...+++.... +...
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA--N-NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc--c-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 11224445578888888887765442210 0 0001122455667788899999999998887663 2211
Q ss_pred -ChhhhHHHHHHHHHcCCChH
Q 018582 307 -GVEVFEPLIRTYAAAGRTSP 326 (353)
Q Consensus 307 -~~~~~~~l~~~~~~~g~~~~ 326 (353)
...+...+..++.+.|+..+
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHH
Confidence 23466777888888898443
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.82 E-value=5.9e-05 Score=65.35 Aligned_cols=308 Identities=14% Similarity=0.143 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 100 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (353)
..|-.-+....++|+......+|+..... -+......|...+.-....+-++.+..+|++..+ +.|.. -+--+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~--~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEA--REEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHH--HHHHHH
Confidence 45666677778888888888888887764 2334456788888888888889999999999987 34544 567888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------cCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582 101 IYVEAGLFEKAERALKELENR------NAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMIQV 171 (353)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (353)
.+++.+++++|-+.+...... ..+.+...|..+-+...+..+.-. ...+++.+...-...-...|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 999999999999998877432 122355566666666555443322 23334433332222223478999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------------------hHHHHHHHHHHHhcCC-
Q 018582 172 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR----------------------LENAEELKERARRRGA- 228 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~a~~~~~~~~~~~~- 228 (353)
|.+.|.+++|..+|++....- ..+.-|+.+.++|..... ++-...-|+.+...+.
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999999977542 245556666666654321 1122223333332210
Q ss_pred ----------CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 229 ----------DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 229 ----------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
+-++..|..-+. ...|+..+-...+.++.+. +.|....-.-...|..+...|...|+.+.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 012222222221 2346777888888888876 222211111245789999999999999999999999
Q ss_pred HHhcCCCCCh----hhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582 299 LKKAVDDLGV----EVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE 341 (353)
Q Consensus 299 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~ 341 (353)
..+... +.. .+|-.....-.++.+ .++.+..|+..-..|..
T Consensus 413 a~~V~y-~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 413 ATKVPY-KTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATHVPTN 457 (835)
T ss_pred hhcCCc-cchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhcCCCc
Confidence 887655 333 223333322233222 33445566666555554
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=2.3e-05 Score=75.30 Aligned_cols=275 Identities=12% Similarity=0.048 Sum_probs=178.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCcHHHHHHHH
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMKRDG----RVAADWTTFSNLA 99 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~ 99 (353)
...+...|++++|...++.....--..+. ...+.+...+...|++++|...+++..... .......++..+.
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34566799999999999988763111111 234555666778999999999998877531 0111223456677
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----ccCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCC--ChhHHHHH
Q 018582 100 SIYVEAGLFEKAERALKELEN----RNAH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF--PNT--ANISYLNM 168 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l 168 (353)
..+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 788899999999999887644 2211 1 22334556667778899999999998865431 112 22345556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHH
Q 018582 169 IQVLVNLKDLPGAEKCFKEWESGCATY-DIRVT-----NVMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFS 239 (353)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li 239 (353)
...+...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 677888999999999998875421110 11111 11224455688999999998775542111111 1134566
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.++...|++++|...++......... + ..+ ...+...+..++.+.|+.++|...+.+..+...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 77889999999999999887652100 0 112 234566777788999999999999999887554
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.4e-05 Score=60.30 Aligned_cols=251 Identities=16% Similarity=0.101 Sum_probs=156.0
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH
Q 018582 30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 109 (353)
Q Consensus 30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (353)
-+.-.|++..++..-...... +-+...-..+-++|...|+...... ++.. | -.|.......+......-++.+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-G-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-c-cCChHHHHHHHHHHhhCcchhH
Confidence 344456666666554433322 2333344445566776666543332 2222 2 2333444444444444444444
Q ss_pred HHH-HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 110 KAE-RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 110 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
.-+ ++.+.+.......+......-...|++.|++++|++..+.. -+......=+..+.+..+.+-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 33444444444434344444456788899999998887752 23344444456667788888999999998
Q ss_pred HhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 018582 189 ESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 264 (353)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (353)
.+.. +..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++..+....
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~- 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA- 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence 8754 55666767766665 35688899999998875 577888888888888899999999999999888752
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCChhh-HHHHHHHHHhcCC
Q 018582 265 DGGKWVPSSETIRTFMRHFEQEKDVDG-AEGFLEILKKAVD 304 (353)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~ 304 (353)
-++.+...++.+-...|...+ -.+.+.+++...+
T Consensus 239 ------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 239 ------KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred ------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 456777777776666665544 4456666666554
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.77 E-value=8.3e-07 Score=64.28 Aligned_cols=109 Identities=11% Similarity=-0.022 Sum_probs=69.0
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582 42 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121 (353)
Q Consensus 42 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (353)
.+|++..+. .|+. +......+...|++++|...|+..... .+.+...+..+..++.+.|++++|...|+.....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444442 2332 444555666677777777777776665 4556666667777777777777777777777665
Q ss_pred cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 018582 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF 157 (353)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (353)
.+. +..++..+..++...|++++|...|+......
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 443 56666666677777777777777777666543
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.8e-05 Score=61.04 Aligned_cols=241 Identities=14% Similarity=0.128 Sum_probs=165.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582 64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143 (353)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (353)
+-+.-.|++..++..-...... +.+...-..+.++|...|++.... .++.... .|...+...+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 3344456777666655544432 244444455777788777665433 3333322 34445555555544444554
Q ss_pred HHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 144 SEVY-RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 144 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
++-+ ++.+.+.......+......-...|+..+++++|.+..+... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 344555544444444444455667899999999999987622 334444445667788999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 223 ARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 223 ~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
|.+-. +..|.+-|..++.+ .+.+..|.-+|++|.+. ..|+..+.+....++...|++++|..+++.
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-------~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-------TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-------cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 99752 66777777776653 45789999999999985 239999999999999999999999999999
Q ss_pred HHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 299 LKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
...... .++.+...++.+-...|..++..
T Consensus 233 aL~kd~-~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 233 ALDKDA-KDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HHhccC-CCHHHHHHHHHHHHHhCCChHHH
Confidence 999998 78888888888888888865444
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.6e-05 Score=60.83 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=140.5
Q ss_pred cCCcchHHHHHHHHHHC---C-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582 34 TGHPEKIPAIIQEMKAS---S-IMPDSYT-YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF 108 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~---~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (353)
..+.++.++++.++... | ..++..+ |..++-+....|+.+.|...++.+..+ ++-+..+-..-...+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 45678888888887653 3 4455553 555666777889999999999998887 655554444444445567889
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
++|.++++.+.+..+. |.+++---+...-..|+.-+|++-+....+.-+ .|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999887754 677777777777778888888888888877744 68899999999999999999999999998
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhc
Q 018582 189 ESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRR 226 (353)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 226 (353)
.-.. +.+...+..+.+.+.-.| +.+.+.+.|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8765 336666666666655444 566788888888775
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=8.1e-07 Score=64.35 Aligned_cols=110 Identities=9% Similarity=-0.110 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582 200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279 (353)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (353)
+..+...+...|++++|...|+...... +.+...|..+...+...|++++|...|+.....+ ..+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-------p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-------ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHHHHHH
Confidence 3345566667777777777777766653 2256666777777777777777777777777664 1346666777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (353)
..++...|++++|...|+...+..+ .++..|.....+.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~~p-~~~~~~~~~~~~~ 136 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKMSY-ADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 7777777777777777777777666 5655555544443
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=7.8e-05 Score=63.93 Aligned_cols=183 Identities=10% Similarity=0.062 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|.+.-+.+...+ +.|...+..=+-+..+.++|++|+.+.+.-.. ...+...+---..+..+.+..++|...++-
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~ 104 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLKG 104 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHhc
Confidence 466777777777655 34556666666777777888888754432211 011111112223345577788888887771
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC---------------------------CHHHHHHHH
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR---------------------------DLSAYQFLI 134 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~ 134 (353)
. .+.+..+...-...+.+.|++++|+.+|+.+.+.+..- ...+|..+.
T Consensus 105 ~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~y 179 (652)
T KOG2376|consen 105 L-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLY 179 (652)
T ss_pred c-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHH
Confidence 1 22333455566677788888999999988886654320 111333332
Q ss_pred ---HHHHccCCHHHHHHHHHHHHHhC-------CCCChh-------HHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582 135 ---TLYGQTGNLSEVYRIWRSLRLAF-------PNTANI-------SYLNMIQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 135 ---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
..+...|++.+|+++++.....+ -.-+.. .-..+.-.+-..|+.++|.+++..+.+..
T Consensus 180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 34556788888888888763221 111111 12233445566788888888888877655
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.7e-05 Score=59.62 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=149.8
Q ss_pred hcCCHHHHHHHHHHHHH---cc-CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582 104 EAGLFEKAERALKELEN---RN-AHRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 178 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (353)
...+.++..+++.++.. .| ..++. ..|..++-+....|+.+.|...++++...-+. +...-..-..-+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence 34678889999988854 33 34443 34566777888899999999999999887532 222222223335567999
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 018582 179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA 258 (353)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 258 (353)
++|.++++.+.+.++. |..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999988744 7777776677777788888999988888876 5669999999999999999999999999999
Q ss_pred HHcCCCCCCCCccc-HHHHHHHHHHHHhc---CChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582 259 IDTGRGDGGKWVPS-SETIRTFMRHFEQE---KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318 (353)
Q Consensus 259 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (353)
+-.. |. +..+..+...+.-. .+.+.+.+.|.+..+..+ .+...+..+..++
T Consensus 181 ll~~--------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~-~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 181 LLIQ--------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP-KNLRALFGIYLCG 235 (289)
T ss_pred HHcC--------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh-HhHHHHHHHHHHH
Confidence 9876 54 55556666654433 357788899999888776 4555444443333
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=0.00012 Score=58.80 Aligned_cols=288 Identities=12% Similarity=0.065 Sum_probs=202.2
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHH---HHHHhcCCcchHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChhHHHHHH
Q 018582 4 KAEALLEKMKELNLGFSSMPFNSLM---TLYAKTGHPEKIPAIIQEMKASSIMPDSYTY-NVWMRALAAVNDISGAERVI 79 (353)
Q Consensus 4 ~A~~~~~~m~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~ 79 (353)
.|+.-|....+ .|+..|.++. ..|...|+...|+.=+.+..+ .+||-..- ..-...+.+.|.++.|..=|
T Consensus 56 DALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 56 DALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred HHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 34444555444 3445555544 468888998889888888877 46775432 22345678999999999999
Q ss_pred HHHHHcCCCCCcH----HHH------------HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582 80 EEMKRDGRVAADW----TTF------------SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143 (353)
Q Consensus 80 ~~~~~~~~~~~~~----~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (353)
+...+.. |+. ..+ ...+..+...|+...|+.....+.+..+. |...|..-..+|...|++
T Consensus 130 ~~vl~~~---~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 130 DQVLQHE---PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHhcC---CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcH
Confidence 9998853 321 111 22344566789999999999999887655 888888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH---HH-------H--HHHHHhcC
Q 018582 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT---NV-------M--IGAYAKEG 211 (353)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~-------l--i~~~~~~g 211 (353)
..|+.=++...+... -+..++-.+-..+...|+.+.++...++.++.++.. -..| .. | +......+
T Consensus 206 k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH-K~Cf~~YKklkKv~K~les~e~~ie~~ 283 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH-KLCFPFYKKLKKVVKSLESAEQAIEEK 283 (504)
T ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch-hhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999887776654432 355666677788889999999999999888765331 1111 11 1 12234556
Q ss_pred ChHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcC
Q 018582 212 RLENAEELKERARRRGADPNAK---TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK 287 (353)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 287 (353)
++-++.+-.+.+.+..+..... .+..+-.++...+++-+|++.-.+.++.. |+ +.++.--..+|.-..
T Consensus 284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--------~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--------PDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHhhhH
Confidence 7777777777777664332223 34455566777889999999999998875 55 888988899999889
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhhH
Q 018582 288 DVDGAEGFLEILKKAVDDLGVEVFE 312 (353)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (353)
.++.|..-|+...+.+. .|..+-.
T Consensus 356 ~YD~AI~dye~A~e~n~-sn~~~re 379 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNE-SNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHHhcCc-ccHHHHH
Confidence 99999999998888776 5544433
No 124
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=5.7e-05 Score=68.80 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (353)
+|..+..+-.+.|.+.+|.+-|-+. -|+..|..+++...+.|.|++..+++...++....|... +.++-+|+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHH
Confidence 4445555555555555554444322 134455555555555555555555555444443333222 24444555
Q ss_pred hcCChhHHHH
Q 018582 174 NLKDLPGAEK 183 (353)
Q Consensus 174 ~~~~~~~a~~ 183 (353)
+.++..+.++
T Consensus 1178 kt~rl~elE~ 1187 (1666)
T KOG0985|consen 1178 KTNRLTELEE 1187 (1666)
T ss_pred HhchHHHHHH
Confidence 5554444333
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=7.8e-05 Score=62.58 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=93.5
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (353)
+...|+++.|+..++.+...-+. |+..+......+...++.++|.+.++.+....+. .......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 34566777777777776654332 5555555666777777777777777776665432 134445566677777777777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
..+++......+. |+..|..|.++|...|+..++..-..+ .+...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 7777776665533 667777777777777766665544333 344456666666666666555
Q ss_pred CCCCCCCCcccHHHHHHHHHH
Q 018582 262 GRGDGGKWVPSSETIRTFMRH 282 (353)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~ 282 (353)
... -.|+-.-+...|..
T Consensus 455 ~~~----~~~~~aR~dari~~ 471 (484)
T COG4783 455 VKL----GFPDWARADARIDQ 471 (484)
T ss_pred ccC----CcHHHHHHHHHHHH
Confidence 311 22454444444443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=4.4e-06 Score=60.07 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 243 (353)
....+...+...|++++|...++.+...++. +...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444555555666666666666666554422 55566666666666666666666666655543 224455555556666
Q ss_pred ccCChHHHHHHHHHHHHcC
Q 018582 244 RNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~ 262 (353)
..|++++|...|+...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 6666666666666666654
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=6.4e-06 Score=59.19 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (353)
....+...+.+.|++++|.+.|+.+...++. +...+..+...+...|++++|...+++....++ .+...+..+..++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 3344444444555555555555554443322 344444444444445555555555544443322 12333333444444
Q ss_pred hcCChhHHHHHHHHHHh
Q 018582 174 NLKDLPGAEKCFKEWES 190 (353)
Q Consensus 174 ~~~~~~~a~~~~~~~~~ 190 (353)
..|++++|...++...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00017 Score=65.90 Aligned_cols=268 Identities=10% Similarity=0.073 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (353)
..|+.+..+-.+.|...+|++-|-+. -|+..|.-+++.+.+.|.+++-.+.+...++.. ..|...+ .|+-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDS--ELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchH--HHHHH
Confidence 34444444444444444444444211 234445555555555555555555555554443 3444333 45555
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (353)
|++.++..+.++.+. -|+......+.+-|...|.++.|.-+|.. ..-|..+...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 555555444443321 23444444444555555555555444432 22344444444445555444
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
...-++. .+..+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..+..
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 4333321 1344555555555444443322 2222233334445566777777777777777776665433
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCC------CCChhhhHHHHHHHHHcCCChHHHHHHHH
Q 018582 262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVD------DLGVEVFEPLIRTYAAAGRTSPVMLRRLK 333 (353)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~~m~ 333 (353)
. ......|+-|.-.|++-. ++...+-++-.-. .++ ......|.-|+-.|.+-..++.+.+..|.
T Consensus 1309 E-------RAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~ 1379 (1666)
T KOG0985|consen 1309 E-------RAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMME 1379 (1666)
T ss_pred h-------HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 1 134456666666666542 3433333332221 122 01245677777777776666666555554
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=0.00011 Score=61.64 Aligned_cols=119 Identities=11% Similarity=-0.018 Sum_probs=64.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHH
Q 018582 173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLA 251 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a 251 (353)
...|++++|+..++.+.+..+ -|+..+....+.+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 345556666666666555432 25555555555566666666666666665554 233 33444455556666666666
Q ss_pred HHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 252 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
+.++++..... +.|+..|..|.++|...|+..++.....+...
T Consensus 394 i~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 394 IRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 66666555553 12455556666666655555555554444433
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=4e-05 Score=69.56 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (353)
..|..|...|....+...|...|++..+.+ ..+...+......|++..+++.|..+.-..-+......-..-|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 456666666666666666666666665532 2234445555566666666666655522221110000001111122333
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018582 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL 153 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (353)
|.+.++..+|..-|+......|. |...|..+..+|...|++..|+++|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 44444444444444444443332 4444555555555555555555555444
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.49 E-value=1.4e-05 Score=67.17 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (353)
..+++.+...++++.|..+|+++.+. .|+.. ..++..+...++-.+|.+++.+..+..+. +..........+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 34555566667777777777777764 25433 34667777777777777777777655433 56666666667777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
.++++.|+++.+++....+ -+-.+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777766533 234477777777777777777777777654
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.48 E-value=2.1e-07 Score=49.13 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS 56 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 56 (353)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6777888888888888888888888777777763
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.00067 Score=61.29 Aligned_cols=223 Identities=13% Similarity=0.101 Sum_probs=127.0
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH
Q 018582 32 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA--LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 109 (353)
Q Consensus 32 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (353)
...+++.+|+....++.+.. ||. .|..++.+ +.+.|..++|..+++.....+ ..|..|...+-.+|.+.++.+
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhh
Confidence 45677788888888877653 443 23334443 457788888888777776654 337777888888888888888
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-h---------h
Q 018582 110 KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD-L---------P 179 (353)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---------~ 179 (353)
+|..++++..... |+..-...+..+|.+.+.+.+-.+.--++-+.-+ -+.+.|-++++.....-. . .
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHH
Confidence 8888888876643 4566666677777777777654444444433322 344555566665544321 1 1
Q ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHH-HHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582 180 GAEKCFKEWESGC-ATYDIRVTNVMIGAYAKEGRLENAEELKER-ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257 (353)
Q Consensus 180 ~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 257 (353)
-|.+.++.+.+.+ .--+..-...-...+...|.+++|.+++.. ..+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 2444444444332 111111111112233445667777776633 22322222233333445556666677777777666
Q ss_pred HHHcC
Q 018582 258 AIDTG 262 (353)
Q Consensus 258 ~~~~~ 262 (353)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 66666
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=0.00025 Score=63.46 Aligned_cols=159 Identities=19% Similarity=0.187 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
|+++|..++.+.++ |..|=..|-..|.|++|+++-+.--+- .=..||.....-+-..+|.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 56777777777766 333444556678888887775432221 123466666666667777877777766
Q ss_pred HHH----------HcCCCCCc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582 81 EMK----------RDGRVAAD----------WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT 140 (353)
Q Consensus 81 ~~~----------~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (353)
+.- .. .++. ...|.--...+-..|+.|.|+.++....+ |-.+++..|-.
T Consensus 883 K~~~hafev~rmL~e--~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKE--YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred hcCChHHHHHHHHHh--ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 431 11 2222 22222233334456677777776665432 33444444455
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 141 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
|+.++|-++-++- -|....-.+...|-..|++.+|..+|.+.
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5555555444321 24444455666666666666666666554
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.001 Score=60.22 Aligned_cols=219 Identities=13% Similarity=0.114 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHH--HHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTL--YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 79 (353)
+.+|....+.+.++- |+.. |...+.+ ..+.|+.++|..+++.....+. .|..|...+-.+|...++.++|..+|
T Consensus 25 fkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 456777777776543 4433 4444444 4678999999988887766543 37778999999999999999999999
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC-CHH---------HHHHH
Q 018582 80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLS---------EVYRI 149 (353)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~---------~a~~~ 149 (353)
++..+. -|+......+..+|.+.+++.+-.++--++.+.-+. ....+-.+++.....- ..+ -|.+.
T Consensus 101 e~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 101 ERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999985 477888888999999999887766665555543333 4455555555554432 222 24444
Q ss_pred HHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582 150 WRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEKCFK-EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227 (353)
Q Consensus 150 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (353)
++.+.+.+ .--+..-...-...+...|++++|..++. ...+.-.+.+...-+.-++.+...+++.+..++-.++..+|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55554443 22222223334455667899999999994 44444445566666778889999999999999999999886
Q ss_pred C
Q 018582 228 A 228 (353)
Q Consensus 228 ~ 228 (353)
.
T Consensus 257 ~ 257 (932)
T KOG2053|consen 257 N 257 (932)
T ss_pred C
Confidence 3
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=4.2e-05 Score=55.61 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=9.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHh
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=2e-05 Score=57.28 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=38.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHH
Q 018582 204 IGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 281 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (353)
...+...|++++|...|+.+......|+. .....+...+...|++++|+..++...... .....+.....
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------~~~~~~~~~Gd 126 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--------FKALAAELLGD 126 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------hHHHHHHHHHH
Confidence 34444455555555555555544311111 122233444455555555555554321111 22333444444
Q ss_pred HHHhcCChhhHHHHHHH
Q 018582 282 HFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 282 ~~~~~~~~~~a~~~~~~ 298 (353)
.+.+.|++++|...|+.
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 55555555555555543
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=2.8e-07 Score=48.25 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP 54 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 54 (353)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 139
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.45 E-value=5.4e-05 Score=66.77 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=75.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 213 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (353)
+.+......|.+|+.+++.+..... -..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4455667788888888887766543 3345778888999999999999988653 2345568889999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHH
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCL 255 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 255 (353)
++|.++-.+.. |.......|..-..-+-.+|++.+|.+++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 99988876644 23334455555555556666666665554
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.44 E-value=1.2e-05 Score=67.57 Aligned_cols=126 Identities=16% Similarity=0.148 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 243 (353)
....++..+...++++.|..+++++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34556666777778888888888887764 33 34456777777777778888888877652 225555555666677
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 244 RNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
+.++++.|+++.+++.... |+ -.+|..|..+|.+.|+++.|+-.++.+.-.
T Consensus 246 ~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888888888888765 54 457888888888888888888777765443
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=5.7e-05 Score=68.63 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-IMPDSYTYNVWMRALAAVNDISGAERVIEEM 82 (353)
Q Consensus 4 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 82 (353)
.|.+.|+...+.+. -+...+......|++..+++.|..+.-..-+.. ...-...|....-.+...++...|..-|+..
T Consensus 510 RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA 588 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA 588 (1238)
T ss_pred HHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence 56777777766653 567889999999999999999999843322211 0111223333444567778889999999988
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
.+. .|.|...|..++.+|.++|.+..|.++|.+.....+. +...--.....-+..|.+.+|+..+....
T Consensus 589 LR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 589 LRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 886 5778889999999999999999999999888664332 22222222334566788888888777654
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.42 E-value=1.7e-05 Score=55.46 Aligned_cols=107 Identities=9% Similarity=0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 276 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
++..++..+.+.|++++|...|..+...... .....+..+...+.+.|+++.|.+.++.+...... ......++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----SPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----CCcccHHH
Confidence 3445555666666677777666666654211 01234445666666667777777777766655310 00113455
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (353)
..+..++.+.|+.++|.+.++++.+..| .+..+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~ 112 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYP-GSSAA 112 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCc-CChhH
Confidence 5666666667777777777777666655 44433
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=5.7e-07 Score=47.44 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRRGADPN 231 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 231 (353)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.38 E-value=9.1e-06 Score=68.68 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=107.3
Q ss_pred HHHHHHH---CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582 43 IIQEMKA---SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR-VAADWTTFSNLASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 43 ~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (353)
++..|.+ .+.+.+......+++.+....+++.+..++.+.+.... ...-..|..++++.|.+.|..+.++.+++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444433 34566777888899999888999999999988887521 1122334569999999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 119 ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
...|+.||..+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988776666777877777776665
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.35 E-value=1e-06 Score=46.03 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 018582 198 RVTNVMIGAYAKEGRLENAEELKERARRRGADP 230 (353)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 230 (353)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355566666666666666666666666555554
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.32 E-value=0.00012 Score=64.64 Aligned_cols=164 Identities=19% Similarity=0.287 Sum_probs=83.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY 147 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (353)
....+.+|+.+++.+..+ ..-...|..+.+-|...|+++.|.++|-+.- .++-.|..|.+.|+|+.|.
T Consensus 744 ~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 334455555555555442 2233345555566666666666666654321 2334455666666666666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582 148 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227 (353)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (353)
++-.+. .|+......|.+-..-+-..|++.+|.++|-.+. .|+ ..|..|-+.|..+..+++..+-...
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence 554433 2333333444444444555566666665553322 222 2355566666666666555442211
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582 228 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257 (353)
Q Consensus 228 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 257 (353)
.-..|...+..-|-..|+.+.|.+-|-+
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 1123445556666666777766665533
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=0.00012 Score=51.22 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=8.0
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 018582 133 LITLYGQTGNLSEVYRIWRSL 153 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~ 153 (353)
+...+.+.|+++.|...|+.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 333333333333333333333
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.23 E-value=3.8e-05 Score=51.00 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=32.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH
Q 018582 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 144 (353)
Q Consensus 65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (353)
.+...|++++|...++.+.+. .+.+...+..+..++...+++++|.+.++......+. +..++..+...+...|+++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHhHH
Confidence 333344444444444444332 1222233333444444444444444444443332221 2223333334444444444
Q ss_pred HHHHHHHH
Q 018582 145 EVYRIWRS 152 (353)
Q Consensus 145 ~a~~~~~~ 152 (353)
+|...+..
T Consensus 86 ~a~~~~~~ 93 (100)
T cd00189 86 EALEAYEK 93 (100)
T ss_pred HHHHHHHH
Confidence 44444433
No 149
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00039 Score=62.32 Aligned_cols=212 Identities=14% Similarity=0.157 Sum_probs=146.7
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHC-C--------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-S--------IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA 90 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 90 (353)
+...|..+...|.+..+.+-|.-.+-.|... | -.|+ .+-.-+.-.....|.+++|..+|++-.+..
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 4467999999999999888887777666432 1 1122 333333344567889999999999887743
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH----------HHhCC--
Q 018582 91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL----------RLAFP-- 158 (353)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~-- 158 (353)
.|=..|-..|.+++|.++-+.=... . =..||......+-..++.+.|++.|++. ....+
T Consensus 831 ------LlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 831 ------LLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ------HHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 3445666789999999887653221 1 2236666667777788888888887752 22211
Q ss_pred -------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582 159 -------NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 231 (353)
Q Consensus 159 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 231 (353)
..|...|......+-..|+.+.|+.+|.... -|-.+++..|-.|+.++|-++-++-. |
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~esg------d 966 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEESG------D 966 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhcc------c
Confidence 2355567777777778888888888887654 24567777788888888888876622 5
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582 232 AKTWEIFSDYYLRNGDMKLAVDCLEKAID 260 (353)
Q Consensus 232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 260 (353)
....-.+.+.|-..|++.+|..+|.+...
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 56666788888888999999888876543
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=0.0014 Score=52.02 Aligned_cols=180 Identities=20% Similarity=0.212 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLS--AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN- 174 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 174 (353)
....+.+.|++++|.+.|+.+...-+.+... +.-.++.++.+.+++++|...+++..+..+.-...-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 4444456677777777777776654432211 1134456667777777777777777766554333344333333321
Q ss_pred -cC---------------C---hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 018582 175 -LK---------------D---LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235 (353)
Q Consensus 175 -~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 235 (353)
.+ + ...|...|+.+++. |=...-..+|...+..+... =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHH
Confidence 10 1 11233344444333 32333344555544444322 01111
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582 236 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300 (353)
Q Consensus 236 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 300 (353)
-.+..-|.+.|.+..|..-++.+++.-.. ..........++.+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 24556788899999999999999987521 11345677788899999999999988777553
No 151
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.22 E-value=3.6e-05 Score=65.15 Aligned_cols=123 Identities=10% Similarity=-0.017 Sum_probs=96.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582 88 VAADWTTFSNLASIYVEAGLFEKAERALKELENR--NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 165 (353)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (353)
.+.+......+++.+....+++.+..++-+.... ....-..+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 5667777778888888888888888888888664 22222345668889999999999999998888888888999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 210 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (353)
+.+++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999888887766666666666666665555
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.22 E-value=1.8e-05 Score=52.53 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcCC--------hhHHHHHHHHHHHcCCCCCcHHHH
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASSI-MPDSYTYNVWMRALAAVND--------ISGAERVIEEMKRDGRVAADWTTF 95 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~ 95 (353)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.+++.- .-..+.+|+.|...+ ++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 3445555566777777778877777777 7777788777777665532 234556666666665 66666666
Q ss_pred HHHHHHHHh
Q 018582 96 SNLASIYVE 104 (353)
Q Consensus 96 ~~l~~~~~~ 104 (353)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666665543
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=3.8e-05 Score=50.99 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (353)
+|..+...+...|++++|...+++..+.. +.+...+..+..++...++++.|.+.++..... .+.+..++..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 45667788888999999999999998753 334467778888899999999999999999886 355557888899999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 018582 103 VEAGLFEKAERALKELENR 121 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~ 121 (353)
...|+++.|...+......
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999887654
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.15 E-value=0.0038 Score=53.55 Aligned_cols=208 Identities=13% Similarity=0.078 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582 108 FEKAERALKELENRNAHRDLSAYQFLITLYGQT---GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184 (353)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (353)
.+++..+++.....-...+...|..+.+.--.. ...+.....++++......--..+|...++...+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 455666666655433333444444444322222 23666777777776653333345788889999999999999999
Q ss_pred HHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582 185 FKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 263 (353)
|.+..+.+..+ ++.++++++..||. ++.+-|.++|+--.++ ...++.--...++-+...++-..+..+|++....+.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999877666 88889999998875 6788999999886654 232344456677888889999999999999999864
Q ss_pred CCCCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCChhhhHHHHHHHHHcCC
Q 018582 264 GDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD---DLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 264 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 323 (353)
+ |+ ..+|..++.-=..-|+...+.++-+++...-+ .+....-..+++-|.-.+.
T Consensus 467 ~------~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 467 S------ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred C------hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 3 44 58999999999999999999998887665332 1222334455555555554
No 155
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.14 E-value=5.5e-05 Score=50.34 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=22.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHh
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFP-NTANISYLNMIQVLVN 174 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 174 (353)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3444444555555555555555555 5555555555555443
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.14 E-value=0.00073 Score=55.23 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHHHHHh----cCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----Ch
Q 018582 164 SYLNMIQVLVNL-KDLPGAEKCFKEWES----GCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-----NA 232 (353)
Q Consensus 164 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----~~ 232 (353)
.+..+...|... |+++.|.+.|++... .+. ..-..++..+...+.+.|++++|.++|+++...-... +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455556666 777888877777543 221 1123455667778888888888888888876542221 11
Q ss_pred h-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHH
Q 018582 233 K-TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLE 297 (353)
Q Consensus 233 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (353)
. .+...+-.+...||+..|.+.+++....... +.. .......|+.++-. ||.+.......
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~----F~~s~E~~~~~~l~~A~~~-~D~e~f~~av~ 258 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPS----FASSREYKFLEDLLEAYEE-GDVEAFTEAVA 258 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT----STTSHHHHHHHHHHHHHHT-T-CCCHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 1 2233344556678888888888887765411 112 23455666666543 44444333333
No 157
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.13 E-value=2.7e-06 Score=43.33 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASS 51 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 51 (353)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=1.3e-05 Score=52.13 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=6.3
Q ss_pred HHHHHhcCChHHHHHHH
Q 018582 204 IGAYAKEGRLENAEELK 220 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~ 220 (353)
..++.+.|++++|+++|
T Consensus 65 a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33333444444444333
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=0.00038 Score=52.30 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHH
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSET 275 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~ 275 (353)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. | +...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~ 108 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--------PKQPSA 108 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHH
Confidence 344445555555555555555555554322211 2345555555556666666666666655543 2 2334
Q ss_pred HHHHHHHHHhcCC--------------hhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 276 IRTFMRHFEQEKD--------------VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 276 ~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+..+..++...|+ +++|.+++++....++ .+ |..++..+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p-~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP-NN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc-hh---HHHHHHHHHhcCc
Confidence 4444445544444 4666777777666554 33 5566666655554
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.08 E-value=0.00085 Score=50.40 Aligned_cols=82 Identities=12% Similarity=0.012 Sum_probs=37.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 207 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 207 (353)
+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+.....+. +...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44444444445555555555554443322221 234444455555555555555555555443322 334444444444
Q ss_pred HhcCC
Q 018582 208 AKEGR 212 (353)
Q Consensus 208 ~~~g~ 212 (353)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=1.9e-05 Score=51.30 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRI 149 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (353)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..+++. ...+.. +....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444555555555554320011222333345555555555555555544 111111 112222334444455555555544
Q ss_pred HH
Q 018582 150 WR 151 (353)
Q Consensus 150 ~~ 151 (353)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.07 E-value=0.00022 Score=60.20 Aligned_cols=90 Identities=10% Similarity=-0.076 Sum_probs=48.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (353)
..+...|++++|++.|++..+..+ .+...|..+..++...|++++|...++++....+. +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 344455566666666665555443 23445555555555555666665555555554422 4445555555555555555
Q ss_pred HHHHHHHHHHhc
Q 018582 215 NAEELKERARRR 226 (353)
Q Consensus 215 ~a~~~~~~~~~~ 226 (353)
+|...|++..+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=0.00011 Score=62.02 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=53.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH---HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHH
Q 018582 205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFS---DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFM 280 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 280 (353)
..+...|++++|+..|++..+. +......+. .+|...|++++|+..++++++.. | +...|..+.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~~~a~~~lg 77 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL----DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PSLAKAYLRKG 77 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHH
Confidence 3444556666666666666543 443333222 34455666666666666666654 3 345555566
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHH
Q 018582 281 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 313 (353)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (353)
.+|...|++++|...|++..+.++ .+......
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P-~~~~~~~~ 109 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAP-GDSRFTKL 109 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 666666666666666666666555 44443333
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.05 E-value=6.3e-06 Score=41.91 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.04 E-value=0.00029 Score=57.39 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 206 (353)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 206 (353)
.+|..+++..-+.+..+.|..+|.+.++.+. .+...|......-.. .++.+.|.++|+...+.- ..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4677777777777778888888888764322 234455544444333 456666888888877653 4477777777888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582 207 YAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283 (353)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (353)
+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+.- |+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~--------~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF--------PEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT--------TTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------hhhhHHHHHHHHh
Confidence 88888888888888887765 22222 367777777777788888888887777764 5544444444433
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.03 E-value=0.0031 Score=50.07 Aligned_cols=181 Identities=11% Similarity=0.047 Sum_probs=116.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF---SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 135 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 135 (353)
+-.....+...|++++|.+.|+.+... .+-+.... -.++.++.+.++++.|...+++..+..+.-....|...+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 334455567889999999999999986 33333332 3567888999999999999999988766544445555554
Q ss_pred HHHc--c---------------CCH---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 018582 136 LYGQ--T---------------GNL---SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 195 (353)
Q Consensus 136 ~~~~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (353)
+.+. . .+. .+|+..|+.+.+.-| ++ .-..+|...+..+...
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--~S-------------~ya~~A~~rl~~l~~~---- 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--NS-------------QYTTDATKRLVFLKDR---- 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--CC-------------hhHHHHHHHHHHHHHH----
Confidence 4431 1 111 345555555555532 22 2234444444433321
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRR--GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 260 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 260 (353)
-...-..+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+..
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 0111125677889999999999999998865 2222345666788899999999999887766543
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00045 Score=56.23 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 171 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (353)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|-..... |...++.+.|.++|+...+.- ..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4788899999999999999999999985433 244455555544 334677788999999988773 3577788899999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 018582 172 LVNLKDLPGAEKCFKEWESGCATYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 242 (353)
+...++.+.|..+|++.... +.++ ...|...++.-.+.|+.+.+.++.+++.+. -|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999876 3323 358999999999999999999999999886 44544444454444
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.00057 Score=55.84 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=58.1
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHh----CCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----CcHH-H
Q 018582 133 LITLYGQT-GNLSEVYRIWRSLRLA----FPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----YDIR-V 199 (353)
Q Consensus 133 l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~ 199 (353)
+...|... |++++|++.|++..+. + .+. ...+..+...+.+.|++++|.++|+++...... .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33444444 5666666666654332 2 111 224455566666666666666666665543211 1121 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--hhhHHHHHHHHHc--cCChHHHHHHHHHHHHc
Q 018582 200 TNVMIGAYAKEGRLENAEELKERARRRG--ADPN--AKTWEIFSDYYLR--NGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~ 261 (353)
+...+-++...|++..|.+.+++..... +..+ ......|+.++-. ...+..++.-|+.+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 2223334455566666666666665431 1111 2334445555533 23355555555554444
No 169
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.98 E-value=0.00019 Score=54.04 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----------------CChHHHHHH
Q 018582 161 ANISYLNMIQVLVNL-----KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE----------------GRLENAEEL 219 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~~~ 219 (353)
+..+|..+++.+.+. |+.+-....+..|.+.|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444444444444332 44444455555555555555555555555554331 245678999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582 220 KERARRRGADPNAKTWEIFSDYYLRNGD 247 (353)
Q Consensus 220 ~~~~~~~~~~p~~~~~~~li~~~~~~~~ 247 (353)
+++|...|+.||..++..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999999999987765
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=0.00046 Score=49.60 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 246 (353)
.+...+...|++++|.++|+.+....+. +..-|..|.-++...|++++|+..|.......+ -|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 3444555667777777777766665533 556666666667777777777777777666543 35666666677777777
Q ss_pred ChHHHHHHHHHHHHc
Q 018582 247 DMKLAVDCLEKAIDT 261 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~ 261 (353)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777766655
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.96 E-value=0.00034 Score=52.33 Aligned_cols=60 Identities=7% Similarity=-0.124 Sum_probs=24.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018582 131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNT--ANISYLNMIQVLVNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 190 (353)
..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...+++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333444444444444444443322111 112334444444444444444444444443
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.96 E-value=0.00022 Score=53.36 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=57.0
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
...|..+...+...|++++|...|++.......++ ...++..+..++...|++++|+..++......+. ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 33455556666667777777777777765421111 2245666777777777777777777776654322 334455555
Q ss_pred HHHH-------ccCCHHHHHHHHHH
Q 018582 135 TLYG-------QTGNLSEVYRIWRS 152 (353)
Q Consensus 135 ~~~~-------~~~~~~~a~~~~~~ 152 (353)
..+. ..|+++.|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66777755555554
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.0002 Score=56.43 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=91.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582 170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 249 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 249 (353)
.-..+.+++.+|...|.+.++..+. |.+.|..-..+|++.|.++.|++=.+..+..+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3467788999999999999988755 8888888899999999999999888887765321 3578899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH-HhcCChh---hHHHHHHHHHhcCC
Q 018582 250 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF-EQEKDVD---GAEGFLEILKKAVD 304 (353)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~ 304 (353)
+|++.|++.++.. |+-.+|..=+... .+.+... .+..-++.....+.
T Consensus 167 ~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~ 217 (304)
T KOG0553|consen 167 EAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGA 217 (304)
T ss_pred HHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccC
Confidence 9999999988876 7777766555433 3333333 33344444434444
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.93 E-value=0.00034 Score=50.24 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT 140 (353)
Q Consensus 61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (353)
.+...+...|++++|.++|+.+... .+-+..-|-.|..++-..|++++|+..|.......+. |+.++-.+..++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 3344445556666666666666554 3444444555666666666666666666665555443 555555566666666
Q ss_pred CCHHHHHHHHHHHHH
Q 018582 141 GNLSEVYRIWRSLRL 155 (353)
Q Consensus 141 ~~~~~a~~~~~~~~~ 155 (353)
|+.+.|.+.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.0018 Score=57.30 Aligned_cols=138 Identities=14% Similarity=-0.009 Sum_probs=92.0
Q ss_pred CCCChhHHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 018582 158 PNTANISYLNMIQVLVNLK-----DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG--------RLENAEELKERAR 224 (353)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~ 224 (353)
...+...|...+.+..... +.+.|..+|++..+..+. +...|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4456677877777654332 356788888888887644 5556665544443321 1223333333332
Q ss_pred hc-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 225 RR-GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 225 ~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
.. ....+...|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|...+++....+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22 123344667766666667788999999999988877 777888888888888999999999888888877
Q ss_pred C
Q 018582 304 D 304 (353)
Q Consensus 304 ~ 304 (353)
|
T Consensus 484 P 484 (517)
T PRK10153 484 P 484 (517)
T ss_pred C
Confidence 6
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0017 Score=57.47 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=98.2
Q ss_pred cCCCCHHHHHHHHHHHHcc--C---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 018582 122 NAHRDLSAYQFLITLYGQT--G---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK--------DLPGAEKCFKEW 188 (353)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 188 (353)
..+.+..+|...+++.... + ....|..+|++..+..+. ....|..+..++.... +...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456788999988875442 2 367899999999887543 3445555444443321 122333444433
Q ss_pred Hhc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 189 ESG-CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 189 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
... ....+...|.++.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 123356778888777777899999999999999874 688899999999999999999999999999887
No 177
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.0063 Score=47.04 Aligned_cols=183 Identities=19% Similarity=0.224 Sum_probs=94.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
....+.+.|++++|.+.|+.+....+.. -..+.-.++.++.+.|+++.|...+++.....+.-....+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 4445556777777777777776653331 13345556677777777777777777777665433333333333222211
Q ss_pred CChhHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582 176 KDLPGAEKCFKEWESGCAT---YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 252 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 252 (353)
....... ....+.. --...+..++.-|=......+|...+..+.+. =...--.+...|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHH
Confidence 1111100 0000000 00123334444444455556666655555432 0111223567788999999999
Q ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHH
Q 018582 253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 293 (353)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 293 (353)
.-++.+++.-.. ..........++.++.+.|..+.+.
T Consensus 162 ~r~~~v~~~yp~----t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPD----TPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTT----SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCC----CchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999998511 0112356678888898988877544
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.89 E-value=0.00079 Score=50.87 Aligned_cols=105 Identities=18% Similarity=0.307 Sum_probs=65.4
Q ss_pred CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582 89 AADWTTFSNLASIYVE-----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 163 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (353)
..+..+|..+++.|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+ |.+- |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 4566677777777664 36677777788888888888888888888877654 2221 111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 212 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (353)
.+..+...| -.+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111111111 12344567777777777777777777777777766553
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00018 Score=56.69 Aligned_cols=101 Identities=18% Similarity=0.098 Sum_probs=87.2
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
-+.+.+++++|+..|.+.++.. | |...|..-..+|.+.|.++.|.+-.+..+..++ ....+|..|..+|.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHH
Confidence 3567889999999999999986 5 567788889999999999999999999999998 88899999999999
Q ss_pred HcCCChHHHHHHHHhCCCccCHhHHHHHHHH
Q 018582 320 AAGRTSPVMLRRLKMEKVEVSEASKKLLEAI 350 (353)
Q Consensus 320 ~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~ 350 (353)
..|++++++-..-+...+.|+..++..=+.+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999888887777888899999887655443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.0021 Score=44.49 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHcc
Q 018582 65 ALAAVNDISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQT 140 (353)
Q Consensus 65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 140 (353)
++-..|+.++|..+|++....| .... ...+-.+...+...|++++|..+|++.....+.+ +......+..++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555555555555555544 2222 2233344555555555555555555554432210 111112222344455
Q ss_pred CCHHHHHHHHHHH
Q 018582 141 GNLSEVYRIWRSL 153 (353)
Q Consensus 141 ~~~~~a~~~~~~~ 153 (353)
|+.++|++.+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555443
No 181
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0031 Score=52.22 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=40.3
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322 (353)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (353)
.+.|.+..|.+.+.+.+..... ...|+...|........+.|+..+|..--++..+.++ .-...|..-..++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~---n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPS---NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCcc---ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHH
Confidence 3556666666666665554311 1224445555555555566666666666655555443 22333333333333334
Q ss_pred CChHHH
Q 018582 323 RTSPVM 328 (353)
Q Consensus 323 ~~~~~~ 328 (353)
+|.+++
T Consensus 336 ~~e~AV 341 (486)
T KOG0550|consen 336 KWEEAV 341 (486)
T ss_pred HHHHHH
Confidence 444444
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.80 E-value=0.00017 Score=44.69 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCC
Q 018582 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEK-DVDGAEGFLEILKKAVD 304 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 304 (353)
+..+|..+...+...|++++|+..|++.++.. | +...|..+..++.+.| ++++|.+.+++..+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888888999999999999999999986 5 5778888888999998 79999999998887654
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=0.00018 Score=43.98 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=50.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+...+.+.|++++|.+.|+.+++.. | +...+..+..++...|++++|...|+++.+..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567888999999999999999987 5 578888899999999999999999999988776
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.0028 Score=43.89 Aligned_cols=57 Identities=25% Similarity=0.191 Sum_probs=28.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 205 GAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
.++-..|+.++|..+|++....|.... ...+-.+..++...|++++|..++++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555443322 123334444555555555555555555544
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=0.00012 Score=45.31 Aligned_cols=61 Identities=30% Similarity=0.366 Sum_probs=50.2
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 312 (353)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (353)
...|++++|+++|+.+.... | +...+..+..+|.+.|++++|..+++.+....+ .++..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP-DNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT-THHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CHHHHHH
Confidence 46789999999999999986 5 677888899999999999999999999998886 4444333
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0038 Score=49.70 Aligned_cols=106 Identities=11% Similarity=0.024 Sum_probs=84.3
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC
Q 018582 154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP 230 (353)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p 230 (353)
...++ -|...|..|..+|...|+.+.|..-|....+... +|...+..+..++.... .-.++..+|+++..... -
T Consensus 149 L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~ 225 (287)
T COG4235 149 LQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-A 225 (287)
T ss_pred HHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-c
Confidence 33444 4778899999999999999999999999887653 37777777777665432 45688999999988743 3
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
|+.+...+...+...|++.+|...|+.|.+..
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66777778888999999999999999999986
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.006 Score=47.52 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
++.++.-.|.+.-....+.+.++..++.++.....|.+.-.+.|+.+.|...|+...
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444555555555554443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=0.00016 Score=44.75 Aligned_cols=53 Identities=30% Similarity=0.506 Sum_probs=26.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
..|++++|.++|+++....+. +...+..+..+|.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345555555555555544222 44444455555555555555555555555544
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.71 E-value=0.0003 Score=43.00 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=21.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
.+.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|...|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444443322 33344444444444444444444444443
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.00038 Score=43.12 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC-CHHHHHHHHHH
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRS 152 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 152 (353)
|..+...+.+.|++++|+..|++..+..+. +...|..+..+|...| ++++|++.+++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 333333334444444444444443333222 2333333333333333 33444433333
No 191
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.69 E-value=0.001 Score=46.46 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcC---------CCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-c
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG---------RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-A 302 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 302 (353)
.++..++.++++.|+.+....+++..-.-+ .++.++..|+..+..+++.+|+..|++..|.++.+.+.+ -
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555544432221 445556889999999999999999999999999999877 3
Q ss_pred CCCCChhhhHHHHHHHHHcCC
Q 018582 303 VDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+++.+..+|..|+.-....-+
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 455567889999887655544
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0076 Score=48.07 Aligned_cols=123 Identities=14% Similarity=0.081 Sum_probs=93.7
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 018582 113 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---KDLPGAEKCFKEWE 189 (353)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 189 (353)
.-++.-...++. |...|-.|...|...|+.+.|...|....+..+ ++...+..+..++... ....++..+|+++.
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333443444554 889999999999999999999999999877643 3556666666655443 34567999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 190 SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
+.++. |+.+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 98755 88888889999999999999999999999873 33445555554
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.016 Score=45.32 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=101.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH-----H
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV-----M 203 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 203 (353)
..+.++..+...|.+.-...++++.++..++.++...+.+++.-.+.|+.+.|...|+++.+..-..|...++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566777777888999999999999988777888889999999999999999999998876433334333333 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
...|...+++.+|...+.++...+.. |+...|.-.-+..-.|+...|++.++.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34566678899999999988876422 45555555555566789999999999999876
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.58 E-value=0.0022 Score=51.37 Aligned_cols=102 Identities=10% Similarity=0.056 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS 272 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (353)
...|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+.+.... + ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s--~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--S--PKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C--cch
Confidence 3445555555566788899998888888763 332 45667778888889999999999998876411 0 112
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 273 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
...+..+...+...|+.+.|.++++.+.+..|
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45555666777788999999999998888765
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.57 E-value=0.0045 Score=45.03 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HhCCCCChhH
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR-----LAFPNTANIS 164 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 164 (353)
..++..+...|+++.|..+.+.+....+. +...|..+|.+|...|+..+|.+.|+.+. +-|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34555566666666666666666665443 56666666666666666666666666543 2355555543
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.57 E-value=0.0011 Score=54.87 Aligned_cols=271 Identities=13% Similarity=0.031 Sum_probs=167.2
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCcHHHHHHHHH
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMK----RDGRVAADWTTFSNLAS 100 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~ 100 (353)
.-+++.|+......+|+...+.|. -|. ..|..+.++|.-.+++++|+++...=. ..|.-.-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 358899999999999999998772 232 356677778888888999988654211 11111112223334556
Q ss_pred HHHhcCCHHHHHHHHHHH----HHccCC-CCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHH
Q 018582 101 IYVEAGLFEKAERALKEL----ENRNAH-RDLSAYQFLITLYGQTGNL--------------------SEVYRIWRSLRL 155 (353)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~ 155 (353)
.+--.|.+++|.-...+- .+.|-. ....++-.+...|...|+. +.|.++|.+-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 666667777776543322 111111 1234555566666655542 344445443211
Q ss_pred ----hCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHH----hcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHH-
Q 018582 156 ----AFP-NTANISYLNMIQVLVNLKDLPGAEKCFKEWE----SGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERAR- 224 (353)
Q Consensus 156 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~- 224 (353)
.|- ..-...|..+.+.|.-.|+++.|....+.-. +.|- ......+..|..++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111 1122456667777777889999887766532 2221 1234677888999999999999999888644
Q ss_pred ---hcCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582 225 ---RRGA-DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300 (353)
Q Consensus 225 ---~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 300 (353)
+.|- .....+.-+|...|.-..++++|+.++.+-+...-+.. ...-....+.+|..+|...|..+.|+.+.+.-+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2221 12344556778888888899999999887554310000 011346788999999999999999998877655
Q ss_pred h
Q 018582 301 K 301 (353)
Q Consensus 301 ~ 301 (353)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.025 Score=43.76 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=102.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT--ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 206 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 206 (353)
..-.....+...|++.+|.+.|+.+....+.. .....-.++.++.+.|+++.|...++...+.-+......+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34445566778899999999999998875432 2235567788889999999999999998876544333333333333
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582 207 YAKEGRLENAEELKERARRRGAD---PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283 (353)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (353)
.+......... ....... --...+..++.-|-...-..+|...+..+... .-. .--.+.+-|
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---------la~-~e~~ia~~Y 151 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---------LAE-HELYIARFY 151 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---------HHH-HHHHHHHHH
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---------HHH-HHHHHHHHH
Confidence 22211111110 0000000 00123444555555555566666655555443 111 112356679
Q ss_pred HhcCChhhHHHHHHHHHhcCCCC--ChhhhHHHHHHHHHcCCCh
Q 018582 284 EQEKDVDGAEGFLEILKKAVDDL--GVEVFEPLIRTYAAAGRTS 325 (353)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 325 (353)
.+.|.+..|..-++.+++.-|.. .......++.+|.+.|...
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 99999999999999999876521 2245677888888888743
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.0057 Score=49.07 Aligned_cols=98 Identities=10% Similarity=0.086 Sum_probs=57.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcHHHHHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVMI 204 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li 204 (353)
.|...+....+.|++++|...|+.+....+... ...+..+..+|...|++++|...|+.+.+..+. .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555677777777777666543221 235556666777777777777777776643221 1233444455
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 018582 205 GAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
..+...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5666677777777777777665
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.034 Score=49.61 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=131.2
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHH----------HHHhcCChhHHHHHHHHHHHcCCC
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR----------ALAAVNDISGAERVIEEMKRDGRV 88 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----------~~~~~~~~~~a~~~~~~~~~~~~~ 88 (353)
|.+..|..|.......-.++.|...|-+.... |.......+-. .-+--|.+++|.++|-++-++.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 66667777777666666666666666544331 12111111111 1122366777777776665543
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS 164 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (353)
..+..+.+.|++-...++++. .|-.. -..+|+.+...+.....|++|.+.|..-. +.
T Consensus 765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------~~-- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------DT-- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ch--
Confidence 355666666776665555442 11111 13466777777777777777777766431 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244 (353)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 244 (353)
...+.++.+...+++.+.+...+ +-+....-.+.+++.+.|.-++|.+.|-+-. .|. ..+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHH
Confidence 23455566666666555554443 3355566678888888888888888775532 122 34566777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcccHHHH--------------HHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI--------------RTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.++|.+|.++-++..- |...+. .--|..+.+.|..-.|.+++.+|.+
T Consensus 891 LnQW~~avelaq~~~l----------~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQL----------PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7788888777655322 222221 1123445667776667777766665
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.41 E-value=0.059 Score=45.25 Aligned_cols=169 Identities=11% Similarity=-0.022 Sum_probs=100.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 018582 131 QFLITLYGQTGNLSEVYRIWRSLRLAF---PNTANISYLNMIQVLVN---LKDLPGAEKCFKEWESGCATYDIRVTNVMI 204 (353)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 204 (353)
..++-+|-...+++..+++.+.+...- +.-....-....-++.+ .|+.++|.+++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344456778888888888888876541 11111222234455566 788888888888866555566777887777
Q ss_pred HHHHhc---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC-hH---HHHHHH---H-HHHHcCCCCCC
Q 018582 205 GAYAKE---------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD-MK---LAVDCL---E-KAIDTGRGDGG 267 (353)
Q Consensus 205 ~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~---~a~~~~---~-~~~~~~~~~~~ 267 (353)
+.|-.. ...++|...|.+.-+. .||..+=-.+...+...|. .+ +..++- . .+.+.|...
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~-- 300 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE-- 300 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc--
Confidence 766431 2367788888876654 3444332222222222222 22 222222 1 222233210
Q ss_pred CCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 268 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
-..+-..+.+++.++.-.|+.+.|.+..+++....+
T Consensus 301 -~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 301 -KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred -ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 124566778889999999999999999999998754
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.055 Score=44.84 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHH
Q 018582 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 280 (353)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (353)
+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... . -++.-|..++
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--------KsPIGyepFv 244 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--------KSPIGYEPFV 244 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--------CCCCChHHHH
Confidence 333444555666666555544432 35666666666666666666655544321 1 1224455566
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChH
Q 018582 281 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP 326 (353)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (353)
.+|.+.|+..+|.++..+ + + +..-+..|.+.|++.+
T Consensus 245 ~~~~~~~~~~eA~~yI~k-----~-~----~~~rv~~y~~~~~~~~ 280 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPK-----I-P----DEERVEMYLKCGDYKE 280 (319)
T ss_pred HHHHHCCCHHHHHHHHHh-----C-C----hHHHHHHHHHCCCHHH
Confidence 666666666666665554 1 1 1445555555565433
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.03 Score=41.39 Aligned_cols=134 Identities=13% Similarity=0.070 Sum_probs=97.1
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CChhhHH
Q 018582 158 PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PNAKTWE 236 (353)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~ 236 (353)
..|+...-..+..+....|+..+|...|++....-...|....-.+.++....+++..|...++.+.+.... -++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 345666666778888888888888888888887766777778888888888888888888888887765311 1123445
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (353)
.+.+.+...|.+.+|..-|+...... |+...-......+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--------pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--------PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66788888888888888888888875 66665555566677777766665544433
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.28 E-value=0.0028 Score=39.68 Aligned_cols=57 Identities=25% Similarity=0.359 Sum_probs=32.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
..|.+.+++++|.++++++...++. +...+......+.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455566666666666666655322 44555555556666666666666666666554
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.28 E-value=0.081 Score=44.00 Aligned_cols=277 Identities=16% Similarity=0.092 Sum_probs=150.5
Q ss_pred HHHHHHHHHh--cCCcchHHHHHHHHHHCCCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCcHHH--HHH
Q 018582 24 FNSLMTLYAK--TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA--LAAVNDISGAERVIEEMKRDGRVAADWTT--FSN 97 (353)
Q Consensus 24 ~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ 97 (353)
|..|-.++.. .|+-..|.++-.+-.+. +.-|......++.+ ..-.|+++.|.+-|+.|... |.... ...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHH
Confidence 5555555544 45666666655544322 33455555555543 44568999999999988863 33322 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChh--HHHHHHHHHH-
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANI--SYLNMIQVLV- 173 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~- 173 (353)
|.-..-+.|+.+.|.+.-+.....-+. -...+...+...+..|+|+.|+++.+.-++.. +.++.. .-..++.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333344678888888887777654433 45677888888899999999999888765542 233332 1122222211
Q ss_pred -h-cCChhHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582 174 -N-LKDLPGAEKCFKEWESGCATYDIRV-TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 250 (353)
Q Consensus 174 -~-~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 250 (353)
. ..+...|...-.+..+. .||... -..-..++.+.|+..++-.+++.+-+..+.|+. + .+..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--c
Confidence 1 12334444444444433 333221 122345677777888888888877776444432 2 1122334443 3
Q ss_pred HHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 251 AVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
+..-+++..+..- ++| +....-.+..+....|++..|..--+...... |....|..|.+.-...
T Consensus 311 a~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--pres~~lLlAdIeeAe 375 (531)
T COG3898 311 ALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--PRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--chhhHHHHHHHHHhhc
Confidence 3444444333310 123 34555566666666777776666555544433 4555566665555443
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.26 E-value=0.0022 Score=40.18 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=21.3
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
|.+.++++.|.++++.+...++. +...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444333322 333333344444444444444444444433
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.24 E-value=0.00082 Score=42.83 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.+++.+...|...|++++|++.|++..+. ....+...|+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56788888899999999999999888765 1100001233 56788999999999999999999998765
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.05 Score=40.26 Aligned_cols=103 Identities=16% Similarity=0.030 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLN 167 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 167 (353)
.|+...--.|..++.+.|+..+|...|++....-..-|....-.+.++....+++..|...++.+.+..+. .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555556666666666666665554333344555555555555556666666555555443210 01122233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 018582 168 MIQVLVNLKDLPGAEKCFKEWESG 191 (353)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~ 191 (353)
+...+...|++..|+..|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 445555555555555555555544
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.11 Score=43.63 Aligned_cols=262 Identities=12% Similarity=-0.047 Sum_probs=123.9
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH
Q 018582 30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 109 (353)
Q Consensus 30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (353)
.+.+..++..|+..+....+.. +-+..-|..-+..+...+++++|.--.+.-++.. +-........-+++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHH
Confidence 4455566666777766666643 2233344445555555566666555544443321 111112222233333333333
Q ss_pred HHHHHHH---------------HHHHccC-CCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582 110 KAERALK---------------ELENRNA-HRDLSAYQFLI-TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 172 (353)
Q Consensus 110 ~a~~~~~---------------~~~~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (353)
+|...++ .+..... +|.-..|..+- ..+...|++++|...-....+.... +......-..++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence 3332222 1111100 12222232221 3344566666666655554443221 122111112233
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCChhhHHHH
Q 018582 173 VNLKDLPGAEKCFKEWESGCATYDI-----------RVTNVMIGAYAKEGRLENAEELKERARRR---GADPNAKTWEIF 238 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l 238 (353)
.-.++.+.+...|++.+..++.... ..+..=.+-..+.|++..|.+.|.+.+.. ++.|+...|...
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 3455666666666666554322110 11111122234567777777777776643 234444555555
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
.....+.|+.++|+.--++..+.+ |. ...+..-..++...++|++|.+-++...+..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566667777777777766666543 22 2333334445566677777777777666543
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.18 E-value=0.1 Score=43.29 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 018582 163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242 (353)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 242 (353)
.+.+..+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++..++... + -.+.-|..++..|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 355666777888899888888876653 46999999999999999999988876543 1 2458899999999
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
.+.|+..+|..++.++ ++ ..-+..|.++|++.+|.+.-.+
T Consensus 248 ~~~~~~~eA~~yI~k~------------~~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------------PD----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC------------Ch----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998772 22 3456778899999999776443
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.16 E-value=0.12 Score=43.51 Aligned_cols=168 Identities=13% Similarity=0.060 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRN---AHRDLSAYQFLITLYGQ---TGNLSEVYRIWRSLRLAFPNTANISYL 166 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (353)
.+...++-+|....+++...++.+.+.... +.-....-....-++-+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333456667889999999999999997641 11123333344456666 899999999999966666667888998
Q ss_pred HHHHHHHhc---------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----hHHHHHHH---HH-HHhcCC-
Q 018582 167 NMIQVLVNL---------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR----LENAEELK---ER-ARRRGA- 228 (353)
Q Consensus 167 ~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~a~~~~---~~-~~~~~~- 228 (353)
.+...|-.. ...++|...|.+.-... |+...--.++..+...|. ..+..++- .. +.++|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 888776431 23566777777654432 332222222222333332 12223332 22 223332
Q ss_pred --CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 229 --DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 229 --~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
..+--.+..++.++.-.|+.++|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2344556788899999999999999999999875
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=97.11 E-value=0.059 Score=39.26 Aligned_cols=91 Identities=14% Similarity=-0.018 Sum_probs=65.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582 169 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 248 (353)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 248 (353)
..-+...|++++|..+|+-+.-.++- +..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33455678888888888887765533 666777777888888888888888877654432 2455566677788888888
Q ss_pred HHHHHHHHHHHHc
Q 018582 249 KLAVDCLEKAIDT 261 (353)
Q Consensus 249 ~~a~~~~~~~~~~ 261 (353)
+.|...|......
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887774
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.09 E-value=0.0064 Score=44.21 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=66.9
Q ss_pred HhcCCcchHHHHHHHHHHC--C-CCCC----c--------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 018582 32 AKTGHPEKIPAIIQEMKAS--S-IMPD----S--------------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA 90 (353)
Q Consensus 32 ~~~~~~~~a~~~~~~m~~~--~-~~p~----~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 90 (353)
...++.+.+.+.+.++... | +-|+ . .+...++..+...|+++.|..+.+.+... .|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~ 94 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL--DPY 94 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCC
Confidence 4567777777777777653 2 1122 1 12344556677889999999999999997 688
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HccCCCCHHHH
Q 018582 91 DWTTFSNLASIYVEAGLFEKAERALKELE-----NRNAHRDLSAY 130 (353)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 130 (353)
+...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 89999999999999999999999999873 45788876543
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.89 E-value=0.0057 Score=38.87 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRD----GRVAAD-WTTFSNLASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (353)
|+.+...+...|++++|+..|++..+. |...|+ ..++..+..++...|++++|++.+++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444555555555544444321 101111 234444555555555555555555443
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.86 E-value=0.043 Score=38.48 Aligned_cols=80 Identities=6% Similarity=0.057 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------ccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELEN---------------RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
..++..++.++++.|+++....+++..-. ....|+.....+++.+|+..|++..|+++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34555566666666666666655554421 112344555555555555555555555555554433
Q ss_pred -CCCCChhHHHHHHHH
Q 018582 157 -FPNTANISYLNMIQV 171 (353)
Q Consensus 157 -~~~~~~~~~~~l~~~ 171 (353)
+++.+..+|..|++-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 233334444444443
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.011 Score=49.08 Aligned_cols=262 Identities=14% Similarity=0.078 Sum_probs=157.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHH--HHc--cC-CCCHHHHHHHH
Q 018582 64 RALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKEL--ENR--NA-HRDLSAYQFLI 134 (353)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~l~ 134 (353)
.-+++.|+......+|+..++.| ..| ..+|..|.++|.-.+++++|+++...= ..+ |- .-...+...|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34789999999999999999987 233 345777888888889999999865421 110 00 01222334455
Q ss_pred HHHHccCCHHHHHHHHHHH----HHhCC-CCChhHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 018582 135 TLYGQTGNLSEVYRIWRSL----RLAFP-NTANISYLNMIQVLVNLKD--------------------LPGAEKCFKEWE 189 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 189 (353)
+.+.-.|.+++|+-.-.+- ++.|- ......+-.+...|...|+ ++.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 5666678888877643331 22221 1123345556666655442 223344443311
Q ss_pred ----hcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 018582 190 ----SGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERAR----RRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259 (353)
Q Consensus 190 ----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 259 (353)
+.|- -..-..|..|...|.-.|+++.|+..-+.-+ +.|-+ ..-..+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0112345556666666788999887654422 22211 123467778888899999999999988765
Q ss_pred HcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh----c-CCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 260 DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK----A-VDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
...+.-.. -.....+..+|...|.-..+++.|+.++.+-.. . +..-...++-+|..+|...|....++
T Consensus 263 ~LAielg~-r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 263 NLAIELGN-RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHhcc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 44221000 013455677888888888899999988775433 1 22245678889999998888744443
No 216
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.80 E-value=0.0047 Score=34.13 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
.++..+...|.+.|++++|.++++++.+..| .|+..|..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence 4677889999999999999999999999999 88888877753
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.79 E-value=0.18 Score=44.57 Aligned_cols=164 Identities=14% Similarity=0.035 Sum_probs=108.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh------HHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI------SYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIR 198 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 198 (353)
....+++...=.|+-+.+++.+.+..+.+---.+. .|..++..++. ..+.+.|.++++.+.+.- |+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 34455666677899999999988765532211121 34444444443 346678999999999874 3444
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582 199 VTN-VMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 274 (353)
Q Consensus 199 ~~~-~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 274 (353)
.|. .-.+.+...|++++|.+.|++..... .......+--+...+.-.++|++|.+.|..+.+... .+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-------WSka 340 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-------WSKA 340 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-------cHHH
Confidence 443 33566778899999999999765311 111234455566778888999999999999999752 4555
Q ss_pred HHHHHHH-HHHhcCCh-------hhHHHHHHHHHh
Q 018582 275 TIRTFMR-HFEQEKDV-------DGAEGFLEILKK 301 (353)
Q Consensus 275 ~~~~l~~-~~~~~~~~-------~~a~~~~~~~~~ 301 (353)
+|..+.. ++...|+. ++|.++|+++..
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 5555544 34567777 888888887654
No 218
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.77 E-value=0.23 Score=40.73 Aligned_cols=131 Identities=9% Similarity=0.245 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCh
Q 018582 108 FEKAERALKELENRNAHRDLSAYQFLITLYGQ--TGN----LSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKDL 178 (353)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 178 (353)
+++...+++.|.+.|+..+..+|-+....... ..+ ..+|..+|+.|++..+ .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677888888888776555543222222 222 3578888999988765 3445566655543 33333
Q ss_pred ----hHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 179 ----PGAEKCFKEWESGCATYDI--RVTNVMIGAYAKEGR--LENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 179 ----~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
+.++.+|+.+.+.|+..+- +..+.++........ ...+..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4567778888876655432 333333333322222 4477888889999888887777765543
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.77 E-value=0.17 Score=44.97 Aligned_cols=263 Identities=15% Similarity=0.127 Sum_probs=135.9
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHH---------HHHHHHCCCCCCcchHHHHHHHHHhcCChh--HHHHHHHHHHHcCC
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAI---------IQEMKASSIMPDSYTYNVWMRALAAVNDIS--GAERVIEEMKRDGR 87 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~ 87 (353)
|....+.+-+..|...|.+++|.++ |+.+... ..+.-.++..=.+|.+.++.. +...-++++.++|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg- 630 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG- 630 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC-
Confidence 4445566666777888888877653 1111111 112233444445566555543 3344456677777
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh--CC-CC
Q 018582 88 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FP-NT 160 (353)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~ 160 (353)
..|+... +...++-.|.+.+|-++|.+--..+-. .|...|. ..+-+...|..++-..+.++-.+- .. +|
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 6677654 566666777777777777653111000 0111111 223344455544444433321110 11 12
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHH------HHhcC---CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKE------WESGC---ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 231 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 231 (353)
......+...|+.++|..+.-+ +.+-+ -..+..+...+...+.+...+..|-++|..|-..
T Consensus 707 -----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----- 776 (1081)
T KOG1538|consen 707 -----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----- 776 (1081)
T ss_pred -----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence 1233445566777666655322 11111 0123344444455555566677777777776532
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG---DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
..+++.....++|.+|..+-++.-+.-.. |-..+.....-+.-.-.+|.+.|+..+|.++++++...
T Consensus 777 ----ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 ----KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ----HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 24566777888888888887765443200 00001111122344456788888889998888887653
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.76 E-value=0.13 Score=37.56 Aligned_cols=88 Identities=14% Similarity=-0.033 Sum_probs=57.0
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 215 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (353)
-+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 344667777777777776555442 4444556666666677777777777765544322 44445556777777777777
Q ss_pred HHHHHHHHHh
Q 018582 216 AEELKERARR 225 (353)
Q Consensus 216 a~~~~~~~~~ 225 (353)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.75 E-value=0.27 Score=41.11 Aligned_cols=273 Identities=15% Similarity=0.118 Sum_probs=167.5
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 59 YNVWMRALA--AVNDISGAERVIEEMKRDGRVAADWTTFSNLASI--YVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 59 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
|..|-.++. ..||-..|.+.-.+..+. +..|......|+.+ -.-.|+++.|.+-|+.|... ++.-..-...|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHH
Confidence 444444443 457777888777666543 44555544444443 34579999999999999862 111122233444
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcHH--HHHHHHHHHH---
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-ATYDIR--VTNVMIGAYA--- 208 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~li~~~~--- 208 (353)
-.-.+.|+.+.|..+-+..-..-+. -.-.+...+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 4455789999999888877665443 23567888999999999999999999865422 233321 1122332211
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcC
Q 018582 209 KEGRLENAEELKERARRRGADPNAKTW-EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 287 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 287 (353)
-.-+...|...-.+..+ +.||...- ..-..++.+.|+..++-.+++.+.+.. |.+.++...+ ..+.|
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--------PHP~ia~lY~--~ar~g 308 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--------PHPDIALLYV--RARSG 308 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--------CChHHHHHHH--HhcCC
Confidence 12345566666555544 45665433 334578899999999999999999987 6666654433 34555
Q ss_pred ChhhH-HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHH
Q 018582 288 DVDGA-EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLE 348 (353)
Q Consensus 288 ~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~ 348 (353)
+.... .+-.+.+....+ .|......+..+-...|++..+--..-......|....|-+|-
T Consensus 309 dta~dRlkRa~~L~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlA 369 (531)
T COG3898 309 DTALDRLKRAKKLESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLA 369 (531)
T ss_pred CcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHH
Confidence 53222 122334444555 6778888888888888885554433333444566655555443
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.73 E-value=0.06 Score=45.96 Aligned_cols=64 Identities=13% Similarity=-0.099 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI---RVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
...+..+..+|...|++++|...|++..+..+. +. .+|..+..+|...|+.++|...+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666666666667777777776666655433 22 24666666666667777776666666653
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.72 E-value=0.13 Score=45.47 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----HHHHHHHHHHHHh----cCCHH
Q 018582 39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD-----WTTFSNLASIYVE----AGLFE 109 (353)
Q Consensus 39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~ 109 (353)
-..-+|+-+... +||. +..++...+-.||-+.+++.+.+..+.+++.-. .-.|...+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 344555555553 3333 445666666777888888877776664322221 1234555544443 45677
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHh---CCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 018582 110 KAERALKELENRNAHRDLSAYQFL-ITLYGQTGNLSEVYRIWRSLRLA---FPNTANISYLNMIQVLVNLKDLPGAEKCF 185 (353)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 185 (353)
.|.++++.+.+. -|+...|... .+.+...|+.++|++.|+..... -.+.....+--+.-++.-..+|++|...|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 888888888775 3454444333 35566788888888888864431 12223344555666777888888888888
Q ss_pred HHHHhcCCCCcHHHHHHHH-HHHHhcCCh-------HHHHHHHHHHHh
Q 018582 186 KEWESGCATYDIRVTNVMI-GAYAKEGRL-------ENAEELKERARR 225 (353)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~a~~~~~~~~~ 225 (353)
..+.+.. ..+..+|.-+. .++...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888654 33444444333 334456666 788888887653
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.46 Score=42.88 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------
Q 018582 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT----------- 194 (353)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 194 (353)
+....-.+.+++.+.|.-++|.+.|-+. + .| ...+..|...++|.+|.++-+...-..+.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 4445566667777777777777665432 1 12 13445566666666666655442210000
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582 195 YDIRVTNVMIGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (353)
.+..+ ..-|..+.+.|+.-.|-+++.+|-+
T Consensus 922 ~~~~~-~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 922 ADANH-MEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence 00001 1235566777777777777776653
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.099 Score=42.58 Aligned_cols=151 Identities=14% Similarity=0.085 Sum_probs=109.8
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH----HHHHHHHHHHhcCCH
Q 018582 33 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT----TFSNLASIYVEAGLF 108 (353)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 108 (353)
..|++.+|-..++++.+. .|.|...+...=++|...|+...-...++++... -.++.. +.....-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357788888888888875 5677778888888899999999999999888765 234433 334455566788999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCChhHHHHHH
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---TANISYLNMIQVLVNLKDLPGAEKCF 185 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 185 (353)
++|++.-++..+.+.. |..+-.++...+...|++.++.++..+-...-.. .-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999988877654 7788888888899999999999887754322110 11122333344556668999999999
Q ss_pred HH
Q 018582 186 KE 187 (353)
Q Consensus 186 ~~ 187 (353)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 86
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.15 Score=43.64 Aligned_cols=60 Identities=13% Similarity=-0.061 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
.++.+..++...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++..+
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555666666666666665553 2332 2355555666666666666666655554
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.51 E-value=0.45 Score=40.64 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRG-ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 275 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
..+|...+..-.+...++.|..+|-+..+.| +.+++..+++++.-++. |+...|..+|+--+..- ||...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--------~d~~~ 467 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--------PDSTL 467 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--------CCchH
Confidence 3455666666666666677777777776666 45566666666665543 56666667666655543 44332
Q ss_pred -HHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhhHHHHHHHHHcCC
Q 018582 276 -IRTFMRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 276 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 323 (353)
..-.+.-+...++-+.|..+|+...+.-. ..-...|..++.--..-|+
T Consensus 468 y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 468 YKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence 23445555666666666666664333111 0113456666665555565
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.067 Score=44.67 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 312 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (353)
.+++.+.-+|.+.+++..|++.-.+.+..+ .+|....-.-..++...|+++.|+..|+++++..| .|..+-+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~ 329 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARA 329 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 345556666677777777777777777765 14566666667777777777777777777777776 5655555
Q ss_pred HHHHHHHHcCC---ChHHHHHHHH
Q 018582 313 PLIRTYAAAGR---TSPVMLRRLK 333 (353)
Q Consensus 313 ~l~~~~~~~g~---~~~~~~~~m~ 333 (353)
.|+.+--+..+ .+..++..|.
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555444333 3345555554
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.47 E-value=0.065 Score=42.48 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582 213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 248 (353)
Q Consensus 213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 248 (353)
-+-+++++++|...|+-||..+-..++.++.+.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 345788999999999999999999999999877653
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.44 E-value=0.63 Score=41.67 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=120.2
Q ss_pred HHHHHHHHhcCCc--chHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582 25 NSLMTLYAKTGHP--EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102 (353)
Q Consensus 25 ~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (353)
+.-=.+|.+..+. -+.+.-+++++++|-.|+... +...|+-.|.+.+|-++|.+--.. +..+.+|
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e----------nRAlEmy 668 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE----------NRALEMY 668 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch----------hhHHHHH
Confidence 3333445444332 233334556667776677643 345577788899998888643221 1344445
Q ss_pred HhcCCHHHHHHHHHH-------HH--Hc-cCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------HHHhCCC---CChh
Q 018582 103 VEAGLFEKAERALKE-------LE--NR-NAHRDLSAYQFLITLYGQTGNLSEVYRIWRS------LRLAFPN---TANI 163 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~-------~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~ 163 (353)
...+.+|.|.+++.. |. ++ ....+..--.+....+..+|+.++|..+.-+ +.+.+.+ .+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 555555555554422 10 00 0000111112234556677888887765321 2222222 2344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh---------
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT--------- 234 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------- 234 (353)
+...+...+.+...+..|-++|.+|-.. ..+++.....+++.+|+.+-+...+. .||+..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 5666666677778888899999887532 34677888899999999998886653 344321
Q ss_pred --HHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 235 --WEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 235 --~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
|...-.+|.+.|+-.+|..+++.+....
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 2233345666677777777776665543
No 231
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.27 E-value=0.25 Score=35.20 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582 103 VEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 172 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (353)
.+.|++++|.+.|+.+..+-+.. ...+--.++.+|.+.+++++|...+++..+.++.-...-|...+.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 34555666665555555432221 22334445555555555555555555555554433333344444333
No 232
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.26 E-value=0.63 Score=39.80 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCC----CCCCcchHHHHHHHHHhc
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASS----IMPDSYTYNVWMRALAAV 69 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~ 69 (353)
+..+..+.+.|++.++..+++++...= ...+..+|+.++-.++++
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 456677888999999999998887643 337888888755444433
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.9 Score=41.38 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHH
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 278 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..++|++-+++-+... .+.-|.-
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------------sPIGy~P 749 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------------SPIGYLP 749 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------------CCCCchh
Confidence 33444455556677777776665544 4566777777777777777766555543322 1334555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChH
Q 018582 279 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP 326 (353)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (353)
++..|.+.|+.++|.+++.+... . .-...+|.+.|+..+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~--l-------~ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG--L-------QEKVKAYLRVGDVKE 788 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC--h-------HHHHHHHHHhccHHH
Confidence 66777777777777777765321 1 145556666666433
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.24 E-value=0.41 Score=37.42 Aligned_cols=226 Identities=18% Similarity=0.104 Sum_probs=126.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHccCCHHHHHH
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NAHRDLSAYQFLITLYGQTGNLSEVYR 148 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (353)
+....+...+...............+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444555554443200012455556666666666666666666665432 222344455555556666666666666
Q ss_pred HHHHHHHhCCCCChhHHHHHHH-HHHhcCChhHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582 149 IWRSLRLAFPNTANISYLNMIQ-VLVNLKDLPGAEKCFKEWESGCA--TYDIRVTNVMIGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (353)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665543322 112222222 56677777777777777644221 12233333344445566777777777777766
Q ss_pred cCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 226 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 226 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.........+..+...+...++++.|...+....... |+ ...+..+...+...+..+.+...+.......+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 5211134566667777777777788888887777764 43 33444444444466667777777777766555
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.16 Score=40.24 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCChHHH
Q 018582 141 GNLSEVYRIWRSLRLAFPN--TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVMIGAYAKEGRLENA 216 (353)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a 216 (353)
|++..|...|....+..+. -....+-.|..++...|++++|..+|..+.+.-++ .-+..+--|..+..+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 4455555555554444321 11123334555555555555555555544432211 1123344444444555555555
Q ss_pred HHHHHHHHhc
Q 018582 217 EELKERARRR 226 (353)
Q Consensus 217 ~~~~~~~~~~ 226 (353)
..+|+++.+.
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.26 Score=41.31 Aligned_cols=62 Identities=15% Similarity=0.061 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
++..+..++.+.+++..|.+.-++.+..+ ++|+...-.=..++...|+++.|+..|+.+++.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34444555555555555555555555444 224444444455555555555555555555543
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.07 E-value=0.17 Score=35.15 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCCCCcccHHHHHHHHHHHH
Q 018582 206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFE 284 (353)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 284 (353)
+....|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+. |.+ -..--..|..-...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~----trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ----TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHH
Confidence 3455677777777777666542 225566777777777777777777777776665 210 0001122333334566
Q ss_pred hcCChhhHHHHHHHHHhcCC
Q 018582 285 QEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~ 304 (353)
..|+-+.|..-|+...+.|.
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 67777777777776666655
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.03 E-value=0.53 Score=38.69 Aligned_cols=130 Identities=15% Similarity=0.231 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHHCCCCCCcchHHHHHHHHHh--cC----ChhHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHhcCC-
Q 018582 37 PEKIPAIIQEMKASSIMPDSYTYNVWMRALAA--VN----DISGAERVIEEMKRDGRVA--ADWTTFSNLASIYVEAGL- 107 (353)
Q Consensus 37 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~- 107 (353)
+++.+++++.|.+.|++-+..+|-+..-.... .. ....|..+|+.|++.-++- ++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566778888888887777666553333322 12 2445777888887753221 222233333222 3333
Q ss_pred ---HHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582 108 ---FEKAERALKELENRNAHRDL--SAYQFLITLYGQTGN--LSEVYRIWRSLRLAFPNTANISYLNM 168 (353)
Q Consensus 108 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (353)
.+.++.+++.+.+.|+..+- ...+.++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24455666666665555332 122222222222111 23566666666666666655555443
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.02 E-value=0.31 Score=33.99 Aligned_cols=64 Identities=14% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
......+......|+-++..+++.++.+. -.+++...-.+..+|.+.|+..++-+++.+..+.|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444555666666666666666666542 24555666666667777777777777777766666
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=95.96 E-value=0.86 Score=39.34 Aligned_cols=81 Identities=9% Similarity=-0.009 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 018582 72 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 151 (353)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (353)
..+|.++-++..+. .+.|......+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555555 3455555555555555556666666666666554433 33444444444555666666666666
Q ss_pred HHHH
Q 018582 152 SLRL 155 (353)
Q Consensus 152 ~~~~ 155 (353)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 6444
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.95 E-value=0.38 Score=34.54 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=38.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+.++.+.. ..+......++..|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 44444445555555555555544442 34445555555555432 2333333331 1223333445555555555
Q ss_pred hhHHHHHHHH
Q 018582 178 LPGAEKCFKE 187 (353)
Q Consensus 178 ~~~a~~~~~~ 187 (353)
++++.-++.+
T Consensus 85 ~~~~~~l~~k 94 (140)
T smart00299 85 YEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.58 Score=36.55 Aligned_cols=205 Identities=14% Similarity=0.142 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (353)
.|..-..+|....++++|...+.+..+. ...|...|. . ....+.|.-+.+++.+ .+.-...|+.....|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~k---lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSK---LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 4555666777778888887777666542 222332221 1 1234555556666655 334455667777778
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---CC--CCChhHHHHHHHHHHhcCC
Q 018582 103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA---FP--NTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 177 (353)
..+|..+.|-..+++.-+ ....-++++|+++|++.... +- ..-...+..+...+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 888887777777766532 12344566677766664322 11 1111234555566777777
Q ss_pred hhHHHHHHHHHH----hcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChH
Q 018582 178 LPGAEKCFKEWE----SGCATYD-IRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMK 249 (353)
Q Consensus 178 ~~~a~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~ 249 (353)
+++|-..+.+-. +-.--++ -..|...|-.|.-..++..|.+.++.-.+.+ -.-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 777665554422 1111111 1335555666677778999999998844321 122556777888877 456777
Q ss_pred HHHHHH
Q 018582 250 LAVDCL 255 (353)
Q Consensus 250 ~a~~~~ 255 (353)
++-+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 665554
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.95 E-value=0.05 Score=29.92 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582 97 NLASIYVEAGLFEKAERALKELENR 121 (353)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (353)
.+...|.+.|++++|.++|++..+.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.91 E-value=0.13 Score=40.86 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=53.7
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC----------------CHHHHHH
Q 018582 90 ADWTTFSNLASIYVE-----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG----------------NLSEVYR 148 (353)
Q Consensus 90 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 148 (353)
.|..+|-..+..+.. .+.++-....++.|.+.|++.|..+|+.|++.+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344444444444432 2344555555566666666666666666665543321 2244677
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582 149 IWRSLRLAFPNTANISYLNMIQVLVNLKDL 178 (353)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (353)
++++|...|+.||..+-..+++++.+.+..
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 888888888888888888888888766543
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.88 E-value=1 Score=39.46 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=67.6
Q ss_pred HHHhcCChhHHHHHHH--HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCC
Q 018582 65 ALAAVNDISGAERVIE--EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 142 (353)
Q Consensus 65 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (353)
...-.++++++.+..+ ++... ++ ..-.+.++..+-+.|-.+.|+++... +. .-.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~--i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPN--IP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhccc--CC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 3344555555555553 11111 22 22344555555556666666555322 11 11233345555
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
.+.|.++.++ ..+...|..|.....+.|+++-|++.|.+.. -+..|+-.|.-.|+.+...++.+.
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence 5555554332 1344556666666666666666666555422 123444455555555555555555
Q ss_pred HHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582 223 ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257 (353)
Q Consensus 223 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 257 (353)
....| -++....++.-.|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44432 233344444445555555555443
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.84 E-value=0.82 Score=40.01 Aligned_cols=157 Identities=16% Similarity=0.099 Sum_probs=96.0
Q ss_pred HHHhcCCcchHHHHHHHHH-HCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582 30 LYAKTGHPEKIPAIIQEMK-ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF 108 (353)
Q Consensus 30 ~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (353)
...-.++++++.+....-. -..+ +....+.+++-+-+.|-.+.|+++-..-. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence 3445677777777664111 1112 24447777777888888888877643221 244566678888
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+.. -|..++-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 8888776543 366788888888888888888888887642 2456666777788888877777776
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
...| . ++....++.-.|+.++..+++.+
T Consensus 400 ~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665 2 34555566667888887777765
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=95.82 E-value=1.1 Score=38.74 Aligned_cols=157 Identities=11% Similarity=0.006 Sum_probs=100.6
Q ss_pred hHH--HHHHHHHHhc-----CChhHHHHHHHHHHh-cCCCC-cHHHHHHHHHHHHhc---------CChHHHHHHHHHHH
Q 018582 163 ISY--LNMIQVLVNL-----KDLPGAEKCFKEWES-GCATY-DIRVTNVMIGAYAKE---------GRLENAEELKERAR 224 (353)
Q Consensus 163 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~ 224 (353)
..| ..++.+.... ...+.|..+|.+... +...| ....|..+..++... ....+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 5555554432 234567888888872 22233 345555554444322 23456777777777
Q ss_pred hcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 225 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 225 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
+.+. -|......+..+....++++.|...|++....+ |+ ..+|........-.|+.++|.+.+++..+..
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 7653 367777777777777888999999999999987 65 5566666666777899999999999988877
Q ss_pred CCCC-hhhhHHHHHHHHHcCC-ChHHH
Q 018582 304 DDLG-VEVFEPLIRTYAAAGR-TSPVM 328 (353)
Q Consensus 304 ~~~~-~~~~~~l~~~~~~~g~-~~~~~ 328 (353)
|..- .......++.|+..+- .+.++
T Consensus 403 P~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVPNPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHHHHHcCCchhhhHHH
Confidence 6322 2334444557776654 33344
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.81 E-value=1.1 Score=38.51 Aligned_cols=147 Identities=14% Similarity=0.111 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582 127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205 (353)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (353)
..+|...++...+..-.+.|..+|-+..+.+ ..++...+++++..++ .|+..-|..+|+.-...-.. +..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 4567777777777777888888888887777 4567777777777665 56777788888765443222 2333345666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582 206 AYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283 (353)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (353)
.+...++-+.|..+|+...++ +..+ ...|..+|+--..-|+...+..+=+++...- |...+...+...|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~--------pQen~~evF~Sry 545 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV--------PQENLIEVFTSRY 545 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc--------CcHhHHHHHHHHH
Confidence 677778888888888854432 1112 4577888887777888877777777777654 5554444444444
Q ss_pred H
Q 018582 284 E 284 (353)
Q Consensus 284 ~ 284 (353)
.
T Consensus 546 ~ 546 (660)
T COG5107 546 A 546 (660)
T ss_pred h
Confidence 3
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.68 Score=36.17 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=8.1
Q ss_pred HHHHhcCChhHHHHHHHH
Q 018582 170 QVLVNLKDLPGAEKCFKE 187 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~ 187 (353)
-.+.-..++..|...++.
T Consensus 198 lv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHhhHHHHHHHHHHhcc
Confidence 333344444445544444
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.25 Score=39.19 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-C-CHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGR-VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R-DLSAYQFLI 134 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 134 (353)
.|+.-+. +.+.|++..|...|...++... -.-....+--|..++...|+++.|..+|..+.+.-+. | -+.++-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 3355566666666666666420 0111233344666666666666666666666553322 1 134555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCC
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFP 158 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~ 158 (353)
....+.|+.++|..+|+++.+.-+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 666666677777777766666543
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.78 E-value=0.87 Score=37.26 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=128.6
Q ss_pred HHhcCCcchHHHHHHHHHHCC--CCCCcc------hHHHHHHHHHhcC-ChhHHHHHHHHHHHc----C---CCCCc---
Q 018582 31 YAKTGHPEKIPAIIQEMKASS--IMPDSY------TYNVWMRALAAVN-DISGAERVIEEMKRD----G---RVAAD--- 91 (353)
Q Consensus 31 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~----~---~~~~~--- 91 (353)
..+.|+.+.|..++.+..... ..|+.. .|+.-. .....+ +++.|...+++..+. + ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356789999999998887642 233322 233333 334455 888887777765543 1 12333
Q ss_pred --HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582 92 --WTTFSNLASIYVEAGLFE---KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL 166 (353)
Q Consensus 92 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (353)
..++..++.+|...+..+ +|.++++.+....+. .+..+..-+..+.+.++.+++.+.+.+|...-.. ....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 245677888888887755 456666666555443 3456666677777789999999999999876331 334455
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHhcCCCCcHH--HHHHHHHHH-HhcC--------ChHHHHHHHHHHHh-cCCCCCh
Q 018582 167 NMIQVLVNL--KDLPGAEKCFKEWESGCATYDIR--VTNVMIGAY-AKEG--------RLENAEELKERARR-RGADPNA 232 (353)
Q Consensus 167 ~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~-~~~g--------~~~~a~~~~~~~~~-~~~~p~~ 232 (353)
.++..+... .....+...+..+....+.|... .=..++... ...+ +.+....+++.+.+ .+.+.+.
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 555554222 23345666666666444444442 111222211 1111 14445555554332 2223333
Q ss_pred hhHH---HHH----HHHHccCChHHHHHHHHHHH
Q 018582 233 KTWE---IFS----DYYLRNGDMKLAVDCLEKAI 259 (353)
Q Consensus 233 ~~~~---~li----~~~~~~~~~~~a~~~~~~~~ 259 (353)
.+-. +++ ..+.+.++++.|.+.|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 222 34567899999999988654
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.75 E-value=0.48 Score=34.05 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (353)
..++..+...+.......+++.+...+ ..+...++.++..|++.+ .++....++. ..+......+++.|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 445555656666677777777766654 255556667777776553 2333333331 1122334446666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL-KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 208 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (353)
.+.++++.-++.++.. +...+..+... ++.+.|.++..+ ..+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 6666666666655411 11122222222 556666665554 114445555555544
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.67 E-value=0.45 Score=33.15 Aligned_cols=88 Identities=14% Similarity=-0.013 Sum_probs=38.1
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCChh---HHHHHHHHHHhcCCh
Q 018582 103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANI---SYLNMIQVLVNLKDL 178 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---~~~~l~~~~~~~~~~ 178 (353)
...|+.+.|++.|.+....-++ ...+||.-..++--.|+.++|++=+++..+. |.+ ... .|..-...|...|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence 3444555555555444433222 3444555445554455555555444444332 211 111 222223334445555
Q ss_pred hHHHHHHHHHHhcC
Q 018582 179 PGAEKCFKEWESGC 192 (353)
Q Consensus 179 ~~a~~~~~~~~~~~ 192 (353)
+.|..-|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555544444
No 254
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.65 E-value=0.59 Score=34.42 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=71.8
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH-HH--
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW-TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS-AY-- 130 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-- 130 (353)
+..+|...++ +++.+..++|+.-|..+.+.| ...-. -..-.......+.|+...|...|+++-.....|-.. -.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3344554444 345667777777777777765 22211 112223445566777777777777775543333322 11
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582 131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG 191 (353)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (353)
-.-.-.+...|.++....-.+.+-..+...-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1111234566667766666655543333222233344555556667777777777766543
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.64 E-value=1.3 Score=38.47 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC------------------
Q 018582 26 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR------------------ 87 (353)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------ 87 (353)
.+|.-.-+..+++.-++.-.+..+ +.|+-.+.-+++. --....+.++.++|++..+.|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 344444455555555555555555 3455433322221 1123446777777777665430
Q ss_pred -CCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 88 -VAAD----WTTFSNLASIYVEAGLFEKAERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 88 -~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
...+ ..+-..|..++.+.|+.++|.+.+++|.+..+.. .......|+.++...+.+.++..++.+..+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0001 1112345566667777777777777776543332 334566677777777777777777776543
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.60 E-value=1.4 Score=38.38 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSD 240 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~ 240 (353)
+-..+..++.+.|+.++|.+.++++.+..+. .+..+...|+.++...+.+.++..++.+-.+.. .|. ...|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHH
Confidence 3345667777889999999999998865433 245577788999999999999999998865432 223 345655443
Q ss_pred HHHccCC---------------hHHHHHHHHHHHHcC
Q 018582 241 YYLRNGD---------------MKLAVDCLEKAIDTG 262 (353)
Q Consensus 241 ~~~~~~~---------------~~~a~~~~~~~~~~~ 262 (353)
.....++ -..|.+.+.+..+.+
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 3322222 123567777777665
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.55 E-value=0.9 Score=35.86 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=95.4
Q ss_pred HHhcCCHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-
Q 018582 102 YVEAGLFEKAERALKELENRNAH--RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL- 178 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 178 (353)
-.+.|++++|.+.|+.+...-+. -...+--.++-++.+.++++.|+..+++.....+......|...|.+++.--.+
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34567777777777777654322 123344455566667777777777777766655443444455555554422111
Q ss_pred ------hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582 179 ------PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 252 (353)
Q Consensus 179 ------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 252 (353)
..+.+.+..+ ..++.-|=...-...|......+... =...=..+.+-|.+.|.+..|.
T Consensus 124 ~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHH
Confidence 1111111111 01111111111111222211111110 0000023456788999999999
Q ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 018582 253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 308 (353)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 308 (353)
.-+++|++.-.. ..-....+-.+..+|...|-.++|.+.-+-+. .+. |+.
T Consensus 188 nR~~~v~e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~-p~s 237 (254)
T COG4105 188 NRFEEVLENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANY-PDS 237 (254)
T ss_pred HHHHHHHhcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcC-CCC
Confidence 999999998411 11124566777889999999999988766544 444 443
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.50 E-value=0.89 Score=35.45 Aligned_cols=226 Identities=18% Similarity=0.104 Sum_probs=161.3
Q ss_pred cCCcchHHHHHHHHHHCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHhcCCHHHH
Q 018582 34 TGHPEKIPAIIQEMKASSIM-PDSYTYNVWMRALAAVNDISGAERVIEEMKRD-GRVAADWTTFSNLASIYVEAGLFEKA 111 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 111 (353)
.+....+...+......... .....+......+...+++..+...+...... . .......+......+...++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL-LPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHHHhhHHHH
Confidence 35556666666666654311 12567777788888899999999988888752 2 456667777888888888999999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 112 ERALKELENRNAHRDLSAYQFLIT-LYGQTGNLSEVYRIWRSLRLAFP--NTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
...+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+...
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 115 LELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999987754443 222333333 78899999999999999855322 123334444455567788999999999998
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
...........+..+...+...+.++.+...+......... ....+..+...+...+..+.+...+.......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 87653324677888888899999999999999998875322 23445555555557778999999999988875
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.39 Score=44.16 Aligned_cols=174 Identities=11% Similarity=0.075 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV----WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 100 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (353)
..-+..+.+...++.|+.+-+ ..+. +..+... ...-+.+.|++++|...|-+-+.. ..|.. ++.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHH
Confidence 344555556666666655532 2332 3333333 334456778899888888766653 44443 566
Q ss_pred HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 018582 101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180 (353)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (353)
-|.....+.+-..+++.+.+.|.. +...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 667777777777888888887776 66667788888888888888776665433 2211 1123445566666666666
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
|.-+-.+... +......+ +-..+++++|++.+..
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 5554443322 22222222 2334556666655543
No 260
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=1.1 Score=36.07 Aligned_cols=145 Identities=15% Similarity=0.172 Sum_probs=81.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (353)
......|++.+|...|......... +...-..+..+|...|+.+.|..++..+..............-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455677777777777777666443 344555677777777777777777777554322222222222334444444444
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582 215 NAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD 288 (353)
Q Consensus 215 ~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (353)
+...+-.+.-. .| |...-..+...+...|+.+.|++.+-.+++.+.. .-|...-..++..+.-.|.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-----~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-----FEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-----ccCcHHHHHHHHHHHhcCC
Confidence 44444444333 23 4555556666777777777777776666665321 1244445555555555553
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.29 E-value=0.38 Score=38.78 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=49.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIRVTNVM 203 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 203 (353)
++..++..+...|+.+.+.+.++++....+ -+...|..++.+|.+.|+...|...|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 566666666666777777777776666654 3566666777777777777777666666543 5666666666555
Q ss_pred HHH
Q 018582 204 IGA 206 (353)
Q Consensus 204 i~~ 206 (353)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.28 E-value=1.3 Score=36.17 Aligned_cols=227 Identities=15% Similarity=0.090 Sum_probs=129.3
Q ss_pred HHhcCChhHHHHHHHHHHHcC-CCCCcHH------HHHHHHHHHHhcC-CHHHHHHHHHHHHHc--------cCCCC---
Q 018582 66 LAAVNDISGAERVIEEMKRDG-RVAADWT------TFSNLASIYVEAG-LFEKAERALKELENR--------NAHRD--- 126 (353)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~--- 126 (353)
..+.|+.+.|...+.+..... ...|+.. .|+. .....+.+ +++.|...+++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 357899999999999988743 1344432 2232 23334455 888888877765332 12233
Q ss_pred --HHHHHHHHHHHHccCCHH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH
Q 018582 127 --LSAYQFLITLYGQTGNLS---EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 201 (353)
Q Consensus 127 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (353)
..+...++.+|...+..+ +|..+++.+....+. ....+..-+..+.+.++.+.+.+++.+|...-.- ....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 346677888888888765 455566666555433 2455656777788889999999999999876421 233445
Q ss_pred HHHHHHHhc--CChHHHHHHHHHHHhcCCCCChh-hHHHH-H---HHHHccCC------hHHHHHHHHHHHHcCCCCCCC
Q 018582 202 VMIGAYAKE--GRLENAEELKERARRRGADPNAK-TWEIF-S---DYYLRNGD------MKLAVDCLEKAIDTGRGDGGK 268 (353)
Q Consensus 202 ~li~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~-~~~~l-i---~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~ 268 (353)
.++..+... .....+...+..+....+.|... ....+ + -...+.++ .+...+++....+....+
T Consensus 160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~--- 236 (278)
T PF08631_consen 160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ--- 236 (278)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC---
Confidence 555554221 23456777777766554555543 11111 1 11122222 444445555433332111
Q ss_pred CcccHHH---HHHHH----HHHHhcCChhhHHHHHHHHH
Q 018582 269 WVPSSET---IRTFM----RHFEQEKDVDGAEGFLEILK 300 (353)
Q Consensus 269 ~~~~~~~---~~~l~----~~~~~~~~~~~a~~~~~~~~ 300 (353)
.+..+ ..+++ ..+.+.++++.|.++|+-..
T Consensus 237 --ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 --LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 23333 22332 23567889999999988543
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.25 E-value=0.96 Score=37.58 Aligned_cols=229 Identities=15% Similarity=0.025 Sum_probs=129.4
Q ss_pred HhcCCcchHHHHHHHHHHC--CCCCCcchHHHHHHHHHhcCChhHHHHHHH----HHHHcCCCCCcHHHHHHHHHHHHhc
Q 018582 32 AKTGHPEKIPAIIQEMKAS--SIMPDSYTYNVWMRALAAVNDISGAERVIE----EMKRDGRVAADWTTFSNLASIYVEA 105 (353)
Q Consensus 32 ~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (353)
....+.++|+..|.+-..+ ...--..+|..+..+.+..|.+++++..-- -..+...-..-...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777665543 111123356667777778887777655322 1222110112233455566666666
Q ss_pred CCHHHHHHHHHHHHHc-cCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHhcC
Q 018582 106 GLFEKAERALKELENR-NAHR---DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-----PNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 106 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 176 (353)
-++.+++.+-..-... |..| ......++..++...+.++++++.|+...... ......+|..+...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6666666665543221 1111 11233446677777788889988888764421 1122347888888888889
Q ss_pred ChhHHHHHHHHHH----hcCCCCcHHHH-----HHHHHHHHhcCChHHHHHHHHHHHh----cCCCC-ChhhHHHHHHHH
Q 018582 177 DLPGAEKCFKEWE----SGCATYDIRVT-----NVMIGAYAKEGRLENAEELKERARR----RGADP-NAKTWEIFSDYY 242 (353)
Q Consensus 177 ~~~~a~~~~~~~~----~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~~~ 242 (353)
++++|.-+..+.. ..++.--..-| -.|.-++...|+.-.|.+.-++..+ .|-.| .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 9888776655543 22222111122 2344566777888777777766443 33222 223455667778
Q ss_pred HccCChHHHHHHHHHHHH
Q 018582 243 LRNGDMKLAVDCLEKAID 260 (353)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~ 260 (353)
...|+.+.|+.-|+....
T Consensus 257 R~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccHhHHHHHHHHHHH
Confidence 888998888877666443
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.19 E-value=0.59 Score=35.16 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
..+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.+|+...-.+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666677777777777777777655433322 23445556666666676666666665543
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=1.5 Score=36.12 Aligned_cols=152 Identities=14% Similarity=0.033 Sum_probs=88.7
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh--hHH--HHHHHHHHhcCChh
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISY--LNMIQVLVNLKDLP 179 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~--~~l~~~~~~~~~~~ 179 (353)
..|++.+|-..++++.+.-| .|..++...=.+|.-.|+.+.-...++++... ..+|. .+| ....-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45666666666777766433 36667776777777777777777777766543 11222 222 22233445677777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChHHHHHHHH
Q 018582 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMKLAVDCLE 256 (353)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 256 (353)
+|++.-++..+.+ +.|.....+....+-..|++.++.++..+-...- --.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777777776665 3366666666677777777777777665533210 00011223333334455577777777776
Q ss_pred HH
Q 018582 257 KA 258 (353)
Q Consensus 257 ~~ 258 (353)
+-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=1.4 Score=35.55 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=105.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 247 (353)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 247 (353)
-.......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344567789999999999998877644 5667778999999999999999999997654222222222233455555555
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHh--cCCCCChhhhHHHHHHHHHcCC
Q 018582 248 MKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKK--AVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
..+..++-++.-.. | |...-..+...+...|+.+.|...+-.+.+ .+. .|...-..|+..+.-.|.
T Consensus 219 ~~~~~~l~~~~aad---------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 219 TPEIQDLQRRLAAD---------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 55555555555544 5 677778888899999999999987766655 344 677788889998888885
No 267
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.04 E-value=0.77 Score=32.12 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=80.1
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 018582 138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE 217 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (353)
.-.|..++..++..+..... +..-++.+|--....-+-+-..++++.+-+. .|. ..+|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 34677777777777766542 3445566665555555555555555554332 121 1233333333
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHH
Q 018582 218 ELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 297 (353)
Q Consensus 218 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (353)
..+-.+- .+.......+..+...|.-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.++++
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-------~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-------EINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-------CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3332211 134556667788888888888889998887643 3788888899999999999999999999
Q ss_pred HHHhcCC
Q 018582 298 ILKKAVD 304 (353)
Q Consensus 298 ~~~~~~~ 304 (353)
+.-+.|.
T Consensus 145 ~ACekG~ 151 (161)
T PF09205_consen 145 EACEKGL 151 (161)
T ss_dssp HHHHTT-
T ss_pred HHHHhch
Confidence 9888877
No 268
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.03 E-value=2.2 Score=37.32 Aligned_cols=182 Identities=10% Similarity=0.045 Sum_probs=128.6
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 98 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 98 (353)
.|....-+++..++.+..++-+..+..+|...| -+...|..++.+|... ..+.-..+++++.+. .-.|...-..|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHH
Confidence 456667788888888888888999999999865 6788899999999888 667788889988885 33344444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCChhHHHHHHHHH
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRD-----LSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVL 172 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 172 (353)
...|-+ ++.+.+...|.++..+-++.. ...|..+...- ..+.+..+.+...+... |...-...+.-+-..|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 888888888888766543311 22455554321 35667777777766544 4444556677777888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 018582 173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 209 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 209 (353)
....++++|.+++..+.+.+- .|...-..++..+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDE-KDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHHHH
Confidence 999999999999998887763 366666666665543
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.97 E-value=0.72 Score=34.69 Aligned_cols=63 Identities=25% Similarity=0.293 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018582 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISYLNMIQVLVNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 190 (353)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+..++....-.+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677778888888888888888888776443332 3456677777778888887777777553
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.88 E-value=3 Score=38.03 Aligned_cols=182 Identities=17% Similarity=0.033 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH-------ccCCCCHHHHHHHHHHHHccC--
Q 018582 72 ISGAERVIEEMKRDGRVAADWTTFSNLASI-YVEAGLFEKAERALKELEN-------RNAHRDLSAYQFLITLYGQTG-- 141 (353)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 141 (353)
...|.++++...+.|...+-...-.....+ +....+.+.|+..|+.... .+ ...+..-+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 467888999888877333322222233333 5567899999999998866 44 3335666777777643
Q ss_pred ---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCh
Q 018582 142 ---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRL 213 (353)
Q Consensus 142 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 213 (353)
+.+.|+.++....+.|. |+...+...+.-... ..+...|.++|....+.|.. .... .+..+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~--~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIY--RLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHH--HHHHHHHhCCCcCCCH
Confidence 66779999998887765 444433222222222 24577899999999988843 3322 23333322 2478
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+.|..++.+.-+.| .|...--...+..+.. +++..+.-.+..+...|
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 89999999998887 3332222233333444 67777666666666655
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.82 E-value=2 Score=35.81 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=136.3
Q ss_pred hcCChhHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHH-H---HHcc-CCCCHHHHHHHHHHHHccC
Q 018582 68 AVNDISGAERVIEEMKRDGR-VAADWTTFSNLASIYVEAGLFEKAERALKE-L---ENRN-AHRDLSAYQFLITLYGQTG 141 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~---~~~~-~~~~~~~~~~l~~~~~~~~ 141 (353)
.+.+.+.|+..+.+....-. ...-..++..+..+.++.|.+++++..--. | .+.. -..-..+|..+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544210 111233556677788888888877643221 1 1100 0011335666666666666
Q ss_pred CHHHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHhcCC
Q 018582 142 NLSEVYRIWRSLRLA-FPNT---ANISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIRVTNVMIGAYAKEGR 212 (353)
Q Consensus 142 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~ 212 (353)
++.+++.+-..-... |..| ......++..+....+.++++++.|+...+ .+......++..|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655543322 2222 113345577788888899999999988653 2233456788999999999999
Q ss_pred hHHHHHHHHHHHh----cCCCCChhhH-----HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582 213 LENAEELKERARR----RGADPNAKTW-----EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283 (353)
Q Consensus 213 ~~~a~~~~~~~~~----~~~~p~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (353)
+++|.-+.....+ .++..-..-| -.|.-++...|..-.|.+.-++..+..+..+. -.........+.+.|
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd-ra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD-RALQARCLLCFADIY 256 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHH
Confidence 9998876655432 2332222223 23445667778888888777776554211000 002244566777788
Q ss_pred HhcCChhhHHHHHHHH
Q 018582 284 EQEKDVDGAEGFLEIL 299 (353)
Q Consensus 284 ~~~~~~~~a~~~~~~~ 299 (353)
...|+.+.|..-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 8999999988777654
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.82 E-value=1.6 Score=34.56 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=114.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 133 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 133 (353)
-...|+.-+ .-.+.|++++|.+.|+.+..+-.. +-...+.-.++-++-+.++++.|+..+++....-+......|-.-
T Consensus 34 ~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 334455544 456889999999999999986322 222445556778888999999999999998776655444566666
Q ss_pred HHHHHc-------cCCHHHHHHHHHH---HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 018582 134 ITLYGQ-------TGNLSEVYRIWRS---LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 203 (353)
Q Consensus 134 ~~~~~~-------~~~~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 203 (353)
|.+++. ..+...+.+.+.. +.+.- ||+. =...|..-+..+... =...=..+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSR-------------YAPDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCc-------------chhhHHHHHHHHHHH----HHHHHHHH
Confidence 666553 2233333333333 33332 2221 112222222222111 00111356
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 204 IGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+.|.+.|.+..|..-+++|.+. ..-+. ..+-.+..+|...|-.++|.+.-+-+...-
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 78899999999999999998876 22222 345566778888888888877766555543
No 273
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.77 E-value=0.00089 Score=48.55 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=39.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 247 (353)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 247 (353)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34444455555555555555554443444555556666666655555555554410 11222334444555555
Q ss_pred hHHHHHHHHH
Q 018582 248 MKLAVDCLEK 257 (353)
Q Consensus 248 ~~~a~~~~~~ 257 (353)
++.|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.75 E-value=1.9 Score=41.59 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCC--------------HHHHHHH--
Q 018582 72 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRD--------------LSAYQFL-- 133 (353)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l-- 133 (353)
++...+..+....+ ..|+ .....++.+|.+.+ .++.|+....++......++ ...|+.-
T Consensus 773 v~~vc~~vr~~l~~--~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALg 849 (1265)
T KOG1920|consen 773 VNSVCDAVRNALER--RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALG 849 (1265)
T ss_pred HHHHHHHHHHHHhh--cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhc
Confidence 33444455554444 5666 44557888888887 67777777777664211111 1112221
Q ss_pred --------HHHHHccCCHHHHHHHHHHHHHh-----CCCCChh--HHHHHHHHHHhcC--ChhHHHHHHHH------HHh
Q 018582 134 --------ITLYGQTGNLSEVYRIWRSLRLA-----FPNTANI--SYLNMIQVLVNLK--DLPGAEKCFKE------WES 190 (353)
Q Consensus 134 --------~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~--~~~~l~~~~~~~~--~~~~a~~~~~~------~~~ 190 (353)
+-+-..+.|+.+-+-++++++.. ....|.+ -|...+..+...| -++++..+.++ ...
T Consensus 850 tYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ 929 (1265)
T KOG1920|consen 850 TYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALA 929 (1265)
T ss_pred ccchHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhh
Confidence 12223344555555555554421 1111111 2333334444444 34444443332 111
Q ss_pred cCCCCcHHHHHHHHHHH----HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 018582 191 GCATYDIRVTNVMIGAY----AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG 266 (353)
Q Consensus 191 ~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (353)
. ..|+...+..+..+| ...+.+++|.-+|+..-+. .-.+.+|..+|+|.+|+.+...+...
T Consensus 930 l-y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~----- 994 (1265)
T KOG1920|consen 930 L-YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG----- 994 (1265)
T ss_pred e-eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC-----
Confidence 1 234444444333333 3445666666555543221 12456667777777777776654332
Q ss_pred CCCcccH--HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHH
Q 018582 267 GKWVPSS--ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRR 331 (353)
Q Consensus 267 ~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 331 (353)
-+. .+-..|+.-+...+++-+|-++..+... . ....+..|++...|.+|+...
T Consensus 995 ----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d----~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 995 ----KDELVILAEELVSRLVEQRKHYEAAKILLEYLS----D----PEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred ----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----C----HHHHHHHHhhHhHHHHHHHHH
Confidence 121 2235677778888888888888776543 1 233445555555566666533
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.74 E-value=0.57 Score=37.81 Aligned_cols=80 Identities=21% Similarity=0.208 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----hCCCCChhHHH
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISYL 166 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 166 (353)
..++..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677888888999999999999999887655 778899999999999999999999888755 47888887776
Q ss_pred HHHHHH
Q 018582 167 NMIQVL 172 (353)
Q Consensus 167 ~l~~~~ 172 (353)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.71 E-value=1.1 Score=32.08 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=39.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582 65 ALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139 (353)
Q Consensus 65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (353)
...+.|++++|.+.|+.+..+ .+.. ..+--.|+.+|.+.++++.|...+++.++..+...-..|-..+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344556666666666666654 2222 223344666666666666666666666655444333444444444443
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.53 E-value=1.4 Score=32.61 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=13.6
Q ss_pred HHHCCCCCCcchHHHHHHHHHhcCChh
Q 018582 47 MKASSIMPDSYTYNVWMRALAAVNDIS 73 (353)
Q Consensus 47 m~~~~~~p~~~~~~~ll~~~~~~~~~~ 73 (353)
+.+.+++|+...+..+++.+.+.|++.
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 334445555555555555555555443
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=2.6 Score=39.18 Aligned_cols=214 Identities=12% Similarity=0.094 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHH----CC------------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKA----SS------------IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 85 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 85 (353)
...+.++.+|...+++-.-.-++..... .+ ..........-+..+.+...++-|..+-+. .
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~ 360 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS---Q 360 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh---c
Confidence 3456677777777765544444433322 12 011223456677777787888888777543 2
Q ss_pred CCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582 86 GRVAADW--TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 163 (353)
Q Consensus 86 ~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (353)
+ ..++. .......+.+.+.|++++|...+-+-... ++|. .+|.-|....+......+++.+.+.|.. +..
T Consensus 361 ~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 361 H-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred C-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence 2 23332 23344455667889999999887765432 2222 3566677777888888899999999884 566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 243 (353)
.-+.|+.+|.+.++.++..++.+...+.....| ....+..+.+.+-.++|..+-..... +......+ +-
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LE 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HH
Confidence 667899999999999998888776542211112 34566777777777777766554332 22222222 23
Q ss_pred ccCChHHHHHHHHH
Q 018582 244 RNGDMKLAVDCLEK 257 (353)
Q Consensus 244 ~~~~~~~a~~~~~~ 257 (353)
..+++++|++++..
T Consensus 502 ~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 502 DLHNYEEALRYISS 515 (933)
T ss_pred HhcCHHHHHHHHhc
Confidence 34566666655543
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.14 E-value=0.15 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=12.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRS 152 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~ 152 (353)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.03 E-value=0.091 Score=26.98 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=12.9
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAE 112 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~ 112 (353)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555555555555555555553
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.01 E-value=3.4 Score=35.07 Aligned_cols=124 Identities=7% Similarity=-0.003 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC-----
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG----- 267 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 267 (353)
...+|..++..+.+.|+++.|...+.++...+..+ ++.....-+..+-..|+..+|+..++...........
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44556666666666666666666666665432111 2223333344445556666666666665552111000
Q ss_pred ---------------CC-------cccHHHHHHHHHHHHhc------CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 268 ---------------KW-------VPSSETIRTFMRHFEQE------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 268 ---------------~~-------~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
.. ..-...+..+..-.... +..+++.+.|+...+..+ .....|..+...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP-SWEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHH
Confidence 00 00012222222223333 677788888888887776 55566666666654
Q ss_pred H
Q 018582 320 A 320 (353)
Q Consensus 320 ~ 320 (353)
+
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 4
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.99 E-value=0.54 Score=30.73 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
++.+-++.+....+.|++....+.+++|-+.+|+..|.++|+-++.. ...+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 34455555555566777777777777777777777777777766643 222344454443
No 283
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.98 E-value=2.6 Score=33.64 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERAR 224 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (353)
.|..=|+.|....+-.....+|++..
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34444445555555445555555433
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.92 E-value=0.16 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=18.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 018582 234 TWEIFSDYYLRNGDMKLAVDCLEKAI 259 (353)
Q Consensus 234 ~~~~li~~~~~~~~~~~a~~~~~~~~ 259 (353)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888888744
No 285
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.65 E-value=2.2 Score=32.45 Aligned_cols=89 Identities=13% Similarity=0.136 Sum_probs=50.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHH
Q 018582 207 YAKEGRLENAEELKERARRRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM 280 (353)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 280 (353)
+.+.|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|++--.+.++.+ |+ ...+..-.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~kAl~RRA 175 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYEKALERRA 175 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhHHHHHHHH
Confidence 345566666666666665541 111 1223333345556666666666666666665 43 33344445
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCC
Q 018582 281 RHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.+|.+...++.|+.-|+.+.+.+|
T Consensus 176 eayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCc
Confidence 566666667777777777766665
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.53 E-value=0.13 Score=26.34 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.3
Q ss_pred HHHHHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582 296 LEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 327 (353)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 327 (353)
+++.++.+| .++.+|+.|...|...|+..++
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhh
Confidence 566777787 8888888888888888886554
No 287
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.52 E-value=0.68 Score=30.27 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 317 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (353)
|.-++.+-++.+.... ..|++.+..+-+++|.+.+++..|.++++-++.... .+...|..++.-
T Consensus 22 D~we~rr~mN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYD------LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHHH
Confidence 3345566667777666 669999999999999999999999999998875443 345567666543
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.34 E-value=2.3 Score=31.05 Aligned_cols=51 Identities=22% Similarity=0.094 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
+.++.+++..++..+.-..+. ....-..-...+...|+|.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555432221 111111112234445555555555555433
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.32 E-value=8.6 Score=37.55 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=77.7
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582 137 YGQTGNLSEVYRIWRSLRLAFPNTANIS----YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 212 (353)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (353)
-.+.|.+.+|+.++ .|+... |.+..+.+.....+++|--.|...-+. ..-+.+|..+|+
T Consensus 918 I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~d 980 (1265)
T KOG1920|consen 918 IKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGD 980 (1265)
T ss_pred HHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhcc
Confidence 33444555554443 345544 444455566677888887777664321 234677888888
Q ss_pred hHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChh
Q 018582 213 LENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD 290 (353)
Q Consensus 213 ~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 290 (353)
+.+|..+..++... -+. .+-..|+..+...+++-+|-++..+.... |. ..+..+++...|+
T Consensus 981 Wr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~-----~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 981 WREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PE-----EAVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HH-----HHHHHHhhHhHHH
Confidence 88888888876532 122 22256778888888888888888776654 21 1223344555667
Q ss_pred hHHHHHHH
Q 018582 291 GAEGFLEI 298 (353)
Q Consensus 291 ~a~~~~~~ 298 (353)
+|.++...
T Consensus 1044 eAlrva~~ 1051 (1265)
T KOG1920|consen 1044 EALRVASK 1051 (1265)
T ss_pred HHHHHHHh
Confidence 77665544
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.26 E-value=1.6 Score=28.94 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 269 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
+.|++.+..+.+++|.+.+++..|.++++.++..-. +....|..+++
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 446666666666666666666666666666555333 22335555443
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.21 E-value=0.29 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+|..+...|...|++++|++.|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356667777777777777777777777654
No 292
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.08 E-value=4 Score=33.06 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChhHH
Q 018582 106 GLFEKAERALKELEN-RNAHRDLSAYQFLITLYGQ-TG-NLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVNLKDLPGA 181 (353)
Q Consensus 106 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 181 (353)
..+.+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+... +..++..+...++..++..+++.+.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345667777774322 2344577777777777766 22 222233333333332 3556777888899999999999999
Q ss_pred HHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 182 EKCFKEWESG-CATYDIRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
.+++...... ++..|.+.|..+|......|+..-...+.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 9998887755 5667888999999999999998877777665
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.00 E-value=2.8 Score=31.04 Aligned_cols=134 Identities=12% Similarity=0.030 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh-HHH--H
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SYL--N 167 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~ 167 (353)
...|...++ +.+.+..++|+.-|..+.+.|...= +.............|+...|...|+++-.....|-.. -.. -
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444443 3456778888888888877665411 1122223344567788888888888876654444332 111 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
-.-.+...|.++....-.+-+...+-+.-...-..|.-+-.+.|++..|...|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 12234567777777666666554443333344455666666778888888888877654
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.87 E-value=0.35 Score=24.52 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.+|..+..++...|++++|...|++.++.+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688889999999999999999999998775
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.76 E-value=2.9 Score=30.58 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=8.2
Q ss_pred ccCCHHHHHHHHHHHHH
Q 018582 139 QTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~ 155 (353)
+.++.+++..++..+.-
T Consensus 22 ~~~~~~D~e~lL~ALrv 38 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV 38 (160)
T ss_pred ccCChHHHHHHHHHHHH
Confidence 34455555555554443
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.69 E-value=0.44 Score=24.03 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
..+..+...+...|++++|.+.+++..+..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4577788899999999999999999988776
No 297
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=8.6 Score=35.53 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 312 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (353)
.+.+--+.-+...|+..+|.++-.+.. .||...|..-+.+++..++|++-+++-+.. ..+.-|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----------ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~ 748 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----------IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYL 748 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----------CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCch
Confidence 444455555566666666665554432 156666666666666666666655554432 1244455
Q ss_pred HHHHHHHHcCCChHH
Q 018582 313 PLIRTYAAAGRTSPV 327 (353)
Q Consensus 313 ~l~~~~~~~g~~~~~ 327 (353)
-.+.+|.+.|+..++
T Consensus 749 PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEA 763 (829)
T ss_pred hHHHHHHhcccHHHH
Confidence 566666666664443
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=2.3 Score=34.75 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC---ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 237 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 237 (353)
...+...++..-....+++.+...+-++.... ..++... .+.++.+.+ =+.++++.++..=.+.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 34444555555555566666666666655321 1111111 122232222 345567776666667777777777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC
Q 018582 238 FSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+++.+.+.+++..|..+...|+...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777766666553
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.42 E-value=0.97 Score=34.32 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=61.0
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCcHHHHHHHHHHHHhcC
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG--RVAADWTTFSNLASIYVEAG 106 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 106 (353)
-...+.|+ +.|+..|-.+...+.--+ ......+..|-...|.+++..++.+..+.. ...+|+.++.+|++.+.+.|
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 34566665 679999988887764434 444444445556789999999998887632 13788999999999999999
Q ss_pred CHHHHH
Q 018582 107 LFEKAE 112 (353)
Q Consensus 107 ~~~~a~ 112 (353)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999885
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.31 E-value=0.095 Score=37.88 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5566666667777777777776655555566677777777777666666666551 111223345555555555
Q ss_pred hhHHHHHHHH
Q 018582 178 LPGAEKCFKE 187 (353)
Q Consensus 178 ~~~a~~~~~~ 187 (353)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=4.3 Score=33.24 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=75.7
Q ss_pred CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 018582 50 SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR--VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 127 (353)
Q Consensus 50 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 127 (353)
.|.+.+..+...++....+..+++.+...+-+++.... ..|+... ...++.+. .-+.++++.++..=++.|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 35566667777777777777888888888877765320 1222222 22344433 34677888888888889999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
.+++.+|+.+.+.+++.+|..+...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999888776554
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.17 E-value=4.4 Score=31.32 Aligned_cols=179 Identities=18% Similarity=0.123 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRI 149 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (353)
|-+..|.-=|.+.... .|.-..+||.|.-.+...|+++.|.+.|+...+..+.-+-...|.-|. +.-.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence 4444455555555553 234467889999999999999999999999988665544333333333 3346888888887
Q ss_pred HHHHHHhCCCCChhHHHHHHHHH-HhcCChhHHHHHHHH-HHhcCCCCcHHHHHH-HHHHHHhcCChHHHHHHHHHHHhc
Q 018582 150 WRSLRLAFPNTANISYLNMIQVL-VNLKDLPGAEKCFKE-WESGCATYDIRVTNV-MIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
+.+.-+..+. |+ |.++--.. -..-++.+|..-+.+ ..+. |..-|.. ++..|...=..+. +++++...
T Consensus 156 ~~~fYQ~D~~-DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPN-DP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKAD 225 (297)
T ss_pred HHHHHhcCCC-Ch--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhh
Confidence 7776665442 22 22221111 223345555544433 3322 3233332 3334432222222 23333221
Q ss_pred CCCC-------ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 227 GADP-------NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 227 ~~~p-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
-.. =+.||--+..-+...|+.++|..+|+-.+..+
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 111 13577788888899999999999999988876
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.03 E-value=0.52 Score=23.76 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=19.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.|..+...+...|++++|++.|++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666777777777777777776654
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.02 E-value=8.2 Score=34.06 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205 (353)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (353)
|....-+++..+..+.++.-+..+-.+|..-|- +...|..++++|... ..+.-..+|+++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 444455566666666666666666666666542 455666666666666 455566666666665544 4444444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582 206 AYAKEGRLENAEELKERARRRGADPN------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279 (353)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (353)
.|-+ ++.+.+...|......- .|. -..|.-+...- ..+.+..+.+..++....- ...-...+..+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~qdv 211 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQDV 211 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHHHH
Confidence 4444 56666666666655431 110 12233332211 2345555555555544410 11223344444
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
-.-|....++++|.+++..+.+.+. .|..+-..++.-+.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~lR 250 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIENLR 250 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHHH
Confidence 4556666777777777777766665 55555555554443
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.92 E-value=2.5 Score=28.04 Aligned_cols=60 Identities=5% Similarity=0.045 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
+..+-++.+......|++.+..+.+++|.+.+++..|.++|+.++.+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666667777777777777777777777777777777654 2222235555443
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.91 E-value=3.3 Score=35.99 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=76.9
Q ss_pred hcCChhHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582 174 NLKDLPGAEKCFKE-WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 252 (353)
Q Consensus 174 ~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 252 (353)
..|+.-.|.+-+.. +....-.|+.... ....+...|.++.+.+.+...... +.....+...+++.....|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555555443333 3333333443333 333456778888888888776543 3345667778888888888888888
Q ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
..-..|+...+ .++.+...-.......|-++++.-.|+++...++
T Consensus 378 s~a~~~l~~ei-------e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 378 STAEMMLSNEI-------EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhcccc-------CChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 88888887764 3444444444445556778888888888877766
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.86 E-value=2.6 Score=32.07 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582 213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 292 (353)
Q Consensus 213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 292 (353)
-++|.+.|-.+...+.--++.....+...|. ..+.+++..++.+.++...+. -.+|+..+.+|+..+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~---~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD---DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHhcchhhh
Confidence 3567777777776654444444444444444 567788888888777763221 136778888888888888887776
Q ss_pred H
Q 018582 293 E 293 (353)
Q Consensus 293 ~ 293 (353)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.84 E-value=4.1 Score=30.20 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=75.3
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582 112 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG 191 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (353)
.+.++.+...++.|+...+..+++.+.+.|.+..... +...++-+|.......+-.+. +....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556666777777777777777777777655443 334445555554443332222 2333444444444432
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 192 CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
- . ..+..+++.+...|++-+|.++.+..... +......++++-.+.+|...-..+++-..+.
T Consensus 88 L-~---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L-G---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h-h---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 0 13455677777888888888877764322 2233345566666666655555555544443
No 309
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.74 E-value=8.2 Score=33.49 Aligned_cols=263 Identities=12% Similarity=0.053 Sum_probs=119.7
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCcch------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH--HH
Q 018582 32 AKTGHPEKIPAIIQEMKASSIMPDSYT------YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI--YV 103 (353)
Q Consensus 32 ~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 103 (353)
-+++++.+|.++|.+..+.. ..++.. -+.++++|.. ++++.....+....+.. |+. .|-.|..+ +-
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~~s-~~l~LF~~L~~Y 90 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---GKS-AYLPLFKALVAY 90 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---CCc-hHHHHHHHHHHH
Confidence 34666777777776665531 122121 2334444433 44555555555555532 211 22222222 23
Q ss_pred hcCCHHHHHHHHHHHHHc--cCCC------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC----CChhHH
Q 018582 104 EAGLFEKAERALKELENR--NAHR------------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN----TANISY 165 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 165 (353)
+.+++++|.+.+..-... +..+ |...=+..++.+...|++.++..+++++...-.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 556666666666554332 1111 1122234455666677777777777666544322 455566
Q ss_pred HHHHHHHHhc--------CC-------hhHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 018582 166 LNMIQVLVNL--------KD-------LPGAEKCFKEWESG------CATYDIRVTNVMIGAYAKE--GRLENAEELKER 222 (353)
Q Consensus 166 ~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~ 222 (353)
+.++-.+.++ .. ++.+.-..++|... .+-|.......+++...-. .+..--.+++..
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 6544333332 01 11111112222211 1233333334444333221 122222333333
Q ss_pred HHhcCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 223 ARRRGADPNAK-TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 223 ~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
....-+.|+.. ....++..+.. +.+++..+-+.+....+.+- ..--..++..++....+.++...|.+.+.-+.-
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~L--ke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKL--KEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333444432 23333444433 44555555444443321100 001245677777778888888888888877766
Q ss_pred cCC
Q 018582 302 AVD 304 (353)
Q Consensus 302 ~~~ 304 (353)
.+|
T Consensus 327 ldp 329 (549)
T PF07079_consen 327 LDP 329 (549)
T ss_pred cCC
Confidence 655
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.07 E-value=10 Score=33.34 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=136.7
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHhcC------ChhHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCCHHH-H
Q 018582 40 IPAIIQEMKASSIMPDSYTYNVWMRALAAVN------DISGAERVIEEMKRDGRVAAD-WTTFSNLASIYVEAGLFEK-A 111 (353)
Q Consensus 40 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-a 111 (353)
...+|+...+ .-|+...|+..|..|...- .+.....+++.....+...++ ...|..+.-.++....... |
T Consensus 301 ~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 3456665554 2356666777777665432 344556666666654433333 3455556555555544332 3
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHcc-CCHHHH-HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hhH--HHHHHH
Q 018582 112 ERALKELENRNAHRDLSAYQFLITLYGQT-GNLSEV-YRIWRSLRLAFPNTANISYLNMIQVLVNLKD-LPG--AEKCFK 186 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--a~~~~~ 186 (353)
..+. ..++.-+...|..-+....+. .+++-. .+++..++..-..+-...|+... .++ .+. -..++.
T Consensus 379 ~~l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 379 VKLT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred HHhh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 3333 223344565665555554432 122222 22233333322222223333333 122 111 112223
Q ss_pred HHHhcCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH--ccCChHHHHHHHHHHHHc-C
Q 018582 187 EWESGCATYDIRV-TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL--RNGDMKLAVDCLEKAIDT-G 262 (353)
Q Consensus 187 ~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~-~ 262 (353)
...+.+ .++..+ -+.+++.+.+.|-.++|..++..+... ++|+...|.-+|+.-. ..-+..-+.++++.|... |
T Consensus 450 a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 333332 334333 367788888999999999999999887 5677888888876432 223477888999998887 5
Q ss_pred CCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 263 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.++..|...+.--...|..+.+-.++.++.+
T Consensus 528 --------~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 --------ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred --------CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6788888888777789999988887766544
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.05 E-value=3.1 Score=32.12 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCChhhHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR--GADPNAKTWEIFSDY 241 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~ 241 (353)
|....++.+.+.+...+++...++-++..+. |...-..+++.+|-.|++++|..-++-.-+. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455667778888899998888887776644 6667777888999999999998777765543 123344566666654
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.84 E-value=15 Score=34.83 Aligned_cols=230 Identities=14% Similarity=0.075 Sum_probs=118.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCc----HH---HHHHHH-HHHHhcCCHHHHHHHHHHHHHcc----CCCCHHHHHHH
Q 018582 66 LAAVNDISGAERVIEEMKRDGRVAAD----WT---TFSNLA-SIYVEAGLFEKAERALKELENRN----AHRDLSAYQFL 133 (353)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 133 (353)
.....++.+|..+..++...- -.|+ .. .++.|- ......|+++.|.++-+.....- ..+....+..+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445678888888888776642 1111 11 222221 22345678888888777664422 22445666777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHH-----HHHHhcCC--hhHHHHHHHHHHhc-----C-CCCcHHHH
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI-----QVLVNLKD--LPGAEKCFKEWESG-----C-ATYDIRVT 200 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~-----~-~~~~~~~~ 200 (353)
..+..-.|++++|..+..+..+..-.-+...+.... ..+...|+ ..+....+...... . ..+-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777778888888888877765542223333332222 23445552 22233333332211 1 01223444
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHH
Q 018582 201 NVMIGAYAKE-GRLENAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 277 (353)
Q Consensus 201 ~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
..+..++.+. +...++..-+.-.......|-..... .|+......|+.++|...+.++......+. ..++...-.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~--~~~~~~a~~ 661 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ--YHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC--CCchHHHHH
Confidence 5555555542 12222333333322232233223333 677788889999999999999887753321 122322222
Q ss_pred HHHH--HHHhcCChhhHHHHHHH
Q 018582 278 TFMR--HFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 278 ~l~~--~~~~~~~~~~a~~~~~~ 298 (353)
..+. .....|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 33456777777666554
No 313
>PRK09687 putative lyase; Provisional
Probab=90.82 E-value=8 Score=31.69 Aligned_cols=218 Identities=13% Similarity=0.001 Sum_probs=94.4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHccCCCCHHH
Q 018582 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF----EKAERALKELENRNAHRDLSA 129 (353)
Q Consensus 54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 129 (353)
+|.......+.++...|.. .+...+..+.. .+|...-...+.++.+.|+. +++...+..+... .++...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4555555566666655542 23333333333 23444444556666666653 3455555554222 234444
Q ss_pred HHHHHHHHHccCCH-----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 018582 130 YQFLITLYGQTGNL-----SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 204 (353)
Q Consensus 130 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 204 (353)
-...+.++...+.. ..+...+.... ..++..+-...+.++.+.++ +.+...+-.+.+. +|..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44444444443321 12222222221 12233444445555555544 2344444444332 1223333333
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582 205 GAYAKEG-RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283 (353)
Q Consensus 205 ~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (353)
.++.+.+ ..+.+...+..+.. .++..+-...+.++.+.++ ..|+..+-+..+.+ + .....+.++
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---------~--~~~~a~~AL 245 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---------T--VGDLIIEAA 245 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---------c--hHHHHHHHH
Confidence 4444332 12344444444442 2344455555555555555 34444444444432 1 122344555
Q ss_pred HhcCChhhHHHHHHHHHh
Q 018582 284 EQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~ 301 (353)
...|+. +|...+..+.+
T Consensus 246 g~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HhcCCH-hHHHHHHHHHh
Confidence 555553 45555555444
No 314
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.72 E-value=7.9 Score=31.45 Aligned_cols=138 Identities=9% Similarity=0.141 Sum_probs=94.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-cCC-HHHHHHHHHHHH-HccCCCCHHHHHHHHHHHHccCCHHHH
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE-AGL-FEKAERALKELE-NRNAHRDLSAYQFLITLYGQTGNLSEV 146 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 146 (353)
..+.+|+++|+.....+.+--|..+...+++.... .+. ...-.++.+-+. ..+..++..+...++..++..++|.+.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34566777777332212266677787888887776 322 223334444443 233557788889999999999999999
Q ss_pred HHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChhHHHHHHHH-----HHhcCCCCcHHHHHHHHHHH
Q 018582 147 YRIWRSLRLA-FPNTANISYLNMIQVLVNLKDLPGAEKCFKE-----WESGCATYDIRVTNVMIGAY 207 (353)
Q Consensus 147 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~ 207 (353)
.++++..... ++..|...|...|......|+..-..++.++ +...++..+...-..+-+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 9999987655 6667888999999999999998888777766 33455555555544444443
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.53 E-value=1.1 Score=36.93 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=49.5
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (353)
..|.+.|.+++|+++|.+.+... | ++.++..-..+|.+...+..|+.-....+..+- ..+.+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~Y~KAY 168 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------LYVKAY 168 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------HHHHHH
Confidence 45778899999999998887765 6 777787888888888888888777766665443 344555
Q ss_pred HHcCC
Q 018582 319 AAAGR 323 (353)
Q Consensus 319 ~~~g~ 323 (353)
++.+.
T Consensus 169 SRR~~ 173 (536)
T KOG4648|consen 169 SRRMQ 173 (536)
T ss_pred HHHHH
Confidence 55444
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.46 E-value=6.3 Score=29.90 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=47.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChhhHH-----HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582 205 GAYAKEGRLENAEELKERARRRGADPNAKTWE-----IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (353)
..+...|++++|..-++..... |....+. .|.+.....|.+++|+..++.....+ ........-
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--------w~~~~~elr 165 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--------WAAIVAELR 165 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--------HHHHHHHHh
Confidence 4455566666666666655532 1222222 23344556666666666666655443 233333344
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcC
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
.+.+...|+-++|+.-|+...+.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 455666666677766666666654
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.33 E-value=0.93 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=14.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555666666666666555543
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.21 E-value=1.1 Score=23.86 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888999999999999998888754
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=9.6 Score=34.37 Aligned_cols=148 Identities=16% Similarity=0.029 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (353)
.|+++.|..++..+. ....+.++..+.+.|-.++|+++- +|... -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 455555554443321 223445555566666666665431 22211 12223455666666665
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 018582 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 264 (353)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (353)
..+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~- 723 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK- 723 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-
Confidence 55422 445566677777777777777766665432 33455555555665555555555555541
Q ss_pred CCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 265 DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
. |.-.-+|...|+++++.+++..
T Consensus 724 ------~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ------N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ------c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 1 2222344556666666666543
No 320
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.00 E-value=7.6 Score=30.11 Aligned_cols=205 Identities=13% Similarity=0.050 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 018582 106 GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 185 (353)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 185 (353)
|-+.-|.-=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+-.+.- ..+...-.-++.-.|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHH
Confidence 3333344344443332222 35689999888999999999999999987765532 222222222334568888888777
Q ss_pred HHHHhcCCC-CcHHHHHHHHHHHHhcCChHHHHHHH-HHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582 186 KEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELK-ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 263 (353)
...-+.++. |-...|--++. ..-++.+|..-+ ++.... |..-|...|-.|.-..-- ...+++++.....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKIS--EETLMERLKADAT 227 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhcc--HHHHHHHHHhhcc
Confidence 766655432 22222322221 223555665443 333332 445555544443221111 1223333333210
Q ss_pred CCCCCC-cccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 264 GDGGKW-VPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 264 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
. .... ..-..||-.+..-+...|+.++|..+|+-....++ -+-+-+.--+--+.+.++
T Consensus 228 ~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV-ynfVE~RyA~~EL~~l~q 286 (297)
T COG4785 228 D-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV-YNFVEHRYALLELSLLGQ 286 (297)
T ss_pred c-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcc
Confidence 0 0000 01245677788888999999999999998887666 444444443333444444
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.81 E-value=15 Score=33.12 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=63.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHccCChHHHH---HHHHHHHHcCCCCCCCCcccHHHHHHH----HH
Q 018582 210 EGRLENAEELKERARRRGADPNAKT-WEIFSDYYLRNGDMKLAV---DCLEKAIDTGRGDGGKWVPSSETIRTF----MR 281 (353)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~p~~~~-~~~li~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~ 281 (353)
.|++..|..+++.+.+.- |+..- -..-+....+.|..+.+. +++....... -+..+...+ .+
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--------~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--------ENNGILEKLYVKFAR 448 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--------cCcchhHHHHHHHHH
Confidence 467888888888877652 44322 112233345566666666 3332222211 222222222 22
Q ss_pred -HHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 282 -HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 282 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
.+.-.++.+.|..++.++.+..+ ++...|..+++.....+.
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCCc
Confidence 23447889999999999999988 999999999998877774
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.76 E-value=11 Score=31.83 Aligned_cols=66 Identities=11% Similarity=-0.029 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY---DIRVTNVMIGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (353)
....+|..+...+.+.|+++.|...+..+...+... .+.+...-+...-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344577888888889999999998888887644221 334444556667778888888888877766
No 323
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.74 E-value=6 Score=31.89 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK---- 209 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 209 (353)
|+++...++|.+++...-+.-+.--+........-|-.|.+.+.+..+.++-.......-.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544333322111112233334444555666665555555555433222233335555544443
Q ss_pred -cCChHHHHHHH
Q 018582 210 -EGRLENAEELK 220 (353)
Q Consensus 210 -~g~~~~a~~~~ 220 (353)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 36666666554
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.23 E-value=3.6 Score=31.82 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (353)
+..++.+.+.+++.+++...++-++. .+.|...-..+++.++-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444455555555555555554443 3444444445555556666666555555444
No 325
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.02 E-value=8.6 Score=29.39 Aligned_cols=90 Identities=19% Similarity=0.131 Sum_probs=52.7
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTAN----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 211 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 211 (353)
-+...|++++|..-|......-+.... ..|..-..++.+.+.++.|..--.+.++.++. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 355667777777777776665332211 23444445666677777776666666655533 2222233345666677
Q ss_pred ChHHHHHHHHHHHhc
Q 018582 212 RLENAEELKERARRR 226 (353)
Q Consensus 212 ~~~~a~~~~~~~~~~ 226 (353)
.+++|+.=|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777777765
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.96 E-value=15 Score=32.18 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=68.9
Q ss_pred HhcCCHHHHH-HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582 103 VEAGLFEKAE-RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181 (353)
Q Consensus 103 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (353)
...|++-.|- +++..+......|+...... ......|+++.+...+...... +.....+...++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3455555543 34444443333344333333 3345567777777776655433 223445667777777777888888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
...-..|....+. +..+.......-...|-++++...++++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7777777766655 4444443333344556677777777776654
No 327
>PRK09687 putative lyase; Provisional
Probab=88.78 E-value=12 Score=30.71 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=150.7
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCcHHH
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDI----SGAERVIEEMKRDGRVAADWTT 94 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 94 (353)
+|.......+..+...|. +.+...+..+... +|...-...+.++++.|+. .++...+..+.. ..++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~---~D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL---EDKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh---cCCCHHH
Confidence 566667777777777775 4566666666543 4666666677788888874 467777777644 3467777
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 018582 95 FSNLASIYVEAGLF-----EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI 169 (353)
Q Consensus 95 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (353)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++++..+-.+... ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 66777777665432 223333333332 3466677778888888886 4566666665542 4445555566
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582 170 QVLVNLK-DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 248 (353)
Q Consensus 170 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 248 (353)
.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|. ..+...+-...+.+ + .....+.++...|+.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6666553 24456666666663 4466777788888988888 46666666666543 2 345678888999985
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHH
Q 018582 249 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 284 (353)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (353)
+|+..+..+.+.. ||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~~--------~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYKF--------DDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhhC--------CChhHHHHHHHHHh
Confidence 6899999988865 77776666665553
No 328
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=24 Score=33.93 Aligned_cols=193 Identities=13% Similarity=0.033 Sum_probs=108.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCcHHHHHH-
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKDL--PGAEKCFKEWESGCATYDIRVTNV- 202 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 202 (353)
-|..|+..|...|+.++|+++|.......- .--...+..++..+-+.+.. +-..++-+......+.-...++..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 588899999999999999999999866321 11112333456666555554 445554444443332211111111
Q ss_pred -----------HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--------ChHHHHHH-----HHHH
Q 018582 203 -----------MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG--------DMKLAVDC-----LEKA 258 (353)
Q Consensus 203 -----------li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--------~~~~a~~~-----~~~~ 258 (353)
-+-.|......+-+...++.+....-.++....+.++..|++.= .-+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 23345566677788888888886655567777777877775421 11222222 2222
Q ss_pred HHc--CCCCCCC--CcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-------------cCCCCChhhhHHHHHHHHHc
Q 018582 259 IDT--GRGDGGK--WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-------------AVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 259 ~~~--~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~ 321 (353)
... ...|+.. ..|....|.-..-.+.+.|+.++|..++-.... ....++...|..++..|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 222 2222111 112223333333334578888888887665443 12335788899999998877
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.46 E-value=1.2 Score=22.46 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.+|..+...|...|++++|.+.|++..+..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677788899999999999999999887654
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.03 E-value=13 Score=30.28 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH--H-----HHHHhCCCccCHhHHHH
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM--L-----RRLKMEKVEVSEASKKL 346 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~--~-----~~m~~~~~~p~~~~~~~ 346 (353)
++....+.|..+|.+.+|.++.++....++ .+...|..|+..+...|+.-.+. + ..-...|+..|......
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieew 358 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEW 358 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHH
Confidence 455566788999999999999999999999 99999999999999999932222 2 22235588887766554
No 331
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=87.99 E-value=3.5 Score=26.48 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 018582 40 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 111 (353)
Q Consensus 40 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 111 (353)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +| |+ .|..+++++.+.|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK---EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---Cc--HHHHHHHHHHHcCchhhh
Confidence 4455566655552 222222222222224466666666666666 44 33 344666666666655444
No 332
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.84 E-value=5.9 Score=35.50 Aligned_cols=151 Identities=12% Similarity=0.107 Sum_probs=94.5
Q ss_pred CCcchHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 018582 54 PDSYTYNVWMRALAAVN--DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ 131 (353)
Q Consensus 54 p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (353)
|+..+..+++.-....- .-+-+-.++..|..- ..|-+.+.|...-.+.-.|+...|.+.+.......+.-.-+..-
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~--~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP--NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC--CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 55555555544332221 122233344444332 55666665655555556788888888888775544444445566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582 132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 208 (353)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (353)
.|.+.+.+.|...+|-.++.+..... ...+-++..+.+++.-..+.++|.+.|++..+.... +...-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 67777777888888888887766554 234456777888888888999999999888877643 5666666555444
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.82 E-value=1 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=17.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+..++.+.|++++|.+.|+++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34555666677777777777777664
No 334
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.54 E-value=24 Score=32.81 Aligned_cols=187 Identities=11% Similarity=0.065 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHH-hcCCCCC--chhHHHHHHHHH-hcCCcchHHHHHHHHHHCCCCCCcc-----hHHHHHHHHHhcCCh
Q 018582 2 TEKAEALLEKMK-ELNLGFS--SMPFNSLMTLYA-KTGHPEKIPAIIQEMKASSIMPDSY-----TYNVWMRALAAVNDI 72 (353)
Q Consensus 2 ~~~A~~~~~~m~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~ 72 (353)
+.-|++.++.+. +..++|. +.++-.+...+. ...+++.|...+++.....-+++.. .-..+++.+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345677788887 4444443 345566666665 6789999999999876543223322 123455666666655
Q ss_pred hHHHHHHHHHHHcCC---CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHH--ccCCH
Q 018582 73 SGAERVIEEMKRDGR---VAADWTTFSNL-ASIYVEAGLFEKAERALKELENRN---AHRDLSAYQFLITLYG--QTGNL 143 (353)
Q Consensus 73 ~~a~~~~~~~~~~~~---~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 143 (353)
. |...+++.++.-. ..+-...|..+ +..+...++...|.+.++.+...- ..|-...+..++.+.. +.+.+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 9998888776421 11222333434 334444489999999999885432 2233444444554443 45667
Q ss_pred HHHHHHHHHHHHhCC---------CCChhHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 018582 144 SEVYRIWRSLRLAFP---------NTANISYLNMIQVLV--NLKDLPGAEKCFKEWE 189 (353)
Q Consensus 144 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 189 (353)
+++.+.++++..... .|...+|..+++.++ ..|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788888877643322 234556777766654 5677667766665543
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.49 E-value=4.3 Score=28.17 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 75 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 75 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
..+-+..+.... +.|+..+....++++.+.+|+..|.++|+-++.
T Consensus 68 vrkglN~l~~yD-lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYD-LVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccc-cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444555544 666666666667777777777777777766644
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.33 E-value=9 Score=27.67 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=21.6
Q ss_pred cCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 175 LKDLPGAEKCFKEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
.++.+++..+++.+.-..+. +...++. ...+...|++.+|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555554432221 1222222 22234455555555555555543
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.31 E-value=1.2 Score=22.11 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 276 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+-.+..++.+.|++++|.+.|+++.+.-|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44567788889999999999999988665
No 338
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.30 E-value=13 Score=30.04 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=76.3
Q ss_pred HHHHhcCCcchHHHHHHHHHHC-----CCCCCcc--------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH
Q 018582 29 TLYAKTGHPEKIPAIIQEMKAS-----SIMPDSY--------TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF 95 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 95 (353)
+...-..+|..|++..++-.+. +...+.. ....=|.+++..+++.++....-+-.+.. .+.-..+.
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p-EklPpkIl 121 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP-EKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHH
Confidence 3344567888888887776542 1111211 12334678888888888877665554432 23334455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc-----cCCHHHHHHHH
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ-----TGNLSEVYRIW 150 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 150 (353)
..-|-.|.+.+++..+.++-..-.+..-..+...|..++..|.. .|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 66677788889988888888877654333344557776666554 68888888776
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.24 E-value=5.3 Score=33.18 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=24.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 018582 170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKE 221 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (353)
+-|.+.|++++|...|....... +.|.+++..-..+|.+..++..|..=..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 34455555555555555544332 1144455555555555555554444333
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.64 E-value=3.2 Score=30.98 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHhcCCCCCchhH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPF 24 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~ 24 (353)
++.|++-.+.-...++ .|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL 28 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNL 28 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHH
Confidence 4556666666555443 444443
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.47 E-value=2.8 Score=20.96 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.45 E-value=2.2 Score=23.39 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKELE 119 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~ 119 (353)
|..+|...|+.+.|.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444555555555555555444
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.07 E-value=11 Score=27.29 Aligned_cols=72 Identities=15% Similarity=0.001 Sum_probs=42.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 244 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
..++.+++..++..|.-.... .+...++.. ..+...|+|++|.++|+.+.+.+. -.+..-..+..++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-----~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~-~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-----LKELDMFDG--WLLIARGNYDEAARILRELLSSAG-APPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-----ccccchhHH--HHHHHcCCHHHHHHHHHhhhccCC-CchHHHHHHHHHHHhcCC
Confidence 467888888888888776511 123333333 346678888888888888777654 223333333334444444
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.66 E-value=24 Score=31.99 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 174 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (353)
.+.++..+-+.|-.++|+++- +|.... .....+.|+.+.|.++..+. .+..-|..|.++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence 345566666666666665542 222111 12234556666666655443 244556666666666
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 018582 175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC 254 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 254 (353)
.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |. . .-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~-A----F~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NL-A----FLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-ch-H----HHHHHHcCCHHHHHHH
Confidence 6676666666655432 233444555555555444444444444422 22 1 1234445666666655
Q ss_pred HHH
Q 018582 255 LEK 257 (353)
Q Consensus 255 ~~~ 257 (353)
+..
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 544
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.22 E-value=2.8 Score=22.99 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=16.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 018582 62 WMRALAAVNDISGAERVIEEMKRDG 86 (353)
Q Consensus 62 ll~~~~~~~~~~~a~~~~~~~~~~~ 86 (353)
+..+|...|+.+.|..+++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566667777777777777766544
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.11 E-value=31 Score=31.68 Aligned_cols=179 Identities=11% Similarity=-0.047 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHH---HHhcCCcchHHHHHHHHHH-------CCCCCCcchHHHHHHHHHhcC--
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTL---YAKTGHPEKIPAIIQEMKA-------SSIMPDSYTYNVWMRALAAVN-- 70 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 70 (353)
..|.+.++...+.|. ......-.++.. +....+.+.|+..|..+.+ .| ......-+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 356666666666652 111111111111 3345677777777777765 34 3334555555665543
Q ss_pred ---ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH--ccCC
Q 018582 71 ---DISGAERVIEEMKRDGRVAADWTTFSNLASIYVE---AGLFEKAERALKELENRNAHRDLSAYQFLITLYG--QTGN 142 (353)
Q Consensus 71 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 142 (353)
+.+.|..++......| .|+.... +..++.. ..+...|.++|......|.. +..-+..++.... -..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 4556777777777765 3444432 2222222 23466777777777666543 2222222211111 2346
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582 143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
...|..++.+..+.|. |...--...+..+.. +.++.+.-.+..+...+
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 6777777777766663 221111222223333 56666655555555544
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.72 E-value=7.5 Score=27.05 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
..+-+..+...+ +.|++.+...-+++|.+-+|+..|.++|+-++..-. +....|-.+++
T Consensus 68 vrkglN~l~~yD------lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g-~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYD------LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG-AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccc------cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc-cHHHHHHHHHH
Confidence 445556666666 569999999999999999999999999998876544 44444555543
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.43 E-value=2 Score=20.26 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=7.0
Q ss_pred HHHHHhcCChHHHHHHH
Q 018582 204 IGAYAKEGRLENAEELK 220 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~ 220 (353)
...+...|++++|..++
T Consensus 8 a~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33344444444444433
No 349
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.18 E-value=13 Score=26.75 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGR----VAADWTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
+.++.-....+++.....+++.+..... -..+...|..++.+..+..- ---+..+|.-+.+.+.++++.-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444555555554444432110 12344556666666655444 334555666666555666666666666
Q ss_pred HHHHcc
Q 018582 135 TLYGQT 140 (353)
Q Consensus 135 ~~~~~~ 140 (353)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 666554
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=84.16 E-value=22 Score=31.10 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCchh--HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChhHHHHHH
Q 018582 7 ALLEKMKELNLGFSSMP--FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY--TYNVWMRALAAVNDISGAERVI 79 (353)
Q Consensus 7 ~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~ 79 (353)
++++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 45566666676555432 233344445555543 344445556555432 1223344555667766554444
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.69 E-value=42 Score=32.09 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=56.8
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCChh-------HHHHHH-HHHHhcCChhHHHHHHHHHHhc----CCCCcHHHHHHHH
Q 018582 137 YGQTGNLSEVYRIWRSLRLAFPNTANI-------SYLNMI-QVLVNLKDLPGAEKCFKEWESG----CATYDIRVTNVMI 204 (353)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li 204 (353)
.....++.+|..++.++...-..|+.. .+..+- ......|+++++.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888876553333222 232222 1234567888888877776542 2334566677777
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 018582 205 GAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~ 225 (353)
.+..-.|++++|..+..+..+
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHH
Confidence 888888999998888776654
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.85 E-value=24 Score=28.72 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=30.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH-------HHHHHHHHhcCChHHHHHHHH
Q 018582 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT-------NVMIGAYAKEGRLENAEELKE 221 (353)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~a~~~~~ 221 (353)
+.+-..+.+++++|...+.++...|...+..+. ..+...|...|++....+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 445556666777777777777766655544332 334555555555555444433
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.71 E-value=18 Score=27.17 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC----C-------HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTG----N-------LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
++|..-|++.....+. ...++..+..+|...+ + +++|.+.|++..+ ..|+...|..-+....
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH----
Confidence 3344444444443332 2345555555554432 2 3444444444444 3467777777766553
Q ss_pred hhHHHHHHHHHHhcCC
Q 018582 178 LPGAEKCFKEWESGCA 193 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~ 193 (353)
+|-++..++.+.+.
T Consensus 125 --kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 --KAPELHMEIHKQGL 138 (186)
T ss_dssp --THHHHHHHHHHSSS
T ss_pred --hhHHHHHHHHHHHh
Confidence 45666666665543
No 354
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=82.13 E-value=34 Score=29.89 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
...|+.-|...|+..+|..+++++ |++ +--....+.+++.+.-+.|+-...+.+++..-..|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL---gmP----fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL---GMP----FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh---CCC----cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 456777777888888888777664 433 223455677777777777776666666666555554
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.68 E-value=35 Score=29.80 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=38.5
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH--HHHHHHHHHHhcC
Q 018582 31 YAKTGHPEKIPAIIQEMKASSIMPDSYT--YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT--TFSNLASIYVEAG 106 (353)
Q Consensus 31 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 106 (353)
.++.|+.+- ++.+.+.|..|+... -.+.+..++..|+.+-+ +.+.+.| ..|+.. .....+...+..|
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~g-a~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHG-AIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCC-CCccccCCCcccHHHHHHHCC
Confidence 344565543 444455676665532 23445555667776543 3344445 333322 1123455555667
Q ss_pred CHHHHHHHHH
Q 018582 107 LFEKAERALK 116 (353)
Q Consensus 107 ~~~~a~~~~~ 116 (353)
+.+.+..+++
T Consensus 80 ~~~~v~~Ll~ 89 (413)
T PHA02875 80 DVKAVEELLD 89 (413)
T ss_pred CHHHHHHHHH
Confidence 7766555554
No 356
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.97 E-value=40 Score=29.92 Aligned_cols=118 Identities=11% Similarity=-0.043 Sum_probs=75.5
Q ss_pred HHHHhcCChHHHHHHHHHHH---hcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHH-------cCCCCCCCC
Q 018582 205 GAYAKEGRLENAEELKERAR---RRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAID-------TGRGDGGKW 269 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~ 269 (353)
+.+.-.|++.+|.+++...- ..|...+ -..||.|...+.+.|.+..+..+|.+.++ .|.+|...+
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556789999998886643 1221111 12345665566677777777777777664 353332211
Q ss_pred cc----cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 270 VP----SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 270 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
.. ...+.....-.|...|++-.|.+-|.+....-. .++..|-.|..+|.-..+
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh-~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH-RNPRLWLRLAECCIMALQ 384 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh
Confidence 11 122333344567889999999999998887666 899999999999976543
No 357
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=31 Score=28.17 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH-------HHHHHHHHHccCCHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSA-------YQFLITLYGQTGNLSEVYRIWR 151 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~ 151 (353)
+.+-..+.+++++|+..+.++...|...|..+ ...+...|...|++...-+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 45556667777777777777777776655433 3344555666666555444443
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.97 E-value=8.2 Score=24.34 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=7.9
Q ss_pred HHHHHHHHccCCHHHHHH
Q 018582 131 QFLITLYGQTGNLSEVYR 148 (353)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~ 148 (353)
..++.+|+..|++.++++
T Consensus 47 G~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 359
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=79.64 E-value=16 Score=26.44 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=29.4
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 018582 116 KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (353)
+.+.+.|..++. .-..++..+...+++-.|.++++++.+.++..+..|.-..++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334444544333 334444555555555666666666666555444444434444444443
No 360
>PRK10941 hypothetical protein; Provisional
Probab=79.33 E-value=33 Score=27.98 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=56.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CChhhhH
Q 018582 235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-LGVEVFE 312 (353)
Q Consensus 235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 312 (353)
.+.+-.+|.+.++++.|+.+.+.+.... |+ +.-+.--.-.|.+.|.+..|..-++...+..|. |+.....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~--------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD--------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3456677889999999999999999986 54 555666677799999999999999988876652 4444444
Q ss_pred HHHHHH
Q 018582 313 PLIRTY 318 (353)
Q Consensus 313 ~l~~~~ 318 (353)
..+...
T Consensus 256 ~ql~~l 261 (269)
T PRK10941 256 AQIHSI 261 (269)
T ss_pred HHHHHH
Confidence 444443
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.64 E-value=9.8 Score=24.01 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=19.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChhHHHH
Q 018582 139 QTGNLSEVYRIWRSLRLAFPNTAN--ISYLNMIQVLVNLKDLPGAEK 183 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 183 (353)
...+.++|+..|....+.-..+.. .++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443222211 133444455555555544433
No 362
>PRK13342 recombination factor protein RarA; Reviewed
Probab=78.49 E-value=46 Score=29.21 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=7.6
Q ss_pred cCChhHHHHHHHHHH
Q 018582 69 VNDISGAERVIEEMK 83 (353)
Q Consensus 69 ~~~~~~a~~~~~~~~ 83 (353)
.|+...+..+++.+.
T Consensus 187 ~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 187 NGDARRALNLLELAA 201 (413)
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555555443
No 363
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.39 E-value=4.8 Score=18.95 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.+..+...+...|+++.|...++...+..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 466677788888999999998888776543
No 364
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=78.14 E-value=21 Score=26.96 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHhcCCCCC--hhhHH-----HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh
Q 018582 213 LENAEELKERARRRGADPN--AKTWE-----IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 285 (353)
Q Consensus 213 ~~~a~~~~~~~~~~~~~p~--~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (353)
++.|+.+++.+.+.-..|. ..... ..+-.|.+.|.+++|.+++++.... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---------~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---------PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---------CCchhHHHHHHHHHH
Confidence 4566666666665422221 11222 2244678888888888888888774 444444444444444
Q ss_pred cCC
Q 018582 286 EKD 288 (353)
Q Consensus 286 ~~~ 288 (353)
.++
T Consensus 156 ~Kd 158 (200)
T cd00280 156 EKD 158 (200)
T ss_pred ccc
Confidence 443
No 365
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.09 E-value=54 Score=29.78 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 275 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
+..+|...+..-.+.|+.+.+.-+|++..-. +..-...|-..+.-....|+.+.|..++....+-..+ -.|....
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k----~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK----KTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC----CCcHHHH
Confidence 4566667777777777777777777775532 1222344444445455557777777776666655422 1233333
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 276 IRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
+.+.+ .-..|++..|..+++.+.+.-
T Consensus 371 ~~a~f--~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 371 LEARF--EESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHHH--HHhhccHHHHHHHHHHHHhhC
Confidence 33322 234568888888888877644
No 366
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.48 E-value=18 Score=24.09 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=21.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 171 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
.+.+.|++++|..+.+.. +.||...|.+|.. .+.|..+++..-+.+|..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 344445555554444332 2444444443332 2344444444444444443
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.15 E-value=48 Score=30.58 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=27.9
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 112 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
...++.+..+-+-.+...-..++..|.+.|-.+.|.++.+.+-..-. ...-|...+..+.+.|+...+..+-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444333334455555566666666666666666665433322 12334455555556666555444444433
No 368
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.86 E-value=40 Score=27.66 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
+++.....|...|.+.+|.++-+....-++ .+...+-.++..+...|+--.+.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445556677778888888887777766544 466677777888888887666666666653
No 369
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.80 E-value=6 Score=19.24 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=23.6
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582 287 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 317 (353)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (353)
|+.+.|..+|+++....+ .+...|...+.-
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHHH
Confidence 567889999999998777 778888776653
No 370
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.78 E-value=12 Score=22.39 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.++...++++.+.... -|-.-.-.+|.++...|++++|.++++.+.+
T Consensus 5 ~~~~~~~~~~~lR~~R--------HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQR--------HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455566666665543 4555667788999999999999999988765
No 371
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=75.68 E-value=41 Score=27.80 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----------cCCHHH
Q 018582 41 PAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----------AGLFEK 110 (353)
Q Consensus 41 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 110 (353)
.++|+.|.+.++.|.-.++.-+.-.+.+.=.+..++.+++.+.... .. |..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4677777777788887777766666777777888888888877642 22 4445554443 578887
Q ss_pred HHHHHHH
Q 018582 111 AERALKE 117 (353)
Q Consensus 111 a~~~~~~ 117 (353)
..++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 7777764
No 372
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=75.66 E-value=47 Score=27.81 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=77.2
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHHccC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 018582 98 LASIYVEAGL---FEKAERALKELENRNA----HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ 170 (353)
Q Consensus 98 l~~~~~~~~~---~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (353)
++...+ |+ .+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... ++...-..++.
T Consensus 135 ~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~ 209 (324)
T PF11838_consen 135 LLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLS 209 (324)
T ss_dssp HHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHH
T ss_pred HHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHH
Confidence 344444 44 5677888888776421 345556667777777787766655555544432 35566778888
Q ss_pred HHHhcCChhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCh--HHHHHHHHH----HHhcCCCCChhhHHHHHHHHH
Q 018582 171 VLVNLKDLPGAEKCFKEWESGC-ATYDIRVTNVMIGAYAKEGRL--ENAEELKER----ARRRGADPNAKTWEIFSDYYL 243 (353)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~----~~~~~~~p~~~~~~~li~~~~ 243 (353)
+++...+.+...++++.+...+ ++ ..... .++..+...+.. +.+++.+.. +.+. ..++......++..+.
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~~v~-~~d~~-~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~ 286 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSNDKVR-SQDIR-YVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFA 286 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTSTS--TTTHH-HHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCC
T ss_pred hhhccCCHHHHHHHHHHHcCCcccc-cHHHH-HHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHh
Confidence 8888889888889999888754 33 33333 344444433333 666666543 4433 2333335556666544
Q ss_pred c
Q 018582 244 R 244 (353)
Q Consensus 244 ~ 244 (353)
.
T Consensus 287 ~ 287 (324)
T PF11838_consen 287 G 287 (324)
T ss_dssp T
T ss_pred c
Confidence 4
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.41 E-value=20 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
.|+...|..++.++...|+.++|.+...++..-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666666666666666666666666666554
No 374
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.83 E-value=29 Score=25.08 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNA-----HRDLSAYQFLITLYGQTGN-LSEVYRIWRSLRLAFPNTANISYLNM 168 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (353)
.|.++.-....+++.....+++.+..... ..+...|++++.+..+..- ---+..+|.-+++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35666666666677776666666522110 1234456666666644444 33445556666655556666666666
Q ss_pred HHHHHhc
Q 018582 169 IQVLVNL 175 (353)
Q Consensus 169 ~~~~~~~ 175 (353)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665544
No 375
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.79 E-value=13 Score=22.25 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~ 118 (353)
+|.+|...|++++|.++++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444444445555544444444
No 376
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.78 E-value=62 Score=28.84 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=134.8
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhcC------CcchHHHHHHHHHHC-CCCCC-cchHHHHHHHHHhcCChhHHHHH
Q 018582 7 ALLEKMKELNLGFSSMPFNSLMTLYAKTG------HPEKIPAIIQEMKAS-SIMPD-SYTYNVWMRALAAVNDISGAERV 78 (353)
Q Consensus 7 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------~~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 78 (353)
.||+..... -|+...|+..|..|...- .......+|+..... +..++ ...|..+.-.+...+ ++...
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~---~~r~~ 377 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLN---EAREV 377 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccc---hHhHH
Confidence 444444431 145566777777665532 333445555555443 23333 334555544444443 33333
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcC-CHHH-HHHHHHHHHHccCCCCHHHHHHHHHHHHccCC-HHHH-H-HHHHHH
Q 018582 79 IEEMKRDGRVAADWTTFSNLASIYVEAG-LFEK-AERALKELENRNAHRDLSAYQFLITLYGQTGN-LSEV-Y-RIWRSL 153 (353)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a-~-~~~~~~ 153 (353)
-..+...+ +..+...|..-+....+.. +++- -..+|..+...-..+....|+... .|+ .... + .++...
T Consensus 378 a~~l~~e~-f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 378 AVKLTTEL-FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHhhHHH-hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 33344333 5566666655555554332 2221 223333343332233334444443 222 2211 1 122223
Q ss_pred HHhCCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--cCChHHHHHHHHHHHh-cCCC
Q 018582 154 RLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK--EGRLENAEELKERARR-RGAD 229 (353)
Q Consensus 154 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~-~~~~ 229 (353)
... ..|+..|+ +.++..+.+.|-..+|..++..+.... +|+...|..+|+.-.. .-+..-+...|+.+.. -|
T Consensus 452 ~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 452 LSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-- 527 (568)
T ss_pred HHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--
Confidence 333 34566655 567888889999999999999998874 6788889888875433 2237788899998874 45
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 230 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 230 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
.|+..|...+.--...|..+.+-.++.+..+.
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHHh
Confidence 57778877766666888888888777776654
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.71 E-value=30 Score=25.09 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 018582 8 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 70 (353)
Q Consensus 8 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 70 (353)
+.+.+.++|++++. --..++..+.+.+..-.|.++|+.+.+.+...+..|....++.+...|
T Consensus 8 ~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455556654332 244555666666666667777777766654444444444444444444
No 378
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.71 E-value=51 Score=27.77 Aligned_cols=116 Identities=10% Similarity=0.033 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHH
Q 018582 146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE---GRLENAEELKER 222 (353)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~ 222 (353)
-+.++++..+.++ .+.......+..+.+..+.+...+-++++....+. +...|...++..... -.++....+|.+
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3444454444433 23344445555555555555555555555554322 455555555544331 234444444433
Q ss_pred HHhc------CC----CCCh-------hhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582 223 ARRR------GA----DPNA-------KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 223 ~~~~------~~----~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 263 (353)
.... +. .+-. ..+..+...+.+.|..+.|..+++-+++.+.
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 2210 10 0001 1122223334567888888888888888764
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.15 E-value=43 Score=26.65 Aligned_cols=117 Identities=10% Similarity=0.011 Sum_probs=74.8
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCCH
Q 018582 31 YAKTGHPEKIPAIIQEMKASSIMPDSYT-YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNLASIYVEAGLF 108 (353)
Q Consensus 31 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 108 (353)
|....+++.|+.-|.+... +.|+..+ |..-+-++.+..+++.+..--....+ +.||.. ..-.+..+......+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 4445678888887777666 4577754 45667778888888888777777776 445543 344566777788888
Q ss_pred HHHHHHHHHHH----HccCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018582 109 EKAERALKELE----NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 152 (353)
Q Consensus 109 ~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (353)
+.|+..+.+.. ...+.+-...+..|..+--..-...+..++.+.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 88888888763 333444455566665554444444444444443
No 380
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.63 E-value=38 Score=25.91 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCc--HHHH
Q 018582 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL-----NMIQVLVNLKDLPGAEKCFKEWESGCATYD--IRVT 200 (353)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 200 (353)
..|..++.... .+.+ +.....+.+..... ..+|. .+...+...+++++|...++.........+ ..+-
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~---~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG---KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHH
Confidence 34555554443 2333 44445555554432 22332 234567788899999888887764321111 1122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
-.|.+.....|.+++|..+++...+.+.. ......-.+.+...|+-++|..-|...+..+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23455667788999999988887665332 2223344567888899999999999988875
No 381
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.36 E-value=12 Score=21.01 Aligned_cols=32 Identities=6% Similarity=0.205 Sum_probs=17.5
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCcchHHHHHH
Q 018582 33 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 64 (353)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 64 (353)
+.|-.+++..+++.|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34555555566666655555555555554443
No 382
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.79 E-value=83 Score=29.39 Aligned_cols=202 Identities=14% Similarity=0.110 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HccCCCC--HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHhCCCCChh-
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELE-NRNAHRD--LSAYQFLITLYG-QTGNLSEVYRIWRSLRLAFPNTANI- 163 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~- 163 (353)
+.+...|..||.. |++.++.+. +..+.|. ..++-.+...+. ...+++.|...+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 3444555555543 344455544 3223332 334444555554 5677888888888654432222221
Q ss_pred ----HHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCCC
Q 018582 164 ----SYLNMIQVLVNLKDLPGAEKCFKEWESGC----ATYDIRVTNVM-IGAYAKEGRLENAEELKERARRRG---ADPN 231 (353)
Q Consensus 164 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~---~~p~ 231 (353)
.-..++..+.+.+... |...+++..+.- ..+-...+.-+ +..+...++...|.+.++.+...- ..|.
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234556666666655 777777755321 22223333333 233333478888999888876431 2344
Q ss_pred hhhHHHHHHHHH--ccCChHHHHHHHHHHHHcCC----CCCCCCcccHHHHHHHHHHH--HhcCChhhHHHHHHHHHh
Q 018582 232 AKTWEIFSDYYL--RNGDMKLAVDCLEKAIDTGR----GDGGKWVPSSETIRTFMRHF--EQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 232 ~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 301 (353)
...+..++.+.. +.+..+.+.+.++++..... .+.. ..|...+|..+++.+ ...|+++.+...++++.+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555543 45666777777777744322 1122 345677788887754 467777777776665543
No 383
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.33 E-value=58 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.012 Sum_probs=16.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC
Q 018582 203 MIGAYAKEGRLENAEELKERARRRGA 228 (353)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (353)
+......+|..+.|..+++.+.+.++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33444556777777777777766543
No 384
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.71 E-value=4.9 Score=28.31 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=18.1
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQFLITL 136 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (353)
.|.-..|..+|+.|.+.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555566666666666666666 45555543
No 385
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=71.55 E-value=8.4 Score=23.33 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=44.4
Q ss_pred CcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582 269 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322 (353)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (353)
+.|....++.++...++..-.+++...+.+....|. .+..+|..-++.+++..
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 347788899999999999899999999999999998 88888988888888743
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.53 E-value=28 Score=31.56 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=64.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCCh
Q 018582 210 EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 289 (353)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 289 (353)
.|+...|.+.+.......+.-..+....|...+.+.|..-.|-.++...+.... ..+-++..+.+++....+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-------sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-------SEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-------cCchHHHhcchhHHHHhhh
Confidence 466667777666655432222333444555555666666667666666655531 3455666777777777888
Q ss_pred hhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 290 DGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
+.|.+.|+...+..+ .++..-+.|...-+
T Consensus 693 ~~a~~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 888888888887777 66776666665544
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.08 E-value=40 Score=25.78 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=15.9
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 190 (353)
|+..+|..++.++...|+.++|.+...++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555443
No 388
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=69.37 E-value=37 Score=28.34 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=9.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~ 118 (353)
|..+..+.|+..+|.+.|+++
T Consensus 281 LAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 333334444444444444444
No 389
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.33 E-value=71 Score=27.19 Aligned_cols=199 Identities=12% Similarity=0.099 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----ccCCCCHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELEN----RNAHRDLSAY 130 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 130 (353)
.+.+-.++.+.+......++..+.... ..|.. .....++..+.+.+++..++..++.-.. .+...++..+
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k--~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDK--MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHH--hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 344555566666665555555554443 23322 2344577777788887776666554221 1111121111
Q ss_pred -HHHH---HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH--------HHHhcCCh---h-----HHHHHHHHHH-
Q 018582 131 -QFLI---TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ--------VLVNLKDL---P-----GAEKCFKEWE- 189 (353)
Q Consensus 131 -~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~---~-----~a~~~~~~~~- 189 (353)
.-.. -.|...++++.|+.+|....-. |....-...+. .+.-.|+. + .|...++-|.
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~ 259 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSN 259 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCc
Confidence 0010 1244678999999999876532 32222122222 23334544 1 1222222111
Q ss_pred ------hcCCCCcHHHHHHHHHH----HHhcCChHHHHHHHHHHHhcCCCCChhhHHHH----HHHHHccCChHHHHHHH
Q 018582 190 ------SGCATYDIRVTNVMIGA----YAKEGRLENAEELKERARRRGADPNAKTWEIF----SDYYLRNGDMKLAVDCL 255 (353)
Q Consensus 190 ------~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~~~~~~a~~~~ 255 (353)
..-.+-......+++.. +.+-++..-+...+..+.++++.--..||.++ |....+.+..++|.+..
T Consensus 260 pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~I 339 (422)
T KOG2582|consen 260 PYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYI 339 (422)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHH
Confidence 00000011112333322 23445666666666666665544445566555 33334567778888888
Q ss_pred HHHHHcC
Q 018582 256 EKAIDTG 262 (353)
Q Consensus 256 ~~~~~~~ 262 (353)
-.|.+.|
T Consensus 340 lqmie~~ 346 (422)
T KOG2582|consen 340 LQMIEDG 346 (422)
T ss_pred HHHhccC
Confidence 8887775
No 390
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.26 E-value=9.5 Score=33.26 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=62.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 318 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (353)
..+...+.++.|..++.++++.. |+-. .|..-..++.+.+++..|..=+..+.+..| .....|-.=..++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld--------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD--------PNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKAYVRRGTAV 82 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC--------CcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhheeeeccHHH
Confidence 34455677888888888888776 6433 333334677778888888777777777665 4444444444444
Q ss_pred HHcCCChHHHHHHHHhCCCccCHhHHHHHHHHh
Q 018582 319 AAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351 (353)
Q Consensus 319 ~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 351 (353)
.+.++.-+++........+.|+..-+.-.+.-|
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 444444455555555556677666555544444
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.77 E-value=1.1e+02 Score=29.09 Aligned_cols=46 Identities=9% Similarity=0.249 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
..+...|..+...|++++|-...-.|... +..-|...+..+...++
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45667777777777777777766666432 33444444444444433
No 392
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.86 E-value=65 Score=26.16 Aligned_cols=181 Identities=13% Similarity=0.174 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhcCCcchHHHHHHHHHHC---CC--CCCcchHHHHHHHHHhcCChh
Q 018582 2 TEKAEALLEKMKELNLGFSS---MPFNSLMTLYAKTGHPEKIPAIIQEMKAS---SI--MPDSYTYNVWMRALAAVNDIS 73 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~ 73 (353)
+++|+.-|....+.....-. .+...++..+.+.+++++..+.|.+|... .+ .-+....|.++...+.+.+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 46777777777654322222 23445677788888888888888877541 11 134456677777777777766
Q ss_pred HHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-----------CHHHHHHHHHHHH
Q 018582 74 GAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELENRNAHR-----------DLSAYQFLITLYG 138 (353)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~ 138 (353)
....+|+.-...-....+. .|-..|...|...|++.+..++++++..+-..- -...|..=|..|.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 6666665433210011111 122357777888888888888888775432211 1345666777777
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHH-----HhcCChhHHHH
Q 018582 139 QTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVL-----VNLKDLPGAEK 183 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~ 183 (353)
...+-.+...+|++..... -.|.+... .+|.-| .+.|++++|..
T Consensus 203 ~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 7777777777777654332 12333332 233333 44567776654
No 393
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.82 E-value=6.8 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=20.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 209 KEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
..|.-..|..+|..|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34556677777777777777665 45566554
No 394
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.67 E-value=1.3e+02 Score=29.44 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHH
Q 018582 24 FNSLMTLYAKTGHPEKIPAIIQEMKA 49 (353)
Q Consensus 24 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 49 (353)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 77777788888888888888877765
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.14 E-value=33 Score=22.51 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=11.8
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 018582 64 RALAAVNDISGAERVIEEMKR 84 (353)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~~~~ 84 (353)
..+...|++++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666665554
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.11 E-value=32 Score=22.30 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=4.5
Q ss_pred ChHHHHHHHHHH
Q 018582 212 RLENAEELKERA 223 (353)
Q Consensus 212 ~~~~a~~~~~~~ 223 (353)
+.+.|.+++..+
T Consensus 51 ~~~~ar~LL~~L 62 (88)
T cd08819 51 NESGARELLKRI 62 (88)
T ss_pred cHHHHHHHHHHh
Confidence 333333333333
No 397
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.49 E-value=30 Score=22.66 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=35.6
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCCCC--cccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 243 LRNGDMKLAVDCLEKAIDTGRGDGGKW--VPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.+.|++..|.+.+.+..+......... .+-....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467788888766666555421110000 01122334455567789999999999998877
No 398
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=64.44 E-value=28 Score=32.04 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 018582 97 NLASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~ 118 (353)
-++..|.+.|-.+.|.++.+.+
T Consensus 410 k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 410 KLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444433
No 399
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.44 E-value=1.2e+02 Score=27.83 Aligned_cols=155 Identities=13% Similarity=0.035 Sum_probs=95.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCC------------cHHHHHHHHHHHHhcCCHHHHHH-------HHHHHHHccCCCC---
Q 018582 69 VNDISGAERVIEEMKRDGRVAA------------DWTTFSNLASIYVEAGLFEKAER-------ALKELENRNAHRD--- 126 (353)
Q Consensus 69 ~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~--- 126 (353)
+..+++|...|...... ..| ...+.-.+..++...|+.+-|-. .|+......+.|.
T Consensus 251 s~sYeqaq~~F~~av~~--~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV--HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred chHHHHHHHHHHHHHhh--cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 34567788777776654 233 34445556677788888665544 4455544443332
Q ss_pred ----------HHHHHH---HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChhHHHHHHHHHHh--
Q 018582 127 ----------LSAYQF---LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV-NLKDLPGAEKCFKEWES-- 190 (353)
Q Consensus 127 ----------~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~-- 190 (353)
-..|-+ -|..+.+.|=|..|+++-+.+.+-.+.-|+.....+|+.|+ +..++.-.+++++....
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 122222 24566788999999999988888777667788888888876 56777777777777643
Q ss_pred -cCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHh
Q 018582 191 -GCATYDIRVTNVMIGAYAKEGR---LENAEELKERARR 225 (353)
Q Consensus 191 -~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~ 225 (353)
...-||-..-.+|...|..... -+.|...+.+...
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 2234454444456666665544 3455555555444
No 400
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=64.36 E-value=82 Score=26.09 Aligned_cols=52 Identities=8% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
++....+.++.....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444442 222334445566667777777777666544
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.32 E-value=47 Score=23.33 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 250 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
.+.++|..|...|+. .-....|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG-----~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG-----TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTS-----TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcc-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566666666666542 23455566666666666666666666654
No 402
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.17 E-value=73 Score=25.42 Aligned_cols=49 Identities=24% Similarity=0.227 Sum_probs=28.2
Q ss_pred HHHHHHHHHHH---hcCCCCChhhHHHHHH-----HHHccCChHHHHHHHHHHHHcC
Q 018582 214 ENAEELKERAR---RRGADPNAKTWEIFSD-----YYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 214 ~~a~~~~~~~~---~~~~~p~~~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+.|.+.|++.. +..++|...++-.++- .|--.|+.++|.++.+...+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45555555543 2225566555544433 2345799999998887766653
No 403
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.09 E-value=2.3e+02 Score=31.13 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
..+|....+....+|+++.|...+-+..+.+ -+..+--...-....|+...|..++++..+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 3567777777777889988888877776664 223445556677888899999999888886544
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.07 E-value=23 Score=29.12 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 018582 89 AADWTT-FSNLASIYVEAGLFEKAERALKELENRNAH 124 (353)
Q Consensus 89 ~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 124 (353)
.|+... |+..|....+.||+++|++++++.++.|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344443 457777777777777777777777776655
No 405
>PRK10941 hypothetical protein; Provisional
Probab=63.37 E-value=82 Score=25.75 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHH
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 278 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
..+.+-.+|.+.++++.|+++.+.+....+ .+..-+.--.-.|.+.|.+..|..-++..++.-.. .|+......
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~-----dp~a~~ik~ 256 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE-----DPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-----chhHHHHHH
Confidence 345566778888999999999999887632 24445555666688889999999888888877521 255555555
Q ss_pred HHHHHH
Q 018582 279 FMRHFE 284 (353)
Q Consensus 279 l~~~~~ 284 (353)
.+....
T Consensus 257 ql~~l~ 262 (269)
T PRK10941 257 QIHSIE 262 (269)
T ss_pred HHHHHh
Confidence 555443
No 406
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.27 E-value=25 Score=19.69 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHH
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQ 131 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (353)
.|-.+++..++++|.+.|+..+...+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 333444444444444444444433333
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.63 E-value=20 Score=29.40 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 165 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (353)
|+..|....+.||.++|+.++++.+..|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 457777777788888888888877777765433343
No 408
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=62.37 E-value=63 Score=24.13 Aligned_cols=60 Identities=7% Similarity=-0.012 Sum_probs=30.8
Q ss_pred HHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 018582 12 MKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDI 72 (353)
Q Consensus 12 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 72 (353)
+...|++.+.. =..++..+...++.-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34455533322 2344444444455556666666666665555555555555555555543
No 409
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.30 E-value=45 Score=22.37 Aligned_cols=51 Identities=10% Similarity=0.009 Sum_probs=23.1
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
.+.+.|++++|..+.+.+ +.||...|..+- -.+.|-.+++..-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 344555555555544433 344444443332 234444444444444444444
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.18 E-value=49 Score=22.50 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=12.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444555555555555555554443
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.87 E-value=49 Score=26.55 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582 235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (353)
...+..-|.+.|++++|.++|+.+...-.. .+=+.+...+...+..++.+.|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRR-EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345667788889999999998887543100 0001244566777778888888888777665444
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.46 E-value=1e+02 Score=26.87 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-----C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGR-----V-AADWTTFSNLASIYVEAGLFEKAERALKELE 119 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (353)
...+++.++-.||+..|+++++.+.-... + .-...++-.+.-+|.-.+++.+|.++|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999999999886643110 1 1234456667788888999999999998764
No 413
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=60.42 E-value=43 Score=21.55 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=19.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 109 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (353)
...+.+.+.++++.+..+| ..+|..+.+++...|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG-----~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRG-----KQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhcCchH
Confidence 3344566666666666655 234445555555555443
No 414
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.26 E-value=77 Score=26.33 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh----------c
Q 018582 217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----------E 286 (353)
Q Consensus 217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~ 286 (353)
.++++.+.+.++.|.-..+.-+--.+.+.=.+...+.+|+.+.... .. +..|+..|+. .
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~---------~r--fd~Ll~iCcsmlil~Re~il~ 331 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP---------QR--FDFLLYICCSMLILVRERILE 331 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh---------hh--hHHHHHHHHHHHHHHHHHHHh
Confidence 4678888899999999998888888888889999999999988652 22 5555555443 5
Q ss_pred CChhhHHHHHHH
Q 018582 287 KDVDGAEGFLEI 298 (353)
Q Consensus 287 ~~~~~a~~~~~~ 298 (353)
|++....++++.
T Consensus 332 ~DF~~nmkLLQ~ 343 (370)
T KOG4567|consen 332 GDFTVNMKLLQN 343 (370)
T ss_pred cchHHHHHHHhc
Confidence 777777776653
No 415
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.62 E-value=1.6e+02 Score=27.83 Aligned_cols=54 Identities=19% Similarity=0.074 Sum_probs=33.0
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 143 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (353)
+.+...-.....+....|+.++|......+-..|.. .+..++.++..+.+.|..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 344444456677777778777777766666554433 344666666666655544
No 416
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=59.58 E-value=78 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=10.3
Q ss_pred ccCCHHHHHHHHHHHHH
Q 018582 139 QTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~ 155 (353)
+.|+++.|.++++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666666544
No 417
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=58.69 E-value=37 Score=20.29 Aligned_cols=14 Identities=50% Similarity=0.605 Sum_probs=6.0
Q ss_pred cCCHHHHHHHHHHH
Q 018582 105 AGLFEKAERALKEL 118 (353)
Q Consensus 105 ~~~~~~a~~~~~~~ 118 (353)
.|++=+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 34444444444444
No 418
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.20 E-value=34 Score=19.69 Aligned_cols=26 Identities=8% Similarity=0.048 Sum_probs=21.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+.-++.+.|++++|.++.+.+++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 35567889999999999999999976
No 419
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=57.68 E-value=64 Score=31.89 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 018582 95 FSNLASIYVEAG--LFEKAERALKELENR 121 (353)
Q Consensus 95 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 121 (353)
...++.+|.+.+ +++.|+....++.+.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 355677777776 677777777777654
No 420
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=57.26 E-value=79 Score=23.62 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 119 ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
...|+..+. .-..++..+...++.-.|.++++.+.+.++.++..|.--.+..+...|-
T Consensus 18 ~~~GlR~T~-qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTP-QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444332 2233334444444555566666666665555555554444455554443
No 421
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.02 E-value=88 Score=23.78 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=11.9
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 018582 136 LYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~ 155 (353)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45566666666666665544
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.01 E-value=1.4e+02 Score=25.98 Aligned_cols=56 Identities=11% Similarity=-0.037 Sum_probs=35.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHHH--hcCChhHHHHHHHHHHhc
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANI--SYLNMIQVLV--NLKDLPGAEKCFKEWESG 191 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 191 (353)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788888888888888776 444343 3334444443 456677788888776654
No 423
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.67 E-value=48 Score=22.67 Aligned_cols=46 Identities=7% Similarity=0.025 Sum_probs=25.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 018582 27 LMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDI 72 (353)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 72 (353)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666666666665455555555555555555543
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.30 E-value=2.4e+02 Score=28.55 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
|..+++.+-+.+..+.+.++-...++. .+++ ..+++.+.+-....|.+.+|...+-...... .-......++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--rrrdcLRqlv 1061 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--RRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--HHHHHHHHHH
Confidence 667778888888888888887777764 3333 3355677777777888888776654432111 1122345556
Q ss_pred HHHHccCCHH------------HHHH-HHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582 135 TLYGQTGNLS------------EVYR-IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184 (353)
Q Consensus 135 ~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (353)
..++..|.++ +... +++..-...+.-....|..+-..+...+++.+|-.+
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 6666666654 3333 222222222222233455555556677777765443
No 425
>PHA00425 DNA packaging protein, small subunit
Probab=55.21 E-value=42 Score=21.05 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=26.7
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 288 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+.+.|...+..++.-.- ..+..||++...+.++.-
T Consensus 14 DTE~a~~mL~DL~ddek-RtPQLYnAIgKlL~RHkF 48 (88)
T PHA00425 14 DTEMAQRMLADLKDDEK-RTPQLYNAIGKLLDRHKF 48 (88)
T ss_pred hHHHHHHHHHHhcCccc-cChHHHHHHHHHHHHhcc
Confidence 56778888887776555 788999999888877643
No 426
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.08 E-value=1.9e+02 Score=27.22 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=46.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCChHH------HHHHHHHHHhcCCCCChhhHHHH
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEWESG--CATYDIRVTNVMIGAYAKEGRLEN------AEELKERARRRGADPNAKTWEIF 238 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~------a~~~~~~~~~~~~~p~~~~~~~l 238 (353)
+++.+|...|++-.+.++++..... |-+.-...+|..|+.+.+.|.++- |.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6788888888888888888877643 222334566777777777776542 233333322 44467777766
Q ss_pred HHHHHc
Q 018582 239 SDYYLR 244 (353)
Q Consensus 239 i~~~~~ 244 (353)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 427
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.90 E-value=79 Score=22.91 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=30.3
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhc-CCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 11 KMKELNLGFSSMPFNSLMTLYAKT-GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 11 ~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
.+.+.|++++. .=..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34455553332 233444444443 3456666666666666544455555555555555543
No 428
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.63 E-value=90 Score=25.06 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=40.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH----hC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRL----AF-PNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
.-.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566778888888888888887642 22 2344456667778888888888776665444
No 429
>PRK09857 putative transposase; Provisional
Probab=54.62 E-value=1.2e+02 Score=25.08 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 018582 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 230 (353)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 230 (353)
+..++......++.++..++++.+.+.. +.......++.+-+...|..+++.++..+|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4455555555566665666666555442 2233334455555656666566666666666666543
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.26 E-value=1.2e+02 Score=24.96 Aligned_cols=114 Identities=10% Similarity=0.083 Sum_probs=64.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----ccCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHhCCCC
Q 018582 88 VAADWTTFSNLASIYVEAGLFEKAERALKELEN----RNAHRDLSAYQFLIT---LYGQTGNLSEVYRIWRSLRLAFPNT 160 (353)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (353)
...-...+..+...|++.++.+.+.+..++... .|.+.|+ +-+.++ .|....-.++-++..+.|.+.|..-
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv--~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV--FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh--HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 344466778899999999999998888776533 3444443 222222 2333444567777777787776532
Q ss_pred Ch----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582 161 AN----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205 (353)
Q Consensus 161 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (353)
+. .+|..+- +....++.+|-.++.+....--......|...+.
T Consensus 189 eRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 189 ERRNRYKVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVR 235 (412)
T ss_pred HhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHH
Confidence 22 2333332 2334567777777776654322333344444433
No 431
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.06 E-value=79 Score=29.42 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=55.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCC--CCChhhhHHHHHHHHHcCCChH-----HHHHHHHhCCCccCHhHHHHHHHH
Q 018582 278 TFMRHFEQEKDVDGAEGFLEILKKAVD--DLGVEVFEPLIRTYAAAGRTSP-----VMLRRLKMEKVEVSEASKKLLEAI 350 (353)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~-----~~~~~m~~~~~~p~~~~~~~l~~~ 350 (353)
+|+.+|...|++..+.++++.+...+- ..-...||..++...+.|.+.. ..-..++...+.-|..|+.++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 889999999999999999999887443 2334678999999999998332 223445555678888888888765
Q ss_pred h
Q 018582 351 C 351 (353)
Q Consensus 351 c 351 (353)
.
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 4
No 432
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.03 E-value=1.3e+02 Score=25.08 Aligned_cols=75 Identities=7% Similarity=0.045 Sum_probs=38.0
Q ss_pred HHhcCChHHHHHHHHH-HHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh
Q 018582 207 YAKEGRLENAEELKER-ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 285 (353)
Q Consensus 207 ~~~~g~~~~a~~~~~~-~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (353)
..+...+++.....++ |.+.+ -|++.....+-++.....+|.+-.++..+-.- -....|..|+.+++.
T Consensus 265 ~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qal----------rhlK~yaPLL~af~s 333 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQAL----------RHLKQYAPLLAAFCS 333 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHH----------HHHHhhhHHHHHHhc
Confidence 3344455555554444 44443 45655443333333344444443333322111 234567788888888
Q ss_pred cCChhhH
Q 018582 286 EKDVDGA 292 (353)
Q Consensus 286 ~~~~~~a 292 (353)
.|+.+..
T Consensus 334 ~g~sEL~ 340 (412)
T KOG2297|consen 334 QGQSELE 340 (412)
T ss_pred CChHHHH
Confidence 8877654
No 433
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=52.97 E-value=25 Score=21.30 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=15.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
....++-++..+++..-.+.++..+.++.+.|
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444444444444444444555544444
No 434
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.86 E-value=2.7e+02 Score=28.48 Aligned_cols=154 Identities=11% Similarity=0.043 Sum_probs=93.0
Q ss_pred HHHHhcCChhHHHH------HHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH-------HhcCCCCChhhHH
Q 018582 170 QVLVNLKDLPGAEK------CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA-------RRRGADPNAKTWE 236 (353)
Q Consensus 170 ~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~~~p~~~~~~ 236 (353)
......|.+.++.+ ++...-..-.+.....|..+...+.+.|+.++|...-... ......-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444566666666 5543322223446778888888899999999998765432 2222222344566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc-CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-----CC--CCCh
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA-----VD--DLGV 308 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~ 308 (353)
.+.-.+...++...|...+.+.... ++.-....+|...+++.+-..+...++++.|.++++.+... ++ -.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666677888888888777665 22211112233444454444455568899999988877662 21 1455
Q ss_pred hhhHHHHHHHHHcCC
Q 018582 309 EVFEPLIRTYAAAGR 323 (353)
Q Consensus 309 ~~~~~l~~~~~~~g~ 323 (353)
.+|..+.+.+...++
T Consensus 1100 ~~~~~~a~l~~s~~d 1114 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKD 1114 (1236)
T ss_pred hHHHHHHHHHhhhHH
Confidence 667777777766665
No 435
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=52.50 E-value=2.7e+02 Score=28.40 Aligned_cols=162 Identities=16% Similarity=0.083 Sum_probs=98.0
Q ss_pred HHHccCCHHHHHH------HHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH-------HhcCCCCcHHHHHH
Q 018582 136 LYGQTGNLSEVYR------IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW-------ESGCATYDIRVTNV 202 (353)
Q Consensus 136 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 202 (353)
.....|.+.++.+ ++......--.+....|..+...+.+.++.++|...=.+. ......-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3445566666666 4442221112234557788888888999999888765542 22222334556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC-CCcccHH
Q 018582 203 MIGAYAKEGRLENAEELKERARRR-----GA-DPNAK-TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG-KWVPSSE 274 (353)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 274 (353)
+.-.....++...|...+.+.... |. .|... +++.+-..+...++++.|.++++.+.+....--+ .-..+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666677888888887776532 22 34433 3344433344558899999999988775322111 1224567
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLE 297 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~ 297 (353)
++..+.+.+...+++..|....+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 78888888888888777665443
No 436
>PRK14700 recombination factor protein RarA; Provisional
Probab=52.42 E-value=1.4e+02 Score=24.88 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 141 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (353)
..|.+.|+-.+.+|.+.|-.|...+-..++.++-.-|
T Consensus 139 GSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 139 GTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred cCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455555555555555555555544454544444444
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.35 E-value=1.6e+02 Score=25.67 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc---------CCCCc
Q 018582 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFP--NTANISYLNMIQVLVNLKDLPGAEKCFKEWESG---------CATYD 196 (353)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 196 (353)
..+.-+...|...|+.+.|++.|.+.+.--. +-....|..+|..-.-.|+|........+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3456667777778888888888877544311 112234555666666677777766666665543 12233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
...+..+.....+ ++..|.+.|-.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 3444444443333 55555554433
No 438
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.29 E-value=1.3e+02 Score=24.67 Aligned_cols=189 Identities=15% Similarity=0.043 Sum_probs=95.5
Q ss_pred cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----c
Q 018582 34 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----A 105 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 105 (353)
.+++..+...+......+ +......+...+.. ..+...|..+|....+.| .++ ....|...|.. .
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-~~~---a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-LAE---ALFNLGLMYANGRGVP 126 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-cHH---HHHhHHHHHhcCCCcc
Confidence 445555555555554432 11222222222222 234566666776555544 221 22234444443 3
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc-----C--CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 018582 106 GLFEKAERALKELENRNAHRDLSAYQFLITLYGQT-----G--NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN---- 174 (353)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 174 (353)
.+..+|...++...+.|..+...+...+...|... - +...|...|.+.-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 36677777777776665443222233343444332 1 2236777777766665 23333444444432
Q ss_pred cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhcCCCCChhhHH
Q 018582 175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---------------RLENAEELKERARRRGADPNAKTWE 236 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------------~~~~a~~~~~~~~~~~~~p~~~~~~ 236 (353)
..+.++|...|....+.|. ....| .+. .+...| +...|...+......+.........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~-~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACY-NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHH-HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3366777777777777664 11222 222 333333 6777888888887776655555555
No 439
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=50.66 E-value=2.2e+02 Score=26.75 Aligned_cols=214 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChh-------HHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582 26 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDIS-------GAERVIEEMKRDGRVAADWTTFSNL 98 (353)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~l 98 (353)
.+|-.+.++|++++|.++....... .......+...+..+....+-. ....-|++..+ ..++...|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r---~~~~~DpyK~A 191 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIR---NSTDGDPYKRA 191 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTT---T-TTS-HHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhc---CCCCCChHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCC-----------HHHHHHHHHHHHHhCCCCChhHHHH
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN-----------LSEVYRIWRSLRLAFPNTANISYLN 167 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (353)
+-...-..+. ..-....+..+..-|--+=-.+++... .++..+.+.+.-+....+ ......
T Consensus 192 vY~ilg~cD~-------~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~ 263 (613)
T PF04097_consen 192 VYKILGRCDL-------SRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLL 263 (613)
T ss_dssp HHHHHHT--C-------CC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-------
T ss_pred HHHHHhcCCc-------cccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHHH
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc---
Q 018582 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR--- 244 (353)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--- 244 (353)
....+.-.|.++.|.+.+-. ......+..++...+..|.-.+-......=+-.....+..| .-+..||..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~--ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP--LNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC--cCHHHHHHHHHHHHh
Q ss_pred cCChHHHHHHH
Q 018582 245 NGDMKLAVDCL 255 (353)
Q Consensus 245 ~~~~~~a~~~~ 255 (353)
..++..|++++
T Consensus 340 ~td~~~Al~Y~ 350 (613)
T PF04097_consen 340 ITDPREALQYL 350 (613)
T ss_dssp TT-HHHHHHHH
T ss_pred ccCHHHHHHHH
No 440
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.62 E-value=46 Score=22.98 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
..++..+.+.+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34555555555566677777777766655555555555555555543
No 441
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.36 E-value=1.7e+02 Score=25.41 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHc--cCCHHHHHHHHHHHHHh
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLS--AYQFLITLYGQ--TGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 156 (353)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556889999999999999886 444443 45555555553 56788999999887654
No 442
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=50.13 E-value=65 Score=22.00 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=27.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 279 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
++..+...+..-.|.++++.+.+.++..+..|-...++.+.+.|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444455566677777777766665566665556666666654
No 443
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.74 E-value=84 Score=21.41 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=7.5
Q ss_pred hcCChHHHHHHHHHHHhc
Q 018582 209 KEGRLENAEELKERARRR 226 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~ 226 (353)
+.|-.+++...+.++..+
T Consensus 81 klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 81 KLGLASALESRLTRLASS 98 (116)
T ss_dssp HCT-HHHHHHHHHHHCT-
T ss_pred hhccHHHHHHHHHHHHhC
Confidence 444444444444444433
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.64 E-value=1.7e+02 Score=24.84 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=64.7
Q ss_pred cchHHHHHHHHHHCCCCCCcchHHHHHHHHHhc------CChhHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCCHH
Q 018582 37 PEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV------NDISGAERVIEEMKRDGRVAADWT-TFSNLASIYVEAGLFE 109 (353)
Q Consensus 37 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 109 (353)
.++++.++++...++. |.+......|.++-.. -+|.....+|+.+... .|+.. +.|..+ +..+..-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehHHH-HHHHhhhHH
Confidence 4567777777776653 6666666666544222 3566666777776663 34433 233222 233334466
Q ss_pred HHHHHHHHHHHccCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582 110 KAERALKELENRNAHRDLSAY-QFLITLYGQTGNLSEVYRIWRSLRLAFP 158 (353)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (353)
.++...+-+...+--.+...| ..-...+.+.|+.++|...|++....-.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 666666666554221122222 2334556677888888887777665433
No 445
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=48.51 E-value=8.7 Score=22.25 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYA 32 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 32 (353)
++.+.+|..|..+...|....||..+.-|.
T Consensus 9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 9 EELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred HHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 356677788877777777777766665443
No 446
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.39 E-value=61 Score=28.63 Aligned_cols=104 Identities=12% Similarity=-0.007 Sum_probs=62.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYT-YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 106 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (353)
+..+.+.+.++.|..++.+..+. .||... |..-..++.+.+++..|+.=+...++. .+.-...|-.=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 44455667788888888888774 465443 444446777788888887777777764 2222333333445555556
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582 107 LFEKAERALKELENRNAHRDLSAYQFLITLY 137 (353)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (353)
.+.+|+..|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 66777777766654 345554454444433
No 447
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.23 E-value=1.3e+02 Score=23.54 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=43.4
Q ss_pred HHHHHHHHHccCC-------hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 235 WEIFSDYYLRNGD-------MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 235 ~~~li~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+..+...|...|+ ...|++.|.+.......|... ..+......+.....+.|+.++|.+.|.++...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~-~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG-MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3444455555555 456777777777664221111 11234444556678899999999999999988654
No 448
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.13 E-value=76 Score=20.70 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (353)
..--.+...+...|++++|++.+-.+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333444444444444444444443
No 449
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=47.98 E-value=1.9e+02 Score=25.14 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCCCC
Q 018582 201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF------------SDYYLRNGDMKLAVDCLEKAIDTGRGDGGK 268 (353)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 268 (353)
..|...+-..|++++|..++.++. +.||.++ ++.|...+||-.|--+-+++...-..
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~---- 203 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFE---- 203 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcC----
Confidence 445566667777777777766543 2344333 34566667777776665555544321
Q ss_pred CcccH-----HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 269 WVPSS-----ETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 269 ~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.|+. .-|+.+++.....+.+=.+-+.++.+..
T Consensus 204 -~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~ 240 (439)
T KOG1498|consen 204 -KPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYD 240 (439)
T ss_pred -CccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 1332 3466666666666666666666666554
No 450
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.83 E-value=2.4e+02 Score=26.40 Aligned_cols=85 Identities=11% Similarity=0.130 Sum_probs=56.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582 67 AAVNDISGAERVIEEMKRDGRVAAD------WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT 140 (353)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (353)
.+..++..+.+.|..-... ++.| ......|--+|.+..+.|.|.+++++..+..+. ++.+--.+..+....
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHh
Confidence 3446677777777765543 3333 224466777888888999999999988876543 444444555667777
Q ss_pred CCHHHHHHHHHHHH
Q 018582 141 GNLSEVYRIWRSLR 154 (353)
Q Consensus 141 ~~~~~a~~~~~~~~ 154 (353)
|..++|+.......
T Consensus 442 ~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 442 DKSEEALTCLQKIK 455 (872)
T ss_pred cchHHHHHHHHHHH
Confidence 88888888776654
No 451
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.40 E-value=16 Score=30.54 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
.|.++.|++.|...+...+ +....|..-.+++.+.+++..|++=+....
T Consensus 127 ~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred CcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhh
Confidence 3444444444444433322 222333333344444444444444444433
No 452
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.26 E-value=99 Score=24.58 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=44.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
...+.++.+.+.+++.+....- ......|-.+...-.+.|+++.|.+.+++..+.++
T Consensus 4 ~~~~~~D~~aaaely~qal~la-------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 3456788888889998888764 12467788888888889999999999998888776
No 453
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.22 E-value=1.2e+02 Score=26.44 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCcHHHHHHHHHHH
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD--GRVAADWTTFSNLASIY 102 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~ 102 (353)
+..+.++...++++..-..|-...-. ....-.+.--|++.+.-.||.....+.++.+.+. |..+.-..| --+.-+|
T Consensus 205 ~~ql~~~~s~~dp~~va~~~g~s~~y-~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFay 282 (525)
T KOG3677|consen 205 SIQLTASVSNKDPALVALIFGASQPY-ANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAY 282 (525)
T ss_pred HHHHHHHhcCCChhhhhhhhccccHH-HhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHH
Confidence 44555666666655544333222110 0112233444667777777766656666655542 212222223 2355566
Q ss_pred HhcCCHHHHHHHHHHH
Q 018582 103 VEAGLFEKAERALKEL 118 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~ 118 (353)
.-.|++.+|.+.|-.+
T Consensus 283 Lmmrryadai~~F~ni 298 (525)
T KOG3677|consen 283 LMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777766654
No 454
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.92 E-value=1.5e+02 Score=23.79 Aligned_cols=117 Identities=10% Similarity=-0.030 Sum_probs=70.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHccCCH
Q 018582 66 LAAVNDISGAERVIEEMKRDGRVAADW-TTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-SAYQFLITLYGQTGNL 143 (353)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 143 (353)
|.....++.|...|.+.+.. .|+. .-|+.-+-++.+..+++.+..--.+..+. .|+. -....+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 44456677888888777774 4655 45567778888888888887766666553 3443 3344455666777888
Q ss_pred HHHHHHHHHHHHh----CCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582 144 SEVYRIWRSLRLA----FPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187 (353)
Q Consensus 144 ~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (353)
++|+..+.+..+. .+.+.......|..+--..=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8998888876332 2333334444444443222233334444433
No 455
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.41 E-value=2.9e+02 Score=26.92 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244 (353)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 244 (353)
+.++...+...|+.+....+-.-+. -|..++..+...+.+++|++++..-. +..++--..-. ..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~-Li 570 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPE-LI 570 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhH-HH
Confidence 3444455556666666555544433 24567777888888888888776532 11111111111 11
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc---CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE---KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
...+......|....+.. +......++..+.+. .....+.+.++-....-...++..+|.++..|++.
T Consensus 571 ~~~p~~tV~~wm~~~d~~---------~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~ 641 (911)
T KOG2034|consen 571 THSPKETVSAWMAQKDLD---------PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKH 641 (911)
T ss_pred hcCcHHHHHHHHHccccC---------chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcC
Confidence 223444444443333321 222223333333333 22334444444433333336777777777777776
Q ss_pred CC
Q 018582 322 GR 323 (353)
Q Consensus 322 g~ 323 (353)
.+
T Consensus 642 ~~ 643 (911)
T KOG2034|consen 642 ER 643 (911)
T ss_pred Cc
Confidence 65
No 456
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.40 E-value=1.7e+02 Score=24.38 Aligned_cols=76 Identities=12% Similarity=0.230 Sum_probs=41.9
Q ss_pred HHHHHHccCChHHHHHHHHH-HHHcCCCCCCCCcccHH----HHHHHHHHHHhcCChhhHHHHHH-HHHhcCCCCChhhh
Q 018582 238 FSDYYLRNGDMKLAVDCLEK-AIDTGRGDGGKWVPSSE----TIRTFMRHFEQEKDVDGAEGFLE-ILKKAVDDLGVEVF 311 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~ 311 (353)
|.+-..+...+++.....++ |.+.++ |++. .|..++.+ ..|..-.+... +.. .....|
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~nl-------Pe~eVi~ivWs~iMsa----veWnKkeelva~qal-----rhlK~y 324 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNNL-------PETEVIGIVWSGIMSA----VEWNKKEELVAEQAL-----RHLKQY 324 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcCC-------CCceEEeeeHhhhhHH----HhhchHHHHHHHHHH-----HHHHhh
Confidence 33344455566666666554 555554 5544 45555554 33333222211 111 235568
Q ss_pred HHHHHHHHHcCCChHHHH
Q 018582 312 EPLIRTYAAAGRTSPVML 329 (353)
Q Consensus 312 ~~l~~~~~~~g~~~~~~~ 329 (353)
.-|+.+++..|+....++
T Consensus 325 aPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 325 APLLAAFCSQGQSELELL 342 (412)
T ss_pred hHHHHHHhcCChHHHHHH
Confidence 889999999999666554
No 457
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.23 E-value=66 Score=22.21 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
..++..+...+..-.|.++++.+.+.++..+..|.-.-++.+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 45566666666788888888888888776777766666666666664
No 458
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.96 E-value=21 Score=21.45 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=14.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCcH
Q 018582 70 NDISGAERVIEEMKRDGRVAADW 92 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~ 92 (353)
-|++.|...|.++...|.++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 35667777777777665455543
No 459
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.64 E-value=1.4e+02 Score=23.00 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=13.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~ 190 (353)
+++..|.+.-+|.++.++++.+.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666543
No 460
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.46 E-value=1.7e+02 Score=24.82 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=10.6
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 018582 205 GAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~ 225 (353)
+-|.+..++..|...|.+-++
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk 109 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLK 109 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344455555555555555443
No 461
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.27 E-value=4.7e+02 Score=29.04 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHH
Q 018582 273 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLK 333 (353)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~ 333 (353)
..+|-...+...+.|.++.|...+-...+.++ +..+--.++.+...|+ .|..+++.-.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~---~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL---PEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc---chHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 56788888888899999999987776666654 5567778888889998 4444444443
No 462
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.86 E-value=2.2e+02 Score=25.01 Aligned_cols=91 Identities=8% Similarity=0.058 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHH
Q 018582 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR--NAHRDLSAYQFLITLYG 138 (353)
Q Consensus 61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 138 (353)
..+.++...++.+..-..|....-. ......+.-.|++...-.|+.....+.++.+... |..|....--.+.-+|.
T Consensus 206 ~ql~~~~s~~dp~~va~~~g~s~~y--~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayL 283 (525)
T KOG3677|consen 206 IQLTASVSNKDPALVALIFGASQPY--ANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYL 283 (525)
T ss_pred HHHHHHhcCCChhhhhhhhccccHH--HhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHH
Confidence 3344444555554443333322111 1122334445777777778877767777766442 22222111133445666
Q ss_pred ccCCHHHHHHHHHHH
Q 018582 139 QTGNLSEVYRIWRSL 153 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~ 153 (353)
-.|++.+|.+.|-..
T Consensus 284 mmrryadai~~F~ni 298 (525)
T KOG3677|consen 284 MMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677788888777654
No 463
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.72 E-value=1.2e+02 Score=21.99 Aligned_cols=35 Identities=3% Similarity=-0.031 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 018582 142 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (353)
..-.|.++++.+.+.++..+..|.--.+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 45555556665555555444444444444444444
No 464
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.66 E-value=42 Score=21.58 Aligned_cols=63 Identities=10% Similarity=0.252 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHH
Q 018582 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 75 (353)
Q Consensus 5 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 75 (353)
...+++.+.+.|+ .+. ...-..-+...+.+++..+++.+..+| ..+|..+..++-..|....|
T Consensus 18 ~~~v~~~L~~~~V-lt~---~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV-FTP---DMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC-CCH---HHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 4568888888876 333 333333445677889999999998876 56778888888777765544
No 465
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.40 E-value=1e+02 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=10.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcC
Q 018582 169 IQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
++.+.++...++|+++++.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333444444444444444444444
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=44.31 E-value=1.6e+02 Score=23.31 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=47.1
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---cHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 018582 52 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA---DWTTF--SNLASIYVEAGLFEKAERALKELENRNAHRD 126 (353)
Q Consensus 52 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 126 (353)
+.+...-++.|+--|.....+.+|-..|..-.. +.| +..++ ..-|......|+++.|++....+...-+..|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~---i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESG---IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccC---CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 344555555555555554445555555443222 222 22222 3355566777777777777766643333333
Q ss_pred HHHHHHHHH----HHHccCCHHHHHHHHHH
Q 018582 127 LSAYQFLIT----LYGQTGNLSEVYRIWRS 152 (353)
Q Consensus 127 ~~~~~~l~~----~~~~~~~~~~a~~~~~~ 152 (353)
...+-.|.. -..+.|..++|+++.+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222211 23455556666665553
No 467
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.29 E-value=1.9e+02 Score=27.04 Aligned_cols=85 Identities=6% Similarity=0.043 Sum_probs=58.9
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
..+..++..+.+.|..-...-+.+...... ......+-.+|.+..+.|.|.+++++..+.++ .++.+--.+..+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHh
Confidence 346678888888888766653211000000 34566777788899999999999999999887 6777777777777777
Q ss_pred CCChHHH
Q 018582 322 GRTSPVM 328 (353)
Q Consensus 322 g~~~~~~ 328 (353)
|...+++
T Consensus 442 ~~Se~AL 448 (872)
T KOG4814|consen 442 DKSEEAL 448 (872)
T ss_pred cchHHHH
Confidence 7744444
No 468
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.83 E-value=47 Score=27.95 Aligned_cols=117 Identities=13% Similarity=-0.005 Sum_probs=76.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHccCChHHH
Q 018582 173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLA 251 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a 251 (353)
...|.++.|.+.+...+... ++....|..-.+++.+.++...|++=++...+. .||. .-|-.--.+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 35678999999999888876 446667777777888889999998888877764 4443 2333333344557899999
Q ss_pred HHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582 252 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300 (353)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 300 (353)
...+....+.+ -+..+-..+=...-..+..++-...+++.+
T Consensus 202 a~dl~~a~kld--------~dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 202 AHDLALACKLD--------YDEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHhcc--------ccHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 99999999987 333333333333444444444444444433
No 469
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=2.7e+02 Score=25.63 Aligned_cols=157 Identities=11% Similarity=0.029 Sum_probs=90.4
Q ss_pred cCCHHHHHHHHHHHHHhCC--------CC---ChhHHHHHHHHHHhcCChhHHHHHHHHH-------HhcCC--------
Q 018582 140 TGNLSEVYRIWRSLRLAFP--------NT---ANISYLNMIQVLVNLKDLPGAEKCFKEW-------ESGCA-------- 193 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~--------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~-------- 193 (353)
...+++|...|........ .. ...+...+..++...|+.+.+..++.+. ....+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3445666666665544311 01 1234455566777888877766665553 22111
Q ss_pred -----CCcHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-ccCChHHHHHHHHHHHHcC-C
Q 018582 194 -----TYDIRVTNVM---IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL-RNGDMKLAVDCLEKAIDTG-R 263 (353)
Q Consensus 194 -----~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~-~ 263 (353)
.-|...|-+| +..+.+.|.+..|+++-+-+......-|+.....+|+.|+ ++.+++-.+++++.....+ +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 1244444443 3455678999999999998888765556777778888775 6678888888887775442 1
Q ss_pred CCCCCCcccHHHHHHHHHHHHhcCC---hhhHHHHHHHHH
Q 018582 264 GDGGKWVPSSETIRTFMRHFEQEKD---VDGAEGFLEILK 300 (353)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 300 (353)
. ..|+-.--.++...|.+... -+.|...+.++.
T Consensus 411 ~----~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 411 S----QLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred h----hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 1 22444333444455555444 234444444433
No 470
>PRK09857 putative transposase; Provisional
Probab=42.71 E-value=2e+02 Score=23.94 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=34.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 018582 131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD 196 (353)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (353)
..++......++.++..++++.+.+..+ .......++..-+...|..+++.++..+|...|...+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~-~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSP-KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444445555555555555544422 2233334455555555655666677777777666543
No 471
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.56 E-value=2.3e+02 Score=24.75 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---------CCCCC
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAH--RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA---------FPNTA 161 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 161 (353)
..+.-+.+.|..+|+++.|++.+.+...--.. -....|-.+|..-.-.|+|.....+..+..+. .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35667888999999999999999986542111 13445666677777788888777776665443 12222
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCC-cHHHHHHHHHHHHhcCChHHHHHH-----HHHHHhcCCC
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGC------ATY-DIRVTNVMIGAYAKEGRLENAEEL-----KERARRRGAD 229 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~li~~~~~~g~~~~a~~~-----~~~~~~~~~~ 229 (353)
...+..+...+ .+++..|.+.|-...... +.| |+.+| ..+.+..-.++-+--..+ |+...+.
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iY-ggLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIY-GGLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHH-HhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 33344443333 336666666554433211 122 33333 334444444433322222 3333332
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHH
Q 018582 230 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 281 (353)
Q Consensus 230 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (353)
.+..+..+..-| .+++...+++++++...- ..+.-+.|.+.+.-.+|+
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~l-lLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPRL-LLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccce-eechhcchhHHHHHHHHH
Confidence 233343443333 346788888888776541 111113456665555554
No 472
>COG0819 TenA Putative transcription activator [Transcription]
Probab=42.44 E-value=1.7e+02 Score=23.08 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=21.8
Q ss_pred HHHHccCCCCHHHHHHHHHHHHccCCHHHHHH
Q 018582 117 ELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 148 (353)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (353)
.+.+..+.|...+|+..+...+..|++.+...
T Consensus 99 ~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~a 130 (218)
T COG0819 99 ELLKTEPSPANKAYTRYLLDTAYSGSFAELLA 130 (218)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhcCCHHHHHH
Confidence 34445566777788888888888887665543
No 473
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.19 E-value=1.6e+02 Score=22.70 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC--------------CCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582 201 NVMIGAYAKEGRLENAEELKERARRRGA--------------DPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257 (353)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~--------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 257 (353)
-.++..|.+.-++.+..++++.|.+..+ .+--...|.....+.+.|..+.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3566778888899999999998876422 22234567778889999999999999884
No 474
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=42.06 E-value=3.6e+02 Score=26.76 Aligned_cols=70 Identities=11% Similarity=-0.039 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCCChhhhHHHHHHHHHcCC
Q 018582 248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
.+.-.+.|.++.+.- -..|..++..-...+...|++..|.+++.++.+ .+..++...|..++..+...|-
T Consensus 1212 ld~~~e~y~el~kw~------d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWL------DASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhhHHHHHHHHHHHh------hcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 344455555555542 113455555555556666777777777666655 4444666666666666666554
No 475
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.01 E-value=1.8e+02 Score=23.30 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH---HHH-HHH--ccCChHHHHHHHHHHHHcC
Q 018582 204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEI---FSD-YYL--RNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---li~-~~~--~~~~~~~a~~~~~~~~~~~ 262 (353)
...-...+++.+|+++|+++-...+..+..-|.. ++. ++| -..+.-.+...+++-.+..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 3344556788888888888776544433333321 111 112 2245545555555555554
No 476
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.88 E-value=1.1e+02 Score=20.57 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhH
Q 018582 294 GFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 343 (353)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 343 (353)
+.++++...+....+.....|.-.|++.|+.+.++.+.-.+..+.|...+
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 34444444443233444455666666666655555444445555565554
No 477
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.62 E-value=77 Score=18.94 Aligned_cols=7 Identities=43% Similarity=0.506 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 018582 215 NAEELKE 221 (353)
Q Consensus 215 ~a~~~~~ 221 (353)
+|-++++
T Consensus 17 EaHEvlE 23 (62)
T PF03745_consen 17 EAHEVLE 23 (62)
T ss_dssp HHHHHHH
T ss_pred HhHHHHH
Confidence 3333333
No 478
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=40.72 E-value=90 Score=19.43 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582 177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 210 (353)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (353)
+.+.|..++..+.... +..+..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3455666666655433 34667777777666554
No 479
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.32 E-value=1e+02 Score=20.06 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChh
Q 018582 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLP 179 (353)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 179 (353)
|...-..+...+...|++++|++.+-.+....... +...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 55566666666666777777776666665543322 3334455555555555533
No 480
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.80 E-value=1.2e+02 Score=20.53 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=7.5
Q ss_pred HHHHccCCHHHHHHHHHH
Q 018582 135 TLYGQTGNLSEVYRIWRS 152 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~ 152 (353)
..|...|+.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444443
No 481
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.77 E-value=1.2e+02 Score=20.69 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHc
Q 018582 72 ISGAERVIEEMKRD 85 (353)
Q Consensus 72 ~~~a~~~~~~~~~~ 85 (353)
.++|..+.+.+...
T Consensus 22 H~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 22 HQEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 44555555555444
No 482
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=39.37 E-value=1.4e+02 Score=21.28 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=23.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 018582 234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 264 (353)
Q Consensus 234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (353)
.+..++--+...|+++.|+++.+.++++|.+
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3444555567889999999999999998864
No 483
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.12 E-value=1.2e+02 Score=20.58 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
-|..|+..|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888899999998888776
No 484
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.54 E-value=87 Score=19.48 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=10.7
Q ss_pred cCCcchHHHHHHHHHHCCCCCCc
Q 018582 34 TGHPEKIPAIIQEMKASSIMPDS 56 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~~~p~~ 56 (353)
.++.+.+.+++++....|.+|..
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~ 36 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPED 36 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHH
Confidence 34455555555555544443333
No 485
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.53 E-value=91 Score=21.11 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 018582 97 NLASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~ 118 (353)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3445555556666666666664
No 486
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.52 E-value=57 Score=16.50 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (353)
.++.|..+|++.+... |++.+|...
T Consensus 2 E~dRAR~IyeR~v~~h--------p~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVH--------PEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhC--------CCchHHHHH
Confidence 5688999999988865 777777544
No 487
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.20 E-value=1.5e+02 Score=21.32 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=42.8
Q ss_pred CChhhHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 230 PNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 230 p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
++..+--.+..++.+.. +..+.+.+++.+.+...+ .........|.-++.+.++++.+.++.+.+.+..+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~-----~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHP-----ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCc-----ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 34445455556665544 455667777777763211 01234445555677788888888888888877665
No 488
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.63 E-value=1.5e+02 Score=20.87 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=22.1
Q ss_pred HHHHHHHHHHccCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 018582 111 AERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWR 151 (353)
Q Consensus 111 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (353)
..++|..|...++-.. ...|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666655554422 2334455555556666666666654
No 489
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.12 E-value=3.4e+02 Score=24.83 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNA-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP 158 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (353)
..++.-|.+.+++++|..++..|.=... ..--...+.+.+.+.+..--++.+..++.+...-.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ 475 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFY 475 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcc
Confidence 3577789999999999999988732110 00112334444555555545555555555554433
No 490
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.88 E-value=2.3e+02 Score=22.76 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=66.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCC-C----CCcccHHHHHHHH
Q 018582 207 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT-GRGDG-G----KWVPSSETIRTFM 280 (353)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~----~~~~~~~~~~~l~ 280 (353)
|.+..+.+-..++.+-....++.-+......++ +...||..+|+.-++.-... |.-.. . --.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334433333334444444444544444443333 45678888888777665443 11000 0 0247778888888
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582 281 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322 (353)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (353)
..|.+ +++++|.+++.++-+.|. ......+.+.+.+-...
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgy-sp~Dii~~~FRv~K~~~ 286 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGY-SPEDIITTLFRVVKNMD 286 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcc
Confidence 87765 579999999999999998 44555566666654443
No 491
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.78 E-value=2.5e+02 Score=23.05 Aligned_cols=181 Identities=17% Similarity=0.110 Sum_probs=111.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ---- 139 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 139 (353)
..+++..+...+......+ .. .....+...|.. ..+...|...+....+.|. ......|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~-~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG-DA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC-Ch---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 4566777788887777654 22 333344444443 3457889999997776553 3344446555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---
Q 018582 140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-------DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK--- 209 (353)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 209 (353)
..+..+|..+|+...+.|..+...+...+...|.... +...|...+.+....+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 4488999999999998887543233344444444431 2336888888888776 44445555555543
Q ss_pred -cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---------------ChHHHHHHHHHHHHcC
Q 018582 210 -EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG---------------DMKLAVDCLEKAIDTG 262 (353)
Q Consensus 210 -~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---------------~~~~a~~~~~~~~~~~ 262 (353)
..+.++|...|...-+.|. ......+- .+...| +...|...+......+
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 3478899999999988874 22222222 444444 5556666666666655
No 492
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=35.27 E-value=1.3e+02 Score=19.66 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=18.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 107 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (353)
.+.+.+..+++.+..+| ..+|..+..++...+.
T Consensus 48 t~~~k~~~Lld~L~~RG-----~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 48 TSFSQNVALLNLLPKRG-----PRAFSAFCEALRETSQ 80 (90)
T ss_pred CcHHHHHHHHHHHHHhC-----hhHHHHHHHHHHhcCh
Confidence 44566666666666665 2344555555544443
No 493
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.09 E-value=1.5e+02 Score=20.39 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=32.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582 279 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322 (353)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (353)
+++-+.+|...++|+++.+-|.+.|- .+...-+.|-..+.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GE-It~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKELRSILVKKG 109 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhh
Confidence 45557788899999999999999988 77766666655555543
No 494
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=35.04 E-value=1.1e+02 Score=21.04 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 018582 40 IPAIIQEM 47 (353)
Q Consensus 40 a~~~~~~m 47 (353)
+.+.+.++
T Consensus 8 ~~~~L~~L 15 (113)
T PF08870_consen 8 AKEQLKKL 15 (113)
T ss_pred HHHHHHHH
Confidence 33334333
No 495
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.33 E-value=4e+02 Score=24.74 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 84 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 84 (353)
....+..|++.+.. -+.+.-.++++++.. . + ...+..++++....|......-+.+.+..
T Consensus 309 ~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 309 AAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred hHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 33455666655443 335666666666643 1 1 55677777777777766655555555544
No 496
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.94 E-value=1.3e+02 Score=25.21 Aligned_cols=78 Identities=6% Similarity=0.155 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHH-HHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 018582 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRT-FMRHFEQEKDVDGAEGFLEILKKAVDDLGV 308 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 308 (353)
|+..|...+....+.+.+.+.-.++.+..+.. | ++..|-. --.-+...++++.++.+|......++ .++
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh--------P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~-~~p 176 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH--------PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS-RSP 176 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC-CCc
Q ss_pred hhhHHHHHH
Q 018582 309 EVFEPLIRT 317 (353)
Q Consensus 309 ~~~~~l~~~ 317 (353)
..|....+.
T Consensus 177 ~iw~eyfr~ 185 (435)
T COG5191 177 RIWIEYFRM 185 (435)
T ss_pred hHHHHHHHH
No 497
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.74 E-value=2.8e+02 Score=22.53 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=11.9
Q ss_pred HHccCChHHHHHHHHHHHHc
Q 018582 242 YLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~ 261 (353)
|...++...|...+....+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 44556666676666555544
No 498
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=31.68 E-value=2.8e+02 Score=22.54 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHH
Q 018582 24 FNSLMTLYAKTGHPEKIPAIIQEMKA 49 (353)
Q Consensus 24 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 49 (353)
.+.++..+.+.+....|.++.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 45666777777776777777666643
No 499
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.64 E-value=2.1e+02 Score=25.44 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582 177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (353)
.+++-.++++.+.+.| .+| ....-|+.|.+.+++++|...+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 3455555555555544 112 223345666666666666666655444
No 500
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=31.01 E-value=1.5e+02 Score=19.28 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (353)
.....+-.-|-+.|-.+++.+++....+.. -...+...|+.++..++--.-|..++
T Consensus 33 ~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~e--------g~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 33 PAIDNLAYEYDREGLYEQAYQLLRRFIQSE--------GKKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHhc--------cccchHHHHHHHHHHccchHHHHHHh
Confidence 344455566778888999999998887763 33478888888888888777666654
Done!