Query 018582
Match_columns 353
No_of_seqs 597 out of 1533
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 17:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.8E-35 6.1E-40 257.3 22.6 207 3-210 7-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.4E-34 4.8E-39 251.7 25.2 204 40-244 9-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 5.6E-32 1.9E-36 243.8 35.7 284 54-350 303-592 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.8E-31 1.3E-35 238.5 35.3 302 2-319 288-595 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-27 3.8E-32 204.4 40.7 326 2-343 49-374 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.1E-27 1.1E-31 201.7 39.8 326 1-343 14-340 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 7.4E-26 2.5E-30 196.9 36.2 327 6-349 12-370 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 2.2E-24 7.5E-29 187.6 36.3 300 1-317 41-372 (450)
9 3ieg_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 170.8 37.0 310 20-344 2-342 (359)
10 2gw1_A Mitochondrial precursor 99.9 1.4E-23 5E-28 185.4 32.5 329 2-344 22-485 (514)
11 3hym_B Cell division cycle pro 99.9 1.5E-22 5E-27 168.6 33.0 293 17-323 18-320 (330)
12 3ieg_A DNAJ homolog subfamily 99.9 4.6E-22 1.6E-26 167.5 35.9 304 1-320 18-352 (359)
13 3hym_B Cell division cycle pro 99.9 1.7E-21 5.7E-26 162.2 33.8 293 52-351 18-313 (330)
14 2gw1_A Mitochondrial precursor 99.9 1.4E-21 4.8E-26 172.7 31.1 291 21-326 6-390 (514)
15 3fp2_A TPR repeat-containing p 99.9 2.7E-21 9.3E-26 171.9 32.3 317 2-329 41-483 (537)
16 1fch_A Peroxisomal targeting s 99.9 1.3E-21 4.4E-26 165.5 28.1 284 31-327 35-349 (368)
17 1fch_A Peroxisomal targeting s 99.9 1.4E-21 4.8E-26 165.3 25.8 274 20-299 63-356 (368)
18 4eqf_A PEX5-related protein; a 99.9 1.9E-21 6.7E-26 164.3 25.2 274 20-298 64-352 (365)
19 4eqf_A PEX5-related protein; a 99.9 2.3E-21 7.8E-26 163.9 23.7 259 55-325 64-344 (365)
20 3cv0_A Peroxisome targeting si 99.9 2.3E-20 7.9E-25 155.0 25.4 275 20-301 20-314 (327)
21 3fp2_A TPR repeat-containing p 99.9 5.9E-20 2E-24 163.2 28.9 289 20-323 24-393 (537)
22 3cv0_A Peroxisome targeting si 99.9 3.5E-19 1.2E-23 147.9 28.3 261 55-328 20-306 (327)
23 3mkr_A Coatomer subunit epsilo 99.9 7.6E-19 2.6E-23 143.1 26.1 258 29-310 7-271 (291)
24 1b89_A Protein (clathrin heavy 99.8 9.3E-20 3.2E-24 152.1 18.0 286 2-337 19-311 (449)
25 3mkr_A Coatomer subunit epsilo 99.8 4.7E-18 1.6E-22 138.4 26.7 258 63-343 6-270 (291)
26 3spa_A Mtrpol, DNA-directed RN 99.8 2.4E-20 8.3E-25 167.9 13.1 153 89-246 124-286 (1134)
27 3spa_A Mtrpol, DNA-directed RN 99.8 1.8E-20 6.2E-25 168.7 12.2 157 126-287 126-286 (1134)
28 3uq3_A Heat shock protein STI1 99.8 1.1E-17 3.7E-22 134.0 25.4 225 58-303 7-237 (258)
29 2pl2_A Hypothetical conserved 99.8 1.8E-17 6.2E-22 129.1 21.3 199 54-259 3-212 (217)
30 2pl2_A Hypothetical conserved 99.8 4.8E-17 1.6E-21 126.8 23.1 201 18-225 2-213 (217)
31 1b89_A Protein (clathrin heavy 99.8 7.5E-19 2.6E-23 146.7 13.2 241 33-322 15-255 (449)
32 3uq3_A Heat shock protein STI1 99.8 8.4E-17 2.9E-21 128.8 24.9 240 92-351 5-256 (258)
33 2h6f_A Protein farnesyltransfe 99.8 1.6E-16 5.3E-21 133.8 27.3 250 57-321 98-366 (382)
34 3u4t_A TPR repeat-containing p 99.8 2.4E-16 8.3E-21 127.3 26.7 254 57-321 4-268 (272)
35 2xm6_A Protein corresponding t 99.8 1.4E-14 4.7E-19 127.2 39.7 288 2-320 59-411 (490)
36 2xm6_A Protein corresponding t 99.8 3.2E-14 1.1E-18 124.9 40.5 284 5-322 26-342 (490)
37 1ouv_A Conserved hypothetical 99.8 4.5E-15 1.5E-19 120.0 31.4 222 58-304 8-253 (273)
38 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-15 3.7E-20 122.0 26.8 202 56-262 37-239 (252)
39 2ooe_A Cleavage stimulation fa 99.8 1E-14 3.5E-19 129.4 35.7 319 2-335 28-454 (530)
40 2vq2_A PILW, putative fimbrial 99.8 1.3E-15 4.4E-20 119.2 26.7 203 56-262 8-212 (225)
41 2h6f_A Protein farnesyltransfe 99.8 6.9E-16 2.4E-20 129.9 26.4 248 21-284 97-364 (382)
42 2ho1_A Type 4 fimbrial biogene 99.8 1.8E-15 6E-20 120.8 27.6 210 92-312 37-247 (252)
43 3u4t_A TPR repeat-containing p 99.8 9.9E-16 3.4E-20 123.7 26.3 237 21-262 3-251 (272)
44 2vq2_A PILW, putative fimbrial 99.8 2E-15 7E-20 118.0 27.3 215 88-312 4-220 (225)
45 1ouv_A Conserved hypothetical 99.8 7.8E-15 2.7E-19 118.6 31.0 225 19-262 4-252 (273)
46 2q7f_A YRRB protein; TPR, prot 99.8 2.6E-16 8.8E-21 124.8 21.7 209 57-313 24-232 (243)
47 4g1t_A Interferon-induced prot 99.8 7.5E-15 2.6E-19 128.3 32.9 315 2-329 67-451 (472)
48 2q7f_A YRRB protein; TPR, prot 99.7 4.7E-16 1.6E-20 123.3 21.9 203 19-227 21-223 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-15 6.2E-20 122.3 25.6 225 70-304 19-246 (275)
50 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-16 6.2E-21 128.2 19.6 248 32-296 16-269 (275)
51 4g1t_A Interferon-induced prot 99.7 3.9E-14 1.3E-18 123.7 32.5 311 19-340 49-404 (472)
52 3sf4_A G-protein-signaling mod 99.7 7.7E-16 2.7E-20 131.6 20.5 301 19-323 7-362 (406)
53 2ooe_A Cleavage stimulation fa 99.7 6.7E-14 2.3E-18 124.1 33.4 314 9-341 2-424 (530)
54 4a1s_A PINS, partner of inscut 99.7 1.4E-15 4.7E-20 130.5 18.8 280 22-304 49-374 (411)
55 3ro2_A PINS homolog, G-protein 99.7 8.5E-15 2.9E-19 121.6 20.7 279 22-303 6-333 (338)
56 3vtx_A MAMA; tetratricopeptide 99.7 6.3E-14 2.2E-18 106.1 23.6 168 91-262 4-171 (184)
57 2ond_A Cleavage stimulation fa 99.7 1.6E-13 5.6E-18 112.8 26.7 220 38-262 33-271 (308)
58 2ond_A Cleavage stimulation fa 99.7 5.3E-13 1.8E-17 109.7 29.6 221 73-304 33-272 (308)
59 4a1s_A PINS, partner of inscut 99.7 1.3E-14 4.6E-19 124.3 20.2 268 58-328 50-363 (411)
60 4abn_A Tetratricopeptide repea 99.7 1.1E-14 3.6E-19 127.0 19.7 216 36-258 83-318 (474)
61 3vtx_A MAMA; tetratricopeptide 99.6 1.3E-13 4.5E-18 104.3 22.6 167 55-226 4-170 (184)
62 3ulq_A Response regulator aspa 99.6 4.3E-14 1.5E-18 120.0 21.9 291 2-302 28-368 (383)
63 1xi4_A Clathrin heavy chain; a 99.6 4.8E-13 1.7E-17 125.0 29.3 265 2-323 1065-1329(1630)
64 3sf4_A G-protein-signaling mod 99.6 6.9E-14 2.4E-18 119.5 22.5 271 54-328 7-327 (406)
65 3ro2_A PINS homolog, G-protein 99.6 3.9E-14 1.3E-18 117.6 20.1 268 58-328 7-323 (338)
66 1xi4_A Clathrin heavy chain; a 99.6 2.4E-12 8.1E-17 120.5 32.3 282 2-334 1092-1381(1630)
67 3nf1_A KLC 1, kinesin light ch 99.6 5.4E-15 1.8E-19 121.6 13.5 239 58-304 29-309 (311)
68 3nf1_A KLC 1, kinesin light ch 99.6 3.3E-15 1.1E-19 122.9 12.1 242 20-262 26-308 (311)
69 4abn_A Tetratricopeptide repea 99.6 8.5E-14 2.9E-18 121.3 21.5 207 108-328 84-312 (474)
70 1hz4_A MALT regulatory protein 99.6 5.2E-12 1.8E-16 106.7 27.7 276 24-302 17-322 (373)
71 3ulq_A Response regulator aspa 99.6 6.4E-13 2.2E-17 112.8 22.1 290 31-328 22-359 (383)
72 3e4b_A ALGK; tetratricopeptide 99.6 1E-12 3.5E-17 113.8 23.4 286 2-320 19-366 (452)
73 3q15_A PSP28, response regulat 99.6 2.5E-12 8.5E-17 108.9 24.8 291 2-301 28-364 (378)
74 4i17_A Hypothetical protein; T 99.6 2E-12 6.9E-17 101.3 22.4 209 89-316 4-222 (228)
75 4gyw_A UDP-N-acetylglucosamine 99.5 1.3E-12 4.5E-17 118.5 22.1 164 92-259 9-172 (723)
76 3as5_A MAMA; tetratricopeptide 99.5 3.2E-12 1.1E-16 96.4 20.4 130 129-261 44-173 (186)
77 3as5_A MAMA; tetratricopeptide 99.5 2.5E-12 8.6E-17 97.0 19.5 166 56-226 8-173 (186)
78 4gyw_A UDP-N-acetylglucosamine 99.5 1.9E-12 6.4E-17 117.5 21.2 161 58-223 11-171 (723)
79 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.6E-16 103.7 25.3 261 2-262 30-323 (373)
80 3e4b_A ALGK; tetratricopeptide 99.5 4.1E-11 1.4E-15 103.8 27.8 273 3-304 91-389 (452)
81 3edt_B KLC 2, kinesin light ch 99.5 2E-12 6.8E-17 104.6 18.1 210 92-302 43-281 (283)
82 3edt_B KLC 2, kinesin light ch 99.5 9.1E-13 3.1E-17 106.6 15.8 152 3-154 25-196 (283)
83 4i17_A Hypothetical protein; T 99.5 1.7E-11 5.8E-16 96.0 22.5 197 54-262 5-210 (228)
84 1qqe_A Vesicular transport pro 99.5 9.2E-12 3.1E-16 101.5 19.5 175 128-304 78-271 (292)
85 3q15_A PSP28, response regulat 99.4 1.3E-11 4.4E-16 104.5 19.8 232 26-261 106-365 (378)
86 1qqe_A Vesicular transport pro 99.4 2.3E-11 8E-16 99.0 20.6 236 3-262 2-270 (292)
87 3mv2_B Coatomer subunit epsilo 99.4 2.4E-10 8.4E-15 91.6 24.2 188 111-304 85-284 (310)
88 3mv2_B Coatomer subunit epsilo 99.4 1.7E-10 5.9E-15 92.5 23.3 147 75-225 85-239 (310)
89 3qky_A Outer membrane assembly 99.4 7.3E-11 2.5E-15 94.5 19.2 187 55-262 14-225 (261)
90 3urz_A Uncharacterized protein 99.3 1.2E-10 4.1E-15 89.8 18.1 126 133-262 60-187 (208)
91 3dra_A Protein farnesyltransfe 99.3 4.3E-09 1.5E-13 85.2 27.5 232 73-315 50-300 (306)
92 2fo7_A Synthetic consensus TPR 99.3 1.4E-10 4.8E-15 82.3 16.8 128 24-155 4-131 (136)
93 3qky_A Outer membrane assembly 99.3 3E-10 1E-14 90.9 20.3 187 19-226 13-224 (261)
94 2pzi_A Probable serine/threoni 99.3 1.1E-10 3.6E-15 106.4 19.3 173 67-247 402-583 (681)
95 2fo7_A Synthetic consensus TPR 99.3 4E-10 1.4E-14 79.8 18.2 127 96-225 5-131 (136)
96 3urz_A Uncharacterized protein 99.3 3.4E-10 1.2E-14 87.2 18.5 132 98-235 60-193 (208)
97 4ga2_A E3 SUMO-protein ligase 99.3 1.9E-11 6.6E-16 88.8 10.9 143 170-323 5-149 (150)
98 2pzi_A Probable serine/threoni 99.3 1.1E-10 3.8E-15 106.2 17.5 174 32-212 402-583 (681)
99 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.5E-09 5.3E-14 84.6 21.5 188 56-262 4-214 (225)
100 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.4E-09 4.9E-14 84.8 20.6 187 91-304 3-215 (225)
101 2r5s_A Uncharacterized protein 99.3 1.2E-10 4.1E-15 87.2 13.8 158 98-259 12-171 (176)
102 3qou_A Protein YBBN; thioredox 99.3 7.4E-10 2.5E-14 89.8 19.2 169 88-260 113-283 (287)
103 3dra_A Protein farnesyltransfe 99.3 1.6E-08 5.3E-13 82.0 26.2 223 32-261 43-287 (306)
104 4ga2_A E3 SUMO-protein ligase 99.2 1.1E-10 3.8E-15 84.8 12.0 108 69-180 10-117 (150)
105 2r5s_A Uncharacterized protein 99.2 3.8E-10 1.3E-14 84.4 15.2 161 59-224 9-171 (176)
106 3qou_A Protein YBBN; thioredox 99.2 6.6E-10 2.3E-14 90.1 17.4 168 53-225 114-283 (287)
107 3rjv_A Putative SEL1 repeat pr 99.2 4.6E-09 1.6E-13 81.0 20.0 176 111-304 5-199 (212)
108 2vsy_A XCC0866; transferase, g 99.2 8.9E-10 3E-14 98.5 18.2 154 105-262 2-158 (568)
109 2vsy_A XCC0866; transferase, g 99.2 1.4E-09 4.8E-14 97.2 18.9 153 35-192 3-158 (568)
110 2ifu_A Gamma-SNAP; membrane fu 99.2 1.1E-09 3.6E-14 89.9 16.2 230 34-294 4-253 (307)
111 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.7E-13 79.0 19.2 176 39-227 4-198 (212)
112 4e6h_A MRNA 3'-END-processing 99.1 2.3E-08 8E-13 89.9 23.8 233 5-242 328-584 (679)
113 4e6h_A MRNA 3'-END-processing 99.1 1.4E-08 4.6E-13 91.4 22.3 233 39-283 327-584 (679)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 5.6E-09 1.9E-13 85.6 16.2 225 68-323 3-247 (307)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.2E-08 4.1E-13 78.7 17.0 130 23-158 8-152 (213)
116 3q7a_A Farnesyltransferase alp 99.1 1.9E-07 6.6E-12 76.4 24.4 240 70-317 68-346 (349)
117 3u3w_A Transcriptional activat 99.1 4.6E-08 1.6E-12 79.5 20.8 165 97-261 80-266 (293)
118 3u3w_A Transcriptional activat 99.1 8.1E-08 2.8E-12 78.1 22.2 163 62-224 81-264 (293)
119 2qfc_A PLCR protein; TPR, HTH, 99.0 1.1E-07 3.7E-12 77.3 22.5 172 129-301 77-265 (293)
120 4gco_A Protein STI-1; structur 99.0 1.2E-08 4E-13 71.5 14.4 111 197-316 13-123 (126)
121 3dss_A Geranylgeranyl transfer 99.0 9.2E-07 3.1E-11 72.1 27.3 198 109-319 91-320 (331)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.8E-08 2E-12 74.8 19.6 126 96-226 10-150 (213)
123 2uy1_A Cleavage stimulation fa 99.0 1.7E-06 5.7E-11 75.5 30.5 303 2-332 30-410 (493)
124 3q7a_A Farnesyltransferase alp 99.0 5.6E-07 1.9E-11 73.7 24.9 226 29-261 62-331 (349)
125 1na0_A Designed protein CTPR3; 99.0 3.3E-08 1.1E-12 68.7 15.7 116 197-321 9-124 (125)
126 4gco_A Protein STI-1; structur 99.0 2.8E-08 9.5E-13 69.6 14.4 95 95-191 16-110 (126)
127 2lni_A Stress-induced-phosphop 99.0 4E-08 1.4E-12 69.2 15.2 119 195-322 14-132 (133)
128 1a17_A Serine/threonine protei 99.0 8.3E-08 2.8E-12 70.5 17.3 95 95-191 16-110 (166)
129 2qfc_A PLCR protein; TPR, HTH, 99.0 1.3E-07 4.5E-12 76.8 19.8 170 92-261 75-266 (293)
130 3gyz_A Chaperone protein IPGC; 99.0 1.6E-08 5.4E-13 73.1 12.7 94 95-190 39-132 (151)
131 2c2l_A CHIP, carboxy terminus 99.0 7.8E-09 2.7E-13 83.5 11.9 98 20-120 3-100 (281)
132 1a17_A Serine/threonine protei 98.9 1E-07 3.5E-12 70.0 16.8 127 58-188 15-143 (166)
133 1na0_A Designed protein CTPR3; 98.9 1.2E-07 4.2E-12 65.7 16.3 92 96-189 13-104 (125)
134 3gyz_A Chaperone protein IPGC; 98.9 1.8E-08 6.1E-13 72.8 12.1 124 23-158 11-135 (151)
135 2vyi_A SGTA protein; chaperone 98.9 8.8E-08 3E-12 67.1 15.5 119 196-323 11-129 (131)
136 1p5q_A FKBP52, FK506-binding p 98.9 4.7E-09 1.6E-13 87.1 10.1 151 70-224 127-292 (336)
137 2vyi_A SGTA protein; chaperone 98.9 7.6E-08 2.6E-12 67.4 15.0 115 94-211 14-128 (131)
138 2lni_A Stress-induced-phosphop 98.9 1E-07 3.5E-12 67.1 15.3 96 93-190 17-112 (133)
139 3gw4_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 75.2 13.7 84 68-153 4-92 (203)
140 2c2l_A CHIP, carboxy terminus 98.9 1E-08 3.4E-13 82.9 10.9 95 93-189 5-99 (281)
141 2e2e_A Formate-dependent nitri 98.9 2.8E-08 9.6E-13 74.2 12.6 123 32-158 21-146 (177)
142 2e2e_A Formate-dependent nitri 98.9 4.2E-08 1.4E-12 73.2 13.5 120 68-191 22-144 (177)
143 2vgx_A Chaperone SYCD; alterna 98.9 2.6E-08 8.8E-13 72.0 11.9 101 196-304 20-120 (148)
144 3gw4_A Uncharacterized protein 98.9 3.9E-08 1.3E-12 75.0 13.4 158 103-261 3-176 (203)
145 2vgx_A Chaperone SYCD; alterna 98.9 5E-08 1.7E-12 70.4 12.7 97 92-190 21-117 (148)
146 2uy1_A Cleavage stimulation fa 98.9 1.8E-06 6E-11 75.4 24.2 84 35-120 28-117 (493)
147 4f3v_A ESX-1 secretion system 98.9 5.6E-08 1.9E-12 77.0 13.3 126 134-262 109-238 (282)
148 4f3v_A ESX-1 secretion system 98.8 2.1E-07 7.2E-12 73.7 16.1 198 104-315 18-248 (282)
149 3dss_A Geranylgeranyl transfer 98.8 1.2E-05 4E-10 65.7 26.5 231 22-262 27-305 (331)
150 3upv_A Heat shock protein STI1 98.8 1.9E-07 6.4E-12 65.3 14.2 112 197-317 4-121 (126)
151 1p5q_A FKBP52, FK506-binding p 98.8 9.4E-08 3.2E-12 79.2 14.2 151 34-189 126-292 (336)
152 2fbn_A 70 kDa peptidylprolyl i 98.8 2.1E-08 7.2E-13 76.4 9.4 88 128-217 89-176 (198)
153 3upv_A Heat shock protein STI1 98.8 4.2E-07 1.4E-11 63.4 15.1 88 98-187 10-97 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.8 4E-07 1.4E-11 62.4 14.7 111 197-316 4-114 (118)
155 2fbn_A 70 kDa peptidylprolyl i 98.8 2.5E-08 8.6E-13 76.0 8.4 159 101-262 13-187 (198)
156 1elw_A TPR1-domain of HOP; HOP 98.8 1E-06 3.5E-11 60.2 16.0 93 96-190 8-100 (118)
157 2xcb_A PCRH, regulatory protei 98.8 1.1E-07 3.9E-12 68.0 11.1 93 95-189 21-113 (142)
158 2xcb_A PCRH, regulatory protei 98.8 4E-07 1.4E-11 65.1 14.0 99 198-304 19-117 (142)
159 4gcn_A Protein STI-1; structur 98.7 2.8E-07 9.7E-12 64.5 12.7 98 164-262 10-113 (127)
160 3sz7_A HSC70 cochaperone (SGT) 98.7 4.3E-07 1.5E-11 66.7 14.3 100 197-304 11-110 (164)
161 4b4t_Q 26S proteasome regulato 98.7 1E-06 3.6E-11 75.7 18.2 168 130-301 58-244 (434)
162 2dba_A Smooth muscle cell asso 98.7 8.1E-07 2.8E-11 63.7 14.5 112 196-317 27-142 (148)
163 3sz7_A HSC70 cochaperone (SGT) 98.7 8.3E-07 2.8E-11 65.2 14.4 96 58-156 13-108 (164)
164 2kck_A TPR repeat; tetratricop 98.7 2.2E-07 7.5E-12 63.1 10.4 100 56-157 6-107 (112)
165 4gcn_A Protein STI-1; structur 98.7 5.1E-07 1.7E-11 63.2 12.2 58 60-119 12-69 (127)
166 3q49_B STIP1 homology and U bo 98.7 1.1E-06 3.9E-11 62.1 14.0 100 196-303 8-107 (137)
167 2kck_A TPR repeat; tetratricop 98.7 8.1E-07 2.8E-11 60.2 12.7 97 94-191 8-106 (112)
168 4b4t_Q 26S proteasome regulato 98.7 5.3E-06 1.8E-10 71.3 20.5 196 29-224 12-243 (434)
169 2dba_A Smooth muscle cell asso 98.6 1.3E-06 4.5E-11 62.6 14.2 95 58-156 30-128 (148)
170 3q49_B STIP1 homology and U bo 98.6 1.3E-06 4.3E-11 61.9 13.9 93 58-153 11-103 (137)
171 1elr_A TPR2A-domain of HOP; HO 98.6 5.9E-07 2E-11 62.8 12.0 98 164-262 6-109 (131)
172 1hxi_A PEX5, peroxisome target 98.6 6.8E-07 2.3E-11 61.9 11.5 94 59-155 20-113 (121)
173 1elr_A TPR2A-domain of HOP; HO 98.6 1.1E-06 3.7E-11 61.4 12.6 96 59-156 7-108 (131)
174 2xev_A YBGF; tetratricopeptide 98.6 3.6E-06 1.2E-10 58.7 14.7 100 202-311 7-113 (129)
175 1hxi_A PEX5, peroxisome target 98.5 1E-06 3.6E-11 60.9 10.8 92 168-261 23-114 (121)
176 1wao_1 Serine/threonine protei 98.5 1.6E-06 5.5E-11 75.4 14.2 120 99-221 13-134 (477)
177 3ro3_A PINS homolog, G-protein 98.5 1.8E-06 6.1E-11 62.8 12.6 130 94-223 11-155 (164)
178 1wao_1 Serine/threonine protei 98.5 1.7E-06 6E-11 75.2 14.0 115 68-186 18-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.5 1.3E-05 4.4E-10 55.9 15.8 92 63-156 9-105 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 5E-06 1.7E-10 72.0 15.8 143 71-217 249-405 (457)
181 3ro3_A PINS homolog, G-protein 98.5 1.9E-06 6.6E-11 62.6 11.1 135 127-261 9-158 (164)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.9E-06 1E-10 73.4 13.9 122 196-325 267-402 (457)
183 1dce_A Protein (RAB geranylger 98.5 2.1E-05 7.3E-10 69.7 19.2 170 143-323 45-241 (567)
184 3rkv_A Putative peptidylprolyl 98.4 8.4E-06 2.9E-10 59.5 13.5 66 196-262 62-127 (162)
185 3rkv_A Putative peptidylprolyl 98.4 5.7E-06 2E-10 60.5 12.5 110 199-316 13-140 (162)
186 3k9i_A BH0479 protein; putativ 98.4 1.1E-06 3.7E-11 60.5 8.0 86 34-121 3-90 (117)
187 1dce_A Protein (RAB geranylger 98.4 5E-05 1.7E-09 67.4 20.5 174 71-250 44-244 (567)
188 3k9i_A BH0479 protein; putativ 98.4 1.8E-06 6.3E-11 59.3 8.4 87 175-262 3-91 (117)
189 1ihg_A Cyclophilin 40; ppiase 98.4 8.1E-06 2.8E-10 68.5 13.8 86 164-251 275-360 (370)
190 1ihg_A Cyclophilin 40; ppiase 98.4 8.7E-06 3E-10 68.3 13.6 136 59-217 226-361 (370)
191 2if4_A ATFKBP42; FKBP-like, al 98.3 1.8E-06 6.1E-11 71.6 8.3 97 94-192 232-329 (338)
192 2hr2_A Hypothetical protein; a 98.3 9.4E-06 3.2E-10 58.2 10.7 98 199-304 13-133 (159)
193 2hr2_A Hypothetical protein; a 98.3 3E-05 1E-09 55.5 12.6 27 130-156 14-40 (159)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 6.4E-06 2.2E-10 68.3 10.5 149 93-262 180-329 (338)
195 1na3_A Designed protein CTPR2; 98.1 3.6E-05 1.2E-09 49.6 10.4 84 231-322 8-91 (91)
196 2kat_A Uncharacterized protein 98.1 2.5E-05 8.6E-10 53.2 9.9 77 75-154 4-80 (115)
197 1klx_A Cysteine rich protein B 98.1 0.00011 3.6E-09 52.0 12.8 110 142-262 10-127 (138)
198 2kat_A Uncharacterized protein 98.1 4.3E-05 1.5E-09 52.0 10.5 81 38-121 2-82 (115)
199 1klx_A Cysteine rich protein B 98.1 0.00016 5.5E-09 51.0 13.6 112 176-304 9-128 (138)
200 3n71_A Histone lysine methyltr 98.1 1.6E-05 5.6E-10 68.8 9.8 132 171-302 318-464 (490)
201 2l6j_A TPR repeat-containing p 98.0 4.2E-05 1.5E-09 51.5 9.5 93 196-297 3-102 (111)
202 3n71_A Histone lysine methyltr 98.0 5.4E-05 1.9E-09 65.6 11.9 97 164-260 353-463 (490)
203 2l6j_A TPR repeat-containing p 98.0 6.5E-05 2.2E-09 50.5 10.2 86 231-324 3-94 (111)
204 1na3_A Designed protein CTPR2; 98.0 0.00011 3.9E-09 47.2 10.3 62 94-156 11-72 (91)
205 1zu2_A Mitochondrial import re 97.9 4.2E-05 1.4E-09 54.7 8.0 97 176-282 16-133 (158)
206 1zu2_A Mitochondrial import re 97.9 4.9E-05 1.7E-09 54.4 8.3 97 68-169 14-131 (158)
207 3ma5_A Tetratricopeptide repea 97.9 0.00014 4.9E-09 48.0 9.3 64 90-154 5-68 (100)
208 3ma5_A Tetratricopeptide repea 97.8 5.5E-05 1.9E-09 50.1 6.7 64 20-84 6-69 (100)
209 3ly7_A Transcriptional activat 97.6 0.0038 1.3E-07 51.3 15.4 74 194-277 274-347 (372)
210 3ly7_A Transcriptional activat 97.5 0.007 2.4E-07 49.8 15.5 64 161-226 276-339 (372)
211 3qwp_A SET and MYND domain-con 97.4 0.0012 4E-08 56.4 10.4 99 203-301 293-399 (429)
212 3qww_A SET and MYND domain-con 97.4 0.00043 1.5E-08 59.0 7.7 93 209-301 310-410 (433)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00045 1.5E-08 45.3 6.4 57 64-122 8-65 (99)
214 2kc7_A BFR218_protein; tetratr 97.3 0.0024 8.1E-08 41.7 9.5 65 238-311 6-72 (99)
215 3bee_A Putative YFRE protein; 97.2 0.01 3.4E-07 38.3 10.8 68 89-157 3-73 (93)
216 3qww_A SET and MYND domain-con 97.2 0.0032 1.1E-07 53.7 10.6 63 198-260 341-410 (433)
217 3bee_A Putative YFRE protein; 97.2 0.0092 3.1E-07 38.5 10.5 66 231-304 5-74 (93)
218 2v5f_A Prolyl 4-hydroxylase su 97.1 0.005 1.7E-07 40.8 9.4 83 231-314 4-86 (104)
219 1pc2_A Mitochondria fission pr 97.0 0.015 5.1E-07 41.1 11.2 87 214-309 15-106 (152)
220 3qwp_A SET and MYND domain-con 97.0 0.0039 1.3E-07 53.1 10.0 86 104-189 299-398 (429)
221 3mkq_A Coatomer beta'-subunit; 96.9 0.03 1E-06 52.1 16.0 75 96-188 633-707 (814)
222 3mkq_A Coatomer beta'-subunit; 96.9 0.013 4.5E-07 54.5 13.3 155 99-298 606-761 (814)
223 1wy6_A Hypothetical protein ST 96.7 0.073 2.5E-06 36.5 15.3 135 104-263 19-156 (172)
224 4h7y_A Dual specificity protei 96.7 0.036 1.2E-06 38.8 10.6 112 126-240 12-136 (161)
225 1pc2_A Mitochondria fission pr 96.7 0.022 7.4E-07 40.3 9.7 81 180-262 16-101 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.6 0.037 1.3E-06 36.4 10.3 28 93-120 47-74 (104)
227 3u64_A Protein TP_0956; tetrat 96.6 0.036 1.2E-06 43.8 11.4 85 72-159 179-272 (301)
228 3lvg_A Clathrin heavy chain 1; 96.6 9.3E-06 3.2E-10 68.1 -9.1 251 20-293 53-324 (624)
229 3u64_A Protein TP_0956; tetrat 96.5 0.048 1.7E-06 43.1 11.2 92 213-314 179-283 (301)
230 4h7y_A Dual specificity protei 96.4 0.13 4.5E-06 36.0 11.9 104 19-125 11-127 (161)
231 3mkq_B Coatomer subunit alpha; 96.4 0.061 2.1E-06 39.0 10.5 101 65-187 14-114 (177)
232 3mkq_B Coatomer subunit alpha; 96.1 0.24 8E-06 36.0 13.4 104 98-222 11-114 (177)
233 1nzn_A CGI-135 protein, fissio 96.1 0.15 5E-06 34.7 10.7 90 212-310 16-110 (126)
234 3lvg_A Clathrin heavy chain 1; 95.6 7.5E-06 2.5E-10 68.7 -14.2 240 55-329 53-312 (624)
235 1nzn_A CGI-135 protein, fissio 95.5 0.18 6.2E-06 34.2 9.3 20 171-190 83-102 (126)
236 4ady_A RPN2, 26S proteasome re 95.4 1.7 6E-05 40.6 21.2 248 66-324 384-644 (963)
237 4ady_A RPN2, 26S proteasome re 95.3 1.9 6.6E-05 40.4 18.3 156 99-261 497-658 (963)
238 1wy6_A Hypothetical protein ST 95.3 0.43 1.5E-05 32.8 13.7 140 137-304 17-156 (172)
239 4gns_B Protein CSD3, chitin bi 95.1 0.23 7.8E-06 45.3 11.5 126 201-329 252-392 (754)
240 4gns_B Protein CSD3, chitin bi 95.1 0.51 1.7E-05 43.1 13.6 128 165-300 251-398 (754)
241 4b4t_P 26S proteasome regulato 94.4 2.1 7.3E-05 36.6 17.9 99 199-301 139-246 (445)
242 2ff4_A Probable regulatory pro 94.2 0.47 1.6E-05 39.8 10.6 70 130-200 174-248 (388)
243 1v54_E Cytochrome C oxidase po 93.9 0.76 2.6E-05 29.6 9.2 64 247-317 25-88 (109)
244 4b4t_P 26S proteasome regulato 93.8 2.8 9.6E-05 35.8 22.0 153 166-323 141-308 (445)
245 2ff4_A Probable regulatory pro 93.6 2.3 7.8E-05 35.6 13.7 70 95-165 174-248 (388)
246 1v54_E Cytochrome C oxidase po 93.1 1.1 3.8E-05 28.8 9.3 62 178-240 26-87 (109)
247 4fhn_B Nucleoporin NUP120; pro 92.9 7.4 0.00025 37.9 18.6 189 133-334 818-1049(1139)
248 4fhn_B Nucleoporin NUP120; pro 92.7 8 0.00027 37.7 19.2 191 61-260 817-1049(1139)
249 2y69_E Cytochrome C oxidase su 92.5 1.7 6E-05 29.6 9.2 63 248-317 69-131 (152)
250 2y69_E Cytochrome C oxidase su 91.8 2.1 7.3E-05 29.2 9.3 60 180-240 71-130 (152)
251 3ffl_A Anaphase-promoting comp 91.7 1.8 6E-05 31.0 8.8 31 272-302 121-151 (167)
252 3o48_A Mitochondria fission 1 91.6 2.3 7.8E-05 29.1 10.6 71 229-308 37-112 (134)
253 4b4t_R RPN7, 26S proteasome re 91.0 4.4 0.00015 34.4 12.5 61 58-118 133-194 (429)
254 4b4t_R RPN7, 26S proteasome re 90.4 4.7 0.00016 34.3 12.1 99 93-191 132-237 (429)
255 3ffl_A Anaphase-promoting comp 90.1 2.4 8.2E-05 30.3 8.3 63 22-84 21-91 (167)
256 2wpv_A GET4, UPF0363 protein Y 89.7 6.9 0.00024 31.5 13.5 118 164-296 35-157 (312)
257 3o48_A Mitochondria fission 1 89.6 3.6 0.00012 28.1 10.1 22 204-225 85-106 (134)
258 1y8m_A FIS1; mitochondria, unk 88.4 4.7 0.00016 27.9 11.7 68 229-304 36-108 (144)
259 1zbp_A Hypothetical protein VP 88.2 2.7 9.2E-05 32.8 8.0 52 67-120 8-59 (273)
260 3txn_A 26S proteasome regulato 84.9 16 0.00055 30.5 20.6 234 22-258 20-281 (394)
261 1qsa_A Protein (soluble lytic 84.6 22 0.00075 31.8 22.8 248 60-333 76-346 (618)
262 2wpv_A GET4, UPF0363 protein Y 84.4 14 0.00049 29.6 20.9 113 94-221 35-158 (312)
263 3lpz_A GET4 (YOR164C homolog); 82.9 18 0.0006 29.4 24.8 24 196-219 135-158 (336)
264 3esl_A Checkpoint serine/threo 82.5 11 0.00038 27.9 8.6 54 72-125 95-148 (202)
265 1y8m_A FIS1; mitochondria, unk 82.1 10 0.00035 26.3 12.2 66 90-155 37-105 (144)
266 3txn_A 26S proteasome regulato 80.9 24 0.00081 29.5 20.5 130 58-188 21-165 (394)
267 1zbp_A Hypothetical protein VP 79.8 20 0.00068 28.0 13.2 121 170-304 5-131 (273)
268 3esl_A Checkpoint serine/threo 79.7 16 0.00056 27.0 9.8 52 248-304 95-146 (202)
269 2uwj_G Type III export protein 79.6 9.8 0.00034 24.4 7.2 18 209-226 80-97 (115)
270 2p58_C Putative type III secre 78.9 10 0.00036 24.3 8.1 49 172-226 50-98 (116)
271 4b4t_S RPN3, 26S proteasome re 76.3 26 0.00087 30.5 10.1 62 21-85 231-299 (523)
272 1wdy_A 2-5A-dependent ribonucl 72.7 16 0.00053 28.3 7.9 20 244-263 191-210 (285)
273 3eu9_A Huntingtin-interacting 72.6 12 0.00042 28.0 7.1 46 31-80 16-63 (240)
274 2uwj_G Type III export protein 72.6 16 0.00056 23.4 8.5 51 136-192 48-98 (115)
275 1k1a_A B-cell lymphoma 3-encod 72.3 25 0.00085 26.4 8.8 46 29-74 14-61 (241)
276 2p58_C Putative type III secre 71.6 17 0.0006 23.4 9.3 51 136-192 49-99 (116)
277 3kea_A K1L; tropism, ANK repea 71.1 29 0.001 27.2 9.1 185 28-234 35-225 (285)
278 3eiq_C Programmed cell death p 69.2 47 0.0016 27.3 10.7 64 165-229 220-285 (358)
279 1wdy_A 2-5A-dependent ribonucl 68.4 14 0.00049 28.6 6.8 207 26-254 7-238 (285)
280 2wvi_A Mitotic checkpoint seri 68.0 30 0.001 24.7 7.9 50 111-160 79-129 (164)
281 4a1g_A Mitotic checkpoint seri 67.3 30 0.001 24.3 9.2 49 251-304 84-132 (152)
282 2xig_A Ferric uptake regulatio 66.0 28 0.00097 24.3 7.1 38 68-106 38-75 (150)
283 3lpz_A GET4 (YOR164C homolog); 65.2 54 0.0019 26.6 21.5 167 23-224 37-214 (336)
284 2d2s_A Exocyst complex compone 63.7 47 0.0016 25.4 9.9 29 196-224 90-118 (235)
285 3eu9_A Huntingtin-interacting 63.3 9.5 0.00033 28.7 4.6 69 6-78 22-95 (240)
286 1mzb_A Ferric uptake regulatio 62.9 30 0.001 23.6 6.7 57 119-176 10-67 (136)
287 2fe3_A Peroxide operon regulat 62.5 36 0.0012 23.6 7.4 37 139-175 33-69 (145)
288 4ets_A Ferric uptake regulatio 61.7 33 0.0011 24.3 6.9 58 119-177 25-84 (162)
289 1ug3_A EIF4GI, eukaryotic prot 60.7 23 0.0008 28.8 6.6 25 95-119 14-38 (339)
290 2fe3_A Peroxide operon regulat 60.3 39 0.0013 23.3 7.6 58 12-70 13-70 (145)
291 2xig_A Ferric uptake regulatio 60.1 41 0.0014 23.5 7.9 46 131-176 30-75 (150)
292 4aez_C MAD3, mitotic spindle c 59.7 27 0.00091 26.4 6.1 62 249-319 131-192 (223)
293 3ygs_P Procaspase 9; apoptosis 59.2 15 0.0005 23.5 4.2 66 7-78 25-90 (97)
294 3e3v_A Regulatory protein RECX 59.2 48 0.0016 24.0 8.6 46 216-262 52-97 (177)
295 2w57_A Ferric uptake regulatio 59.2 34 0.0012 23.9 6.5 58 118-176 8-66 (150)
296 3kea_A K1L; tropism, ANK repea 59.0 45 0.0016 26.0 8.0 175 7-199 45-225 (285)
297 2d2s_A Exocyst complex compone 58.7 59 0.002 24.8 9.8 89 62-153 24-117 (235)
298 2ion_A PDCD4, programmed cell 58.6 44 0.0015 23.4 7.6 24 96-119 13-36 (152)
299 3eyy_A Putative iron uptake re 58.1 39 0.0014 23.4 6.6 58 11-70 9-66 (145)
300 1mzb_A Ferric uptake regulatio 58.1 41 0.0014 22.9 7.1 59 12-71 9-68 (136)
301 2wvi_A Mitotic checkpoint seri 58.1 48 0.0016 23.6 9.1 49 251-304 79-127 (164)
302 2w57_A Ferric uptake regulatio 57.5 44 0.0015 23.3 6.8 60 11-71 7-67 (150)
303 4gq2_M Nucleoporin NUP120; bet 57.1 1.4E+02 0.0047 28.6 12.0 114 203-322 816-950 (950)
304 3eyy_A Putative iron uptake re 56.1 27 0.00092 24.2 5.5 21 144-164 34-54 (145)
305 2ijq_A Hypothetical protein; s 54.5 55 0.0019 23.2 7.9 51 105-155 45-103 (161)
306 2nsz_A Programmed cell death p 54.4 47 0.0016 22.4 7.7 22 167-188 12-33 (129)
307 3jxi_A Vanilloid receptor-rela 54.3 15 0.00053 28.1 4.5 56 28-83 9-73 (260)
308 4aez_C MAD3, mitotic spindle c 53.7 52 0.0018 24.8 6.8 54 109-162 131-185 (223)
309 2nsz_A Programmed cell death p 53.4 49 0.0017 22.4 9.0 62 96-158 11-74 (129)
310 2f6m_A Suppressor protein STP2 52.9 30 0.001 20.1 4.2 54 275-329 4-57 (65)
311 2b7e_A PRE-mRNA processing pro 51.4 23 0.00078 20.1 3.5 29 38-66 3-31 (59)
312 4ets_A Ferric uptake regulatio 50.9 55 0.0019 23.2 6.5 59 48-108 25-85 (162)
313 1k1a_A B-cell lymphoma 3-encod 49.3 78 0.0027 23.5 7.9 28 98-125 12-39 (241)
314 2ion_A PDCD4, programmed cell 49.2 63 0.0021 22.6 6.4 69 274-343 10-82 (152)
315 3ltm_A Alpha-REP4; protein eng 48.7 76 0.0026 23.2 19.4 93 160-261 93-185 (211)
316 2ijq_A Hypothetical protein; s 48.3 71 0.0024 22.7 7.9 53 209-261 44-104 (161)
317 3jxi_A Vanilloid receptor-rela 48.1 23 0.0008 27.0 4.6 23 280-302 229-251 (260)
318 3hra_A Ankyrin repeat family p 47.8 63 0.0021 23.2 6.8 37 181-217 157-195 (201)
319 3eiq_C Programmed cell death p 47.6 1.2E+02 0.004 25.0 10.8 72 274-346 218-293 (358)
320 2keb_A DNA polymerase subunit 45.9 56 0.0019 20.8 5.8 33 39-71 27-59 (101)
321 3ljn_A Hypothetical protein; a 45.4 1.2E+02 0.004 24.5 8.7 217 20-257 17-266 (364)
322 1oai_A Nuclear RNA export fact 45.2 15 0.0005 21.0 2.1 22 70-91 34-55 (59)
323 1n11_A Ankyrin; clathrin, BAND 45.1 32 0.0011 28.9 5.3 14 328-341 326-339 (437)
324 1wgl_A TOLL-interacting protei 43.5 28 0.00094 19.8 3.1 17 68-84 35-51 (59)
325 3hra_A Ankyrin repeat family p 43.4 32 0.0011 24.8 4.6 17 216-232 157-173 (201)
326 3aji_A 26S proteasome non-ATPa 43.3 71 0.0024 23.6 6.6 20 98-117 9-28 (231)
327 1n11_A Ankyrin; clathrin, BAND 43.3 79 0.0027 26.4 7.5 70 6-79 27-100 (437)
328 3lxu_X Tripeptidyl-peptidase 2 43.2 2E+02 0.0067 28.7 10.5 47 244-299 1296-1342(1354)
329 2o03_A Probable zinc uptake re 42.9 55 0.0019 22.0 5.3 46 26-71 15-60 (131)
330 3ygs_P Procaspase 9; apoptosis 42.8 53 0.0018 20.8 4.8 35 107-145 52-86 (97)
331 3mwm_A ZUR, putative metal upt 42.3 51 0.0018 22.6 5.1 47 25-71 17-63 (139)
332 3mwm_A ZUR, putative metal upt 42.1 53 0.0018 22.5 5.1 47 277-323 17-63 (139)
333 2o03_A Probable zinc uptake re 42.1 56 0.0019 22.0 5.2 46 278-323 15-60 (131)
334 2fu4_A Ferric uptake regulatio 41.4 57 0.0019 19.6 6.9 60 11-71 7-67 (83)
335 4gq2_M Nucleoporin NUP120; bet 40.5 1.7E+02 0.0059 27.9 9.8 49 198-246 898-950 (950)
336 3b7b_A Euchromatic histone-lys 40.4 33 0.0011 25.6 4.3 207 28-260 15-235 (237)
337 2p1h_A APAF-1, apoptotic prote 39.6 68 0.0023 20.0 5.0 63 40-111 24-86 (94)
338 2yru_A Steroid receptor RNA ac 38.3 50 0.0017 22.0 4.2 41 44-84 49-89 (118)
339 3i5p_A Nucleoporin NUP170; hel 37.1 1.8E+02 0.0061 25.4 8.6 30 164-193 219-248 (525)
340 2rfa_A Transient receptor pote 36.1 1E+02 0.0036 22.7 6.6 54 204-258 158-220 (232)
341 3pvs_A Replication-associated 35.5 2.1E+02 0.0071 24.4 13.0 84 103-186 266-354 (447)
342 4b4t_S RPN3, 26S proteasome re 35.4 2.3E+02 0.0077 24.8 12.6 65 91-157 230-300 (523)
343 2r9g_A AAA ATPase, central reg 35.4 1.3E+02 0.0046 22.2 11.6 38 103-141 25-62 (204)
344 3ltj_A Alpharep-4; protein eng 34.8 1.3E+02 0.0043 21.7 20.3 93 160-261 88-180 (201)
345 3ljn_A Hypothetical protein; a 34.7 1.5E+02 0.0051 23.9 7.7 196 6-222 33-266 (364)
346 1ug3_A EIF4GI, eukaryotic prot 34.7 1.8E+02 0.0062 23.5 10.0 25 24-48 14-38 (339)
347 2p22_A Suppressor protein STP2 33.6 44 0.0015 24.0 3.6 61 269-330 107-167 (174)
348 4fke_A Aminopeptidase N; zinc 32.9 3.2E+02 0.011 25.9 17.1 161 96-262 690-861 (909)
349 3pvs_A Replication-associated 32.7 2.3E+02 0.0079 24.1 13.9 29 90-120 192-220 (447)
350 4a1g_A Mitotic checkpoint seri 32.5 1.3E+02 0.0044 21.1 12.8 52 110-161 83-135 (152)
351 4fke_A Aminopeptidase N; zinc 31.8 3.4E+02 0.012 25.7 16.9 159 61-226 691-860 (909)
352 4g8k_A 2-5A-dependent ribonucl 31.3 1.1E+02 0.0037 24.4 6.2 44 208-262 281-324 (337)
353 1ya0_A SMG-7 transcript varian 31.2 2.6E+02 0.0089 24.2 8.8 56 280-336 159-214 (497)
354 1wty_A Hypothetical protein TT 30.6 1.2E+02 0.004 20.0 7.0 76 178-260 4-80 (119)
355 3d5l_A Regulatory protein RECX 30.2 1.7E+02 0.0059 21.9 11.3 110 214-332 93-203 (221)
356 3t8k_A Uncharacterized protein 29.8 1.5E+02 0.0053 21.2 8.6 50 214-263 91-145 (186)
357 3c1d_A Protein ORAA, regulator 29.6 1.5E+02 0.005 20.8 11.0 47 214-262 47-93 (159)
358 3ltj_A Alpharep-4; protein eng 29.4 1.6E+02 0.0054 21.1 20.6 138 161-320 58-195 (201)
359 3t8k_A Uncharacterized protein 29.0 1.6E+02 0.0054 21.1 8.3 28 98-125 41-68 (186)
360 3ltm_A Alpha-REP4; protein eng 28.9 1.7E+02 0.0057 21.2 19.5 140 160-321 62-201 (211)
361 3bge_A Predicted ATPase; struc 27.6 1.9E+02 0.0064 21.4 9.4 36 104-139 19-54 (201)
362 2zu6_B Programmed cell death p 27.5 2.4E+02 0.0081 22.6 8.4 22 132-153 171-192 (307)
363 3t5v_B Nuclear mRNA export pro 26.6 1.9E+02 0.0064 24.8 6.8 29 165-193 179-207 (455)
364 2r9g_A AAA ATPase, central reg 25.4 2.1E+02 0.0071 21.2 9.6 55 138-193 25-84 (204)
365 3bge_A Predicted ATPase; struc 25.2 2.1E+02 0.0071 21.1 9.5 34 68-102 19-52 (201)
366 3bqo_A Telomeric repeat-bindin 25.1 60 0.0021 23.9 3.0 23 239-261 124-146 (211)
367 3t5v_B Nuclear mRNA export pro 25.1 1.8E+02 0.0062 24.9 6.5 29 24-52 179-207 (455)
368 3e3v_A Regulatory protein RECX 25.0 1.9E+02 0.0066 20.7 9.9 12 113-124 54-65 (177)
369 3ctd_A Putative ATPase, AAA fa 23.3 2.4E+02 0.008 21.1 10.8 38 104-141 47-84 (213)
370 1bpo_A Protein (clathrin); cla 23.2 3.6E+02 0.012 23.2 10.7 84 69-157 342-425 (494)
371 2zu6_B Programmed cell death p 23.2 2.9E+02 0.0099 22.1 10.4 68 275-343 168-239 (307)
372 3c1d_A Protein ORAA, regulator 23.1 2E+02 0.0067 20.2 10.7 11 113-123 51-61 (159)
373 4e2i_2 DNA polymerase alpha su 23.0 1.1E+02 0.0038 18.5 3.4 28 325-352 5-32 (78)
374 2ve8_A FTSK, DNA translocase F 21.9 1.4E+02 0.0047 17.9 4.8 27 25-52 27-53 (73)
375 2ko4_A Mediator of RNA polymer 21.4 1.5E+02 0.005 18.0 3.8 32 51-82 31-62 (81)
376 3ctd_A Putative ATPase, AAA fa 21.0 2.6E+02 0.009 20.8 10.2 48 58-106 34-84 (213)
377 3l6a_A Eukaryotic translation 20.9 3.5E+02 0.012 22.2 14.4 66 94-160 14-81 (364)
378 1q2z_A ATP-dependent DNA helic 20.6 53 0.0018 21.9 2.0 49 35-86 41-93 (120)
379 2etb_A Transient receptor pote 20.0 1.8E+02 0.0063 21.8 5.4 19 33-51 11-29 (256)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.8e-35 Score=257.27 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHhcCCCCCch-hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC---------h
Q 018582 3 EKAEALLEKMKELNLGFSSM-PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND---------I 72 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~ 72 (353)
..+..++..+.++++.+++. .++.+|+.|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 45667778888877765543 5888999999999999999999999999999999999999999987665 5
Q ss_pred hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018582 73 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 152 (353)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (353)
+.|.++|++|.+.| +.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 78999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582 153 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 210 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (353)
|.+.|+.||..||+++|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-34 Score=251.66 Aligned_cols=204 Identities=10% Similarity=0.063 Sum_probs=115.6
Q ss_pred HHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC---------HH
Q 018582 40 IPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL---------FE 109 (353)
Q Consensus 40 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 109 (353)
+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.| +.||..+||.||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 334444555444443332 35556666666666666666666666666 66666666666666655443 45
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 110 KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582 190 SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244 (353)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 244 (353)
+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666555544
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-32 Score=243.84 Aligned_cols=284 Identities=10% Similarity=-0.018 Sum_probs=242.8
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 133 (353)
Q Consensus 54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 133 (353)
++..+|..++.++.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++....+ .+..+|+.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 379 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAV 379 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHH
Confidence 566778888888888899999999998888763 55777888888888899999999999988876543 478899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 213 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (353)
+..|.+.|++++|.++|+++.+..+ .+..+|..++.+|.+.|++++|.++|+++.+.++ .+..+|+.++.+|.+.|++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999988754 4678999999999999999999999999998764 4889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCCCCccc--HHHHHHHHHHHHhcC
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT----GRGDGGKWVPS--SETIRTFMRHFEQEK 287 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~--~~~~~~l~~~~~~~~ 287 (353)
++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. + ..|+ ..+|..++.+|.+.|
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ------SNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC------CCSGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc------cchhhHHHHHHHHHHHHHHhc
Confidence 99999999999874 347889999999999999999999999999887 3 2366 789999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHHH
Q 018582 288 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAI 350 (353)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~ 350 (353)
++++|.+.++++.+.++ .+..+|..++.+|.+.|++.+++...-+...+.|+.......++-
T Consensus 531 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp CHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999988 899999999999999999766554333344457776665544443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-31 Score=238.47 Aligned_cols=302 Identities=12% Similarity=0.064 Sum_probs=275.4
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|+++|+.+.+. +++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..++++
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 288 LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 57899999999876 4889999999999999999999999999999865 45788999999999999999999999999
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
+.+. .+.+..+++.++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|+++|+++.+.++ .+
T Consensus 365 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 440 (597)
T 2xpi_A 365 LVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GT 440 (597)
T ss_dssp HHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TC
T ss_pred HHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cc
Confidence 9976 5778999999999999999999999999999876543 788999999999999999999999999988765 47
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--hhhH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR----GADPN--AKTW 235 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~ 235 (353)
..+|..++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 889999999999999999999999999987644 8899999999999999999999999999876 66787 7899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHH
Q 018582 236 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI 315 (353)
Q Consensus 236 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 315 (353)
..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..+|.+.|++++|.+.++++.+.+| .+...|..+.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~ 591 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-------TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDLLK 591 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 999999999999999999999999986 14789999999999999999999999999999998 8888888888
Q ss_pred HHHH
Q 018582 316 RTYA 319 (353)
Q Consensus 316 ~~~~ 319 (353)
.+|.
T Consensus 592 ~~~~ 595 (597)
T 2xpi_A 592 RALE 595 (597)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 7764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-27 Score=204.41 Aligned_cols=326 Identities=13% Similarity=0.113 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|...++...+... .+..+|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++...|++++|...|++
T Consensus 49 ~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (388)
T 1w3b_A 49 LDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556666665555432 455667777777777777777777777776642 22334567777777777777777777777
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
+.+. .+.+...+..+...+...|++++|.+.|+++....+. +..+|..+...+...|++++|...|+++.+..+ .+
T Consensus 127 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~ 202 (388)
T 1w3b_A 127 ALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NF 202 (388)
T ss_dssp HHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc
Confidence 7765 3444555666777777777777777777777665443 566777777778888888888888887777654 34
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
...+..+...+...|++++|...+++.....+. +..++..+...|.+.|++++|...|+++.+.+. .+..+|..+...
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 567777777888888888888888887776533 677888888888888999999999988887642 256778888888
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...++++.+..| .+..++..++.+|.+.
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHc
Confidence 888899999999999888875 14677888888889999999999999998888877 7788889999999999
Q ss_pred CCChHHHHHHHHhCCCccCHhH
Q 018582 322 GRTSPVMLRRLKMEKVEVSEAS 343 (353)
Q Consensus 322 g~~~~~~~~~m~~~~~~p~~~~ 343 (353)
|++.+++-..-+...+.|+...
T Consensus 353 g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTTCHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHH
Confidence 9877665433334445676544
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.1e-27 Score=201.65 Aligned_cols=326 Identities=14% Similarity=0.038 Sum_probs=283.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
.+++|++.++.+.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...|+
T Consensus 14 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46899999999987663 455677788888999999999999999988753 5577899999999999999999999999
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582 81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 160 (353)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (353)
++.+. .+.+..++..+..++.+.|++++|.+.|+++....+. +...+..+...+...|++++|.+.|+++....+ .
T Consensus 92 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~ 167 (388)
T 1w3b_A 92 HALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-N 167 (388)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence 99986 4666778999999999999999999999999887654 567788899999999999999999999988765 3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
+..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...|++..+..+ .+..++..+..
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 245 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLAC 245 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHH
Confidence 5778999999999999999999999999987754 788899999999999999999999999987642 25788999999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
.+...|++++|++.++++.+.+ | +..++..+..++.+.|++++|...++++.+..+ .+..+|..+...+.
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 9999999999999999999986 4 477899999999999999999999999999988 89999999999999
Q ss_pred HcCCChHHHHHHHHhCCCccCHhH
Q 018582 320 AAGRTSPVMLRRLKMEKVEVSEAS 343 (353)
Q Consensus 320 ~~g~~~~~~~~~m~~~~~~p~~~~ 343 (353)
+.|+..+++-..-+.....|+...
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHH
Confidence 999976665433344445676543
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=7.4e-26 Score=196.88 Aligned_cols=327 Identities=9% Similarity=0.004 Sum_probs=267.3
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 018582 6 EALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD 85 (353)
Q Consensus 6 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 85 (353)
...|........ .+...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.
T Consensus 12 ~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -----------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444444432 567889999999999999999999999998753 456788999999999999999999999999997
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH---HHHHHH------------HHHHHccCCHHHHHHHH
Q 018582 86 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL---SAYQFL------------ITLYGQTGNLSEVYRIW 150 (353)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~ 150 (353)
.+.+..++..+..+|.+.|++++|...|+++....+. +. .++..+ ...+...|++++|+..|
T Consensus 90 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 90 --KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667889999999999999999999999999876433 33 555555 44488999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 018582 151 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 230 (353)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 230 (353)
+++.+..+ .+..++..+..++...|++++|.+.++++.+..+ .+..++..+...|...|++++|...|+++.+... .
T Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~ 243 (450)
T 2y4t_A 167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-D 243 (450)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 99988765 4778899999999999999999999999988753 4789999999999999999999999999987632 2
Q ss_pred ChhhHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-----HHHHHHHHHHHHhcCChhhHH
Q 018582 231 NAKTWEIF------------SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-----SETIRTFMRHFEQEKDVDGAE 293 (353)
Q Consensus 231 ~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~ 293 (353)
+...+..+ ...+.+.|++++|.++|+++.+.. |+ ...+..+..++.+.|++++|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--------PSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 34445444 788999999999999999999976 44 457888999999999999999
Q ss_pred HHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHH
Q 018582 294 GFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEA 349 (353)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~ 349 (353)
..++++.+..+ .+..+|..++.+|...|++.+++...-+...+.|+.......++
T Consensus 316 ~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 316 RVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999887 78999999999999999977766544445557787665444433
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.2e-24 Score=187.61 Aligned_cols=300 Identities=11% Similarity=0.059 Sum_probs=258.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
.+++|+++|+.+.+... .+..+|..+...+...|++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+
T Consensus 41 ~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 118 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 118 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36899999999987653 578899999999999999999999999999864 4456788999999999999999999999
Q ss_pred HHHHcCCCCCcH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH
Q 018582 81 EMKRDGRVAADW---TTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 145 (353)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (353)
++.+. .+.+. ..+..+ ...+.+.|++++|...|+++....+. +..++..+...|...|++++
T Consensus 119 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 195 (450)
T 2y4t_A 119 KVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRK 195 (450)
T ss_dssp HHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGG
T ss_pred HHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHH
Confidence 99985 34444 555555 44589999999999999999886554 78899999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH------------HHHHHhcCCh
Q 018582 146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM------------IGAYAKEGRL 213 (353)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~ 213 (353)
|++.|+++.+..+ .+..++..+..++...|++++|...++++....+. +...+..+ ...+...|++
T Consensus 196 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (450)
T 2y4t_A 196 AISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRY 273 (450)
T ss_dssp GHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999988754 46789999999999999999999999999877543 55555555 8889999999
Q ss_pred HHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582 214 ENAEELKERARRRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD 288 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (353)
++|...|+++.+. .|+ ...+..+...+.+.|++++|++.++++.+.. +.+..+|..+..+|...|+
T Consensus 274 ~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 274 TDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-------PDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhcC
Confidence 9999999999885 344 3478888999999999999999999999875 1368899999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582 289 VDGAEGFLEILKKAVDDLGVEVFEPLIRT 317 (353)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (353)
+++|...++++.+..| .+...+..+..+
T Consensus 345 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 372 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNE-NDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence 9999999999999888 788888888844
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=1.3e-22 Score=170.79 Aligned_cols=310 Identities=9% Similarity=0.007 Sum_probs=259.5
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
|+..+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+. .+.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHH
Confidence 45678888999999999999999999998863 445778889999999999999999999999987 456778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582 100 SIYVEAGLFEKAERALKELENRNAH--RDLSAYQFL------------ITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 165 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (353)
.++...|++++|...+++..+..+. .+...+..+ ...+...|++++|.+.++++.+..+ .+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 9999999999999999999876441 144445444 5788999999999999999988765 467889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH---------
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE--------- 236 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--------- 236 (353)
..+..++...|++++|...++++.+..+ .+..++..+...|...|++++|...+++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 47889999999999999999999999999876322 333333
Q ss_pred ---HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-H----HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 018582 237 ---IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-S----ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 308 (353)
Q Consensus 237 ---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 308 (353)
.+...+.+.|++++|.+.++++.+.. |+ . ..+..+..++.+.|++++|...++++.+..+ .++
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 306 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTE--------PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNV 306 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccH
Confidence 23666889999999999999999976 43 2 3455678899999999999999999999887 789
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHH
Q 018582 309 EVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK 344 (353)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~ 344 (353)
.+|..+...|.+.|++.+++-...+...+.|+....
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999999777765555555667876543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-23 Score=185.43 Aligned_cols=329 Identities=12% Similarity=0.058 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|++.|+.+...+ |+..+|..+..++.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|++
T Consensus 22 ~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 22 YDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 567778888777765 577777777788888888888888888777653 33445677777777777777777777777
Q ss_pred HHHcCCC-------------------------------------------------------------------------
Q 018582 82 MKRDGRV------------------------------------------------------------------------- 88 (353)
Q Consensus 82 ~~~~~~~------------------------------------------------------------------------- 88 (353)
+...++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 6554210
Q ss_pred -------------------------------------------------------CCcHHHHHHHHHHHHhcCCHHHHHH
Q 018582 89 -------------------------------------------------------AADWTTFSNLASIYVEAGLFEKAER 113 (353)
Q Consensus 89 -------------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (353)
+.+..++..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0112233334444444455555555
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582 114 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 193 (353)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (353)
.++++....+. ..++..+...+...|++++|.+.++++....+ .+..++..+...+...|++++|...++++.+..+
T Consensus 259 ~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 259 DIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 55554443322 44455555555555555555555555544432 2344555566666666666666666666665543
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-
Q 018582 194 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS- 272 (353)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 272 (353)
. +...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.... .++
T Consensus 336 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~ 408 (514)
T 2gw1_A 336 E-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK-----LDGI 408 (514)
T ss_dssp S-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----SSSC
T ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-----cchH
Confidence 3 55566666777777777777777777766553 224566777777788888888888888887775411 011
Q ss_pred ---HHHHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHH
Q 018582 273 ---SETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK 344 (353)
Q Consensus 273 ---~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~ 344 (353)
...+..+...+.. .|++++|...++++.+..+ .+..++..+...|.+.|++.+++-..-+...+.|+....
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 3388899999999 9999999999999999888 788999999999999999666654334444456665543
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.5e-22 Score=168.61 Aligned_cols=293 Identities=11% Similarity=-0.027 Sum_probs=254.3
Q ss_pred CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHH
Q 018582 17 LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS 96 (353)
Q Consensus 17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (353)
.+.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+. .+.+..++.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHH
Confidence 34677888999999999999999999999998864 456667888889999999999999999999987 566778889
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 97 NLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 97 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
.+...+...| ++++|...|++.....+. +..+|..+...+...|++++|.+.+++..+..+. +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 9999999999 999999999999876554 6778999999999999999999999999887653 456777799999999
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHccCC
Q 018582 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG--------ADPNAKTWEIFSDYYLRNGD 247 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~~~ 247 (353)
|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. .+.+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999987644 78899999999999999999999999987642 13345788999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH-HcCC
Q 018582 248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA-AAGR 323 (353)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 323 (353)
+++|.+.+++..+... .+...+..+...+.+.|++++|...++++.+..+ .+...+..+..++. ..|+
T Consensus 252 ~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-------QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHHHST-------TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhhCc-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence 9999999999998861 3578899999999999999999999999999888 78899999999884 4454
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=4.6e-22 Score=167.45 Aligned_cols=304 Identities=11% Similarity=0.037 Sum_probs=256.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582 1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
.+++|++.|+.+.+... .+..+|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...|+
T Consensus 18 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 36899999999988764 567889999999999999999999999998863 3356788999999999999999999999
Q ss_pred HHHHcCCCC---CcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH
Q 018582 81 EMKRDGRVA---ADWTTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 145 (353)
Q Consensus 81 ~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (353)
++.+. .+ .+...+..+ ...+...|++++|...++++.+..+. +..++..+...+...|++++
T Consensus 96 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 96 KVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRK 172 (359)
T ss_dssp HHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHH
Confidence 99985 23 355555555 58899999999999999999887654 78899999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH------------HHHHHHHhcCCh
Q 018582 146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN------------VMIGAYAKEGRL 213 (353)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~ 213 (353)
|...+++.....+ .+..++..+...+...|++++|...+++..+..+. +...+. .+...+.+.|++
T Consensus 173 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 250 (359)
T 3ieg_A 173 AISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRY 250 (359)
T ss_dssp HHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999988754 46788999999999999999999999999887544 444333 236678999999
Q ss_pred HHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCCh
Q 018582 214 ENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 289 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 289 (353)
++|...++++.+.... +. ..+..+...+...|++++|.+.+++..+.. +.+..++..+...+.+.|++
T Consensus 251 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 251 TDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-------PDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCH
Confidence 9999999999886432 22 234557788999999999999999999986 13688999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582 290 DGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 320 (353)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (353)
++|...++++.+..| .+...+..+..+...
T Consensus 323 ~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNE-NDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence 999999999999988 778888888777654
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.7e-21 Score=162.19 Aligned_cols=293 Identities=8% Similarity=-0.059 Sum_probs=246.9
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 018582 52 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ 131 (353)
Q Consensus 52 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 131 (353)
.+.+...+..+...+...|++++|.++|+++.+. .+.+...+..++.++...|++++|...++++.+..+. +..+|.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHH
Confidence 4567888889999999999999999999999987 4666677778889999999999999999999887654 678899
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582 132 FLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 210 (353)
Q Consensus 132 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 210 (353)
.+...+...| ++++|.+.|++.....+ .+...+..+...+...|++++|...++++.+..+. +...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 9999999999 99999999999987754 35678899999999999999999999999987644 567788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCC--CcccHHHHHHHHHHHHhcCC
Q 018582 211 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK--WVPSSETIRTFMRHFEQEKD 288 (353)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 288 (353)
|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+........ ......++..+..++.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999874 3367889999999999999999999999998863111000 12346789999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHHHh
Q 018582 289 VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351 (353)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 351 (353)
+++|...++++.+..+ .+..+|..+...|.+.|+..+++...-+...+.|+.......++.|
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 9999999999999988 7899999999999999998877766666667788766555544443
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-21 Score=172.68 Aligned_cols=291 Identities=10% Similarity=-0.036 Sum_probs=204.8
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582 21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 100 (353)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (353)
+..|..+...+.+.|++++|+..|+++...+ |+..+|..+..++...|++++|...++++.+. .+.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHH
Confidence 4567788889999999999999999999865 79999999999999999999999999999997 4677889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHccCCC-------------------------------------------------------
Q 018582 101 IYVEAGLFEKAERALKELENRNAHR------------------------------------------------------- 125 (353)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------- 125 (353)
++.+.|++++|...|+++...++..
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999887654311
Q ss_pred -----------------------CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----h--CC------CCChhHHH
Q 018582 126 -----------------------DLSAYQFLITLYGQ---TGNLSEVYRIWRSLRL-----A--FP------NTANISYL 166 (353)
Q Consensus 126 -----------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~ 166 (353)
+...+......+.. .|++++|...|+++.. . .+ +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 02222223333332 6777777777777666 2 11 11234566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 246 (353)
.+...+...|++++|...++++.+..+. ...+..+...|...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 6667777777777777777777665433 6666666777777777777777777766543 224556666666667777
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChH
Q 018582 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP 326 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (353)
++++|...++++.+... .+...+..+...+...|++++|...++++.+..+ .+..+|..+...|.+.|++.+
T Consensus 319 ~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDP-------ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp CTTHHHHHHHHHHHTCS-------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhCh-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHH
Confidence 77777777777666541 2345566666666666666666666666666655 555666666666666666443
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.7e-21 Score=171.86 Aligned_cols=317 Identities=13% Similarity=0.077 Sum_probs=252.6
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|++.|+.+....+ .++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+.
T Consensus 41 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 118 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSV 118 (537)
T ss_dssp CC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5678888888887763 567888888999999999999999999988754 34566778888888888888888776642
Q ss_pred H-------------------------------------------------------------------------------
Q 018582 82 M------------------------------------------------------------------------------- 82 (353)
Q Consensus 82 ~------------------------------------------------------------------------------- 82 (353)
+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T 3fp2_A 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198 (537)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence 2
Q ss_pred ------------------------------HHcCCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582 83 ------------------------------KRDGRVAAD-------WTTFSNLASIYVEAGLFEKAERALKELENRNAHR 125 (353)
Q Consensus 83 ------------------------------~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (353)
.+. .+.+ ..++..+...+...|++++|...+++..... |
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~ 274 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--P 274 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--C
Confidence 111 1111 2245566677888999999999999998764 4
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205 (353)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (353)
+..++..+...+...|++++|.+.++++.+..+ .+..++..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 352 (537)
T 3fp2_A 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLAC 352 (537)
T ss_dssp CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 578899999999999999999999999988765 36778999999999999999999999999887644 6788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh
Q 018582 206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 285 (353)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (353)
.|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..... .........+......+.+
T Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 353 LLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ-EKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-SSCSSTTHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998874 3356788999999999999999999999988864110 0011122334555667777
Q ss_pred c----------CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582 286 E----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 329 (353)
Q Consensus 286 ~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 329 (353)
. |++++|...++++.+..+ .+..+|..+...|.+.|+..+++-
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence 7 999999999999999988 888999999999999999666553
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=1.3e-21 Score=165.51 Aligned_cols=284 Identities=11% Similarity=-0.017 Sum_probs=229.0
Q ss_pred HHhcCCcchHHH-HHHHHHHCCC-CC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582 31 YAKTGHPEKIPA-IIQEMKASSI-MP--DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 106 (353)
Q Consensus 31 ~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (353)
+...|++++|++ .|++...... .| +...+..+...+...|++++|...|+++.+. .+.+..++..+..++.+.|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCc
Confidence 445678889988 8876654311 11 3567888999999999999999999999997 5678889999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH-H--------------HHHH
Q 018582 107 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL-N--------------MIQV 171 (353)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~ 171 (353)
++++|...|+++....+. +..++..+...+...|++++|.+.++++....+.. ...+. . .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999999887654 78899999999999999999999999998876532 22222 1 2333
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582 172 LVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 250 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 250 (353)
+...|++++|...++++.+..+.. +..++..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 448999999999999998875432 57899999999999999999999999998864 3357889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-----------hhhhHHHHHHHH
Q 018582 251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG-----------VEVFEPLIRTYA 319 (353)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~ 319 (353)
|++.++++.+.. +.+...+..+..++.+.|++++|...++++.+..+ .+ ..+|..+..+|.
T Consensus 270 A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 270 AVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR-KSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TC------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCCCccccccchhhHHHHHHHHHHH
Confidence 999999999876 13578899999999999999999999999998766 33 789999999999
Q ss_pred HcCCChHH
Q 018582 320 AAGRTSPV 327 (353)
Q Consensus 320 ~~g~~~~~ 327 (353)
..|+..++
T Consensus 342 ~~g~~~~A 349 (368)
T 1fch_A 342 MLGQSDAY 349 (368)
T ss_dssp HHTCGGGH
T ss_pred HhCChHhH
Confidence 99995443
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=1.4e-21 Score=165.30 Aligned_cols=274 Identities=12% Similarity=-0.021 Sum_probs=228.4
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~ 139 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALA 139 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 45678899999999999999999999999864 456678899999999999999999999999997 467888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH---------------HHHHHHccCCHHHHHHHHHHHHHhCCCC-Chh
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQF---------------LITLYGQTGNLSEVYRIWRSLRLAFPNT-ANI 163 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 163 (353)
.++...|++++|...++++....+. +...+.. .+..+...|++++|...|+++....+.. +..
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 9999999999999999999886544 2222221 2333448899999999999998876532 578
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 243 (353)
++..+...+...|++++|...++++....+. +..++..+...+...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 8999999999999999999999999887643 78899999999999999999999999998864 336788999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCC---C-CcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582 244 RNGDMKLAVDCLEKAIDTGRGDGG---K-WVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (353)
+.|++++|.+.++++.+......+ . ......+|..+..++...|++++|..++++.
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999887511000 0 0012688999999999999999999987643
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=1.9e-21 Score=164.33 Aligned_cols=274 Identities=12% Similarity=-0.039 Sum_probs=222.3
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
+...|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++...|++++|...|+++.+. .+.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 45669999999999999999999999998864 456778999999999999999999999999997 466788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHH
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHR---------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMI 169 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 169 (353)
.+|...|++++|...++++.+..+.. ....+..+...+...|++++|++.|+++.+..+. ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999997754320 1223344578899999999999999999888653 2678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582 170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 249 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 249 (353)
..+...|++++|...++++.+..+. +..+|..+..+|...|++++|...|++..+.. +.+..++..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999987644 78899999999999999999999999999864 235788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCC-----CcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 250 LAVDCLEKAIDTGRGDGGK-----WVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
+|.+.|+++.+......+. ...+..+|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998875110000 001357889999999999999888877654
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.3e-21 Score=163.89 Aligned_cols=259 Identities=12% Similarity=0.020 Sum_probs=216.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
+...+..+...+.+.|++++|...|+++.+. .+.+..++..+..+|.+.|++++|...|++.....+. +..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 4556889999999999999999999999997 5778899999999999999999999999999887654 688999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCC---------ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNT---------ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMI 204 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li 204 (353)
..|...|++++|+..|+++.+..+.. ....+..+...+...|++++|...++++.+..+.. +..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999998764321 01223345788999999999999999999875432 688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHH
Q 018582 205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHF 283 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 283 (353)
..|...|++++|...|++..+.. +.+..+|..+...|...|++++|++.++++.+.. | +..++..+..+|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHH
Confidence 99999999999999999999874 3367899999999999999999999999999986 4 478899999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCC-----------CChhhhHHHHHHHHHcCCCh
Q 018582 284 EQEKDVDGAEGFLEILKKAVDD-----------LGVEVFEPLIRTYAAAGRTS 325 (353)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~ 325 (353)
.+.|++++|...++++.+..+. .+..+|..+..++...|+..
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 9999999999999999886542 14678999999999999844
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=2.3e-20 Score=155.04 Aligned_cols=275 Identities=10% Similarity=-0.060 Sum_probs=227.2
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+. .+.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence 55677888899999999999999999998863 446678888999999999999999999999997 466788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHhCCCCChhH
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFL--------------IT-LYGQTGNLSEVYRIWRSLRLAFPNTANIS 164 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (353)
..+...|++++|.+.++++....+. +...+..+ .. .+...|++++|.+.++++.+..+ .+..+
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHH
Confidence 9999999999999999999876543 33333333 22 37788999999999999988765 36788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 244 (353)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 244 (353)
+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999887643 78899999999999999999999999998864 3367889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCC-----cccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 245 NGDMKLAVDCLEKAIDTGRGDGGKW-----VPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
.|++++|.+.++++.+......... ..+...+..+..++.+.|++++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999988752100000 00467889999999999999999998875443
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=5.9e-20 Score=163.24 Aligned_cols=289 Identities=12% Similarity=0.008 Sum_probs=167.7
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+. .+.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHH
Confidence 34668888999999999999999999999864 456788999999999999999999999999997 467788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCC-------------------------------------CHH--------------
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHR-------------------------------------DLS-------------- 128 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------~~~-------------- 128 (353)
.++...|++++|...|+.+.. .+.+ +..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999998853311 1100 000
Q ss_pred ----------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCCh
Q 018582 129 ----------------AYQFLITLYGQ--------TGNLSEVYRIWRSLRLAFPNTA------NISYLNMIQVLVNLKDL 178 (353)
Q Consensus 129 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 178 (353)
....+...+.. .|++++|..+++++.+..+... ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 00111111110 1244455555555444332110 11234444445555555
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 018582 179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA 258 (353)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 258 (353)
++|...+++..+..+ +...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.+.++++
T Consensus 260 ~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555555555554432 244445555555555555555555555544321 23444555555555555555555555555
Q ss_pred HHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 259 IDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
.+... .+...+..+...+...|++++|...++++.+..+ .+..+|..+...|...|+
T Consensus 337 ~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 337 QSLNP-------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHCT-------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCC
Confidence 55430 1234445555555555555555555555555544 444555555555555555
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=3.5e-19 Score=147.93 Aligned_cols=261 Identities=11% Similarity=0.012 Sum_probs=221.7
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
+...+......+...|++++|..+|+++.+. .+.+..++..+..++...|++++|...++++.+..+. +..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHH
Confidence 4556778888999999999999999999987 5668888999999999999999999999999887544 788999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH--------------HH-HHHhcCChhHHHHHHHHHHhcCCCCcHHH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM--------------IQ-VLVNLKDLPGAEKCFKEWESGCATYDIRV 199 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (353)
..+...|++++|.+.++++....+. +...+..+ .. .+...|++++|...++++.+..+. +...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence 9999999999999999999876543 23333333 22 377788999999999999987644 7889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582 200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 279 (353)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (353)
+..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+... .+...+..+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l 246 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-------GYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHH
Confidence 9999999999999999999999998864 33678899999999999999999999999998861 357889999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCC-----------ChhhhHHHHHHHHHcCCChHHH
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKAVDDL-----------GVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
...+.+.|++++|.+.++++.+..+.. +..+|..+..++.+.|+...+.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999887732 6889999999999999965543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=7.6e-19 Score=143.10 Aligned_cols=258 Identities=15% Similarity=0.092 Sum_probs=189.5
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDS--YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 106 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (353)
+.....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. . .+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCCC
Confidence 3455678888888887765442 3443 3445667888888888888876543 2 5677778888888888888
Q ss_pred CHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 018582 107 LFEKAERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 185 (353)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 185 (353)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888887765434 456667777888888888888888876 356677888888888888888888888
Q ss_pred HHHHhcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582 186 KEWESGCATYDIRV--TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 186 ~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 263 (353)
+++.+..+. +... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++.++..
T Consensus 154 ~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 154 KKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888876532 2111 1223344445588888888888888763 4577788888888888888888888888888876
Q ss_pred CCCCCCcc-cHHHHHHHHHHHHhcCChhh-HHHHHHHHHhcCCCCChhh
Q 018582 264 GDGGKWVP-SSETIRTFMRHFEQEKDVDG-AEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 264 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~ 310 (353)
| +..++..++..+...|+.++ +.++++++.+.+| .++.+
T Consensus 231 -------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P-~~~~~ 271 (291)
T 3mkr_A 231 -------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR-SHPFI 271 (291)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred -------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-CChHH
Confidence 4 57778888888888888765 5678888888777 55443
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=9.3e-20 Score=152.14 Aligned_cols=286 Identities=11% Similarity=0.082 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|.++++++.. ..+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 19 ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 19 LDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5778888888833 359999999999999999999999652 6788999999999999999999998887
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
.++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 7773 4557788899999999999999998885 267779999999999999999999999976
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHH
Confidence 47899999999999999999999988 278999999999999999999976655432 234445578999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCC------ChhhhHHH
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDL------GVEVFEPL 314 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l 314 (353)
|.+.|.+++|..+++..+... .-...+|+-+..+|++- +++...+.++.... .+++| +...|.-+
T Consensus 217 Yek~G~~eEai~lLe~aL~le-------~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 999999999999999988764 14577888888788765 34444444443322 33312 47789999
Q ss_pred HHHHHHcCCChHHHHHHHHhCCC
Q 018582 315 IRTYAAAGRTSPVMLRRLKMEKV 337 (353)
Q Consensus 315 ~~~~~~~g~~~~~~~~~m~~~~~ 337 (353)
+-.|.+.+++..++...|.....
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHHHhhchHHHHHHHHHhCChh
Confidence 99999999999988877766544
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=4.7e-18 Score=138.40 Aligned_cols=258 Identities=10% Similarity=0.061 Sum_probs=206.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582 63 MRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT 140 (353)
Q Consensus 63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (353)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 34556789999999998876553 3443 35567889999999999999877552 345778889999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 018582 141 GNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 219 (353)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 219 (353)
++.++|++.++++...+..| +...+..+..++...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998876445 445667777999999999999999987 45788999999999999999999999
Q ss_pred HHHHHhcCCCCChhhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582 220 KERARRRGADPNAKTW---EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 220 ~~~~~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (353)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-------SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999874 553222 223344456699999999999999985 156889999999999999999999999
Q ss_pred HHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHH-HhCCCccCHhH
Q 018582 297 EILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRL-KMEKVEVSEAS 343 (353)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m-~~~~~~p~~~~ 343 (353)
+++.+..| .++.++..++..+...|+..+++.... +...+.|+...
T Consensus 224 ~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 224 QEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 99999998 899999999999999999765433222 22344666544
No 26
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=167.91 Aligned_cols=153 Identities=12% Similarity=0.154 Sum_probs=126.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELE---NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 165 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (353)
..-..+|++||++|++.|++++|.++|++|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999998875 4588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hhhHHHH
Q 018582 166 LNMIQVLVNLKDL-PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN------AKTWEIF 238 (353)
Q Consensus 166 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l 238 (353)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999988765554 333333333 2334443 4555666
Q ss_pred HHHHHccC
Q 018582 239 SDYYLRNG 246 (353)
Q Consensus 239 i~~~~~~~ 246 (353)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 67777655
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=168.72 Aligned_cols=157 Identities=8% Similarity=-0.034 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHH---HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 018582 126 DLSAYQFLITLYGQTGNLSEVYRIWRSLR---LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV 202 (353)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (353)
-..+|+++|++|++.|+.++|.++|++|. ..|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35689999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHH
Q 018582 203 MIGAYAKEGRL-ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 281 (353)
Q Consensus 203 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (353)
||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+ +.+++..+++ ..+.+|.....|...+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 7899999999999999999999999876654 3455555555 3343332222222444455556
Q ss_pred HHHhcC
Q 018582 282 HFEQEK 287 (353)
Q Consensus 282 ~~~~~~ 287 (353)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-17 Score=134.00 Aligned_cols=225 Identities=13% Similarity=0.047 Sum_probs=138.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--C----HHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--D----LSAYQ 131 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 131 (353)
.|..+...+...|++++|...|+++.+. . .+..++..+..++...|++++|...+++.....+.. + ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWEL--H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3444555555555555555555555554 2 444555555555555566666665555554432211 1 35555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582 132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 211 (353)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 211 (353)
.+...+...|++++|.+.|++.....+ +. ..+...|++++|...++++....+ .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 666666666666666666666655432 21 234455666677777776666542 25566667777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhh
Q 018582 212 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG 291 (353)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (353)
++++|...+++..+.. +.+..++..+...+...|++++|++.+++..+... .+...+..+..++.+.|++++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHhhHHH
Confidence 7777777777776653 22566677777777777777777777777777651 236667777777777777777
Q ss_pred HHHHHHHHHhcC
Q 018582 292 AEGFLEILKKAV 303 (353)
Q Consensus 292 a~~~~~~~~~~~ 303 (353)
|...+++..+..
T Consensus 226 A~~~~~~a~~~~ 237 (258)
T 3uq3_A 226 ALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777777777655
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=1.8e-17 Score=129.14 Aligned_cols=199 Identities=18% Similarity=0.111 Sum_probs=104.1
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 133 (353)
Q Consensus 54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 133 (353)
++...+..+...+.+.|++++|...|++..+. .+.+...+..+..++.+.|++++|+..+++..+..+. +..++..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 34444555555555555555555555555543 3444455555555555555555555555555544332 44455555
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 018582 134 ITLYGQT-----------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV 202 (353)
Q Consensus 134 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (353)
...+... |++++|+..|++..+..+. +...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 5555555 6666666666666555432 44555666666666666666666666666555 35566666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 018582 203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259 (353)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 259 (353)
+..+|...|++++|...|++..+..+ .+...+..+...+...|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666666666666666665432 245556666666666666666666666544
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=4.8e-17 Score=126.76 Aligned_cols=201 Identities=12% Similarity=0.039 Sum_probs=166.7
Q ss_pred CCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHH
Q 018582 18 GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 97 (353)
Q Consensus 18 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 97 (353)
|++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+. .+.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 5788899999999999999999999999998863 446678889999999999999999999999997 4667889999
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582 98 LASIYVEA-----------GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL 166 (353)
Q Consensus 98 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (353)
+..++.+. |++++|+..+++..+..+. +..++..+...+...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 9999999999999887655 78899999999999999999999999998887 6788899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (353)
.+..++...|++++|...|++..+..+. +...+..+...+...|++++|...|++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999987644 788899999999999999999999987653
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=7.5e-19 Score=146.71 Aligned_cols=241 Identities=12% Similarity=0.137 Sum_probs=112.1
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 018582 33 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 112 (353)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 112 (353)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 567899999999988 2345999999999999999999999954 256668899999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582 113 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
+.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877663 3457789999999999999999998885 367789999999999999999999999976
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc
Q 018582 193 ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS 272 (353)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (353)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .+
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----------~~ 206 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----------VH 206 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----------TC
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----------hC
Confidence 37899999999999999999999998 278999999999999999999965544322 33
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582 273 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322 (353)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (353)
+.-...++..|.+.|.+++|..+++....... -....|+-|..+|++-.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~-ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT-CCHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHhcC
Confidence 33455788999999999999999999998885 88999999999888754
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.4e-17 Score=128.77 Aligned_cols=240 Identities=10% Similarity=-0.018 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--CC----hhHH
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN--TA----NISY 165 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 165 (353)
...+..+...+...|++++|...|++..+.. .+..++..+...+...|++++|++.+++..+..+. ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577889999999999999999999998877 68889999999999999999999999998775432 12 4788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 245 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 245 (353)
..+..++...|++++|...+++..+... + ...+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 8999999999999999999999998653 3 245677789999999999998763 22567788899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582 246 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 325 (353)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (353)
|++++|.+.++++.+... .+..++..+..++.+.|++++|...++++.+..+ .+..+|..+..+|.+.|+..
T Consensus 153 ~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999861 3578899999999999999999999999999988 78999999999999999966
Q ss_pred HHHHHHHHhCCCc------cCHhHHHHHHHHh
Q 018582 326 PVMLRRLKMEKVE------VSEASKKLLEAIC 351 (353)
Q Consensus 326 ~~~~~~m~~~~~~------p~~~~~~~l~~~c 351 (353)
.++...-+...+. |+.......+.-|
T Consensus 225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 225 SALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 5553222222233 7766655555444
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=1.6e-16 Score=133.81 Aligned_cols=250 Identities=12% Similarity=0.077 Sum_probs=215.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582 57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAYQFLIT 135 (353)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 135 (353)
..|..+...+...|++++|+..++++++. .+-+..+|+.+..++.+.|+ +++|+..|++.....+. +..+|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 46778888899999999999999999997 57778899999999999997 99999999999988766 7889999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChH
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK-EGRLE 214 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 214 (353)
.+...|++++|+..|+++.+..+. +...|..+..++...|++++|...++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999988763 7789999999999999999999999999998755 88999999999999 66657
Q ss_pred HH-----HHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcC
Q 018582 215 NA-----EELKERARRRGADPNAKTWEIFSDYYLRNG--DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 287 (353)
Q Consensus 215 ~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 287 (353)
+| +..|++..+.... +...|..+...+...| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-------p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-------HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-------CCCHHHHHHHHHHHHHHh
Confidence 77 5888888876432 5678888888898888 689999999888 443 145788889999998874
Q ss_pred --------C-hhhHHHHHHHH-HhcCCCCChhhhHHHHHHHHHc
Q 018582 288 --------D-VDGAEGFLEIL-KKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 288 --------~-~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
+ .++|.++++++ .+.+| .....|..+...+...
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHH
Confidence 2 58999999999 88888 7888899888877653
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=2.4e-16 Score=127.28 Aligned_cols=254 Identities=11% Similarity=0.012 Sum_probs=181.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHH
Q 018582 57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLI 134 (353)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 134 (353)
..+......+...|++++|...|+++.+. .+.+...+..+..+|...|++++|...+++.......+ ...+|..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34555666677777777777777777765 34445566777777777777777777777776632222 233477777
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (353)
..+...|++++|++.|++..+..+ .+..++..+...+...|++++|...+++..+..+ .+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888777654 3556788888888888888888888888877643 36677777773344455999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCccc------HHHHHHHHHHHHh
Q 018582 215 NAEELKERARRRGADPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPS------SETIRTFMRHFEQ 285 (353)
Q Consensus 215 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 285 (353)
+|...|+++.+... .+...+..+...+...|+ +++|...+++..+.... .|+ ..++..+...|.+
T Consensus 160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-----GGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-----GGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHHHH
Confidence 99999999887632 246677777888887787 88899999888776311 133 2578888999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 286 EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
.|++++|...++++.+..| .+...+..+.......
T Consensus 234 ~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDP-TNKKAIDGLKMKLEHH 268 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHhcCc-cHHHHHHHhhhhhccc
Confidence 9999999999999999998 7888887776655443
No 35
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.4e-14 Score=127.25 Aligned_cols=288 Identities=13% Similarity=0.067 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChh
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDIS 73 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~ 73 (353)
+++|++.|+...+.| ++..+..|...|.. .+++++|.+.|++..+.| +...+..+...+.. .++++
T Consensus 59 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 59 LTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 345666666555543 34455555555555 566666666666655543 34444455555555 45566
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----cCCHHH
Q 018582 74 GAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSE 145 (353)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 145 (353)
+|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+++++
T Consensus 133 ~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 133 ESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 6666666555543 23344445555544 455555555555554432 34444445444444 455555
Q ss_pred HHHHHHHHHHhCCC---------------------------------CChhHHHHHHHHHHh----cCChhHHHHHHHHH
Q 018582 146 VYRIWRSLRLAFPN---------------------------------TANISYLNMIQVLVN----LKDLPGAEKCFKEW 188 (353)
Q Consensus 146 a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 188 (353)
|.+.|++..+.+.. .+...+..+...+.. .++.++|...|++.
T Consensus 206 A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 206 SAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 55555544433210 122233334444444 44555555555554
Q ss_pred HhcCCCCcHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHH
Q 018582 189 ESGCATYDIRVTNVMIGAYAKE-----GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAID 260 (353)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~ 260 (353)
.+.+ +...+..+...|... +++++|...|++..+.| +...+..+...|...| ++++|+++|++..+
T Consensus 286 ~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 286 AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 4433 233444444444444 55555555555555443 2334444444444433 45556666666555
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582 261 TGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 320 (353)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (353)
.+ +...+..+...|.. .+++++|...|++..+.+ ++..+..|...|.+
T Consensus 360 ~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 360 KG---------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYY 411 (490)
T ss_dssp TT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 43 34455556666665 566677777776666544 35566666666666
No 36
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=3.2e-14 Score=124.89 Aligned_cols=284 Identities=12% Similarity=0.001 Sum_probs=218.4
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChhHHH
Q 018582 5 AEALLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAE 76 (353)
Q Consensus 5 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 76 (353)
+++.+....+. .++.++..|...|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34555555554 477888888888988 899999999999998865 66788888888988 89999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----cCCHHHHHH
Q 018582 77 RVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYR 148 (353)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 148 (353)
..|++..+.| +...+..|...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|++
T Consensus 100 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998864 45666778888988 889999999999998764 66788888888887 889999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHH
Q 018582 149 IWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELK 220 (353)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~ 220 (353)
.|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999988764 56778888888887 889999999999988765 45667777777776 67888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc-----CChhh
Q 018582 221 ERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE-----KDVDG 291 (353)
Q Consensus 221 ~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ 291 (353)
++..+.| +...+..+...|.. .+++++|+++|++..+.+ +...+..+...|... +++++
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---------NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 8877654 44566666666666 677888888888777654 334555566666665 67777
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582 292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322 (353)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (353)
|...+++..+.+. ...+..|...|.+.|
T Consensus 315 A~~~~~~a~~~~~---~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 315 AISWYTKSAEQGD---ATAQANLGAIYFRLG 342 (490)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhCC
Confidence 7777777666543 445566666665544
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=4.5e-15 Score=119.98 Aligned_cols=222 Identities=13% Similarity=0.011 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFL 133 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 133 (353)
++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..++..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444444445555555555555544421 22334444455555 555555555555554432 44445555
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582 134 ITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIG 205 (353)
Q Consensus 134 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 205 (353)
...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 555555555555554432 33445555555555 555555555555555543 3344445555
Q ss_pred HHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHH
Q 018582 206 AYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 277 (353)
Q Consensus 206 ~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ | ...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~-~~a~~ 222 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--------N-GGGCF 222 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------C-HHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--------C-HHHHH
Confidence 5555 556666666666555542 34455555555555 566666666666665554 2 44455
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 018582 278 TFMRHFEQ----EKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 278 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 304 (353)
.+...|.. .+++++|.+.+++..+.++
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 55555555 5666666666666665554
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=1.1e-15 Score=122.01 Aligned_cols=202 Identities=11% Similarity=-0.020 Sum_probs=154.5
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582 56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 135 (353)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 135 (353)
...+..+...+...|++++|...|+++.+. .+.+..++..+...+...|++++|.+.++++.+..+. +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHH
Confidence 345667777778888888888888888775 4556777778888888888888888888887766543 6677788888
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (353)
.+...|++++|.+.++++...+..| +...+..+..++...|++++|...+++..+..+. +...+..+...|...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888876622223 4456777778888888888888888888776533 6777888888888888888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 215 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 215 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888887653 3356677777888888888888888888888876
No 39
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1e-14 Score=129.36 Aligned_cols=319 Identities=11% Similarity=0.050 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHH-HhcCChhHHHH---
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL-AAVNDISGAER--- 77 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~--- 77 (353)
+++|+.+|+.+.+..+ .+...|..++..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.|.+
T Consensus 28 ~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 28 IDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 5788888888887652 46677888888888889999999999888875 36666666655422 34466655544
Q ss_pred -HHHHHHHc-CCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHccCCCC-HHHHH--------------
Q 018582 78 -VIEEMKRD-GRVAADWTTFSNLASIYVE---------AGLFEKAERALKELENRNAHRD-LSAYQ-------------- 131 (353)
Q Consensus 78 -~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~-~~~~~-------------- 131 (353)
+|+..... |..+++...|...+....+ .|+++.|..+|++.... +..+ ...|.
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHH
Confidence 55555442 3122345555555555443 45666666666665541 1111 11111
Q ss_pred ---------------------------------------------------HHHHHHHcc----CCH----HHHHHHHHH
Q 018582 132 ---------------------------------------------------FLITLYGQT----GNL----SEVYRIWRS 152 (353)
Q Consensus 132 ---------------------------------------------------~l~~~~~~~----~~~----~~a~~~~~~ 152 (353)
..+...... ++. ..+..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 111000000 011 133444555
Q ss_pred HHHhCCCCChhHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 018582 153 LRLAFPNTANISYLNMIQVLVN-------LKDLP-------GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE 218 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 218 (353)
.....+ .+...|...+..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..
T Consensus 264 al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 444322 244556666665554 56665 677777776652122356667777777777777777777
Q ss_pred HHHHHHhcCCCCC-h-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHH-HHhcCChhhHHHH
Q 018582 219 LKERARRRGADPN-A-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH-FEQEKDVDGAEGF 295 (353)
Q Consensus 219 ~~~~~~~~~~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~ 295 (353)
+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+... .+...+...... +...|+.+.|..+
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-------~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-------TRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-------CCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-------CchHHHHHHHHHHHHHcCChhHHHHH
Confidence 77777664 333 2 3566666666666677777777777666531 122222222211 2346666777777
Q ss_pred HHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHhC
Q 018582 296 LEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKME 335 (353)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 335 (353)
|+...+..| .++..|..++..+.+.|+ .+..+++.....
T Consensus 414 ~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 414 FELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 766666665 556666666666666666 344555554443
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.3e-15 Score=119.16 Aligned_cols=203 Identities=12% Similarity=-0.027 Sum_probs=126.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582 56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 135 (353)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 135 (353)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++.....+. +..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 344555556666666666666666666654 3444556666666666666666666666666554332 4556666666
Q ss_pred HHHcc-CCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582 136 LYGQT-GNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 213 (353)
Q Consensus 136 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 213 (353)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 66666666666665521112 2345666666666777777777777766655432 456666777777777777
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777777776655321355556666666677777777777777776654
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=6.9e-16 Score=129.87 Aligned_cols=248 Identities=10% Similarity=0.033 Sum_probs=209.2
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND-ISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
..+|+.+...+.+.|++++|++.|++..+.. +-+..+|+.+..++...|+ +++|+..|+++.+. .+.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4568888899999999999999999999853 3356688899999999996 99999999999997 577889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCh
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDL 178 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 178 (353)
.++...|++++|+..|+++....+. +..+|..+..++...|++++|+..|+++.+..+. +...|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999988765 8899999999999999999999999999998763 77889999999999 6665
Q ss_pred hHH-----HHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-----
Q 018582 179 PGA-----EKCFKEWESGCATYDIRVTNVMIGAYAKEG--RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG----- 246 (353)
Q Consensus 179 ~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~----- 246 (353)
++| ...+++.....+. +...|+.+...+...| ++++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 888 5889998887655 7889999999999888 689999999988 43 2345678888888888864
Q ss_pred ----ChHHHHHHHHHH-HHcCCCCCCCCccc-HHHHHHHHHHHH
Q 018582 247 ----DMKLAVDCLEKA-IDTGRGDGGKWVPS-SETIRTFMRHFE 284 (353)
Q Consensus 247 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~~~ 284 (353)
..++|+++++++ .+.. |. ...|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D--------P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD--------TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC--------GGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHH
Confidence 358999999999 7765 65 456666655554
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.8e-15 Score=120.75 Aligned_cols=210 Identities=15% Similarity=0.041 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 171 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (353)
...+..+...+...|++++|...|+++....+. +..++..+...+...|++++|.+.++++.+..+ .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 567788999999999999999999999876543 688899999999999999999999999988765 367788889999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582 172 LVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 250 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 250 (353)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732223 67788889999999999999999999998764 2357888899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582 251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 312 (353)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (353)
|.+.++++.+.. ..+...+..+...+...|++++|.+.++++.+..+ .+.....
T Consensus 194 A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGG-------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP-GSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSHHHHH
T ss_pred HHHHHHHHHHhC-------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCHHHHH
Confidence 999999998865 14577788888999999999999999999998876 5554443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=9.9e-16 Score=123.67 Aligned_cols=237 Identities=14% Similarity=0.055 Sum_probs=194.0
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc--HHHHHHH
Q 018582 21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD--WTTFSNL 98 (353)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 98 (353)
...+......+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++..+.+ ..++ ...|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHH
Confidence 4556777888999999999999999999864 3455689999999999999999999999999843 2222 3458899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 178 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (353)
...+...|++++|...|++..+..+. +..++..+...|...|++++|++.|++..+..+ .+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887655 678999999999999999999999999877643 3556677777344455699
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHccCCh
Q 018582 179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR---LENAEELKERARRRG-ADPN------AKTWEIFSDYYLRNGDM 248 (353)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~~~~ 248 (353)
++|.+.++++.+..+. +...+..+...+...|+ +++|...+++..+.. ..|+ ...|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987644 67788888889988888 888999998877531 1233 25778888999999999
Q ss_pred HHHHHHHHHHHHcC
Q 018582 249 KLAVDCLEKAIDTG 262 (353)
Q Consensus 249 ~~a~~~~~~~~~~~ 262 (353)
++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999987
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=2e-15 Score=118.02 Aligned_cols=215 Identities=11% Similarity=-0.002 Sum_probs=178.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHH
Q 018582 88 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 167 (353)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (353)
.+.+...+..+...+...|++++|...++++....+. +..++..+...+...|++++|.+.+++.....+ .+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 81 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNN 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHH
Confidence 3455677888999999999999999999999876544 678899999999999999999999999988754 36678888
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582 168 MIQVLVNL-KDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 245 (353)
Q Consensus 168 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 245 (353)
+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 99999999 99999999999998832222 46788889999999999999999999988764 23577888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582 246 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 312 (353)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (353)
|++++|.++++++.+.... .+...+..+...+...|+.+.|..+++.+.+..| .++....
T Consensus 161 ~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~ 220 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEV------LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP-YSEELQT 220 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 9999999999999887510 3466777777888999999999999999887776 5555443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=7.8e-15 Score=118.57 Aligned_cols=225 Identities=10% Similarity=-0.046 Sum_probs=198.6
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcHHH
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTT 94 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (353)
-++.++..+...+...|++++|.+.|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence 35678888999999999999999999999884 355778888899999 999999999999999863 6778
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582 95 FSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYL 166 (353)
Q Consensus 95 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (353)
+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999998864 77889999999999 999999999999998865 456777
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 018582 167 NMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIF 238 (353)
Q Consensus 167 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 238 (353)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888888 999999999999998875 56788889999999 999999999999998874 36778888
Q ss_pred HHHHHc----cCChHHHHHHHHHHHHcC
Q 018582 239 SDYYLR----NGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 239 i~~~~~----~~~~~~a~~~~~~~~~~~ 262 (353)
...|.. .+++++|.+.+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888988 999999999999999987
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=2.6e-16 Score=124.83 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=94.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 018582 57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 136 (353)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (353)
.+|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...+++.....+. +..++..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 34444555555555555555555555553 3344455555555555555555555555555443322 34444445555
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582 137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 216 (353)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (353)
+...|++++|.+.++++.+..+ . +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~-----------------------------------~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-E-----------------------------------NGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-C-----------------------------------SHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-C-----------------------------------CHHHHHHHHHHHHHhccHHHH
Confidence 5555555555555555444432 2 334444444455555555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582 217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (353)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+..++.+.|++++|...+
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-------GHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 55555544432 12344444555555555555555555555555430 23445555555555555555555555
Q ss_pred HHHHhcCCCCChhhhHH
Q 018582 297 EILKKAVDDLGVEVFEP 313 (353)
Q Consensus 297 ~~~~~~~~~~~~~~~~~ 313 (353)
+++.+..+ .+..++..
T Consensus 217 ~~~~~~~p-~~~~~~~~ 232 (243)
T 2q7f_A 217 DKAIDIQP-DHMLALHA 232 (243)
T ss_dssp HHHHHHCT-TCHHHHHH
T ss_pred HHHHccCc-chHHHHHH
Confidence 55555554 44444433
No 47
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=7.5e-15 Score=128.28 Aligned_cols=315 Identities=13% Similarity=-0.019 Sum_probs=222.6
Q ss_pred hHHHHHHHHHHHhc-------C-CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCC-CcchHHHHHHHH
Q 018582 2 TEKAEALLEKMKEL-------N-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-----S-IMP-DSYTYNVWMRAL 66 (353)
Q Consensus 2 ~~~A~~~~~~m~~~-------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ll~~~ 66 (353)
+++|++.|+...+. . -+....+|+.+...|...|++++|...+++..+. + ..+ ...++.....++
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence 46677766654321 1 1234568999999999999999999999887652 1 111 234555555555
Q ss_pred Hhc--CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc--
Q 018582 67 AAV--NDISGAERVIEEMKRDGRVAADWTTFSNLASI---YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ-- 139 (353)
Q Consensus 67 ~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 139 (353)
... +++++|...|++..+. .|.+...+..+..+ +...++.++|++.+++..+..+. +..++..+...+..
T Consensus 147 ~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 147 LKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMR 223 (472)
T ss_dssp HHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC
T ss_pred HHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHH
Confidence 543 5789999999999986 34555566555554 44567888999999988876554 56666666555544
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-------
Q 018582 140 --TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE------- 210 (353)
Q Consensus 140 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 210 (353)
.|++++|.+.+++.....+ .+..++..+...+...|++++|...+++..+..+. +..++..+..+|...
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp ------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhH
Confidence 4678899999999888765 46678889999999999999999999999987654 677777777666432
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH--HHH
Q 018582 211 ------------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS--ETI 276 (353)
Q Consensus 211 ------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~ 276 (353)
+.+++|...+++..+.. +.+..++..+...+...|++++|++.|++.++.... +.. ..+
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~------~~~~~~~~ 374 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT------PVAKQLLH 374 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC------HHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC------ChHHHHHH
Confidence 23567888888877764 335678889999999999999999999999987621 221 223
Q ss_pred HHHHH-HHHhcCChhhHHHHHHHHHhc------------------------CCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582 277 RTFMR-HFEQEKDVDGAEGFLEILKKA------------------------VDDLGVEVFEPLIRTYAAAGRTSPVML 329 (353)
Q Consensus 277 ~~l~~-~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~~~~ 329 (353)
..+.. .....|+.++|...+++..+. +| .++.+|..|...|...|+..+++-
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33333 245678899999888877654 34 567889999999999999666553
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=4.7e-16 Score=123.28 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=161.2
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 98 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 98 (353)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence 456678888899999999999999999998853 446778888999999999999999999999987 46678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 178 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (353)
...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999887544 778899999999999999999999999988755 4677888899999999999
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582 179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227 (353)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (353)
++|...++++.+..+ .+..++..+..+|...|++++|...++++.+..
T Consensus 176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999988764 367889999999999999999999999998763
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.8e-15 Score=122.26 Aligned_cols=225 Identities=14% Similarity=0.093 Sum_probs=116.9
Q ss_pred CChhHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582 70 NDISGAERVIEEMKRDGRV--AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY 147 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (353)
|++++|...|+++.+.... +.+..++..+...+...|++++|...|++.....+. +..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555553210 113344555555555556666666555555554332 4555555555555666666666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582 148 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 227 (353)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 227 (353)
+.|++..+..+ .+..++..+..++...|++++|...++++.+..+. .......+..+...|++++|...+.+.....
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 66665555433 23445555555666666666666666665554322 1222223333344566666666665555442
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 228 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 228 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+++...+ .++..+...++.++|.+.+.+....... ..| +...+..+...+.+.|++++|...++++.+..|
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc----ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 2222222 3455555556666666666665544300 000 135566666666666666666666666666554
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.8e-16 Score=128.17 Aligned_cols=248 Identities=13% Similarity=-0.035 Sum_probs=181.5
Q ss_pred HhcCCcchHHHHHHHHHHCCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582 32 AKTGHPEKIPAIIQEMKASSI---MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF 108 (353)
Q Consensus 32 ~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (353)
...|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+. .+.+..++..+...+...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCH
Confidence 345778889999988887531 113557778888888999999999999998886 456788888899999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
++|...|++.....+. +..++..+...|...|++++|.+.|+++.+..+ +.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999988876544 677888888899999999999999998887653 3334444455556778999999999887
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 018582 189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 265 (353)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (353)
..... ++...+. ++..+...++.++|...+.+..+..... +...+..+...|...|++++|...|++..+..
T Consensus 171 ~~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 245 (275)
T 1xnf_A 171 FEKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--- 245 (275)
T ss_dssp HHHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HhcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---
Confidence 76543 3444444 6667777788888888888876542110 14677888888999999999999999998875
Q ss_pred CCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582 266 GGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (353)
|+.. .....++...|++++|.+.+
T Consensus 246 -----p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -----VHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -----CTTC--HHHHHHHHHHHHHHHC----
T ss_pred -----chhH--HHHHHHHHHHHHHHhhHHHH
Confidence 5321 22244566677777776655
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=3.9e-14 Score=123.75 Aligned_cols=311 Identities=11% Similarity=-0.018 Sum_probs=220.0
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHC-----C--CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcC----
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-----S--IMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRDG---- 86 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 86 (353)
.....||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 44667999999999999999999999987542 1 122 34578899999999999999999999876521
Q ss_pred -C-CCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHccCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHhCCC
Q 018582 87 -R-VAADWTTFSNLASIYVEA--GLFEKAERALKELENRNAHRDLSAYQFLITL---YGQTGNLSEVYRIWRSLRLAFPN 159 (353)
Q Consensus 87 -~-~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 159 (353)
. ......++..+..++... +++++|...|++..+..+. ++..+..+... +...++.++|++.+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 0 122355666666666554 5799999999999887654 55566555544 4456788899999998887755
Q ss_pred CChhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 018582 160 TANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 235 (353)
.+..++..+...+.. .+++++|.+.+++.....+. +..++..+...|...|++++|...+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 355566656555544 46788999999998887644 7788999999999999999999999999886422 45566
Q ss_pred HHHHHHHHc-------------------cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582 236 EIFSDYYLR-------------------NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 236 ~~li~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (353)
..+...|.. .+.++.|...+++..+... .+..++..+...+...|++++|...|
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-------NLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-------TTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-------chhhhhhhHHHHHHHhccHHHHHHHH
Confidence 666555432 1346778888888888761 34567888999999999999999999
Q ss_pred HHHHhcCCCCCh--hhhHHHHHH-HHHcCCChHHHHHHHHhCCCccC
Q 018582 297 EILKKAVDDLGV--EVFEPLIRT-YAAAGRTSPVMLRRLKMEKVEVS 340 (353)
Q Consensus 297 ~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~~~~~~m~~~~~~p~ 340 (353)
++..+..+.+.. ..+..+... +.+.|+...++-...+...+.|+
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 999987763322 123333332 33456655555443344444444
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=7.7e-16 Score=131.64 Aligned_cols=301 Identities=14% Similarity=0.040 Sum_probs=227.8
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-----YTYNVWMRALAAVNDISGAERVIEEMKRD----GRVA 89 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 89 (353)
.....+......+...|++++|...|++..+.+ |+. ..+..+...+...|++++|...+++.... +..+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 455567778889999999999999999998863 432 46788889999999999999999987653 2012
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCC--------------------HH
Q 018582 90 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGN--------------------LS 144 (353)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 144 (353)
....++..+...+...|++++|...+++....... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23557788999999999999999999987553211 12 4578888899999999 99
Q ss_pred HHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCChH
Q 018582 145 EVYRIWRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-----TYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 145 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~ 214 (353)
+|.+.+++.... +..| ...++..+...+...|++++|...+++..+... .....++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999886543 1111 134678888999999999999999999764311 112347888999999999999
Q ss_pred HHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCC
Q 018582 215 NAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKD 288 (353)
Q Consensus 215 ~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 288 (353)
+|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+...... ..+ ...++..+...+...|+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCC
Confidence 999999987643111 11 45778888999999999999999999877531100 001 25678888999999999
Q ss_pred hhhHHHHHHHHHhcCC-----CCChhhhHHHHHHHHHcCC
Q 018582 289 VDGAEGFLEILKKAVD-----DLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 289 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~ 323 (353)
+++|...+++..+... .....++..+...+...|+
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 9999999998876421 1335678888889988887
No 53
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=6.7e-14 Score=124.07 Aligned_cols=314 Identities=10% Similarity=0.067 Sum_probs=219.3
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 018582 9 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 88 (353)
Q Consensus 9 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 88 (353)
|+...+..+ -|...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|+++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--- 75 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--- 75 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence 444444442 47789999998 47899999999999999985 3456668999999999999999999999999985
Q ss_pred CCcHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-cCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHH
Q 018582 89 AADWTTFSNLASIY-VEAGLFEKAER----ALKELENR-NAHR-DLSAYQFLITLYGQ---------TGNLSEVYRIWRS 152 (353)
Q Consensus 89 ~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~ 152 (353)
.|+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 46887777777533 45677776665 66666442 4333 56677777776554 6788889888888
Q ss_pred HHHhCCCCC-hhHHHHH---------------------------------------------------------------
Q 018582 153 LRLAFPNTA-NISYLNM--------------------------------------------------------------- 168 (353)
Q Consensus 153 ~~~~~~~~~-~~~~~~l--------------------------------------------------------------- 168 (353)
..+. +..+ ...|...
T Consensus 156 al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 156 GCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 7652 2111 1122111
Q ss_pred --HHHHHhc----CCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHH
Q 018582 169 --IQVLVNL----KDL----PGAEKCFKEWESGCATYDIRVTNVMIGAYAK-------EGRLE-------NAEELKERAR 224 (353)
Q Consensus 169 --~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~ 224 (353)
+...... ++. +.+..+|++.....+ .+...|..++..+.+ .|+++ +|..+|++..
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 1000000 111 244556666666543 367888888888876 68987 9999999998
Q ss_pred hcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 225 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 225 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
+.-.+.+...|..++..+.+.|++++|.++|+++++.. |+ ...|..++..+.+.|+++.|..+|++..+.
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 63123357889999999999999999999999999975 54 258999999999999999999999999987
Q ss_pred CCCCChhhhHHHHHH-HHHcCCC--hHHHHHHHHhCCCccCH
Q 018582 303 VDDLGVEVFEPLIRT-YAAAGRT--SPVMLRRLKMEKVEVSE 341 (353)
Q Consensus 303 ~~~~~~~~~~~l~~~-~~~~g~~--~~~~~~~m~~~~~~p~~ 341 (353)
.+ .+...|...+.. +...|+. +..+++...+ ..|+.
T Consensus 386 ~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~ 424 (530)
T 2ooe_A 386 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDI 424 (530)
T ss_dssp TT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTC
T ss_pred cC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCC
Confidence 65 445555443333 3357774 4445544333 34543
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=1.4e-15 Score=130.48 Aligned_cols=280 Identities=12% Similarity=0.051 Sum_probs=210.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCcH
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-----YTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADW 92 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 92 (353)
..+..+...+...|++++|+..|++..+.+ |+. ..|..+...+...|++++|...+++..+. +..+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778899999999999999998863 443 46788888999999999999999987763 1113345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRN-----AHRDLSAYQFLITLYGQTGN-----------------LSEVYRIW 150 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 150 (353)
.++..+...|...|++++|...+++..... ......++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 677889999999999999999999875531 11235578888899999999 99999998
Q ss_pred HHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHhcCChHHHHHHH
Q 018582 151 RSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----YDIRVTNVMIGAYAKEGRLENAEELK 220 (353)
Q Consensus 151 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~ 220 (353)
++..+. +..+ ...++..+...+...|++++|...+++..+.... ....++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 886442 1111 2247788889999999999999999987653211 11337788899999999999999999
Q ss_pred HHHHhcCCC-----CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHH
Q 018582 221 ERARRRGAD-----PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGF 295 (353)
Q Consensus 221 ~~~~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 295 (353)
++..+.... ....++..+...+...|++++|.+++++......... .......++..+...|.+.|++++|...
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 987753110 1146778888999999999999999999877531000 0001245788888999999999999999
Q ss_pred HHHHHhcCC
Q 018582 296 LEILKKAVD 304 (353)
Q Consensus 296 ~~~~~~~~~ 304 (353)
+++..+...
T Consensus 366 ~~~al~~~~ 374 (411)
T 4a1s_A 366 AEQHLQLAX 374 (411)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 999887543
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.67 E-value=8.5e-15 Score=121.64 Aligned_cols=279 Identities=14% Similarity=0.068 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCcH
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-----SYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADW 92 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 92 (353)
..+......+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...+++..+. +..+...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 445666778889999999999999998853 44 256778888999999999999999887653 2112235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCC--------------------HHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGN--------------------LSEVY 147 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 147 (353)
.++..+...+...|++++|...+++....... ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 67788899999999999999999987543211 12 3477888889999999 99999
Q ss_pred HHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHhcCChHHHH
Q 018582 148 RIWRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-----ATYDIRVTNVMIGAYAKEGRLENAE 217 (353)
Q Consensus 148 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~ 217 (353)
+.+++.... +..+ ...++..+...+...|++++|...+++..+.. ......++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 988876442 2111 23467788888999999999999999876421 1112347788889999999999999
Q ss_pred HHHHHHHhcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582 218 ELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 292 (353)
Q Consensus 218 ~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 292 (353)
..+++..+.... ++ ..++..+...+...|++++|.+.+++..+...... .......++..+...+.+.|++++|
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHH
Confidence 999987643111 11 45677888889999999999999998876531000 0001245778888899999999999
Q ss_pred HHHHHHHHhcC
Q 018582 293 EGFLEILKKAV 303 (353)
Q Consensus 293 ~~~~~~~~~~~ 303 (353)
...+++..+..
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=6.3e-14 Score=106.05 Aligned_cols=168 Identities=14% Similarity=0.096 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 018582 91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ 170 (353)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (353)
+..+|..+...|.+.|++++|+..|++..+..+. +..++..+...|.+.|++++|+..+.......+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 4556666666677777777777777766665443 5666666666667777777777766666655442 4455556666
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582 171 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 250 (353)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 250 (353)
.+...++++.+...+.+.....+. +...+..+...|.+.|++++|++.|++..+..+ .+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 666677777777777766665433 566666677777777777777777777666532 245666677777777777777
Q ss_pred HHHHHHHHHHcC
Q 018582 251 AVDCLEKAIDTG 262 (353)
Q Consensus 251 a~~~~~~~~~~~ 262 (353)
|++.|++.++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 777777776654
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=1.6e-13 Score=112.77 Aligned_cols=220 Identities=14% Similarity=0.081 Sum_probs=176.0
Q ss_pred chHHHHHHHHHHCCCCCCcchHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582 38 EKIPAIIQEMKASSIMPDSYTYNVWMRALA-------AVNDI-------SGAERVIEEMKRDGRVAADWTTFSNLASIYV 103 (353)
Q Consensus 38 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (353)
++|..+|++..... +.+...|..++..+. ..|++ ++|..+|++..+.- .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 57888999988752 446667877777765 35886 89999999999831 3456678899999999
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChhHH
Q 018582 104 EAGLFEKAERALKELENRNAHRDLS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV-NLKDLPGA 181 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 181 (353)
+.|++++|..+|++..+..+. +.. +|..++..+.+.|++++|..+|++..+..+ ++...|........ ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999875433 343 899999999999999999999999987654 34445544433322 37999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCC--ChhhHHHHHHHHHccCChHHHHHHHHHH
Q 018582 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-ADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKA 258 (353)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~ 258 (353)
.++|++..+..+. +...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999877544 78899999999999999999999999999863 344 3567888899999999999999999999
Q ss_pred HHcC
Q 018582 259 IDTG 262 (353)
Q Consensus 259 ~~~~ 262 (353)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9876
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=5.3e-13 Score=109.73 Aligned_cols=221 Identities=11% Similarity=0.019 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHc-cCCCCHHHHHHHHHHH
Q 018582 73 SGAERVIEEMKRDGRVAADWTTFSNLASIYVE-------AGLF-------EKAERALKELENR-NAHRDLSAYQFLITLY 137 (353)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 137 (353)
+.|..+|++.... .+.+...|..++..+.. .|++ ++|..+|++.... .+ .+...|..++..+
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 6788999999986 57788888888887763 5886 8999999999873 43 3677899999999
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hcCChHH
Q 018582 138 GQTGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA-KEGRLEN 215 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 215 (353)
.+.|++++|.++|++..+..+. +.. .|..++..+.+.|++++|..+|++..+..+ .+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999875432 233 789999999999999999999999998764 35566654444432 3699999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHH
Q 018582 216 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAE 293 (353)
Q Consensus 216 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 293 (353)
|..+|++..+..+ -+...|..++..+.+.|++++|..+|++.+.... ..| ....|..++....+.|+.+.|.
T Consensus 188 A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 188 AFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999987632 3678899999999999999999999999999631 114 3678899999999999999999
Q ss_pred HHHHHHHhcCC
Q 018582 294 GFLEILKKAVD 304 (353)
Q Consensus 294 ~~~~~~~~~~~ 304 (353)
.+++++.+..|
T Consensus 262 ~~~~~a~~~~p 272 (308)
T 2ond_A 262 KVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 99999998877
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.3e-14 Score=124.33 Aligned_cols=268 Identities=12% Similarity=0.050 Sum_probs=203.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-----CCCCHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELENRN-----AHRDLS 128 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~ 128 (353)
.+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|...+++..... ......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45556678899999999999999999964 3333 478889999999999999999999875531 122456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLA----FP-NTANISYLNMIQVLVNLKD-----------------LPGAEKCFK 186 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 186 (353)
++..+...|...|++++|...+++.... +. .....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888999999999999999999987654 11 1223477888899999999 999999988
Q ss_pred HHHhc----C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHH
Q 018582 187 EWESG----C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLE 256 (353)
Q Consensus 187 ~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~ 256 (353)
+..+. + ......++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|.+.++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86542 1 1223457888899999999999999999988753111 11 2377888999999999999999999
Q ss_pred HHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhhHHHHHHHHHcCCChHHH
Q 018582 257 KAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-----LGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
+..+..... +.......++..+...+...|++++|...+++..+.... ....++..+...|.+.|+..+++
T Consensus 288 ~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 288 RTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 988763100 000012567888999999999999999999988774321 22458889999999999965544
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=1.1e-14 Score=127.04 Aligned_cols=216 Identities=13% Similarity=0.008 Sum_probs=171.8
Q ss_pred CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 018582 36 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDI-SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA 114 (353)
Q Consensus 36 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (353)
.+++++..++...... +.+...+..+..++...|++ ++|...|++..+. .+.+...+..+..+|.+.|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567777777766542 34566778888888888999 9999999988886 456678888899999999999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------CC
Q 018582 115 LKELENRNAHRDLSAYQFLITLYGQT---------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL--------KD 177 (353)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 177 (353)
|++..+.. |+..++..+...+... |++++|++.|++..+..+ .+...|..+..++... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 99887754 5567888888888888 899999999998888765 3567888888888888 88
Q ss_pred hhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHH
Q 018582 178 LPGAEKCFKEWESGCAT--YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCL 255 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 255 (353)
+++|...|++..+..+. .+...|..+..+|...|++++|...|++..+... .+...+..+...+...|++++|++.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998876531 3778888888999999999999999998887642 25567788888888888888888766
Q ss_pred HHH
Q 018582 256 EKA 258 (353)
Q Consensus 256 ~~~ 258 (353)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=1.3e-13 Score=104.28 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=111.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
++..|..+...+...|++++|...|++..+. .|-+..++..+..+|.+.|++++|...+.......+. +...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 4455666666677777777777777776665 3555666666777777777777777777766655443 555666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (353)
..+...++++.+.+.+.+.....+ .+...+..+..++.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 666677777777777776666544 24556666677777777777777777776665533 5666777777777777777
Q ss_pred HHHHHHHHHHhc
Q 018582 215 NAEELKERARRR 226 (353)
Q Consensus 215 ~a~~~~~~~~~~ 226 (353)
+|...|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.64 E-value=4.3e-14 Score=120.04 Aligned_cols=291 Identities=11% Similarity=0.051 Sum_probs=205.8
Q ss_pred hHHHHHHHHHHHhc--CC--CCCchhHHHHHHHH--HhcCCcchHH-----------HHHHHHHHCCCCCCcch------
Q 018582 2 TEKAEALLEKMKEL--NL--GFSSMPFNSLMTLY--AKTGHPEKIP-----------AIIQEMKASSIMPDSYT------ 58 (353)
Q Consensus 2 ~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~--~~~~~~~~a~-----------~~~~~m~~~~~~p~~~~------ 58 (353)
+++|..+++++.+. .+ .++...|..++..- .-.+.++.+. +.++.+.... .+...
T Consensus 28 ~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~l~~~~ 105 (383)
T 3ulq_A 28 IPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGLLEYYF 105 (383)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhHHHHHH
Confidence 67888988888653 22 13334444444321 1223333333 7777765421 12121
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC------CCHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGR---VAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAH------RDLS 128 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~ 128 (353)
+......+...|++++|...|++..+.-. ..+ ...++..+...|...|+++.|...+++..+.... ....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 22255677889999999999999987411 122 3467889999999999999999999987653211 1245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIR 198 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 198 (353)
+++.+...|...|++++|++.|++..+.... ++ ..++..+..+|...|++++|...+++..+ ...+....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 7888899999999999999999987654211 11 13788899999999999999999999876 33134577
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRR----GADPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP 271 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 271 (353)
++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +. ...
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~-----~~~ 337 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML-----YAD 337 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC-----HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC-----HHH
Confidence 8899999999999999999999987653 111122335667788888998 77777777765 21 113
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 272 SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
....+..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3567888999999999999999999988763
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.64 E-value=4.8e-13 Score=125.00 Aligned_cols=265 Identities=13% Similarity=0.142 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|..+|+.... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5666666666421 1122233322 456666666666533 2355677777777777777777777743
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.+++++...+. . .++
T Consensus 1131 A-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1131 A-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred c-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 2 345556667777777777777777777665543 22223334667777777766433332 1 234
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.. +..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 556666777777777777777777763 367777777777777777777777652 55777777777
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
|...|++..|..+...+. .++..+..++..|.+.|.+++|..+++.....+. -+...|+-|...|++.
T Consensus 1260 cve~~Ef~LA~~cgl~Ii-----------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-aH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHIV-----------VHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKF 1327 (1630)
T ss_pred HhhhhHHHHHHHHHHhhh-----------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-hHhHHHHHHHHHHHhC
Confidence 777777777766654311 4556667888889999999999999988887775 7778888888888775
Q ss_pred CC
Q 018582 322 GR 323 (353)
Q Consensus 322 g~ 323 (353)
.-
T Consensus 1328 ~p 1329 (1630)
T 1xi4_A 1328 KP 1329 (1630)
T ss_pred CH
Confidence 44
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=6.9e-14 Score=119.47 Aligned_cols=271 Identities=14% Similarity=0.050 Sum_probs=204.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----cCC-
Q 018582 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENR----NAH- 124 (353)
Q Consensus 54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 124 (353)
+....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344456677788999999999999999999864 333 357888999999999999999999987442 111
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCC--------------------hh
Q 018582 125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKD--------------------LP 179 (353)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 179 (353)
....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12557888889999999999999999987654211 11 3478888899999999 99
Q ss_pred HHHHHHHHHHhc----C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHccCChH
Q 018582 180 GAEKCFKEWESG----C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMK 249 (353)
Q Consensus 180 ~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~ 249 (353)
+|...+++.... + ......++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998886532 1 112345788889999999999999999998774311 112 237888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-C----ChhhhHHHHHHHHHcCC
Q 018582 250 LAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-L----GVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~ 323 (353)
+|...+++..+...... ..+ ...++..+...+...|++++|...+++..+.... . ...++..+...|.+.|+
T Consensus 245 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999876531000 001 1567888999999999999999999988774321 1 25688899999999999
Q ss_pred ChHHH
Q 018582 324 TSPVM 328 (353)
Q Consensus 324 ~~~~~ 328 (353)
+..++
T Consensus 323 ~~~A~ 327 (406)
T 3sf4_A 323 HDQAM 327 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=3.9e-14 Score=117.63 Aligned_cols=268 Identities=14% Similarity=0.052 Sum_probs=200.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----cCC-CCHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENR----NAH-RDLS 128 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 128 (353)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34555677889999999999999999863 333 467888999999999999999999987542 111 2356
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCC--------------------hhHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKD--------------------LPGAEK 183 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 183 (353)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7888899999999999999999987654211 12 2377888899999999 999999
Q ss_pred HHHHHHhc----C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHccCChHHHHH
Q 018582 184 CFKEWESG----C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMKLAVD 253 (353)
Q Consensus 184 ~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~ 253 (353)
.+++.... + ......++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|.+
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98886532 1 122345778888999999999999999998764311 011 2377888889999999999999
Q ss_pred HHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhhHHHHHHHHHcCCChHHH
Q 018582 254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-----LGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
.+++..+...... .......++..+...+...|++++|...+++..+..+. ....++..+...|.+.|+..+++
T Consensus 245 ~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 245 YYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999876531000 00011567888889999999999999999988764321 12457889999999999966554
No 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=2.4e-12 Score=120.48 Aligned_cols=282 Identities=10% Similarity=0.065 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 81 (353)
+++|.++.++. .+..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.|..
T Consensus 1092 ldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1092 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566655544 35678999999999999999999999653 4778899999999999999999999998
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
.++.. ++....+.++.+|++.++++...... . .++...|..+...|...|++++|..+|...
T Consensus 1160 Ark~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1160 ARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred HHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 88753 44444446999999999988644443 2 346677888999999999999999999984
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 241 (353)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++..
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~y 1289 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINY 1289 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHH
Confidence 48999999999999999999999986 366899999999999999999998776532 356778899999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc--CChhhHHHHHHHHHhcCCC------CChhhhHH
Q 018582 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--KDVDGAEGFLEILKKAVDD------LGVEVFEP 313 (353)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 313 (353)
|.+.|.+++|+.+++..+... .-....|+-+..++++. ++..++.+.|..- .+.+ .+...|.-
T Consensus 1290 Ye~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHH
Confidence 999999999999998887664 13456676676666654 3455555555432 2221 35678999
Q ss_pred HHHHHHHcCCChHHHHHHHHh
Q 018582 314 LIRTYAAAGRTSPVMLRRLKM 334 (353)
Q Consensus 314 l~~~~~~~g~~~~~~~~~m~~ 334 (353)
++-.|.+.|++..|+...|..
T Consensus 1361 lv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHhcccHHHHHHHHHhc
Confidence 999999999988887655554
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=5.4e-15 Score=121.62 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=132.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-------C
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRD-------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-------A 123 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~ 123 (353)
++..+...+...|++++|..+++++.+. . .+....++..+...|...|++++|...+++..... .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4455555556666666666666655542 1 23334455566666666666666666666654321 1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 018582 124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA------FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG----- 191 (353)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 191 (353)
.....++..+...|...|++++|.+.+++..+. +..| ....+..+...+...|++++|...+++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122445566666666666666666666665443 1111 2234566666677777777777777766543
Q ss_pred -C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCChh-------hHHHHHHHHHccCChHHHHHHH
Q 018582 192 -C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-------GADPNAK-------TWEIFSDYYLRNGDMKLAVDCL 255 (353)
Q Consensus 192 -~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~li~~~~~~~~~~~a~~~~ 255 (353)
+ .+....++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1 1223456677777777788888888777776642 1111111 1222233344556666677777
Q ss_pred HHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 256 EKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
....... .....++..+..+|.+.|++++|.+.+++..+..+
T Consensus 268 ~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 268 KACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 7766654 13467888899999999999999999998876543
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=122.91 Aligned_cols=242 Identities=15% Similarity=0.112 Sum_probs=174.5
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHC-------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-------SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD------G 86 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 86 (353)
+..++..+...+...|++++|...|+++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567889999999999999999999998873 22334567888899999999999999999998874 3
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc------C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---
Q 018582 87 RVAADWTTFSNLASIYVEAGLFEKAERALKELENRN------A-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--- 156 (353)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 156 (353)
..+....++..+...|...|++++|...+++..+.. . .....++..+...+...|++++|++.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 123446678899999999999999999999986542 1 224567888999999999999999999998764
Q ss_pred ---CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCC-------cHHHHHHHHHHHHhcCChHHHHH
Q 018582 157 ---FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-------ATY-------DIRVTNVMIGAYAKEGRLENAEE 218 (353)
Q Consensus 157 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~a~~ 218 (353)
+..| ...++..+..++...|++++|...++++.+.. ..+ ....+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 23468888999999999999999999987531 111 11222233334445566667777
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 219 LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 219 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+....... +.+..++..+...|.+.|++++|.+++++..+..
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777766542 2345778899999999999999999999988753
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=8.5e-14 Score=121.32 Aligned_cols=207 Identities=12% Similarity=0.056 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 018582 108 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL-SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 186 (353)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (353)
++++...++......+ .+...+..+...+...|++ ++|++.|++..+..+ .+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666777776655433 4788888999999999999 999999999888765 357789999999999999999999999
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc--------CChH
Q 018582 187 EWESGCATYDIRVTNVMIGAYAKE---------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN--------GDMK 249 (353)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------~~~~ 249 (353)
+..+.. |+...+..+...|... |++++|...|++..+... .+...|..+...|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998875 4568888999999999 999999999999988743 3678889999999888 9999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcc----cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582 250 LAVDCLEKAIDTGRGDGGKWVP----SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 325 (353)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (353)
+|++.|++..+.. | +...|..+..+|...|++++|...|++..+..+ .+...+..+..++...|+..
T Consensus 239 ~A~~~~~~al~~~--------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 239 QALSAYAQAEKVD--------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHC--------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 6 678899999999999999999999999999998 78889999999999888865
Q ss_pred HHH
Q 018582 326 PVM 328 (353)
Q Consensus 326 ~~~ 328 (353)
+++
T Consensus 310 eAi 312 (474)
T 4abn_A 310 SLL 312 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=5.2e-12 Score=106.74 Aligned_cols=276 Identities=12% Similarity=0.045 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHH
Q 018582 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-----TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTT 94 (353)
Q Consensus 24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 94 (353)
+......+...|++++|...+++..... +++.. ++..+...+...|++++|...+++.........+ ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444556778999999999999988753 22221 4566667888899999999999988763211122 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcc----CC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC----Chh
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRN----AH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT----ANI 163 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 163 (353)
+..+...+...|++++|...+++..... .. | ...++..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5678888999999999999999875532 11 2 23466778889999999999999999987654321 224
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-HHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hhh
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD-IRVTN-----VMIGAYAKEGRLENAEELKERARRRGADPN---AKT 234 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~ 234 (353)
++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999999765321211 11121 233457789999999999999876432211 224
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH-HHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
+..+...+...|++++|.+.++.......... ..++. ..+..+..++...|+.++|...+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56778889999999999999998876521000 11222 36677778899999999999999987764
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=6.4e-13 Score=112.80 Aligned_cols=290 Identities=12% Similarity=0.025 Sum_probs=202.6
Q ss_pred HHhcCCcchHHHHHHHHHHC--CCCCCcc--hHHHHHHH--HHhcCChhHHH-----------HHHHHHHHcCCCCCcHH
Q 018582 31 YAKTGHPEKIPAIIQEMKAS--SIMPDSY--TYNVWMRA--LAAVNDISGAE-----------RVIEEMKRDGRVAADWT 93 (353)
Q Consensus 31 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~--~~~~ll~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 93 (353)
+.+.+++++|..+++++.+. .+..|.. .|-.++.. ....++++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~---~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ---ARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT---HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC---CCch
Confidence 45689999999999998764 2323332 33333322 22334444455 7777766532 2222
Q ss_pred HH------HHHHHHHHhcCCHHHHHHHHHHHHHccC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-
Q 018582 94 TF------SNLASIYVEAGLFEKAERALKELENRNA-HR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-T- 160 (353)
Q Consensus 94 ~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~- 160 (353)
.+ ......+...|++++|...+++....-. .+ ...++..+...|...|++++|+..+++..+.... +
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 22 2366778899999999999999865311 12 3467888999999999999999999987654211 1
Q ss_pred ----ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C
Q 018582 161 ----ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-----TYDIRVTNVMIGAYAKEGRLENAEELKERARRR----G 227 (353)
Q Consensus 161 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~ 227 (353)
...++..+..+|...|++++|...+++..+... .....++..+...|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 124788889999999999999999999774311 112357888999999999999999999998762 2
Q ss_pred C-CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCC---hhhHHHHHHHHHhc
Q 018582 228 A-DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKD---VDGAEGFLEILKKA 302 (353)
Q Consensus 228 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 302 (353)
. +....++..+...+...|++++|.+.+++..+..... ..|. ...+..+...+...|+ .++|..++++..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-- 333 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-- 333 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--
Confidence 2 2345678889999999999999999999987752100 0022 2335677788888998 777777776651
Q ss_pred CCCCChhhhHHHHHHHHHcCCChHHH
Q 018582 303 VDDLGVEVFEPLIRTYAAAGRTSPVM 328 (353)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~~~ 328 (353)
........+..+...|.+.|++..++
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~ 359 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKAS 359 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 11134457888999999999965554
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=1e-12 Score=113.79 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCc---chHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-----Chh
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP---EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN-----DIS 73 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~ 73 (353)
+++|+++|+...+.| ++.++..|...|...|++ ++|.+.|++..+. +...+..+...+...+ +++
T Consensus 19 ~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 19 TVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 578888888887765 445555666666677777 8888888887753 5556666666454544 677
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcc----------------------------
Q 018582 74 GAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK---AERALKELENRN---------------------------- 122 (353)
Q Consensus 74 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~---------------------------- 122 (353)
+|...|++..+.| . ++ .+..|...|...+..+. +.+.+......|
T Consensus 92 ~A~~~~~~Aa~~g-~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 92 EAESLLKKAFANG-E-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHTT-C-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHCC-C-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 8888888888765 2 22 34445555554443222 222222221111
Q ss_pred ----CCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc----CChhHHHHHHHHHHhc
Q 018582 123 ----AHRDLSAYQFLITLYGQTG---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL----KDLPGAEKCFKEWESG 191 (353)
Q Consensus 123 ----~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~ 191 (353)
...++.++..|...|...| +.++|++.|++..+.|. ++...+..+...|... +++++|...|++.. .
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~ 245 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P 245 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence 1122335666666666666 66667777766666654 2333334455555443 56667777776665 3
Q ss_pred CCCCcHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-----ChHHHHHHHHHHHHcCC
Q 018582 192 CATYDIRVTNVMIGA-Y--AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-----DMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 192 ~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~ 263 (353)
+ +...+..+... | ...+++++|...|++..+.| +...+..+...|. .| ++++|+++|++.. .
T Consensus 246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-- 315 (452)
T 3e4b_A 246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-- 315 (452)
T ss_dssp G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T--
T ss_pred C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C--
Confidence 2 44455555555 3 34567777777777766654 4555555655555 33 6777777776665 3
Q ss_pred CCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582 264 GDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 320 (353)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (353)
-+...+..|...|.. ..++++|...|++..+.|. +.....|...|..
T Consensus 316 -------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 316 -------REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp -------TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHS
T ss_pred -------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHh
Confidence 344555555555554 3366777777776666543 3445555555553
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.56 E-value=2.5e-12 Score=108.95 Aligned_cols=291 Identities=12% Similarity=0.036 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHhc--CCC--CCchhHHHHHHH--HHhcCCcchHH---------HHHHHHHHCCCCCCc--c--hHHHH
Q 018582 2 TEKAEALLEKMKEL--NLG--FSSMPFNSLMTL--YAKTGHPEKIP---------AIIQEMKASSIMPDS--Y--TYNVW 62 (353)
Q Consensus 2 ~~~A~~~~~~m~~~--~~~--~~~~~~~~ll~~--~~~~~~~~~a~---------~~~~~m~~~~~~p~~--~--~~~~l 62 (353)
+++|.++++++... .+. ++...|-.|+.. ..-.+.+..+. +.++.+.....+.+. . .+...
T Consensus 28 ~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~ 107 (378)
T 3q15_A 28 VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFR 107 (378)
T ss_dssp HHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 57899999987653 221 233444555443 12234444444 777776542211111 1 22334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC------CCHHHHHH
Q 018582 63 MRALAAVNDISGAERVIEEMKRDGRVAA----DWTTFSNLASIYVEAGLFEKAERALKELENRNAH------RDLSAYQF 132 (353)
Q Consensus 63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 132 (353)
...+...|++++|...|++..+.....+ ...++..+...|...|+++.|...+++..+.... ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 4567789999999999999886421122 2457788999999999999999999987553211 12457888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHHH
Q 018582 133 LITLYGQTGNLSEVYRIWRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIRVTNV 202 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 202 (353)
+...|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...+++... ..+. ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 999999999999999999987653 1111 124678889999999999999999999876 4433 4788889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC---C-ChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582 203 MIGAYAKEGRLENAEELKERARRRGAD---P-NAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPSSET 275 (353)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~---p-~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
+...|.+.|++++|...+++..+.... | ....+..+...+...++ +.+|+.++++ .+. .......
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~-----~~~~~~~ 338 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNL-----HAYIEAC 338 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTC-----HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCC-----hhHHHHH
Confidence 999999999999999999998764211 1 23345566666777888 7777777776 221 1123456
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 276 IRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
+..+...|...|++++|...+++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888999999999999999998765
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.56 E-value=2e-12 Score=101.33 Aligned_cols=209 Identities=12% Similarity=0.001 Sum_probs=138.6
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582 89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM 168 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (353)
+.|...+......+.+.|++++|...|++..+..+.++...+..+...+...|++++|++.|++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34556777788888888888888888888877665456677777788888888888888888887766542 55677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh---hHHHH
Q 018582 169 IQVLVNLKDLPGAEKCFKEWESGCATYDI-------RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK---TWEIF 238 (353)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l 238 (353)
..++...|++++|...+++..+..+. +. ..|..+...+...|++++|...|++..+. .|+.. .+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 88888888888888888887776533 44 44666777777778888888888777764 33221 23333
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
...|.. .+..+++++...+. .+...+.... ....+.+++|...+++..+..| .+..+...+..
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~-------~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLAS-------SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTT-------TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhccc-------CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence 444432 33444555555431 2333333332 2334557888888888888887 66666555543
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=1.3e-12 Score=118.53 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 171 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (353)
...++.|...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|++.|++..+..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344444444444444444444444444443322 3444444444444444444444444444443321 33344444444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHH
Q 018582 172 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 251 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 251 (353)
+...|++++|.+.|++..+..+. +...|+.+..+|...|++++|++.|++..+.... +...+..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 44555555555555444444322 4444445555555555555555555554443211 334444455555555555555
Q ss_pred HHHHHHHH
Q 018582 252 VDCLEKAI 259 (353)
Q Consensus 252 ~~~~~~~~ 259 (353)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.53 E-value=3.2e-12 Score=96.43 Aligned_cols=130 Identities=15% Similarity=0.034 Sum_probs=53.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 208 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 208 (353)
++..+...+...|++++|.+.++++.+..+ .+...+..+...+...|++++|.+.++++.+..+ .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 121 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALD 121 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHH
Confidence 333333444444444444444444333321 1233333344444444444444444444433321 13334444444444
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
..|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus 122 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 122 NLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4444444444444444332 113344444444444444444444444444443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=2.5e-12 Score=96.98 Aligned_cols=166 Identities=18% Similarity=0.093 Sum_probs=147.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582 56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 135 (353)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 135 (353)
...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 345777888899999999999999999876 4667888999999999999999999999999876543 7788999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 215 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (353)
.+...|++++|.+.++++....+ .+...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988755 4677888999999999999999999999988764 378899999999999999999
Q ss_pred HHHHHHHHHhc
Q 018582 216 AEELKERARRR 226 (353)
Q Consensus 216 a~~~~~~~~~~ 226 (353)
|...+++..+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998765
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=1.9e-12 Score=117.52 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 137 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (353)
+|+.+..++.+.|++++|+..|++..+. .+-+..++..+..+|.+.|++++|+..|++..+..+. +..+|..+...|
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 4444444444444444444444444443 2333444444444444444444444444444443322 344444444444
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 018582 138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE 217 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (353)
...|++++|++.|++..+..+. +...|..+..++...|++++|.+.|++..+..+. +...+..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 4455555555554444443321 3344444445555555555555555554444322 3444455555555555555554
Q ss_pred HHHHHH
Q 018582 218 ELKERA 223 (353)
Q Consensus 218 ~~~~~~ 223 (353)
+.+++.
T Consensus 166 ~~~~ka 171 (723)
T 4gyw_A 166 ERMKKL 171 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=1.6e-11 Score=103.69 Aligned_cols=261 Identities=13% Similarity=0.004 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHhcCCCCCch----hHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCc----chHHHHHHHHHhcCCh
Q 018582 2 TEKAEALLEKMKELNLGFSSM----PFNSLMTLYAKTGHPEKIPAIIQEMKASSI-MPDS----YTYNVWMRALAAVNDI 72 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~~~~ 72 (353)
+++|.+.++.........+.. +++.+...+...|++++|.+.+++.....- .++. .++..+...+...|++
T Consensus 30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 109 (373)
T 1hz4_A 30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 109 (373)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH
Confidence 578899998877654222222 466777888899999999999998865310 1111 2356677788999999
Q ss_pred hHHHHHHHHHHHcCC---CC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC----CHHHHHHHHHHHHccCC
Q 018582 73 SGAERVIEEMKRDGR---VA--A-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHR----DLSAYQFLITLYGQTGN 142 (353)
Q Consensus 73 ~~a~~~~~~~~~~~~---~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~ 142 (353)
++|...+++..+... .. | ....+..+...+...|++++|...+++........ ...++..+...+...|+
T Consensus 110 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~ 189 (373)
T 1hz4_A 110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 189 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC
Confidence 999999998876310 11 2 34566778899999999999999999986643321 24567888899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCh-hHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCh
Q 018582 143 LSEVYRIWRSLRLAFPNTAN-ISYL-----NMIQVLVNLKDLPGAEKCFKEWESGCATY---DIRVTNVMIGAYAKEGRL 213 (353)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 213 (353)
+++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+..+...+...|++
T Consensus 190 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 269 (373)
T 1hz4_A 190 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 269 (373)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH
Confidence 99999999998765222221 1222 23344779999999999999987644321 133567788899999999
Q ss_pred HHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 214 ENAEELKERARRR----GADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 214 ~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
++|...+++.... |..++. ..+..+...+...|+.++|...+++.....
T Consensus 270 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999987642 211222 356667788889999999999999987753
No 80
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=4.1e-11 Score=103.78 Aligned_cols=273 Identities=16% Similarity=0.120 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcc---hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE---KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 79 (353)
++|++.|+...+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...+...+.++.+....
T Consensus 91 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 455555555555432 224445555554433322 2333333333322 3444555555565556444444332
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHH
Q 018582 80 EEMKRDGRVAADWTTFSNLASIYVEAG---LFEKAERALKELENRNAHRDLSAYQFLITLYGQT----GNLSEVYRIWRS 152 (353)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~ 152 (353)
..+.+.- ...+...+..|...|.+.| +.++|++.|++..+.|.. +...+..+...|... +++++|++.|++
T Consensus 165 ~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 165 ERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 2222211 1223337778999999999 999999999999888754 666667777777665 799999999999
Q ss_pred HHHhCCCCChhHHHHHHHH-H--HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 018582 153 LRLAFPNTANISYLNMIQV-L--VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG-----RLENAEELKERAR 224 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~ 224 (353)
.. . -+...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|...|++..
T Consensus 243 aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 243 IA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred Hc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 86 3 345566666666 4 46899999999999999877 6677788888887 55 9999999999877
Q ss_pred hcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHH
Q 018582 225 RRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFL 296 (353)
Q Consensus 225 ~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 296 (353)
.| +...+..+...|.. ..++++|.++|++..+.| +......|...|.. ..+.++|..++
T Consensus 315 -~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 315 -GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---------QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp -TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---------CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred -CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 43 66777777777766 449999999999999876 23445566666654 46899999999
Q ss_pred HHHHhcCC
Q 018582 297 EILKKAVD 304 (353)
Q Consensus 297 ~~~~~~~~ 304 (353)
+...+.|.
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 99998887
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.50 E-value=2e-12 Score=104.58 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc------C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRN------A-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP- 158 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 158 (353)
..++..+...|...|++++|...+++..... - +....++..+...|...|++++|.+.+++.... +.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 4445555555556666666665555554321 1 112345555566666666666666666655433 11
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc------C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 018582 159 -NTANISYLNMIQVLVNLKDLPGAEKCFKEWESG------C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRR---- 226 (353)
Q Consensus 159 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---- 226 (353)
.....++..+...+...|++++|...+++..+. + .+....++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 112345566666666777777777776665543 1 1223556777778888888888888888777643
Q ss_pred ---CCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 227 ---GADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 227 ---~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
...+.. ..+..+...+...+....+.. +..+...-............++..+...|...|++++|...+++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112222 233333333333333222222 111111100000001123567888999999999999999999987653
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=9.1e-13 Score=106.58 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC------CC-CCCcchHHHHHHHHHhcCChhHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------SI-MPDSYTYNVWMRALAAVNDISGA 75 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~~~~~~a 75 (353)
++|+++++.....+.+....++..+...|...|++++|...+++..+. +- +....++..+..++...|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 344444444443332233455666666666666666666666665442 11 11233455555566666666666
Q ss_pred HHHHHHHHHc------CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------c-CCCCHHHHHHHHHHHHccCC
Q 018582 76 ERVIEEMKRD------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR------N-AHRDLSAYQFLITLYGQTGN 142 (353)
Q Consensus 76 ~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~ 142 (353)
...+++..+. ...+....++..+...|...|++++|...+++.... . .+....++..+...|...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 6666655543 101222444555555666666666666666555432 0 01123445555555555555
Q ss_pred HHHHHHHHHHHH
Q 018582 143 LSEVYRIWRSLR 154 (353)
Q Consensus 143 ~~~a~~~~~~~~ 154 (353)
+++|...+++..
T Consensus 185 ~~~A~~~~~~~l 196 (283)
T 3edt_B 185 YQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=1.7e-11 Score=96.01 Aligned_cols=197 Identities=16% Similarity=0.064 Sum_probs=157.1
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 133 (353)
Q Consensus 54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 133 (353)
.|+..+......+...|++++|...|++..+.. .+++...+..+..++...|++++|+..+++.....+. +..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 456788888999999999999999999999974 2278888888999999999999999999999887654 67789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cHHHHHHHH
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFPNTAN-------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY--DIRVTNVMI 204 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 204 (353)
...|...|++++|++.+++..+..+. +. ..|..+...+...|++++|...|++..+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999887653 34 457888889999999999999999999864 22 356777788
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+|...| ...++++...+ ..+...|.... ....+.+++|+..+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 8876544 34455555543 22344444433 234567899999999999987
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.46 E-value=9.2e-12 Score=101.46 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC---C--ChhHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCC---C--c
Q 018582 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---T--ANISYLNMIQVLVNL-KDLPGAEKCFKEWESGCAT---Y--D 196 (353)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~---~--~ 196 (353)
.+|+.+...|...|++++|+..|++..+.... + -..++..+...|... |++++|...|++..+..+. + .
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34555555555555555555555554332110 0 023566677777775 8888888888776643211 0 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCc
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK------TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 270 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (353)
..++..+...|.+.|++++|...|++..+........ .|..+..++...|++++|...+++..+.... ....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN--FADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCCc
Confidence 3567888889999999999999999988754332221 4677778888999999999999998775411 0000
Q ss_pred ccHHHHHHHHHHHH--hcCChhhHHHHHHHHHhcCC
Q 018582 271 PSSETIRTFMRHFE--QEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 271 ~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~ 304 (353)
.....+..++.++. ..+++++|...|+.+...++
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 01223455566664 34567777777766555443
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=1.3e-11 Score=104.54 Aligned_cols=232 Identities=8% Similarity=-0.054 Sum_probs=174.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCC-CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----cHHHH
Q 018582 26 SLMTLYAKTGHPEKIPAIIQEMKASSI-MPD----SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTF 95 (353)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 95 (353)
.....+...|++++|++.|++..+... .++ ..++..+...+...|+++.|...+++..+.....+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567789999999999999876411 122 34678888999999999999999998876321111 24577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccC----C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----hCCCCChhHH
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNA----H-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISY 165 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 165 (353)
+.+..+|...|++++|...+++..+... . ....++..+...|...|++++|++.+++..+ ..+ ....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHH
Confidence 8899999999999999999998755311 1 1245788889999999999999999999876 333 236678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCC-hhhHHH
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGC----ATYDIRVTNVMIGAYAKEGR---LENAEELKERARRRGADPN-AKTWEI 237 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~ 237 (353)
..+...+.+.|++++|...+++..+.. .+.....+..+...|...++ +.+|...+++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 889999999999999999999987532 12233455666667777788 77777777762 22222 346677
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc
Q 018582 238 FSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
+...|...|++++|.+.|++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999998764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=2.3e-11 Score=99.04 Aligned_cols=236 Identities=9% Similarity=0.021 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc--C-CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582 3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKT--G-HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79 (353)
Q Consensus 3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 79 (353)
.+|.+++.+-.+.- +++...| .+ + +. + ++++|.+.|++. ...+...|++++|...|
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 45677777766542 1222223 22 2 32 2 488888888876 34677899999999999
Q ss_pred HHHHHc----CCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-C----HHHHHHHHHHHHcc-CCHHHHHH
Q 018582 80 EEMKRD----GRVAAD-WTTFSNLASIYVEAGLFEKAERALKELENRNAHR-D----LSAYQFLITLYGQT-GNLSEVYR 148 (353)
Q Consensus 80 ~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~ 148 (353)
.+..+. | .++. ..+|+.+..+|.+.|++++|+..+++........ + ..+++.+...|... |++++|+.
T Consensus 61 ~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~ 139 (292)
T 1qqe_A 61 LKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139 (292)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 987763 2 2222 5688999999999999999999999876532211 1 45788899999996 99999999
Q ss_pred HHHHHHHhCCCC-C----hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHhcCChHHHH
Q 018582 149 IWRSLRLAFPNT-A----NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI------RVTNVMIGAYAKEGRLENAE 217 (353)
Q Consensus 149 ~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~ 217 (353)
.|++..+..+.. + ..++..+...+...|++++|...|++..+..+.... ..|..+..++...|++++|.
T Consensus 140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999976643211 1 346888899999999999999999999876544322 15777888999999999999
Q ss_pred HHHHHHHhcCCCCCh------hhHHHHHHHHH--ccCChHHHHHHHHHHHHcC
Q 018582 218 ELKERARRRGADPNA------KTWEIFSDYYL--RNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 218 ~~~~~~~~~~~~p~~------~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~ 262 (353)
..|++..+. .|+. ..+..++.++. ..+++++|++.|+.+....
T Consensus 220 ~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 220 RTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 999998764 3332 13444556664 4567888888887765543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=2.4e-10 Score=91.63 Aligned_cols=188 Identities=12% Similarity=0.007 Sum_probs=99.8
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 111 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP-NTANISYLNMIQVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 111 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (353)
|+..|+++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666555433 23444455666666666777777776666554443 1244455666666666666666666666665
Q ss_pred hcCC---CCcHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 190 SGCA---TYDIRVTNVMIGAY--AKEG--RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 190 ~~~~---~~~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+... ..+..+...+..++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5421 00233344444442 2223 666666666666543 4543344444556666666666666666555431
Q ss_pred CCCCCCC----cccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 263 RGDGGKW----VPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 263 ~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
..... . ..++.++..+|......|+ .|.++++++.+..|
T Consensus 242 p~~~~-k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 242 YSVEQ-KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHTTT-CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred ccccc-cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 00000 0 1244555455555555554 56666666666655
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=1.7e-10 Score=92.51 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018582 75 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA-HRDLSAYQFLITLYGQTGNLSEVYRIWRSL 153 (353)
Q Consensus 75 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (353)
|...|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666665542 34444555677777777777777777777655543 124556667777777777777777777777
Q ss_pred HHhCC---CCChhHHHHHHHHHH--hcC--ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582 154 RLAFP---NTANISYLNMIQVLV--NLK--DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 154 ~~~~~---~~~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (353)
.+..+ ..+..+...+..++. ..| +..+|..+|+++.+.. |+......++.++.+.|++++|.+.++.+.+
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66532 012444455554422 223 7777777777776543 2322223334467777777777777776554
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=7.3e-11 Score=94.46 Aligned_cols=187 Identities=11% Similarity=-0.007 Sum_probs=123.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-C-CHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH-R-DLSA 129 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~ 129 (353)
+...+......+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+..+. | ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556666667777788888888888877752 333 566677777788888888888888887765432 1 2345
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH
Q 018582 130 YQFLITLYGQ--------TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 201 (353)
Q Consensus 130 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (353)
+..+..++.. .|++++|+..|+++....+. +......... +..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 6666667776 77778888877777766432 1222211110 0000000 112245
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHcc----------CChHHHHHHHHHHHHcC
Q 018582 202 VMIGAYAKEGRLENAEELKERARRRGADP--NAKTWEIFSDYYLRN----------GDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~ 262 (353)
.+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...++++++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 67888999999999999999998763221 234667777777765 88999999999999986
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=1.2e-10 Score=89.77 Aligned_cols=126 Identities=13% Similarity=0.010 Sum_probs=80.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582 133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 212 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (353)
+...|.+.|++++|+..|++..+..+ -+...+..+..++...|++++|...|++..+..+. +..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 66777777777777777777777654 25667777777777777777777777777776543 66677777776655443
Q ss_pred --hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 213 --LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 213 --~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.+.+...+..... ..|....+.....++...|++++|+..|++.++..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3344444544432 12222233344555566778888888888887765
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.34 E-value=4.3e-09 Score=85.21 Aligned_cols=232 Identities=10% Similarity=0.048 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHH----Hcc---CCH
Q 018582 73 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLY----GQT---GNL 143 (353)
Q Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 143 (353)
++|+.+++.++.. .+-+..+|+.--.++...| +++++++.++.+....+. +..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 4555555555554 3444455555555555555 566666666665555443 344444333333 233 455
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC------hHH
Q 018582 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP--GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR------LEN 215 (353)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 215 (353)
++++++++.+.+..++ +-.+|+.-.-.+.+.|.++ ++.+.++++.+..+. |...|+.-...+.+.++ +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666555442 4455555555555555555 666666666655533 55555555444444444 666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH-HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHH
Q 018582 216 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL-AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG 294 (353)
Q Consensus 216 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 294 (353)
+++.++++....+. |...|+.+-..+.+.|+... +.++..++...+.. -..+...+..+...+.+.|+.++|.+
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD----QVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT----EESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66666666655432 55666666666655555333 33454444433200 01355666677777777777777777
Q ss_pred HHHHHHh-cCCCCChhhhHHHH
Q 018582 295 FLEILKK-AVDDLGVEVFEPLI 315 (353)
Q Consensus 295 ~~~~~~~-~~~~~~~~~~~~l~ 315 (353)
+++.+.+ .+| .....|+..+
T Consensus 280 ~~~~l~~~~Dp-ir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNP-IRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCG-GGHHHHHHHH
T ss_pred HHHHHHhccCh-HHHHHHHHHH
Confidence 7777665 455 5555555443
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=1.4e-10 Score=82.28 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 103 (353)
Q Consensus 24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (353)
|..+...+...|++++|.++++++.+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 4444444555555555555555544432 223334444444444555555555555554443 2333444444444455
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
..|++++|.+.++++....+. +..++..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555444443221 334444444444444445444444444433
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.33 E-value=3e-10 Score=90.89 Aligned_cols=187 Identities=13% Similarity=-0.031 Sum_probs=129.5
Q ss_pred CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcHH
Q 018582 19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD----SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA-ADWT 93 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 93 (353)
.+...+..+...+.+.|++++|++.|+++.+.. |+ ...+..+..++.+.|++++|...|+++.+..+.. ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456678888889999999999999999998863 44 4577888899999999999999999999863112 2355
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582 94 TFSNLASIYVE--------AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 165 (353)
Q Consensus 94 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (353)
.+..+..++.. .|++++|...|+++....+. +......+. .+..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 67788889988 99999999999999886544 222222211 11111100 01124
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATY--DIRVTNVMIGAYAKE----------GRLENAEELKERARRR 226 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 226 (353)
..+...+.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 456666777777777777777776553321 234566666666655 7777788777777765
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.33 E-value=1.1e-10 Score=106.38 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=147.4
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582 67 AAVNDISGAERVIEEMK--------RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 138 (353)
Q Consensus 67 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (353)
...|++++|.+.+++.. +. .+.+...+..+...+.+.|++++|...|++..+..+. +...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67899999999999998 53 4666788889999999999999999999999887655 7889999999999
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 018582 139 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE 218 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 218 (353)
..|++++|++.|++..+..+. +...+..+..++.+.|++++ .+.|++..+..+. +...|..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999887653 56788899999999999999 9999999988754 78899999999999999999999
Q ss_pred HHHHHHhcCCCCC-hhhHHHHHHHHHccCC
Q 018582 219 LKERARRRGADPN-AKTWEIFSDYYLRNGD 247 (353)
Q Consensus 219 ~~~~~~~~~~~p~-~~~~~~li~~~~~~~~ 247 (353)
.|++..+. .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99998875 344 5667777777766554
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=4e-10 Score=79.85 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
..+...+...|++++|..+++++....+. +...+..+...+...|++++|...++++....+ .+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHh
Confidence 33444444445555555555444443222 344444444444455555555555555444432 2333444445555555
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 225 (353)
|++++|.+.++++.+..+ .+...+..+...+...|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 2344455555555555555555555555544
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=3.4e-10 Score=87.22 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=87.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
+..+|.+.|++++|...|++..+..+. +..++..+...+...|++++|+..|++..+..+ .+..++..+..++...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 777888888888888888888776554 677788888888888888888888888877655 355677777777655543
Q ss_pred --hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 018582 178 --LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW 235 (353)
Q Consensus 178 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 235 (353)
.+.+...++.... +.|....+.....++...|++++|...|++..+. .|+....
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 3344455554432 2333334444555666678888888888888765 5565433
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=1.9e-11 Score=88.85 Aligned_cols=143 Identities=10% Similarity=0.102 Sum_probs=103.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582 170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 249 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 249 (353)
..+...|++++|.+.++......+. +...+..+...|.+.|++++|.+.|++..+..+. +..+|..+...|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 3444556777777777776654322 4455566778888888888888888888776432 5677888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHH-HHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 250 LAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGF-LEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+|+..|++.++.. | +...+..+...|.+.|++++|.+. +++..+..| .++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 8888888888876 4 467788888888888888776654 577888887 778888877777777664
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.29 E-value=1.1e-10 Score=106.25 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=148.5
Q ss_pred HhcCCcchHHHHHHHHH--------HCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582 32 AKTGHPEKIPAIIQEMK--------ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 103 (353)
Q Consensus 32 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (353)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|...|+++.+. .+.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 43 2445678888899999999999999999999997 5678889999999999
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHH
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 183 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 183 (353)
+.|++++|...|++..+..+. +...|..+...+.+.|++++ ++.|++..+..+ .+...|..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999887665 67889999999999999999 999999988765 366789999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582 184 CFKEWESGCATYDIRVTNVMIGAYAKEGR 212 (353)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 212 (353)
.|++..+..+. +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 99999877643 57778778888766554
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.29 E-value=1.5e-09 Score=84.60 Aligned_cols=188 Identities=9% Similarity=-0.002 Sum_probs=118.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH--HHHHH
Q 018582 56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SAYQF 132 (353)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 132 (353)
...+..+...+...|++++|...|+++.+..+..| ....+..+..+|.+.|++++|+..|+++.+..+.... .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555666777888888888888888887531122 1356677888888888888888888888776544221 24444
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 018582 133 LITLYGQ------------------TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT 194 (353)
Q Consensus 133 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 194 (353)
+..++.. .|++++|+..|+++.+..+. +...+...... ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH------
Confidence 4444443 34566666666666554321 11111111000 0000000
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
......+...|.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123466778899999999999999987632211 2467788899999999999999999988876
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=1.4e-09 Score=84.79 Aligned_cols=187 Identities=17% Similarity=0.122 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh--hHHH
Q 018582 91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISYL 166 (353)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 166 (353)
+...+..+...+.+.|++++|...|+++....+... ..++..+..+|.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677888899999999999999987654322 357788888999999999999999998887654222 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 018582 167 NMIQVLVN------------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 228 (353)
Q Consensus 167 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 228 (353)
.+..++.. .|++++|...|+++.+..+. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 45555543 34455555555555544322 222221111000 000000
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 229 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 229 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
......+...|.+.|++++|+..|+++++.. |+ ...+..+..++.+.|++++|.+.++.+...++
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0011245667888999999999999999886 43 35788889999999999999999999888776
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=1.2e-10 Score=87.20 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=72.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV-LVNLK 176 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 176 (353)
+...+.+.|++++|...|++..+..+. +...+..+...+...|++++|+..+++.....+ +...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 344444445555555555444333222 344444444445555555555555444433222 22111111111 11112
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChHHHHHHH
Q 018582 177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCL 255 (353)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 255 (353)
....+...+++..+..+. +...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222345555555544322 45555556666666666666666666655543222 2335555556666666666666665
Q ss_pred HHHH
Q 018582 256 EKAI 259 (353)
Q Consensus 256 ~~~~ 259 (353)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=7.4e-10 Score=89.83 Aligned_cols=169 Identities=11% Similarity=0.015 Sum_probs=137.9
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh-HHH
Q 018582 88 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SYL 166 (353)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 166 (353)
.+.+...+..+...+.+.|++++|...|++.....+. +..++..+...+...|++++|...++++....+ +.. ...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHH
Confidence 4566677788889999999999999999999887665 778899999999999999999999998866544 333 233
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHcc
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRN 245 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 245 (353)
.....+...++.+.|...+++.....+. +...+..+...+...|++++|...|.++.+..... +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 3334466778888899999998887644 78899999999999999999999999999864331 256788999999999
Q ss_pred CChHHHHHHHHHHHH
Q 018582 246 GDMKLAVDCLEKAID 260 (353)
Q Consensus 246 ~~~~~a~~~~~~~~~ 260 (353)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999998887654
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=1.6e-08 Score=81.97 Aligned_cols=223 Identities=10% Similarity=0.030 Sum_probs=178.6
Q ss_pred HhcCCc-chHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH----H
Q 018582 32 AKTGHP-EKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVN--DISGAERVIEEMKRDGRVAADWTTFSNLASIY----V 103 (353)
Q Consensus 32 ~~~~~~-~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 103 (353)
.+.|.+ ++|+++++.+... .|+. ..|+.--.++...+ ++++++.+++.+... .+-+..+|+.-...+ .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHH
Confidence 344544 6899999999985 3554 46788778888888 999999999999997 466666676554444 4
Q ss_pred hc---CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-
Q 018582 104 EA---GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS--EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD- 177 (353)
Q Consensus 104 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 177 (353)
.. +++++++.+++.+.+..+. +..+|+.-.-.+.+.|.++ ++++.++++.+..+. |-..|+.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 55 7899999999999987765 8889988888888889888 999999999998764 77788877777777776
Q ss_pred -----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChH
Q 018582 178 -----LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN-AEELKERARRRG--ADPNAKTWEIFSDYYLRNGDMK 249 (353)
Q Consensus 178 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~ 249 (353)
++++.+.++++....+. |...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88899999999988755 89999999888888887544 556777665532 1336678889999999999999
Q ss_pred HHHHHHHHHHHc
Q 018582 250 LAVDCLEKAIDT 261 (353)
Q Consensus 250 ~a~~~~~~~~~~ 261 (353)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999873
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.1e-10 Score=84.82 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=48.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHH
Q 018582 69 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 148 (353)
Q Consensus 69 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (353)
.|++++|+..++..... .+.+...+..+...|.+.|++++|++.|++..+..+. +..+|..+...|...|++++|+.
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence 34444444444444332 1222223334444455555555555555544443332 44444444445555555555555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 018582 149 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180 (353)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (353)
.|++..+..+. +..++..+...+.+.|++++
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 55544444321 33344444444444444443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=3.8e-10 Score=84.43 Aligned_cols=161 Identities=14% Similarity=0.005 Sum_probs=94.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-H
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-Y 137 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 137 (353)
+......+...|++++|...|++..+. .+.+...+..+..++.+.|++++|...+++.....+ +...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 444455566666666666666666654 344556666666666666777777666666654433 33222222111 1
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHH
Q 018582 138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENA 216 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a 216 (353)
...+...+|+..+++..+..+ .+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 122223345666666665543 245566667777777777777777777776655432 345666677777777777777
Q ss_pred HHHHHHHH
Q 018582 217 EELKERAR 224 (353)
Q Consensus 217 ~~~~~~~~ 224 (353)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=6.6e-10 Score=90.12 Aligned_cols=168 Identities=10% Similarity=-0.076 Sum_probs=138.5
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH-H
Q 018582 53 MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY-Q 131 (353)
Q Consensus 53 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 131 (353)
+.+...+..+...+...|++++|...|++..+. .+.+...+..+...+.+.|++++|...++++....+ +.... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHH
Confidence 445567777888899999999999999999987 567788899999999999999999999999876544 43332 2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhc
Q 018582 132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKE 210 (353)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 210 (353)
.....+...++.++|...+++.....+ .+...+..+...+...|++++|...+.++.+..+.. +...+..++..|...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 333346677888889999999888765 467788899999999999999999999999876542 377899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 018582 211 GRLENAEELKERARR 225 (353)
Q Consensus 211 g~~~~a~~~~~~~~~ 225 (353)
|+.++|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999887653
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.20 E-value=4.6e-09 Score=81.03 Aligned_cols=176 Identities=12% Similarity=0.037 Sum_probs=114.3
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChhHHHHHHH
Q 018582 111 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK----DLPGAEKCFK 186 (353)
Q Consensus 111 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 186 (353)
|++.|++..+. -++.++..+...|...+++++|++.|++..+.+ +...+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44555555443 245556666666666666666666666665543 33445555555555 4 6666777777
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHc----cCChHHHHHHHHH
Q 018582 187 EWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLR----NGDMKLAVDCLEK 257 (353)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~ 257 (353)
+..+.+ +...+..|...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|+++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 666554 44566666666665 66778888888877766421 015667777777776 7788899999988
Q ss_pred HHHcCCCCCCCCcccHHHHHHHHHHHHhc-C-----ChhhHHHHHHHHHhcCC
Q 018582 258 AIDTGRGDGGKWVPSSETIRTFMRHFEQE-K-----DVDGAEGFLEILKKAVD 304 (353)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 304 (353)
..+.+ .+...+..|...|... | ++++|...|++..+.|.
T Consensus 155 A~~~~--------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLS--------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTS--------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcC--------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88773 3445666777777653 2 78899999988888776
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=8.9e-10 Score=98.49 Aligned_cols=154 Identities=11% Similarity=0.017 Sum_probs=103.8
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582 105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 184 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (353)
.|++++|...+++..+..+. +...|..+...+...|++++|.+.|++..+..+ .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46778888888887665443 567788888888888888888888888777654 3566777788888888888888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc---CChHHHHHHHHHHHHc
Q 018582 185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN---GDMKLAVDCLEKAIDT 261 (353)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 261 (353)
+++..+..+. +...+..+..+|...|++++|.+.|++..+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888776533 677778888888888888888888888777632 2566777777788877 8888888888888877
Q ss_pred C
Q 018582 262 G 262 (353)
Q Consensus 262 ~ 262 (353)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 6
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.19 E-value=1.4e-09 Score=97.21 Aligned_cols=153 Identities=8% Similarity=0.010 Sum_probs=82.5
Q ss_pred CCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 018582 35 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA 114 (353)
Q Consensus 35 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (353)
|++++|.+.|++..+.. +.+...|..+...+...|++++|...|++..+. .+.+...+..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55666666666665532 223455666666666666666666666666664 344556666666666666666666666
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChhHHHHHHHHHHhc
Q 018582 115 LKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---KDLPGAEKCFKEWESG 191 (353)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 191 (353)
+++..+..+. +...+..+...|...|++++|.+.|++..+..+ .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666555433 455666666666666666666666666655543 2345555666666666 6666666666666555
Q ss_pred C
Q 018582 192 C 192 (353)
Q Consensus 192 ~ 192 (353)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=1.1e-09 Score=89.90 Aligned_cols=230 Identities=10% Similarity=0.103 Sum_probs=144.1
Q ss_pred cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 018582 34 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 113 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (353)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 466777888887776531 111 0 00135566666555543 456667788888888
Q ss_pred HHHHHHHccCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CCC--hhHHHHHHHHHHhcCChhHHHH
Q 018582 114 ALKELENRNAH-----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP---NTA--NISYLNMIQVLVNLKDLPGAEK 183 (353)
Q Consensus 114 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~ 183 (353)
.|.+....... .-..+|+.+...|...|++++|+..|++..+... .+. ..++..+..+|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88776442211 1134677778888888888888888887654311 111 2466777778877 88999988
Q ss_pred HHHHHHhcCCC-----CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHccCChHHHHH
Q 018582 184 CFKEWESGCAT-----YDIRVTNVMIGAYAKEGRLENAEELKERARRR----GADPN-AKTWEIFSDYYLRNGDMKLAVD 253 (353)
Q Consensus 184 ~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~ 253 (353)
.|++....... ....+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88886643211 11467788888999999999999999887753 11111 2256666677778899999999
Q ss_pred HHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHH
Q 018582 254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG 294 (353)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 294 (353)
.|++.. .... ............++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~--~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPG--FSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTT--STTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCC--CCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999988 5311 00001123445555555 5667665555
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=1.1e-08 Score=78.97 Aligned_cols=176 Identities=11% Similarity=0.026 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC----CHHHHHHH
Q 018582 39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG----LFEKAERA 114 (353)
Q Consensus 39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 114 (353)
+|++.|++..+.| +...+..+...+...+++++|...|++..+.| +...+..|...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3555555555543 45555555555555666666666666665543 23444445555555 4 56666666
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHh----cCChhHHHHHH
Q 018582 115 LKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVN----LKDLPGAEKCF 185 (353)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 185 (353)
|++..+.+ +..++..|...|.. .+++++|+++|++..+.+.. .+...+..+...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66655432 44455555555555 55666666666665544321 013455555555555 55666666666
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcC
Q 018582 186 KEWESGCATYDIRVTNVMIGAYAKE-G-----RLENAEELKERARRRG 227 (353)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 227 (353)
++..+.+ .+...+..|...|... | ++++|...|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6655541 1233444555555432 2 5666666666665554
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=2.3e-08 Score=89.93 Aligned_cols=233 Identities=9% Similarity=0.007 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHH-HHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582 5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP-AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 83 (353)
Q Consensus 5 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 83 (353)
+..+|++...... .+...|-..+..+...|+.++|. ++|++.... ++.+...|...+...-+.|+++.|.++|+.+.
T Consensus 328 v~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456666665432 45666777777777777777775 777777653 33444455566666777777878887777776
Q ss_pred HcCC--------CCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc-CC
Q 018582 84 RDGR--------VAA------------DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT-GN 142 (353)
Q Consensus 84 ~~~~--------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 142 (353)
.... ..| ...+|...+....+.|+.+.|..+|....+..+......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 5310 012 12356666676677777777777777776641112233333332222233 44
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCChHHHHHHH
Q 018582 143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVMIGAYAKEGRLENAEELK 220 (353)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 220 (353)
.+.|.++|+...+.-+ -+...+...+......|+.+.|..+|++......+ -....|...+..-.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777666522 24445556666666777777777777777765432 23456777777777777777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHH
Q 018582 221 ERARRRGADPNAKTWEIFSDYY 242 (353)
Q Consensus 221 ~~~~~~~~~p~~~~~~~li~~~ 242 (353)
+++.+. .|+......+++-|
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHh--CCCCcHHHHHHHHh
Confidence 777765 34444444454444
No 113
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=1.4e-08 Score=91.44 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=179.4
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018582 39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAE-RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 117 (353)
Q Consensus 39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 117 (353)
.+..+|++.... ++-+...|...+..+...|+.++|. .+|++.... .+.+...+...+...-+.|+++.|.++|+.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355678888775 4556778888888888999999997 999999886 677777788899999999999999999999
Q ss_pred HHHccC---------CCC------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-
Q 018582 118 LENRNA---------HRD------------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL- 175 (353)
Q Consensus 118 ~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 175 (353)
+..... .|+ ...|...+....+.|..+.|..+|....+..+.+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 876421 132 3368888888888999999999999988761222334454433333444
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHccCChHHHHH
Q 018582 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVD 253 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~ 253 (353)
++.+.|.++|+...+.- +.+...+...++.....|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45899999999998874 3467778888998889999999999999998764322 34578888888889999999999
Q ss_pred HHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582 254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHF 283 (353)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (353)
+.+++.+.- |+......++.-|
T Consensus 563 v~~R~~~~~--------P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEKF--------PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHS--------TTCCHHHHHHHHT
T ss_pred HHHHHHHhC--------CCCcHHHHHHHHh
Confidence 999999986 6655555555554
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=5.6e-09 Score=85.57 Aligned_cols=225 Identities=14% Similarity=0.069 Sum_probs=157.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY 147 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (353)
..|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888999888887752 221 0 11157888888887765 45677889999999
Q ss_pred HHHHHHHHhCCC---C--ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC--cHHHHHHHHHHHHhcCChHHHH
Q 018582 148 RIWRSLRLAFPN---T--ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC---ATY--DIRVTNVMIGAYAKEGRLENAE 217 (353)
Q Consensus 148 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~li~~~~~~g~~~~a~ 217 (353)
..|.+..+.... + -..+|..+..+|...|++++|...+++..... -.+ -..+++.+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999987554211 1 13478888999999999999999999876421 112 24677888899988 9999999
Q ss_pred HHHHHHHhcCCCC-----ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhh
Q 018582 218 ELKERARRRGADP-----NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDG 291 (353)
Q Consensus 218 ~~~~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 291 (353)
..|++..+..... ...++..+...|.+.|++++|++.|++..+...... ..+. ...+..+..++...|++++
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999877531110 145788889999999999999999999887531000 0111 2366677778888899999
Q ss_pred HHHHHHHHHhcCCCCC-h---hhhHHHHHHHHHcCC
Q 018582 292 AEGFLEILKKAVDDLG-V---EVFEPLIRTYAAAGR 323 (353)
Q Consensus 292 a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~ 323 (353)
|...|++.. ..+... . .....++.++ ..|+
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC
Confidence 999999998 655211 1 1344455555 4454
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=1.2e-08 Score=78.69 Aligned_cols=130 Identities=9% Similarity=-0.006 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (353)
.+..+...+...|++++|++.|++.. .|+...|..+..++...|++++|...|++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 45566777788888888888887663 567778888888888888888888888888886 466777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582 103 VEAGLFEKAERALKELENRNAHR---------------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP 158 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (353)
...|++++|...|++..+..+.. ...++..+...|...|++++|.+.|++..+..+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 88888888888888887754321 126777788888888888888888888776654
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.07 E-value=1.9e-07 Score=76.45 Aligned_cols=240 Identities=11% Similarity=0.046 Sum_probs=133.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc-C-CHHHH
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQT-G-NLSEV 146 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a 146 (353)
+..++|+++++.+... .+-+..+|+.--..+...| .+++++..++.+....++ +..+|+.-...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 3344566666666654 3445555555555555555 366666666666655444 555555554444444 4 55666
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC------
Q 018582 147 YRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP--------GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR------ 212 (353)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 212 (353)
+++++.+.+..++ |-.+|+.-.-.+.+.+.++ ++.+.++++.+..+. |...|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 6666666554432 4445544444444444444 666666666665543 66666666665555554
Q ss_pred -hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh--------------------HHHHHHHHHHHHcCCCCCCCCcc
Q 018582 213 -LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM--------------------KLAVDCLEKAIDTGRGDGGKWVP 271 (353)
Q Consensus 213 -~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~~~~~~~~~~ 271 (353)
++++++.+++.....+. |...|+.+-..+.+.|+. ....+....+..... +.....+
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL-PEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC-CSSCCSC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc-ccccCCC
Confidence 56677777666665322 556666555555544443 122222222221110 0011236
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCChhhhHHHHHH
Q 018582 272 SSETIRTFMRHFEQEKDVDGAEGFLEILK-KAVDDLGVEVFEPLIRT 317 (353)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~ 317 (353)
+...+..++..|...|+.++|.++++.+. +.++ ....-|+..+..
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp-ir~~yw~~~~~~ 346 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ-MRAGYWEFRRRE 346 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG-GGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh-HHHHHHHHHHHh
Confidence 78889999999999999999999999987 4455 555566655443
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=4.6e-08 Score=79.52 Aligned_cols=165 Identities=8% Similarity=-0.053 Sum_probs=109.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHH
Q 018582 97 NLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYL 166 (353)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 166 (353)
..+..+...|++++|...+++....... |+ ...+..+...+...|++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466777788888888888877653221 22 113334666677777888888888887764322 22 12577
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh----c-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-hhhH
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEWES----G-CAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRR----GADPN-AKTW 235 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 235 (353)
.+..+|...|++++|...++++.+ . +.. ....++..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 788888888888888888887763 1 111 12346777888888888888888888876542 11122 4577
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHHHHc
Q 018582 236 EIFSDYYLRNGD-MKLAVDCLEKAIDT 261 (353)
Q Consensus 236 ~~li~~~~~~~~-~~~a~~~~~~~~~~ 261 (353)
..+...+.+.|+ +++|.+.+++....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 778888888884 58888888877654
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=8.1e-08 Score=78.07 Aligned_cols=163 Identities=10% Similarity=-0.037 Sum_probs=123.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHH
Q 018582 62 WMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQF 132 (353)
Q Consensus 62 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 132 (353)
.+..+...|++++|..++++..+.....|+. ..+..+...+...|++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667888999999999999998853233442 23445777788888999999999999874322 22 336899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHh-----CCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-cHHHHH
Q 018582 133 LITLYGQTGNLSEVYRIWRSLRLA-----FPNTA-NISYLNMIQVLVNLKDLPGAEKCFKEWESG----CATY-DIRVTN 201 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 201 (353)
+...|...|++++|+..|++..+. +..+. ..++..+...|.+.|++++|...+++..+. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998742 11111 237788999999999999999999987642 2222 267888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 018582 202 VMIGAYAKEGR-LENAEELKERAR 224 (353)
Q Consensus 202 ~li~~~~~~g~-~~~a~~~~~~~~ 224 (353)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888755
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=1.1e-07 Score=77.34 Aligned_cols=172 Identities=9% Similarity=-0.002 Sum_probs=120.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCc--HH
Q 018582 129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCA---TYD--IR 198 (353)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 198 (353)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455666777788888888888776665332111 1233455667778889999998888775321 111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH---hcCC-CC--ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERAR---RRGA-DP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS 272 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (353)
+++.+...|...|++++|...|++.. +... .+ ...++..+...|...|++++|++++++.++..... .....-
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CcHHHH
Confidence 88889999999999999999999877 2211 11 12578888999999999999999999987653100 000012
Q ss_pred HHHHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 018582 273 SETIRTFMRHFEQEKDVDGA-EGFLEILKK 301 (353)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 301 (353)
..++..+..+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67888999999999999999 777877654
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=1.2e-08 Score=71.54 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 276 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
...+......|.+.|++++|++.|++..+..+ .+...|..+..+|.+.|++++|++.+++.++.+. .+...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-------KFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-------hhhHHH
Confidence 34556666777777777777777777776532 2566777777777777777777777777777651 346677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
..+..++...|++++|.+.|++..+.+| .+...+..|..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~~ 123 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDP-SNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHH
Confidence 7777777777777777777777777777 66666665544
No 121
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.04 E-value=9.2e-07 Score=72.11 Aligned_cols=198 Identities=9% Similarity=-0.007 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hhHHHHHH
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTG--NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD-LPGAEKCF 185 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 185 (353)
++++.+++.+....+. +..+|+.-...+...+ .+++++++++.+.+..+. |-.+|+.-.-.+...|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4444444444443333 4444444443444434 244555555555444332 34444444444444444 24455555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc------
Q 018582 186 KEWESGCATYDIRVTNVMIGAYAKE--------------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN------ 245 (353)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 245 (353)
+++.+..+. |...|+.....+.+. +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 555544433 444444443333332 3456677777776665322 555665444444333
Q ss_pred -----CChHHHHHHHHHHHHcCCCCCCCCcccH-HHHHHHH---HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 246 -----GDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFM---RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 246 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
+.++++++.++++.+.. |+. ..+..++ ......|..+++...+.++.+.+| ....-|.-+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp-~r~~~y~d~~~ 317 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRS 317 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc-chhhHHHHHHH
Confidence 35788899999999876 543 2222222 222346777888999999999988 77777777665
Q ss_pred HHH
Q 018582 317 TYA 319 (353)
Q Consensus 317 ~~~ 319 (353)
.+.
T Consensus 318 ~~~ 320 (331)
T 3dss_A 318 KFL 320 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=5.8e-08 Score=74.78 Aligned_cols=126 Identities=15% Similarity=0.048 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
..+...+...|++++|...|++.. .|+..+|..+...|...|++++|++.|++.....+ .+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 345555666666666666666552 34556666666666666666666666666665543 2445666666666666
Q ss_pred CChhHHHHHHHHHHhcCCC---------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 176 KDLPGAEKCFKEWESGCAT---------------YDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
|++++|...+++..+..+. .....+..+..+|...|++++|...|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 6777776666666654322 12266777778888888888888888887765
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.03 E-value=1.7e-06 Score=75.51 Aligned_cols=303 Identities=8% Similarity=-0.000 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC-cchHHHHHHHHHHC-CCCC-CcchHHHHHHHHH----hcCChhH
Q 018582 2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGH-PEKIPAIIQEMKAS-SIMP-DSYTYNVWMRALA----AVNDISG 74 (353)
Q Consensus 2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~----~~~~~~~ 74 (353)
++.|..+|++....- |++..|...+....+.+. .+....+|+..... |..| +...|...+..+. ..++.+.
T Consensus 30 ~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 30 YRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 577888999988743 788999998888777663 46677888887764 4333 4556666665543 2456778
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHH--------------------------------------------HHHh--cCC-
Q 018582 75 AERVIEEMKRDGRVAADWTTFSNLAS--------------------------------------------IYVE--AGL- 107 (353)
Q Consensus 75 a~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------~~~~--~~~- 107 (353)
+..+|++.+... ...-...|..... .|+. .++
T Consensus 108 vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 108 IRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 888998888732 1111111111111 0000 011
Q ss_pred --------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582 108 --------FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 179 (353)
Q Consensus 108 --------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (353)
.+.+..+|+++....+. +...|...+..+.+.|+.++|..+|++.... + .+...+. .|....+.+
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~ 259 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEE 259 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCT
T ss_pred ccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchh
Confidence 22344566666554332 4566666677777777777787777777766 2 2222221 122221222
Q ss_pred HHHHHHHHHHhcC------------CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc-cC
Q 018582 180 GAEKCFKEWESGC------------ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR-NG 246 (353)
Q Consensus 180 ~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~ 246 (353)
+. ++.+.+.- ......+|...+....+.++.+.|..+|++. .. ...+...|......-.. .+
T Consensus 260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHC
T ss_pred HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCC
Confidence 21 22222110 0112245666667776778899999999988 32 12233444322222222 33
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--
Q 018582 247 DMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR-- 323 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 323 (353)
+.+.|..+|+...+.. |+ +..+...+....+.|+.+.|..+|+++ . .....|...+.--...|+
T Consensus 335 d~~~ar~ife~al~~~--------~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~-k~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH--------PDSTLLKEEFFLFLLRIGDEENARALFKRL----E-KTSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp CSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----C-CBHHHHHHHHHHHHHHSCHH
T ss_pred ChHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----H-HHHHHHHHHHHHHHHCCCHH
Confidence 6999999999998874 33 455666777778889999999999986 2 457788888887788888
Q ss_pred ChHHHHHHH
Q 018582 324 TSPVMLRRL 332 (353)
Q Consensus 324 ~~~~~~~~m 332 (353)
.+.+++++.
T Consensus 402 ~~r~v~~~~ 410 (493)
T 2uy1_A 402 LFRELVDQK 410 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334555443
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=5.6e-07 Score=73.71 Aligned_cols=226 Identities=11% Similarity=0.070 Sum_probs=169.8
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc-
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVN-DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA- 105 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 105 (353)
....+.+..++|+++++++...+ |+ ..+|+.--.++...+ ++++++.+++.+... .+-+..+|+.-...+.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc
Confidence 33444556678999999999854 54 446777777777788 599999999999987 677888888877777776
Q ss_pred C-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 018582 106 G-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS--------EVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 106 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (353)
+ ++++++++++.+.+..+. +..+|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence 6 889999999999887655 7888877666666666666 89999999998876 47788888888888877
Q ss_pred C-------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHhcC--
Q 018582 177 D-------LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL--------------------ENAEELKERARRRG-- 227 (353)
Q Consensus 177 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-- 227 (353)
. ++++.+.+++.....+. |...|+-+-..+.+.|+. ........++...+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 6 67888899888887755 888888877777776654 23333333333221
Q ss_pred ---CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 228 ---ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 228 ---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
-.+....+..+++.|...|+.++|.++++.+.+.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1346677888999999999999999999998755
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=3.3e-08 Score=68.68 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 276 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..+++++.+... .+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------ccHHHH
Confidence 4566666677777777777777777766553 22456666777777777777777777777776641 345666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 321 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (353)
..+...+...|++++|...++++.+..+ .+...+..+...+.+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhc
Confidence 7777777777777777777777777666 5666666666665544
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=2.8e-08 Score=69.59 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 174 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (353)
+......|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++|++.|++..+..+ .+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence 333444444444444444444444433322 344444444444444444444444444443322 123334444444444
Q ss_pred cCChhHHHHHHHHHHhc
Q 018582 175 LKDLPGAEKCFKEWESG 191 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (353)
.|++++|.+.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 44444444444444433
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=4e-08 Score=69.23 Aligned_cols=119 Identities=15% Similarity=0.025 Sum_probs=82.7
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582 195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 274 (353)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 274 (353)
.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+... .+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-------TFIK 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------TCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CchH
Confidence 355666677777777777777777777776653 22556677777777777777777777777777641 3456
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (353)
.+..+..++.+.|++++|.+.+++..+..+ .+...+..+..++.+.|
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 677777777777777777777777777666 56666777777666655
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=8.3e-08 Score=70.52 Aligned_cols=95 Identities=13% Similarity=-0.029 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 174 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (353)
+..+...+...|++++|...|++.....+. +..++..+...+...|++++|.+.+++.....+ .+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 334444445555555555555554443322 344444455555555555555555555444432 233344444444455
Q ss_pred cCChhHHHHHHHHHHhc
Q 018582 175 LKDLPGAEKCFKEWESG 191 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (353)
.|++++|...+++..+.
T Consensus 94 ~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 55555555555544443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=1.3e-07 Score=76.82 Aligned_cols=170 Identities=8% Similarity=-0.045 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC---CC--
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---TA-- 161 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-- 161 (353)
...+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|+..+++....... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44555678888899999999999988776533311 123444666778889999999999988754221 11
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHH---hcCCC-C--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCC-
Q 018582 162 NISYLNMIQVLVNLKDLPGAEKCFKEWE---SGCAT-Y--DIRVTNVMIGAYAKEGRLENAEELKERARRRG----ADP- 230 (353)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p- 230 (353)
..+|..+...|...|++++|...+++.. +.... + ...++..+...|...|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3478889999999999999999999976 22211 1 22588889999999999999999999876431 111
Q ss_pred ChhhHHHHHHHHHccCChHHH-HHHHHHHHHc
Q 018582 231 NAKTWEIFSDYYLRNGDMKLA-VDCLEKAIDT 261 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~ 261 (353)
-..+|..+...|...|++++| ...+++....
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 156788889999999999999 7778776543
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.96 E-value=1.6e-08 Score=73.10 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 174 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (353)
+..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|+..|++.....+. +...|..+..++..
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 333444444444444444444444433322 3334444444444444444444444444433321 23333344444444
Q ss_pred cCChhHHHHHHHHHHh
Q 018582 175 LKDLPGAEKCFKEWES 190 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~ 190 (353)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444433
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.95 E-value=7.8e-09 Score=83.51 Aligned_cols=98 Identities=8% Similarity=-0.090 Sum_probs=59.1
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...+++..+. .+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34455566666666666666666666666532 224455556666666666666666666666654 344555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 018582 100 SIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~ 120 (353)
.+|...|++++|...|++..+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666544
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=1e-07 Score=70.00 Aligned_cols=127 Identities=9% Similarity=0.029 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 137 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (353)
.+..+...+...|++++|...|++..+. .+.+..++..+..++...|++++|...+++.....+. +..++..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3445555566666666666666666664 3445566666666666666777776666666654432 455666666666
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChhHHHHHHHHH
Q 018582 138 GQTGNLSEVYRIWRSLRLAFPNTANISYL--NMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
...|++++|...|++.....+. +...+. ..+..+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6677777777777666655432 223332 2222344555556655555543
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=1.2e-07 Score=65.73 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
..+...+...|++++|.+.++++....+. +..++..+...+...|++++|...++++....+ .+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHh
Confidence 33334444444444444444444332211 233333344444444444444444444333322 1223333333334444
Q ss_pred CChhHHHHHHHHHH
Q 018582 176 KDLPGAEKCFKEWE 189 (353)
Q Consensus 176 ~~~~~a~~~~~~~~ 189 (353)
|++++|...++++.
T Consensus 91 ~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 91 GDYDEAIEYYQKAL 104 (125)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444333
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=1.8e-08 Score=72.83 Aligned_cols=124 Identities=10% Similarity=-0.066 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (353)
....+.+.+...+.+.++++ +.| +...+..+...+.+.|++++|...|+++... .|.+...|..+..+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~ 79 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAI 79 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34455555554444444422 223 3446777888899999999999999999987 56778889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP 158 (353)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (353)
|...|++++|+..|++.....+. +..+|..+..+|...|++++|...|++..+..+
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999887665 678899999999999999999999999888754
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.93 E-value=8.8e-08 Score=67.09 Aligned_cols=119 Identities=13% Similarity=-0.037 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 275 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+... .+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------AYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------cCHHH
Confidence 44556666667777777777777777766553 22456666677777777777777777777776641 23566
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 276 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+..+...+...|++++|...+++..+..+ .+...+..+..++.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 67777777777777777777777777766 566677777777766665
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.93 E-value=4.7e-09 Score=87.08 Aligned_cols=151 Identities=10% Similarity=0.001 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--------------HHHHHHHHH
Q 018582 70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--------------LSAYQFLIT 135 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 135 (353)
+++++|...++..... .+.+...+..+...|.+.|++++|...|++.....+... ..+|..+..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444432 223455667777778888888888888887776544322 356666666
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 215 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 215 (353)
+|.+.|++++|+..+++..+..+ .+...|..+..++...|++++|...|++..+..+. +...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666543 24556666666666677777777777666665433 55566666666666666666
Q ss_pred H-HHHHHHHH
Q 018582 216 A-EELKERAR 224 (353)
Q Consensus 216 a-~~~~~~~~ 224 (353)
| ...|..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5 33444443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.92 E-value=7.6e-08 Score=67.43 Aligned_cols=115 Identities=14% Similarity=0.004 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 173 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (353)
.+..+...+...|++++|...+++.....+. +...+..+...+...|++++|.+.+++.....+ .+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence 3444444444455555555555444433221 344444444444444555555544444444322 12334444444444
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582 174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 211 (353)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 211 (353)
..|++++|...+++..+..+. +...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 444444444444444443321 3334444444444333
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.91 E-value=1e-07 Score=67.08 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 172 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (353)
..+..+...+.+.|++++|...|++.....+. +..++..+...+...|++++|++.+++..+..+ .+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 33444444444444444444444444433221 334444444444444444444444444444322 1233344444444
Q ss_pred HhcCChhHHHHHHHHHHh
Q 018582 173 VNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~ 190 (353)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444443
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.91 E-value=3.6e-08 Score=75.22 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=36.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc----C-CCCHHHHHHHHHHHHccCC
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN----A-HRDLSAYQFLITLYGQTGN 142 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~ 142 (353)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..... . .....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345555555533333221 12334445555555555555555555555543310 0 0122334444445555555
Q ss_pred HHHHHHHHHHH
Q 018582 143 LSEVYRIWRSL 153 (353)
Q Consensus 143 ~~~a~~~~~~~ 153 (353)
+++|.+.+++.
T Consensus 82 ~~~A~~~~~~a 92 (203)
T 3gw4_A 82 WDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.90 E-value=1e-08 Score=82.87 Aligned_cols=95 Identities=8% Similarity=-0.059 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 172 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (353)
..+..+...+.+.|++++|...|++.....+. +...|..+...|.+.|++++|+..+++..+..+ .+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 33444444444555555555555544443322 344444444555555555555555554443322 1333444444555
Q ss_pred HhcCChhHHHHHHHHHH
Q 018582 173 VNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~ 189 (353)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555444
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=2.8e-08 Score=74.18 Aligned_cols=123 Identities=13% Similarity=0.153 Sum_probs=80.2
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHhcCCH--
Q 018582 32 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI-YVEAGLF-- 108 (353)
Q Consensus 32 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 108 (353)
...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 44567777777777766643 334566677777777777777777777777765 34556666666666 6677776
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582 109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP 158 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (353)
++|...+++.....+. +...+..+...+...|++++|...|++..+..+
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7777777777665443 566667777777777777777777777766543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=4.2e-08 Score=73.19 Aligned_cols=120 Identities=8% Similarity=0.049 Sum_probs=56.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHccCCH--H
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YGQTGNL--S 144 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 144 (353)
..|++++|...++...+. .+.+...+..+...|...|++++|...|++.....+. +...+..+... +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 445555555555555554 3344455555555555555555555555555444332 34444444444 4445554 5
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582 145 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG 191 (353)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (353)
+|...+++.....+ .+...+..+..++...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555444432 12334444444444444555554444444443
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=2.6e-08 Score=71.96 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 275 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
+...+..+...+...|++++|...|++...... .+...|..+..+|...|++++|++.|++.+.... .+...
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------~~~~~ 91 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-------XEPRF 91 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCTHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCchH
Confidence 455566666677777777777777777766532 2556666677777777777777777777777651 24566
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 276 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+..+..++...|++++|...|++..+..+
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 66677777777777777777777776655
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=3.9e-08 Score=75.03 Aligned_cols=158 Identities=16% Similarity=0.079 Sum_probs=117.0
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh----CCC-CChhHHHHHHHHHHhcCC
Q 018582 103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----FPN-TANISYLNMIQVLVNLKD 177 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 177 (353)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996655543 23345778899999999999999999999987652 111 223467888899999999
Q ss_pred hhHHHHHHHHHHhc----CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCC--hhhHHHHHHHHHccC
Q 018582 178 LPGAEKCFKEWESG----CAT--YDIRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPN--AKTWEIFSDYYLRNG 246 (353)
Q Consensus 178 ~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~--~~~~~~li~~~~~~~ 246 (353)
+++|...+++.... +.. .....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987643 212 234567888999999999999999999876421 1111 234577888899999
Q ss_pred ChHHHHHHHHHHHHc
Q 018582 247 DMKLAVDCLEKAIDT 261 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~ 261 (353)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887765
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=5e-08 Score=70.44 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582 92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 171 (353)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (353)
...+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|+..|++.....+ .+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 334444455555555555555555555444332 444455555555555555555555555544433 133444445555
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 018582 172 LVNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~ 190 (353)
+...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443
No 146
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=1.8e-06 Score=75.35 Aligned_cols=84 Identities=7% Similarity=-0.023 Sum_probs=63.1
Q ss_pred CCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHH----hcCCH
Q 018582 35 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND-ISGAERVIEEMKRD-GRVAADWTTFSNLASIYV----EAGLF 108 (353)
Q Consensus 35 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~~~~ 108 (353)
|+++.+..+|++.... .|+...|...+....+.++ .+....+|+..... |..+.+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999884 4799999999988777664 45677888887764 323456777777777654 34678
Q ss_pred HHHHHHHHHHHH
Q 018582 109 EKAERALKELEN 120 (353)
Q Consensus 109 ~~a~~~~~~~~~ 120 (353)
+.+.++|++...
T Consensus 106 ~~vR~iy~rAL~ 117 (493)
T 2uy1_A 106 EKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 889999999876
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.86 E-value=5.6e-08 Score=77.01 Aligned_cols=126 Identities=13% Similarity=-0.082 Sum_probs=54.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcC
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD--IRVTNVMIGAYAKEG 211 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 211 (353)
...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...|
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 344444455555555554443322 222133333334445555555555554332211 110 123444445555555
Q ss_pred ChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 212 RLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555555443211122 1233334444455555555555555555544
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=2.1e-07 Score=73.72 Aligned_cols=198 Identities=10% Similarity=-0.035 Sum_probs=141.2
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHHHHhCCCCC---------------
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFL-------ITLYGQTGNLSEVYRIWRSLRLAFPNTA--------------- 161 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 161 (353)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888888888888776554 56677666 3445454455555544444322 1111
Q ss_pred -------hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--h
Q 018582 162 -------NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--A 232 (353)
Q Consensus 162 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~ 232 (353)
..........+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345677888999999999999998876532 33 66666778999999999999998655431 121 2
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582 233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (353)
..+..+..++...|++++|+..|++....... | ..........++.+.|+.++|...|+++...+| . ...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~------P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P-~-~~~ 243 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAG------EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP-E-PKV 243 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT------TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC-C-HHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-c-HHH
Confidence 36778889999999999999999998854311 3 345677778889999999999999999999887 3 665
Q ss_pred hHHHH
Q 018582 311 FEPLI 315 (353)
Q Consensus 311 ~~~l~ 315 (353)
+..|.
T Consensus 244 ~~aL~ 248 (282)
T 4f3v_A 244 AAALK 248 (282)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55553
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.83 E-value=1.2e-05 Score=65.66 Aligned_cols=231 Identities=10% Similarity=0.031 Sum_probs=169.3
Q ss_pred hhHHHHHHH---HHhcCCcc-hHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCC----------hhHHHHHHHHHHHcC
Q 018582 22 MPFNSLMTL---YAKTGHPE-KIPAIIQEMKASSIMPDSY-TYNVWMRALAAVND----------ISGAERVIEEMKRDG 86 (353)
Q Consensus 22 ~~~~~ll~~---~~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~ 86 (353)
..|..+... ..+.|.++ +|+++++.+... .|+.. +|+.--.++...+. +++++.+++.+...
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~- 103 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV- 103 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-
Confidence 445555443 34567766 799999999985 45544 45554444333332 67899999999987
Q ss_pred CCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCCCChh
Q 018582 87 RVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN-LSEVYRIWRSLRLAFPNTANI 163 (353)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 163 (353)
.+-+..+|+.-.-.+.+.+ .+++++.+++.+.+..+. +..+|+.-.-.+...|. ++++++.++.+.+..+ -|..
T Consensus 104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~S 180 (331)
T 3dss_A 104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYS 180 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHH
T ss_pred -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHH
Confidence 6778889888877787888 489999999999988765 88888888888888888 5999999999998876 4777
Q ss_pred HHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-----------CChHHHHH
Q 018582 164 SYLNMIQVLVNL--------------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-----------GRLENAEE 218 (353)
Q Consensus 164 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~ 218 (353)
.|+.....+.+. +.++++.+.+.......+. |...|+-+-..+.+. +.++++++
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 777776666655 4477889999998887655 888887655555554 45789999
Q ss_pred HHHHHHhcCCCCChhhHHHHHH-----HHHccCChHHHHHHHHHHHHcC
Q 018582 219 LKERARRRGADPNAKTWEIFSD-----YYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 219 ~~~~~~~~~~~p~~~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
.++++.+. .||. .|..+.. .....+..+++...+.++.+.+
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 99999986 4554 4433222 2224677888999999999877
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.9e-07 Score=65.26 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 276 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|++.+++.++... .+...+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CcHHHH
Confidence 3455566666777777777777777766653 22556677777777777777777777777777651 235667
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcC------CCCChhhhHHHHHH
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAV------DDLGVEVFEPLIRT 317 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~ 317 (353)
..+..++...|++++|...+++..+.. + .+...+..+..+
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p-~~~~~~~~l~~~ 121 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGS-SAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch-hHHHHHHHHHHH
Confidence 777777777777777777777777666 4 444455444443
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=9.4e-08 Score=79.25 Aligned_cols=151 Identities=7% Similarity=-0.045 Sum_probs=102.6
Q ss_pred cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---------------HHHHHHH
Q 018582 34 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---------------WTTFSNL 98 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l 98 (353)
.+++++|++.|+...... +-+...+..+...+.+.|++++|...|++..+.. +.+ ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHH
Confidence 344555555544433211 1135566677777777777777777777777752 222 4677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 178 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (353)
..+|.+.|++++|+..+++.....+. +..+|..+..+|...|++++|+..|++..+..+ .+...+..+..++...|+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888776544 677778888888888888888888888777654 3556777777777777877
Q ss_pred hHH-HHHHHHHH
Q 018582 179 PGA-EKCFKEWE 189 (353)
Q Consensus 179 ~~a-~~~~~~~~ 189 (353)
+++ ...+..|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 44555554
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.81 E-value=2.1e-08 Score=76.40 Aligned_cols=88 Identities=10% Similarity=-0.031 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018582 128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 207 (353)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 207 (353)
.+|..+..+|...|++++|+..+++.....+ .+...+..+..++...|++++|...|++..+..+. +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 3444455555555555555555555544432 23444445555555555555555555555444322 344444444444
Q ss_pred HhcCChHHHH
Q 018582 208 AKEGRLENAE 217 (353)
Q Consensus 208 ~~~g~~~~a~ 217 (353)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=4.2e-07 Score=63.42 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
+...+.+.|++++|...|++.....+. +...|..+..++.+.|++++|+..+++..+..+ .+...|..+..++...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhC
Confidence 333333444444444444433333221 333333333334444444444444443333322 122333333333333344
Q ss_pred hhHHHHHHHH
Q 018582 178 LPGAEKCFKE 187 (353)
Q Consensus 178 ~~~a~~~~~~ 187 (353)
+++|...|++
T Consensus 88 ~~~A~~~~~~ 97 (126)
T 3upv_A 88 YASALETLDA 97 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4433333333
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=4e-07 Score=62.36 Aligned_cols=111 Identities=15% Similarity=0.026 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 276 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------DWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------ccHHHH
Confidence 3455556666666667777776666666542 22455666666666666777777777777666541 235566
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 316 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (353)
..+..++...|++++|...+++..+.++ .+...+..+..
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 114 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQN 114 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 6666667777777777777777666665 45555544443
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.76 E-value=2.5e-08 Score=75.98 Aligned_cols=159 Identities=12% Similarity=-0.023 Sum_probs=98.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC---------------hhHH
Q 018582 101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA---------------NISY 165 (353)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~ 165 (353)
.....|+++.+.+.++.-....+ .....+..+...+...|++++|+..|++.....+... ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 33344555555544442221111 1334555666667777777777777777665433211 2678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 245 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 245 (353)
..+..++...|++++|...+++..+..+ .+...+..+..+|...|++++|...|++..+... -+...+..+...+...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHH
Confidence 8888999999999999999999988764 3788899999999999999999999999887632 2566777777777777
Q ss_pred CChHHHH-HHHHHHHHcC
Q 018582 246 GDMKLAV-DCLEKAIDTG 262 (353)
Q Consensus 246 ~~~~~a~-~~~~~~~~~~ 262 (353)
++.+++. ..+..+...+
T Consensus 170 ~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHC-------------
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 6666665 4555554443
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=1e-06 Score=60.22 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+..+ .+...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHH
Confidence 33444444444444444444444333221 333344444444444444444444444433322 1233333344444444
Q ss_pred CChhHHHHHHHHHHh
Q 018582 176 KDLPGAEKCFKEWES 190 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~ 190 (353)
|++++|...+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444433
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=1.1e-07 Score=68.01 Aligned_cols=93 Identities=17% Similarity=0.102 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 174 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (353)
+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|+..|++.....+ .+...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 334444444455555555555544443332 444444444445555555555555554444432 133344444444445
Q ss_pred cCChhHHHHHHHHHH
Q 018582 175 LKDLPGAEKCFKEWE 189 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~ 189 (353)
.|++++|...|+...
T Consensus 99 ~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 99 LGDLDGAESGFYSAR 113 (142)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554444
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=4e-07 Score=65.09 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHH
Q 018582 198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 277 (353)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
..+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|++...... .+...+.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~ 90 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-------NEPRFPF 90 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCTHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCcHHHH
Confidence 3444445555555666666666665555422 2445555555556666666666666666655541 2344555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 278 TFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
.+..++...|++++|...|++..+..+
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555556666666666666666555444
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.75 E-value=2.8e-07 Score=64.48 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hhhHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEI 237 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 237 (353)
++..+...+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..+++..+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444555555666666666666665554433 455566666666666666666666666554211 111 124555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC
Q 018582 238 FSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+...+...|++++|++.|++.+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666667777777777777776654
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=4.3e-07 Score=66.73 Aligned_cols=100 Identities=16% Similarity=-0.028 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 276 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
...+..+...+...|++++|...|++..+... .+...|..+..+|...|++++|++.+++.++... .+...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~ 82 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------KYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHH
Confidence 34445555555555555555555555554421 1444555555555555555555555555555540 134555
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
..+..++...|++++|...|++..+..+
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 5555555555556666555555555554
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1e-06 Score=75.66 Aligned_cols=168 Identities=10% Similarity=-0.066 Sum_probs=108.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChh----HHHHHHHHHHhcCChhHHHHHHHHHHh----cCC-CCcHHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANI----SYLNMIQVLVNLKDLPGAEKCFKEWES----GCA-TYDIRV 199 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~ 199 (353)
+..+...|...|++++|.+.+..+...... ++.. +.+.+...+...|+++.+..++..... .+. ..-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556667777777777777777765442111 1111 222233334455777777777776542 221 223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc--CCC--C-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCCCCccc
Q 018582 200 TNVMIGAYAKEGRLENAEELKERARRR--GAD--P-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG--RGDGGKWVPS 272 (353)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 272 (353)
+..+...|...|++++|..++.++... +.. + ...++..++..|...|++++|..++++..... +. ..+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~ 213 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY----CPTQ 213 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC----CchH
Confidence 778888999999999999998887642 111 1 13567888899999999999999998876642 11 0111
Q ss_pred --HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 273 --SETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 273 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
...+..+...+...|++++|...+.+..+
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566667778889999999888777654
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=8.1e-07 Score=63.70 Aligned_cols=112 Identities=16% Similarity=-0.018 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP 271 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (353)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|++.+++..+... .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------G 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-------c
Confidence 4555666666666677777777777766654 333 45566666667777777777777777666541 2
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582 272 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 317 (353)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (353)
+...+..+..++...|++++|...+++..+..+ .+...+..+...
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRNI 142 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHH
Confidence 455666666677777777777777777776665 455555444443
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=8.3e-07 Score=65.17 Aligned_cols=96 Identities=17% Similarity=0.007 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 137 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (353)
.+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..|++.....+. +...|..+...|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444444444555555555555554443 2334444445555555555555555555554444322 344444455555
Q ss_pred HccCCHHHHHHHHHHHHHh
Q 018582 138 GQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~ 156 (353)
...|++++|.+.|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555544443
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=2.2e-07 Score=63.06 Aligned_cols=100 Identities=8% Similarity=-0.053 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CCHHHHHHHH
Q 018582 56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RDLSAYQFLI 134 (353)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 134 (353)
...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++..+..+. .+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 334445555555555666666666555554 2344555555556666666666666666655543221 0345555555
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHhC
Q 018582 135 TLYGQT-GNLSEVYRIWRSLRLAF 157 (353)
Q Consensus 135 ~~~~~~-~~~~~a~~~~~~~~~~~ 157 (353)
..+... |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 666666 66666666666655543
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=5.1e-07 Score=63.16 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 119 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (353)
..+...+.+.|++++|+..|++.++. .|.+...|..+..+|.+.|++++|+..+++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444443 23334444444444555555555554444443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=1.1e-06 Score=62.11 Aligned_cols=100 Identities=13% Similarity=-0.026 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 275 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
+...+..+...+...|++++|...|.+...... .+...|..+...+...|++++|...+++..+... .+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------QSVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------hhHHH
Confidence 344555555555555555555555555554421 2344555555555555555555555555555440 23445
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 276 IRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
+..+..++...|++++|...++++.+..
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 5555555555566666655555555543
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.66 E-value=8.1e-07 Score=60.17 Aligned_cols=97 Identities=6% Similarity=-0.028 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHH
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVL 172 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 172 (353)
.+..+...+.+.|++++|...+++..+..+. +...+..+...+...|++++|.+.+++..+..+. .+...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3344445555555555555555555443322 3444455555555555555555555554443221 0234444455555
Q ss_pred Hhc-CChhHHHHHHHHHHhc
Q 018582 173 VNL-KDLPGAEKCFKEWESG 191 (353)
Q Consensus 173 ~~~-~~~~~a~~~~~~~~~~ 191 (353)
... |++++|.+.++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 5555555555555444
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=5.3e-06 Score=71.25 Aligned_cols=196 Identities=8% Similarity=-0.086 Sum_probs=87.1
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDS----------------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 92 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 92 (353)
..+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+...-...++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455667777777777776664211111 014445555666666666666655544421011111
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----ccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC----
Q 018582 93 ----TTFSNLASIYVEAGLFEKAERALKELEN----RNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---- 159 (353)
Q Consensus 93 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 159 (353)
.+.+.+...+...|+.+.|..+++.... .+..+ -..++..+...|...|++++|..+++++...-..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1122222333344555555555555422 11111 1234445555555555555555555554332110
Q ss_pred C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCC-c--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582 160 T-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG---CATY-D--IRVTNVMIGAYAKEGRLENAEELKERAR 224 (353)
Q Consensus 160 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (353)
+ ...++..++..|...|++++|..++++.... ...| . ...+..+...+...|++++|...|.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1124444555555555555555555544321 0111 1 1233333444444455555555554443
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-06 Score=62.59 Aligned_cols=95 Identities=15% Similarity=0.030 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 133 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 133 (353)
.+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++.....+. +...+..+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 3444444444555555555555555442 222 344444555555555555555555555443222 34445555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHh
Q 018582 134 ITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
...+...|++++|...|++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555444
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=1.3e-06 Score=61.85 Aligned_cols=93 Identities=12% Similarity=-0.029 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 137 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (353)
.+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++.....+. +...+..+...+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 87 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 3444444444444444444444444443 2333444444444444444444444444444443322 334444444444
Q ss_pred HccCCHHHHHHHHHHH
Q 018582 138 GQTGNLSEVYRIWRSL 153 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~ 153 (353)
...|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 88 LEMESYDEAIANLQRA 103 (137)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444444443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=5.9e-07 Score=62.81 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hhhHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEI 237 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 237 (353)
.+..+...+...|++++|...+++.....+ .+...+..+...|...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344455555556666666666665555432 2455556666666666666666666666554321 111 455666
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC
Q 018582 238 FSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+...+...|++++|.+.|++..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6666777777777777777777654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=6.8e-07 Score=61.92 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 138 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (353)
+..+...+.+.|++++|...|++..+. .+.+...+..+..++...|++++|+..|++..+..+. +..++..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 334444555555555555555555554 3444555555555555555555555555555554433 4445555555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 018582 139 QTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~ 155 (353)
..|++++|+..+++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.61 E-value=1.1e-06 Score=61.44 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC--CC----HHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH--RD----LSAYQF 132 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 132 (353)
+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++.....+. ++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444445555555555544443 2333444444444555555555555555444332211 11 334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHh
Q 018582 133 LITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
+...+...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 444444455555555555444443
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.59 E-value=3.6e-06 Score=58.73 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=69.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc----HH
Q 018582 202 VMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SE 274 (353)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~ 274 (353)
.+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...+++..+.. |+ ..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~ 77 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------PTHDKAAG 77 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTSTTHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------CCCcccHH
Confidence 4456667777888888888777765321 22 366667777778888888888888877765 32 45
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 311 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (353)
.+..+..++...|++++|...++++.+..| .+....
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 113 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP-GSDAAR 113 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TSHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CChHHH
Confidence 667777778888888888888888877765 444433
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=1e-06 Score=60.94 Aligned_cols=92 Identities=11% Similarity=-0.037 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582 168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 247 (353)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 247 (353)
+...+.+.|++++|...+++..+..+. +...|..+..++...|++++|...|++..+..+. +...+..+...+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 344444555555555555555444322 4444445555555555555555555555443211 33444445555555555
Q ss_pred hHHHHHHHHHHHHc
Q 018582 248 MKLAVDCLEKAIDT 261 (353)
Q Consensus 248 ~~~a~~~~~~~~~~ 261 (353)
+++|+..+++.++.
T Consensus 101 ~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 101 ANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.54 E-value=1.6e-06 Score=75.44 Aligned_cols=120 Identities=14% Similarity=-0.022 Sum_probs=61.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 178 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (353)
...+.+.|++++|.+.+++..+..+. +..+|..+..+|.+.|++++|++.+++..+..+ .+..++..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 33445556666666666665554332 455556666666666666666666666555433 2344555555556666666
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHhcCChHHHHHHHH
Q 018582 179 PGAEKCFKEWESGCATYDIRVTNVMIGA--YAKEGRLENAEELKE 221 (353)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 221 (353)
++|.+.+++..+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666655544322 23333333333 555555555555555
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=1.8e-06 Score=62.76 Aligned_cols=130 Identities=18% Similarity=0.098 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hh
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NI 163 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 163 (353)
++..+...+...|++++|...+++....... ++ ..++..+...+...|++++|.+.+++....... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666554332111 01 124455555555666666666655554332100 00 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESG----CA-TYDIRVTNVMIGAYAKEGRLENAEELKERA 223 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 223 (353)
.+..+...+...|++++|...+++..+. +. ......+..+...|...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3344444455555555555555443321 00 001223334444444444444444444443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.53 E-value=1.7e-06 Score=75.19 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=49.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY 147 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (353)
+.|++++|.+.|++..+. .+.+..++..+..+|.+.|++++|+..+++..+..+. +..+|..+..+|...|++++|+
T Consensus 18 ~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 344445555555444443 2333444444555555555555555555554443322 3444444445555555555555
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHH--HHhcCChhHHHHHHH
Q 018582 148 RIWRSLRLAFPNTANISYLNMIQV--LVNLKDLPGAEKCFK 186 (353)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 186 (353)
+.|++..+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555544443321 12222223222 444455555555444
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.51 E-value=1.3e-05 Score=55.86 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=42.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHH
Q 018582 63 MRALAAVNDISGAERVIEEMKRDGRVAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLY 137 (353)
Q Consensus 63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 137 (353)
...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+......+... ..++..+...+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 334444555555555555544431 1111 2344444555555555555555555444332210 33444444455
Q ss_pred HccCCHHHHHHHHHHHHHh
Q 018582 138 GQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~ 156 (353)
...|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=5e-06 Score=71.95 Aligned_cols=143 Identities=8% Similarity=0.022 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--------------HHHHHHHHHH
Q 018582 71 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--------------LSAYQFLITL 136 (353)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 136 (353)
++++|...|+..... .+.....+..+...+.+.|++++|...|++.....+... ..+|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433332 122344566677777777777777777777765433321 3455555555
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582 137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 216 (353)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (353)
|.+.|++++|+..+++..+..+ .+...|..+..+|...|++++|...|++..+..+. +...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555433 23445555555555555555555555555554322 444555555555555554444
Q ss_pred H
Q 018582 217 E 217 (353)
Q Consensus 217 ~ 217 (353)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=1.9e-06 Score=62.58 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHhcC----C-CCc
Q 018582 127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEWESGC----A-TYD 196 (353)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~ 196 (353)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..... . ...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346788888999999999999999987654211 11 1367888899999999999999999976421 1 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 197 IRVTNVMIGAYAKEGRLENAEELKERARRR----GADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
...+..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778889999999999999999987643 1111 1346777888899999999999999998765
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.47 E-value=2.9e-06 Score=73.43 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
....+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455677777888888888888888888776422211 478888999999999999999999999998
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582 262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 325 (353)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (353)
.. .+...|..+..+|...|++++|...|+++.+..+ .+..++..+..++.+.++..
T Consensus 347 ~p-------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 347 DS-------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp ST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred CC-------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 61 3578899999999999999999999999999988 78889999999998888743
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=2.1e-05 Score=69.73 Aligned_cols=170 Identities=8% Similarity=-0.094 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-
Q 018582 143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD----------LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG- 211 (353)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 211 (353)
.++|++.++++....+. +..+|+.--.++...|+ ++++.+.++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 35666777766665542 34445544444555555 77788888888877655 7777877777777778
Q ss_pred -ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc---
Q 018582 212 -RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--- 286 (353)
Q Consensus 212 -~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 286 (353)
+++++++.++++.+.... +...|+.-...+.+.| .++++++.+.++++..+ -+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-------~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-------SNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-------CCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-------CCccHHHHHHHHHHhhccc
Confidence 668888888888887544 6778887777777777 78888888888888762 3567777766666553
Q ss_pred -----------CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 287 -----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 287 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
+.++++.+.++++...+| .+..+|..+...+.+.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence 457889999999999999 899999999888888776
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=8.4e-06 Score=59.55 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++.++..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45677777888888888888888888887764 2356777788888888888888888888888876
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=5.7e-06 Score=60.46 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------C---------CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRR--------G---------ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
.+......+.+.|++++|...|.+.... . -+.+...|..+..+|.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555556666666655555432 0 0113467888899999999999999999999998
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-hhhHHHHH
Q 018582 262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV-EVFEPLIR 316 (353)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 316 (353)
.. .+...|..+..++...|++++|...|++..+..| .+. .....+..
T Consensus 93 ~p-------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~l~~ 140 (162)
T 3rkv_A 93 EE-------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-AAASVVAREMKI 140 (162)
T ss_dssp ST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred CC-------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 61 3578899999999999999999999999999887 555 33444433
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=1.1e-06 Score=60.46 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=41.8
Q ss_pred cCCcchHHHHHHHHHHCC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 018582 34 TGHPEKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 111 (353)
Q Consensus 34 ~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 111 (353)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++..+. .+.+..++..+..++.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 355555555555555432 1122334455555555555555555555555554 233444555555555555555555
Q ss_pred HHHHHHHHHc
Q 018582 112 ERALKELENR 121 (353)
Q Consensus 112 ~~~~~~~~~~ 121 (353)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.41 E-value=5e-05 Score=67.37 Aligned_cols=174 Identities=7% Similarity=-0.081 Sum_probs=128.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582 71 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL----------FEKAERALKELENRNAHRDLSAYQFLITLYGQT 140 (353)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (353)
..++|++.++++... .+-+..+|+.--.++...|+ ++++++.++.+.+..++ +..+|+.-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 345678888888876 45566677666666666555 78888888888877665 777887777777777
Q ss_pred C--CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-------
Q 018582 141 G--NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE------- 210 (353)
Q Consensus 141 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 210 (353)
+ +++++++.++++.+..+. +-.+|+.-...+.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887653 6777777777777777 788888888888877655 777887777666653
Q ss_pred -------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582 211 -------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 250 (353)
Q Consensus 211 -------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 250 (353)
+.++++.+.+++.....+. |...|...-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999888876433 67788888777777766443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=1.8e-06 Score=59.26 Aligned_cols=87 Identities=11% Similarity=0.037 Sum_probs=55.4
Q ss_pred cCChhHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582 175 LKDLPGAEKCFKEWESGC--ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 252 (353)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 252 (353)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766653 1224566667777777777777777777777765322 4566666777777777777777
Q ss_pred HHHHHHHHcC
Q 018582 253 DCLEKAIDTG 262 (353)
Q Consensus 253 ~~~~~~~~~~ 262 (353)
+.+++.+...
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 7777776664
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=8.1e-06 Score=68.46 Aligned_cols=86 Identities=10% Similarity=-0.019 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 243 (353)
.|..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++++|...|++..+... .+...+..+...+.
T Consensus 275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 4444445555555555555555555544322 444455555555555555555555555544321 13334444444444
Q ss_pred ccCChHHH
Q 018582 244 RNGDMKLA 251 (353)
Q Consensus 244 ~~~~~~~a 251 (353)
..++.+++
T Consensus 353 ~~~~~~~a 360 (370)
T 1ihg_A 353 KIKAQKDK 360 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.36 E-value=8.7e-06 Score=68.25 Aligned_cols=136 Identities=10% Similarity=-0.064 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582 59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 138 (353)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (353)
+..+...+.+.|++++|...|++..+.- +... .....+.+. ... +.+..+|..+..+|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~-------~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA-------KLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence 5556666777777777777777776520 0000 000000000 000 012334455555555
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 018582 139 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE 217 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 217 (353)
+.|++++|++.+++..+..+ .+...+..+..++...|++++|...|++..+..+. +...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544332 23344455555555555555555555555544322 4444445555555554444443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.8e-06 Score=71.61 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH-H
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV-L 172 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 172 (353)
.|..+..+|.+.|++++|+..+++.....+. +..+|..+..+|...|++++|...|++..+..+. +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 6677888888888888888888887776543 6777888888888888888888888877554332 33344444444 2
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 018582 173 VNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~ 192 (353)
...+..+.+.+.|..+....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 34456667777777776543
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.30 E-value=9.4e-06 Score=58.15 Aligned_cols=98 Identities=9% Similarity=-0.025 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------C-----hhhHHHHHHHHHccCChHHHHHHHHHHHHc------
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRRGADP------N-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT------ 261 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 261 (353)
.+......+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666677777777777666542210 1 237888888899999999999999998887
Q ss_pred -CCCCCCCCccc-HHHH----HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 262 -GRGDGGKWVPS-SETI----RTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 262 -~~~~~~~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
. |+ ...| .....++...|++++|...|++..+..|
T Consensus 93 ~~--------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 93 LN--------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp TT--------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CC--------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6 65 5678 8999999999999999999999998765
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=3e-05 Score=55.55 Aligned_cols=27 Identities=11% Similarity=-0.213 Sum_probs=14.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
+......+.+.|++++|+..|++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 333444455556666666666555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=6.4e-06 Score=68.26 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 172 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (353)
..+..+...+.+.|++++|...|++..... |+.. .+...++.+++...+. ...|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 344555566666666666666666655432 2211 1122223333222111 13677888889
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHccCChHHH
Q 018582 173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY-YLRNGDMKLA 251 (353)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~a 251 (353)
.+.|++++|...+++..+..+. +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887643 7788888999999999999999999988765321 33444444444 2345667778
Q ss_pred HHHHHHHHHcC
Q 018582 252 VDCLEKAIDTG 262 (353)
Q Consensus 252 ~~~~~~~~~~~ 262 (353)
.+.|.+|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888887764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.14 E-value=3.6e-05 Score=49.64 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=70.8
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (353)
+...+..+...+...|++++|++.+++..+... .+...+..+..++.+.|++++|...+++..+..+ .+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHH
Confidence 345677788888999999999999999988761 3577888899999999999999999999999888 78888
Q ss_pred hHHHHHHHHHcC
Q 018582 311 FEPLIRTYAAAG 322 (353)
Q Consensus 311 ~~~l~~~~~~~g 322 (353)
+..+..++.+.|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 888888877654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.14 E-value=2.5e-05 Score=53.22 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 75 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 75 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
|...|++..+. .+.+...+..+...|...|++++|...|++.....+. +..+|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443 2334444444555555555555555555554443322 34444444455555555555555554443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.10 E-value=0.00011 Score=52.02 Aligned_cols=110 Identities=13% Similarity=-0.003 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHH
Q 018582 142 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAE 217 (353)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 217 (353)
++++|++.|++..+.+. |+ .. +...|...+..++|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45556666665555542 21 11 4444545555555666666655554 44555556666655 56666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 018582 218 ELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 218 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~ 262 (353)
+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666554 44555566666665 566777777777766665
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=4.3e-05 Score=52.03 Aligned_cols=81 Identities=11% Similarity=-0.025 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018582 38 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 117 (353)
Q Consensus 38 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 117 (353)
+.|++.|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+|...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35666666666542 334556666667777777777777777777765 345566677777777777777777777777
Q ss_pred HHHc
Q 018582 118 LENR 121 (353)
Q Consensus 118 ~~~~ 121 (353)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.09 E-value=0.00016 Score=51.05 Aligned_cols=112 Identities=13% Similarity=0.004 Sum_probs=93.9
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChHHH
Q 018582 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLA 251 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a 251 (353)
+++++|.+.|++..+.+ .++.. |...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998887 33433 7777778888999999999998875 67788888888887 8899999
Q ss_pred HHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 018582 252 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 304 (353)
+++|++..+.| +...+..|...|.. .+++++|.+.|++..+.+.
T Consensus 81 ~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999875 56677788888888 8999999999999988876
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=1.6e-05 Score=68.84 Aligned_cols=132 Identities=11% Similarity=-0.012 Sum_probs=96.5
Q ss_pred HHHhcCChhHHHHHHHHHHhc-----CC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC-CCC-hhhHH
Q 018582 171 VLVNLKDLPGAEKCFKEWESG-----CA--TYDIRVTNVMIGAYAKEGRLENAEELKERARRR-----GA-DPN-AKTWE 236 (353)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~ 236 (353)
.+...|++++|..++++..+. |. +....+++.|...|...|++++|..++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 21 123577899999999999999999999887632 21 222 35788
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
.|...|...|++++|+.++++.++.....-+.-.|+ ..+...+-.++...+.+++|+.+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765410000001243 345666777888899999999999998773
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.2e-05 Score=51.46 Aligned_cols=93 Identities=9% Similarity=-0.004 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc---
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--- 272 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 272 (353)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++.++.. |+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--------STAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--------SSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCccH
Confidence 44566667777777777777777777777653 2256667777777777777777777777777765 33
Q ss_pred ----HHHHHHHHHHHHhcCChhhHHHHHH
Q 018582 273 ----SETIRTFMRHFEQEKDVDGAEGFLE 297 (353)
Q Consensus 273 ----~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (353)
...+..+..++...|+.+.|...++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4445555556666666655544433
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=5.4e-05 Score=65.61 Aligned_cols=97 Identities=10% Similarity=-0.082 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh-----cCC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCC-C
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWES-----GCA--TYDIRVTNVMIGAYAKEGRLENAEELKERARR-----RGAD-P 230 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-p 230 (353)
+++.+..+|...|++++|..++++... .|. +-...+++.|...|...|++++|..++++..+ .|.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 344444455555555555444444331 111 11233445555555555555555555554332 1211 1
Q ss_pred C-hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582 231 N-AKTWEIFSDYYLRNGDMKLAVDCLEKAID 260 (353)
Q Consensus 231 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 260 (353)
+ ..+.+.+-.++...+.+++|+.++.++++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233344444455555555555555554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=6.5e-05 Score=50.50 Aligned_cols=86 Identities=10% Similarity=0.037 Sum_probs=72.5
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---
Q 018582 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG--- 307 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 307 (353)
+...+..+...+...|++++|++.|++.++... .+...+..+..++.+.|++++|...+++..+..+ .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHH
Confidence 456788888999999999999999999999861 3578899999999999999999999999999887 55
Q ss_pred ---hhhhHHHHHHHHHcCCC
Q 018582 308 ---VEVFEPLIRTYAAAGRT 324 (353)
Q Consensus 308 ---~~~~~~l~~~~~~~g~~ 324 (353)
...+..+..++...|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 56677777777776663
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=0.00011 Score=47.23 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 156 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (353)
.+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3344444444444444444444444433222 3344444444444444444444444444443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.94 E-value=4.2e-05 Score=54.67 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=60.2
Q ss_pred CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582 176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR----------LENAEELKERARRRGADPNAKTWEIFSDYYLRN 245 (353)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 245 (353)
+.+++|.+.++...+..+. +...|+.+..++...++ +++|+..|++..+..+. +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 3444555555555544432 44555555555554443 34777777776665322 455666676666655
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHH
Q 018582 246 -----------GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 282 (353)
Q Consensus 246 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (353)
|++++|++.|++.++.. |+...|...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~--------P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 58999999999999987 877766655554
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.94 E-value=4.9e-05 Score=54.36 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=62.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF----------EKAERALKELENRNAHRDLSAYQFLITLY 137 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (353)
+.+.+++|.+.++...+. .+.+...|..+..++.+.+++ ++|+..|++..+..+. +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 445567777777777765 455666776666676666554 4777777777666544 566677777777
Q ss_pred HccC-----------CHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 018582 138 GQTG-----------NLSEVYRIWRSLRLAFPNTANISYLNMI 169 (353)
Q Consensus 138 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (353)
...| ++++|++.|++..+.. |+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 6653 6777777777776653 4444444333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=0.00014 Score=47.99 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582 90 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 154 (353)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (353)
.+...+..+..+|.+.|++++|+..|++..+..+. +..+|..+..+|...|++++|.+.|++..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555566666666666666655554433 34455555556666666666665555544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.83 E-value=5.5e-05 Score=50.05 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=34.6
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 84 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 84 (353)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555566666666665555532 22344555555555555555555555555544
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.60 E-value=0.0038 Score=51.28 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=61.8
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH
Q 018582 194 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 273 (353)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (353)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++....+ |..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--------P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--------PGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCc
Confidence 4477888888777777899999999999999875 677777788888889999999999999999987 777
Q ss_pred HHHH
Q 018582 274 ETIR 277 (353)
Q Consensus 274 ~~~~ 277 (353)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 6653
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.48 E-value=0.007 Score=49.76 Aligned_cols=64 Identities=9% Similarity=-0.112 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444444444555555555555555543 34444445555555556666666655555543
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.39 E-value=0.0012 Score=56.40 Aligned_cols=99 Identities=10% Similarity=-0.084 Sum_probs=74.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc---CCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HH
Q 018582 203 MIGAYAKEGRLENAEELKERARRR---GADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SE 274 (353)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~ 274 (353)
.+..+.+.|++++|..++++..+. -..|+ ..+++.+...|...|++++|+.++++.+......-+...|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566789999999999998753 12222 35788999999999999999999998876421100112344 46
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999998776
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.39 E-value=0.00043 Score=58.97 Aligned_cols=93 Identities=11% Similarity=-0.054 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHHHHHhc---CCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHH
Q 018582 209 KEGRLENAEELKERARRR---GADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM 280 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 280 (353)
..|++++|..++++.++. -+.|+ ..+++.+...|...|++++|+.++++.++.....-+...|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987642 22232 36789999999999999999999999876421111112354 46799999
Q ss_pred HHHHhcCChhhHHHHHHHHHh
Q 018582 281 RHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 281 ~~~~~~~~~~~a~~~~~~~~~ 301 (353)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998776
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.39 E-value=0.00045 Score=45.26 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=30.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 018582 64 RALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNLASIYVEAGLFEKAERALKELENRN 122 (353)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 122 (353)
..+...|++++|...|++..+. .+.+.. .+..+..+|...|++++|...|++.....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555555555555554 233444 55555555555555666655555555543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.0024 Score=41.65 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=55.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582 238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSE-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 311 (353)
Q Consensus 238 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 311 (353)
....+...|++++|++.+++..+.. | +.. .+..+..++...|++++|...|++..+.++ .+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHH
Confidence 4566778899999999999999986 5 456 888899999999999999999999999888 666655
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.18 E-value=0.01 Score=38.31 Aligned_cols=68 Identities=12% Similarity=-0.012 Sum_probs=36.5
Q ss_pred CCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 018582 89 AADWTTFSNLASIYVEAGL---FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF 157 (353)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (353)
+.+...+..+..++...++ .++|..++++.....+. ++.+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3444555555555543333 45566666655554443 45555555555566666666666666655543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.0032 Score=53.68 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC-CCC-hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582 198 RVTNVMIGAYAKEGRLENAEELKERARRR-----GA-DPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAID 260 (353)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 260 (353)
.+++.|..+|...|++++|..++++.++. |. .|+ ..+++.|...|...|++++|+.++++.++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45566666666666666666666655421 11 122 24466666666666666666666666544
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.16 E-value=0.0092 Score=38.50 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=39.4
Q ss_pred ChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 231 NAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+...+..+..++...++ .++|..++++.++.. | +......+...+.+.|++++|...|+++.+.++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44555555555543333 566666666666665 3 355555566666666666666666666666655
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.15 E-value=0.005 Score=40.75 Aligned_cols=83 Identities=12% Similarity=-0.043 Sum_probs=60.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582 231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (353)
+...+..+...+...+++..|...++...+...++...-.+...++..+..++.+.|+++.|...++++.+..| .+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P-~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHH
Confidence 44556677788888888888888888877752111000124578899999999999999999999999999888 56555
Q ss_pred hHHH
Q 018582 311 FEPL 314 (353)
Q Consensus 311 ~~~l 314 (353)
.+.+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4433
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.04 E-value=0.015 Score=41.12 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCC
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKD 288 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 288 (353)
..+.+-|.+..+.|. ++..+...+..++++.+ +.++++.+++...+.. .| ....+..+.-++.+.|+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccC
Confidence 344445555444443 45556556666666665 4556677776666653 13 24455556666677777
Q ss_pred hhhHHHHHHHHHhcCCCCChh
Q 018582 289 VDGAEGFLEILKKAVDDLGVE 309 (353)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~ 309 (353)
++.|.+.++.+.+..| .|..
T Consensus 87 Y~~A~~y~~~lL~ieP-~n~Q 106 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEP-QNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHHHhcCC-CCHH
Confidence 7777777777776666 4433
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.0039 Score=53.14 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHHHHHHHcc---CCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-CCCh-hHHHHHH
Q 018582 104 EAGLFEKAERALKELENRN---AHR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP-NTAN-ISYLNMI 169 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~ 169 (353)
+.|++++|+..+++..+.. ..| ...+++.+...|...|++++|+.++++.... |. .|+. .+++.+.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4456666666666554321 111 1345566666666666666666666654321 11 1111 2456666
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 018582 170 QVLVNLKDLPGAEKCFKEWE 189 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~ 189 (353)
..|...|++++|..++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666666644
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.03 Score=52.07 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
..++..+.+.|..+.|.++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455556666666666665442110 0122334456666666654322 3445666666666666
Q ss_pred CChhHHHHHHHHH
Q 018582 176 KDLPGAEKCFKEW 188 (353)
Q Consensus 176 ~~~~~a~~~~~~~ 188 (353)
++++.|.+.|..+
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666654
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.013 Score=54.51 Aligned_cols=155 Identities=14% Similarity=0.045 Sum_probs=100.2
Q ss_pred HHHHHhcCCHHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 99 ASIYVEAGLFEKAER-ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
.......++++.|.+ ++..+ ++......++..+.+.|.++.|+++.+. | . .-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~----~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-D----QKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-H----HHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c-c----hheehhhhcCC
Confidence 344456788988877 55221 1122347778888899999999876632 1 1 11334567899
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 257 (353)
++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 99999886542 3678999999999999999999999998753 22344444556666666666555
Q ss_pred HHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582 258 AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 298 (353)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 298 (353)
....| . ++....+|.+.|++++|.+++.+
T Consensus 733 a~~~~--------~----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTG--------K----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTT--------C----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcC--------c----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554 1 12222334455566666555544
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.72 E-value=0.073 Score=36.45 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=78.2
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCChhH
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI---SYLNMIQVLVNLKDLPG 180 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 180 (353)
-.|.+++..++..+...+ .+..-||-+|--....-+-+-..++++.+-.. .|.. -...++.+|.+.+.
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT--- 89 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC---
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcc---
Confidence 356667777777766553 24445555555555555666666665554322 1211 11223333333322
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 260 (353)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 260 (353)
+.......++.....|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+
T Consensus 90 ---------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 90 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3344555666677777777777777775432 355666777777777777777777777777777
Q ss_pred cCC
Q 018582 261 TGR 263 (353)
Q Consensus 261 ~~~ 263 (353)
.|+
T Consensus 154 kG~ 156 (172)
T 1wy6_A 154 KGE 156 (172)
T ss_dssp TTC
T ss_pred hhh
Confidence 773
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.71 E-value=0.036 Score=38.76 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHccCCH------HHHHHHHHHHHHhCCCCChh-HHHHHHH------HHHhcCChhHHHHHHHHHHhcC
Q 018582 126 DLSAYQFLITLYGQTGNL------SEVYRIWRSLRLAFPNTANI-SYLNMIQ------VLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+. .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666666 6666777766655 223321 1111111 1223478899999999987654
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 193 ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
-. -..+|....+.-.+.|+...|.+++.+....+.+| .......++
T Consensus 91 Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 33 37788888888888999999999999988876654 334444433
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.68 E-value=0.022 Score=40.28 Aligned_cols=81 Identities=11% Similarity=0.022 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHccCChHHHHHH
Q 018582 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDC 254 (353)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 254 (353)
.+.+-|.+..+.+. ++..+...+..++++.+ +.+++..+|+++.+.. .| +...+-.+.-+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444554444443 45566666666666665 4456666776666553 12 233444455566677777777777
Q ss_pred HHHHHHcC
Q 018582 255 LEKAIDTG 262 (353)
Q Consensus 255 ~~~~~~~~ 262 (353)
++.+++..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 77777665
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.62 E-value=0.037 Score=36.43 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
.++..|..++.+.|+++.|...+++...
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.60 E-value=0.036 Score=43.79 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc-CC
Q 018582 72 ISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVE-----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT-GN 142 (353)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 142 (353)
...|...+++..+. .|+ -..|..|...|.+ .|+.++|.+.|++..+.++.-+..++......++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34566667777764 344 4567777777777 377777777777777765543466666777777764 77
Q ss_pred HHHHHHHHHHHHHhCCC
Q 018582 143 LSEVYRIWRSLRLAFPN 159 (353)
Q Consensus 143 ~~~a~~~~~~~~~~~~~ 159 (353)
.+++.+.+++.....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777776554
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.59 E-value=9.3e-06 Score=68.14 Aligned_cols=251 Identities=10% Similarity=0.045 Sum_probs=166.0
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 99 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 99 (353)
.+..|..|..+....++..+|++.|- +. -|+..|..++.++.+.|.+++-.+.+...++.. -.|... +.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~ID--teLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVE--TELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTT--HHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccH--HHHH
Confidence 45678999999999999998887762 22 367788999999999999999999998877754 444444 4899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--------------------hCCC
Q 018582 100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL--------------------AFPN 159 (353)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------~~~~ 159 (353)
-+|++.++..+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. ..-.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998776554432 24554555666666666666666665554311 1112
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
.++.||..+-.+|...+.+.-|.-.--.+.-..-. ...++..|-..|.+++.+.+++.-... -......|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 46678999999999999988876665554432211 124677788889999999888887643 244677888888
Q ss_pred HHHHccCChHHHHHHHHHHHHc-CCCCCCCCcccHHHHHHHHHHHHhcCChhhHH
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 293 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 293 (353)
-.|++- ++++..+.++..... +++.--...-....|.-++-.|.+-.+++.|.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 877765 556555555443222 22100000012345677777777777777654
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.45 E-value=0.048 Score=43.08 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHH
Q 018582 213 LENAEELKERARRRGADPN---AKTWEIFSDYYLRN-----GDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRH 282 (353)
Q Consensus 213 ~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 282 (353)
...|...+++..+. .|+ -..|..+...|... |+.++|.+.|++.++.+ | +..++..+...
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHHHHHHHH
Confidence 46777778887775 455 45788888888884 99999999999999987 6 37788888888
Q ss_pred HHhc-CChhhHHHHHHHHHhcCCC--CChhhhHHH
Q 018582 283 FEQE-KDVDGAEGFLEILKKAVDD--LGVEVFEPL 314 (353)
Q Consensus 283 ~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 314 (353)
+++. |+.+.+.+.+++.....+. |+....+.+
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8884 9999999999999998876 554444443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.42 E-value=0.13 Score=35.97 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=65.8
Q ss_pred CCchhHHHHHHHHHhcCCc------chHHHHHHHHHHCCCCCCcc-hHHHHHHH------HHhcCChhHHHHHHHHHHHc
Q 018582 19 FSSMPFNSLMTLYAKTGHP------EKIPAIIQEMKASSIMPDSY-TYNVWMRA------LAAVNDISGAERVIEEMKRD 85 (353)
Q Consensus 19 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~ 85 (353)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+.. +...+|++.|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4667777777777777888 7777888877764 566532 11111111 12336777777777777654
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582 86 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR 125 (353)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (353)
. -.- ..+|......-.+.|++..|.+++......++.|
T Consensus 90 h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3 233 6666666666677777777777777777666553
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.061 Score=39.02 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH
Q 018582 65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 144 (353)
Q Consensus 65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (353)
...+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.... | +..+.-.|...|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHH
Confidence 344556666666554433 234455566666666666666666665542 1 233333444455555
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582 145 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 187 (353)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (353)
+..++-+.....|- ++....++.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55444444333331 22333344455666666666543
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.24 Score=35.99 Aligned_cols=104 Identities=15% Similarity=0.081 Sum_probs=71.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
-.....+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+.. -+..+.-.|...|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCC
Confidence 345566778888888887765 266788888888888888888888888652 13345555666777
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 222 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (353)
.+...++-+.....| . ++.....+.-.|+++++.++|.+
T Consensus 76 ~e~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777666655555444 2 24445556667888888888755
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.09 E-value=0.15 Score=34.67 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH---HHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhc
Q 018582 212 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL---AVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQE 286 (353)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 286 (353)
....+.+-|.+....|. |+..+--.+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-------~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHh
Confidence 34445555555544443 566666666677777665554 777777776654 13 234555566677788
Q ss_pred CChhhHHHHHHHHHhcCCCCChhh
Q 018582 287 KDVDGAEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 287 ~~~~~a~~~~~~~~~~~~~~~~~~ 310 (353)
|+++.|.+.++.+.+..| .|..+
T Consensus 88 g~Y~~A~~~~~~lL~~eP-~n~QA 110 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEP-QNNQA 110 (126)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred hhHHHHHHHHHHHHHhCC-CCHHH
Confidence 888888888888877776 45443
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.62 E-value=7.5e-06 Score=68.71 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=126.6
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
.+..|..+..+....+.+.+|++.| ++ .-|...|..++....+.|.+++-.+.+...++..- ++..=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---Ik----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---Hh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence 3456677777777777666666554 11 22334455677777777777777777665554322 333445677
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--------------------CC
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC--------------------AT 194 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~ 194 (353)
-+|.+.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.... -.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777665444332 3566566667777777777777776666532110 01
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582 195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 274 (353)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 274 (353)
-++.+|..+-.+|...+.+.-|...--.+. +.| .-...++..|...|.+++-+.+++..+... .....
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI---vha--deL~elv~~YE~~G~f~ELIsLlEaglglE-------rAHmG 264 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAALGLE-------RAHMG 264 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-------TCCHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhc---ccH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-------chhHH
Confidence 134455555555555555444433322222 222 223344455555566666666655544321 24556
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 329 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 329 (353)
+|+-|.-.|++- ++++..+.++..-. ..---.++++|.+..-|.+.+|
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~s------riNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWS------RVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSS------SSCCTTTHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHH------hccHHHHHHHHHHHhhHHHHHH
Confidence 666666666665 34433333332111 1112235566666555666555
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.51 E-value=0.18 Score=34.22 Aligned_cols=20 Identities=20% Similarity=0.039 Sum_probs=8.7
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 018582 171 VLVNLKDLPGAEKCFKEWES 190 (353)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~ 190 (353)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444443
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.42 E-value=1.7 Score=40.62 Aligned_cols=248 Identities=14% Similarity=0.048 Sum_probs=130.9
Q ss_pred HHhcCChhHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-------CCCHHHHHHHHHHH
Q 018582 66 LAAVNDISGAERVIEEMKRDG-RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA-------HRDLSAYQFLITLY 137 (353)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 137 (353)
....|+.++++.++......+ ...+....-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445567777766666544321 0112222323444555666666677777776554321 01111222232333
Q ss_pred HccCC-HHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582 138 GQTGN-LSEVYRIWRSLRLAFPNTANI--SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 214 (353)
Q Consensus 138 ~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 214 (353)
.-.|. -+++.+.+..+..... +... .-..+...+...|+.+....+++.+.+.. .-+..-...+.-++...|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 33332 2455555555544321 1111 11233444556788887888888776543 223333333334445678888
Q ss_pred HHHHHHHHHHhcCCCCChhhHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582 215 NAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 292 (353)
Q Consensus 215 ~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 292 (353)
.+..+.+.+... ..|....-. .+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+
T Consensus 542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-------~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-------NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-------cHHHHHHHHHHHHhhccCCHHHH
Confidence 888888888764 223222222 33446677888877777888887753 13344444444456667787777
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCC
Q 018582 293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 324 (353)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 324 (353)
.++++.+.+.+- |...--..+..+....|..
T Consensus 614 ~rlv~~L~~~~d-~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 614 PRIVQLLSKSHN-AHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp HHHTTTGGGCSC-HHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhccCCC
Confidence 777776655443 5555445555555555553
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.29 E-value=1.9 Score=40.35 Aligned_cols=156 Identities=9% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHHHHhCCCCChhHHH---HHHHHHH
Q 018582 99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI--TLYGQTGNLSEVYRIWRSLRLAFPNTANISYL---NMIQVLV 173 (353)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~ 173 (353)
...+.-.|+-+....++..+.+.. +......+. -++...|+.+.+..+.+.+... ..|.. -|. ++.-+|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAya 571 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLL-RYGGAFTIALAYA 571 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhc
Confidence 333445666666666666655421 222222233 3344677777777777776653 11222 222 3344566
Q ss_pred hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh-HHHH
Q 018582 174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM-KLAV 252 (353)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~ 252 (353)
..|+.....++++.+.... ..+++....+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .+++
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 7778777777777777543 3344433333334445666666677776655543 44444444444444444443 5677
Q ss_pred HHHHHHHHc
Q 018582 253 DCLEKAIDT 261 (353)
Q Consensus 253 ~~~~~~~~~ 261 (353)
+.+..+...
T Consensus 650 d~L~~L~~D 658 (963)
T 4ady_A 650 DVLDPLTKD 658 (963)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHccC
Confidence 788887654
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.28 E-value=0.43 Score=32.77 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=96.9
Q ss_pred HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582 137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 216 (353)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 216 (353)
..-.|..++..++..+..... +..-|+.+|--....-+-+-..++++.+-+. .|. ..+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 344678888888888776542 4456677776666666666666666665432 121 234555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582 217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (353)
...+-.+- .+.......++.+...|.-++-.+++..+.... .|++.....+..+|.+.|+..+|.+++
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-------~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-------EVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-------CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-------CCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 44444322 245667777888889999999999998865542 388899999999999999999999999
Q ss_pred HHHHhcCC
Q 018582 297 EILKKAVD 304 (353)
Q Consensus 297 ~~~~~~~~ 304 (353)
+++-+.|.
T Consensus 149 ~~AC~kG~ 156 (172)
T 1wy6_A 149 IEACKKGE 156 (172)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 99988887
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.23 Score=45.29 Aligned_cols=126 Identities=9% Similarity=-0.003 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHccCC-hHHHHHHHHHHHHc------CCCCCCC--
Q 018582 201 NVMIGAYAKEGR-LENAEELKERARRRGADPNAKT--WEIFSDYYLRNGD-MKLAVDCLEKAIDT------GRGDGGK-- 268 (353)
Q Consensus 201 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~~-- 268 (353)
..++..+...++ ++.|..+|+++.+.. |.... ...++..+...++ --+|.+++.+.++. ..++...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555556 577888999888763 33222 2233333333332 22455555554431 1110000
Q ss_pred --Ccc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582 269 --WVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 329 (353)
Q Consensus 269 --~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 329 (353)
..| +......=..-+...|+++.|+++-++....-| .+..+|..|..+|.+.|++..|++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHH
Confidence 000 011122223346678999999999999999998 899999999999999999888885
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.51 Score=43.09 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhc------CCCC-Chh--
Q 018582 165 YLNMIQVLVNLKD-LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR-LENAEELKERARRR------GADP-NAK-- 233 (353)
Q Consensus 165 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~------~~~p-~~~-- 233 (353)
...++..+...++ .+.|..+++++.+..+.-+......++..+...++ --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666666 47788889888876543232222333333333332 22455555554321 1111 111
Q ss_pred --------hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582 234 --------TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILK 300 (353)
Q Consensus 234 --------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 300 (353)
....=.+-|...|+++.|+++-++....- |+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112344667899999999999999875 65 7899999999999999999999988763
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.40 E-value=2.1 Score=36.55 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC---hhhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCCCCcc
Q 018582 199 VTNVMIGAYAKEGRLENAEELKERARRR--GADPN---AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT--GRGDGGKWVP 271 (353)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 271 (353)
....|...|...|++.+|..++.++... |..+. ...+..-++.|...+++.+|..++.++... ... ..|
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~----~~~ 214 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP----KYE 214 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS----CCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC----CcH
Confidence 3456778888888888888888887632 22111 245666677888889999998888876432 110 113
Q ss_pred c--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582 272 S--SETIRTFMRHFEQEKDVDGAEGFLEILKK 301 (353)
Q Consensus 272 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (353)
+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 24456666777778888888777766543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.18 E-value=0.47 Score=39.76 Aligned_cols=70 Identities=10% Similarity=-0.013 Sum_probs=41.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCcHHHH
Q 018582 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE-----SGCATYDIRVT 200 (353)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 200 (353)
...++..+...|++.+++..+..+....+ .+...+..++.++.+.|+..+|.+.|+... +.|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34455556666666666666666655543 355566666666666666666666666643 24666655443
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.92 E-value=0.76 Score=29.57 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 317 (353)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (353)
|.-+..+-++.+.... +.|++.+..+.+++|.+.+++..|.++++-++..-- ....+|..+++-
T Consensus 25 D~~e~rrglN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHHH
Confidence 4445666677777666 679999999999999999999999999998887554 445567777654
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=2.8 Score=35.84 Aligned_cols=153 Identities=8% Similarity=0.059 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh--cCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCC--hhh
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWES--GCATYD---IRVTNVMIGAYAKEGRLENAEELKERARR----RGADPN--AKT 234 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~ 234 (353)
..+...+...|++.+|..++..+.. .+.... ...+...++.|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777778888888888877652 221111 35566677788888888888888887642 211222 134
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH----HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582 235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI----RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 310 (353)
Q Consensus 235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 310 (353)
+...+..+...+++.+|...|.++..... ...+...+ ..++.+..-.+..+.-..++.........++...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-----~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~ 295 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDA-----IKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLES 295 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHH
Confidence 56666777788888888888777765410 00122211 2222222222222222233333322222256777
Q ss_pred hHHHHHHHHHcCC
Q 018582 311 FEPLIRTYAAAGR 323 (353)
Q Consensus 311 ~~~l~~~~~~~g~ 323 (353)
|..|+.+|....-
T Consensus 296 ~~~L~k~f~~~~L 308 (445)
T 4b4t_P 296 QESLVKLFTTNEL 308 (445)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHHhchH
Confidence 8888888876443
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.59 E-value=2.3 Score=35.62 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----hCCCCChhHH
Q 018582 95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISY 165 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 165 (353)
...++..+...|++++|...+..+....+- +...|..+|.++.+.|+..+|++.|+.+.. -|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345667777788888888777777665443 677788888888888888888888877543 3777766653
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.06 E-value=1.1 Score=28.83 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
.-+..+-++.+......|++.+..+.+++|.+.+++..|.++|+.++.+ +.+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3345666666666677777777777777777777777777777777654 2233344555543
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.91 E-value=7.4 Score=37.91 Aligned_cols=189 Identities=11% Similarity=0.023 Sum_probs=113.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc----C----------------
Q 018582 133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG----C---------------- 192 (353)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------------- 192 (353)
++..+...+.++-+.++... ...+....-.+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445555555555443322 2223333345667788899999999999774210 0
Q ss_pred --CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 018582 193 --ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG 266 (353)
Q Consensus 193 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (353)
...-..-|..++..+-+.+.++.+.++-....+....-+. ..|..++..+...|++++|...+-.+....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---- 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---- 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH----
Confidence 0112245778888888999999999888776654221121 257888999999999999999988776654
Q ss_pred CCCcccHHHHHHHHHHHHhcCChhh------------HHHHHHH-HHhc-CCCCChhhhHHHHHHHHHcCC---ChHHHH
Q 018582 267 GKWVPSSETIRTFMRHFEQEKDVDG------------AEGFLEI-LKKA-VDDLGVEVFEPLIRTYAAAGR---TSPVML 329 (353)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~------------a~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~---~~~~~~ 329 (353)
--...+..|+...+..|..+. ..+++.. ++.. .+...+.-|..|-.-+...|+ .|+.++
T Consensus 969 ----~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B 969 ----LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp ----SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHH
Confidence 335667777776666555443 3333322 1112 221223346666666677777 344455
Q ss_pred HHHHh
Q 018582 330 RRLKM 334 (353)
Q Consensus 330 ~~m~~ 334 (353)
+...+
T Consensus 1045 e~~~R 1049 (1139)
T 4fhn_B 1045 EKLSR 1049 (1139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.66 E-value=8 Score=37.68 Aligned_cols=191 Identities=12% Similarity=0.047 Sum_probs=114.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC----------------
Q 018582 61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH---------------- 124 (353)
Q Consensus 61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------- 124 (353)
.++..+...+..+.+.++... .+.+...--.+..+|...|++++|...|.+... |+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 455556666777666554332 233444445677888899999999999976521 110
Q ss_pred -------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582 125 -------RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 193 (353)
Q Consensus 125 -------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (353)
.-..-|..++..+.+.+.++.+.++-....+.....+. ..|..+.+++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 01234677788888888888888887766654322222 2577888889999999999888877765443
Q ss_pred CCcHHHHHHHHHHHHhcCChHHH------------HHHHHHHHh-c-CCCCChhhHHHHHHHHHccCChHHHHH-HHHHH
Q 018582 194 TYDIRVTNVMIGAYAKEGRLENA------------EELKERARR-R-GADPNAKTWEIFSDYYLRNGDMKLAVD-CLEKA 258 (353)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~a------------~~~~~~~~~-~-~~~p~~~~~~~li~~~~~~~~~~~a~~-~~~~~ 258 (353)
-......++...|..|..+.- .+++..--+ . .+...+.-|..|-.-+..+|++.+|-. +|+.+
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 345666777777766655443 333322111 1 111112235555555566777776554 34444
Q ss_pred HH
Q 018582 259 ID 260 (353)
Q Consensus 259 ~~ 260 (353)
.+
T Consensus 1048 ~R 1049 (1139)
T 4fhn_B 1048 SR 1049 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.48 E-value=1.7 Score=29.64 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582 248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 317 (353)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (353)
.-+..+-++.+...+ +.|++.+....+++|.+.+|+..|.++|+-++.+-- +...+|..+++-
T Consensus 69 ~wElrrglN~l~~~D------lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHHHH
Confidence 334555666666666 679999999999999999999999999998887554 456668777654
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.81 E-value=2.1 Score=29.21 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
+..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45566666667777888888888888888888888888888887755 3334445655544
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.65 E-value=1.8 Score=30.97 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582 272 SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
+.+.---+..+|.+.+++++|..+++.+...
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 3445455778899999999999998876443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.60 E-value=2.3 Score=29.09 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=45.6
Q ss_pred CCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 229 DPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 229 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+ | ....+..+.-++.+.|+++.|.+..+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4455555555556655543 446777777777765 4 24556666667778888888888877777776
Q ss_pred CCCCh
Q 018582 304 DDLGV 308 (353)
Q Consensus 304 ~~~~~ 308 (353)
| .|.
T Consensus 109 P-~N~ 112 (134)
T 3o48_A 109 R-NNK 112 (134)
T ss_dssp T-TCH
T ss_pred C-CCH
Confidence 6 443
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.02 E-value=4.4 Score=34.42 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDG-RVAADWTTFSNLASIYVEAGLFEKAERALKEL 118 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (353)
++..+...+.+.|+++.|.+.|.++...- ...--...+-.+++.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45555556666666666666666655431 01222344555566666666666666666555
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.36 E-value=4.7 Score=34.25 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---CCCCChhH--H
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA---FPNTANIS--Y 165 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 165 (353)
.+...+...|.+.|+++.|.+.+.++......+ -...+-.+++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356679999999999999999999997644333 3567778889999999999999999987543 22222211 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESG 191 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (353)
..-+..+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122334568888888888776543
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.07 E-value=2.4 Score=30.29 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCc-------chHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPDS-------YTYNVWMRALAAVNDISGAERVIEEMKR 84 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 84 (353)
.++-.-+..+...|.++.|.-+.+.+... +..|+. .++..+.+++...+++..|...|++..+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34444566677777787777777665442 112332 1455566777777888888888877654
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.69 E-value=6.9 Score=31.46 Aligned_cols=118 Identities=9% Similarity=-0.063 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH----HHHHHHhcCCCCChhhHHHHH
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE----LKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~~~~p~~~~~~~li 239 (353)
.|.++..=|.+.+++++|.+++..-. ..+.+.|+...|-+ +.+...+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455666777777887777765421 22334455544444 344444566777777777777
Q ss_pred HHHHccCChH-HHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582 240 DYYLRNGDMK-LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 296 (353)
Q Consensus 240 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (353)
..+..-..-+ .=.++++++++...+..+...-++.....+...|.+.|++.+|+..|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6665432111 12344455544311100001246788888888999999998888755
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.56 E-value=3.6 Score=28.09 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=9.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 018582 204 IGAYAKEGRLENAEELKERARR 225 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~ 225 (353)
.-++.+.|++++|.+..+.+.+
T Consensus 85 Avg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 85 TIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.45 E-value=4.7 Score=27.95 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=44.3
Q ss_pred CCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582 229 DPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 303 (353)
Q Consensus 229 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 303 (353)
.|+..+--....++.+..+ ..+++.+++.+.+.+ | .......|.-++.+.|+++.|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--------CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4555555555666665553 446777777777765 3 34455556667778888888888888777777
Q ss_pred C
Q 018582 304 D 304 (353)
Q Consensus 304 ~ 304 (353)
|
T Consensus 108 P 108 (144)
T 1y8m_A 108 R 108 (144)
T ss_dssp C
T ss_pred C
Confidence 6
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.19 E-value=2.7 Score=32.77 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=28.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
.+.|++++++.....-++. .|.|...-..|+..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455555555555555554 345555555555666666666666555555544
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.88 E-value=16 Score=30.52 Aligned_cols=234 Identities=10% Similarity=0.061 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCC---cchHHHHHHHHHhc-CChhHHHHHHHHHHHcCC-CCCcH---
Q 018582 22 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPD---SYTYNVWMRALAAV-NDISGAERVIEEMKRDGR-VAADW--- 92 (353)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~--- 92 (353)
.+...|...|.+.|+.++..+++...... +.-|- ......++..+... +..+.-.++..+..+... .....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999888888766432 11111 12355667766654 333444444444443210 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHh--CCCCChhHH
Q 018582 93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD-----LSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FPNTANISY 165 (353)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 165 (353)
.+=..++..|...|++.+|.+++..+.+.-...| ...|-.-+..|...+++.++...+...... .+.+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1123689999999999999999998866422222 344666677888999999999999886543 222333322
Q ss_pred H----HHHHHHH-hcCChhHHHHHHHHHHhcCCC---C---cHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCChh
Q 018582 166 L----NMIQVLV-NLKDLPGAEKCFKEWESGCAT---Y---DIRVTNVMIGAYAKEGRLENAEELKE-RARRRGADPNAK 233 (353)
Q Consensus 166 ~----~l~~~~~-~~~~~~~a~~~~~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~ 233 (353)
. .-...+. ..+++..|...|-+..+.-.. | +...|..+.. .. .++..+...++. .....-..|+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhccccccccCCccHH
Confidence 1 1223345 789999988887765421101 1 1223322222 22 233333333322 111111245555
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHH
Q 018582 234 TWEIFSDYYLRNGDMKLAVDCLEKA 258 (353)
Q Consensus 234 ~~~~li~~~~~~~~~~~a~~~~~~~ 258 (353)
.+..++.+| ..+++.....++...
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 566666665 445666665555543
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.59 E-value=22 Score=31.85 Aligned_cols=248 Identities=16% Similarity=0.058 Sum_probs=124.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582 60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139 (353)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (353)
+..+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHH
Confidence 3445556666666655554321 2345555566777788888888888887777665543 44578888888887
Q ss_pred cCCHHH--HHHHHHHHHHhCCCCChhHHHHHHH-----------HHHhc-CChhHHHHHHHHHHhcCCCCcHH---HHHH
Q 018582 140 TGNLSE--VYRIWRSLRLAFPNTANISYLNMIQ-----------VLVNL-KDLPGAEKCFKEWESGCATYDIR---VTNV 202 (353)
Q Consensus 140 ~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~-~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 202 (353)
.|.... ...=++.+...+- ...-..++. ..... .+...+...... ..++.. .+..
T Consensus 149 ~g~lt~~~~~~R~~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 149 SGKQDPLAYLERIRLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAV 220 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHH
Confidence 775543 3333333333321 111111111 10000 111111111110 011111 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHH
Q 018582 203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWE----IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 278 (353)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
.+.-+.+ .+.+.|...+....... ..+..... .+...+...+...++...+....... ++.....-
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~e~ 290 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--------QSTSLIER 290 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--------CCHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--------CChHHHHH
Confidence 2222333 36788888888776543 22332222 22223334443445666666654433 34433444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHH
Q 018582 279 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLK 333 (353)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~ 333 (353)
.++...+.|+++.|...|+.|..... ......--+..++.+.|+ .+..++....
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555577888888888887765332 234445566667777787 3444554443
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.41 E-value=14 Score=29.61 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHH----HHHHHHHhCCCCChhHHHHHH
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR----IWRSLRLAFPNTANISYLNMI 169 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 169 (353)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +.+...+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455555666677777776655421 11223344333333 233334445555555555555
Q ss_pred HHHHhcCChh-HHHHHHHHHH----hcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 018582 170 QVLVNLKDLP-GAEKCFKEWE----SGC--ATYDIRVTNVMIGAYAKEGRLENAEELKE 221 (353)
Q Consensus 170 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (353)
..+......+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|..-|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5554432111 1223333332 221 22367778888888888888888877664
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.91 E-value=18 Score=29.43 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEEL 219 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~ 219 (353)
|+.....+...|.+.+++.+|..-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHH
Confidence 344444445555555555444443
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.47 E-value=11 Score=27.91 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582 72 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR 125 (353)
Q Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (353)
...+..+|..|...|--.--...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555555222233444555555555555555555555555544443
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.12 E-value=10 Score=26.26 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582 90 ADWTTFSNLASIYVEAGLF---EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (353)
|+..+--.+.-+++++.+. .+++.+++.+...++.......-.|.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444433444444444432 23444444444433221222223333444455555555555554444
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.86 E-value=24 Score=29.53 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHccCCCCHHHH---
Q 018582 58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAY--- 130 (353)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--- 130 (353)
....+...|.+.|+.++..+++.....--...+. ......+++.+....+ .+.-.++..+..+..-. +-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3444556666666666666666554432101121 1223445555544322 22223333332211000 11111
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 131 ---QFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-----ISYLNMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 131 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
..++..|...|++.+|.+++..+.+.-...|. ..|..-+..|...+++.++...+...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 13455555666666665555555443111111 12333344455555555555555544
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.80 E-value=20 Score=28.03 Aligned_cols=121 Identities=10% Similarity=0.035 Sum_probs=77.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh----hHHHHHHHHHcc
Q 018582 170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK----TWEIFSDYYLRN 245 (353)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~li~~~~~~ 245 (353)
....+.|+++++++....-++..+. |...-..+++.+|-.|+++.|.+-++...+. .|+.. +|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 3456778888888888888877644 8888888999999999999999988888765 34332 33333332
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH--HhcCChhhHHHHHHHHHhcCC
Q 018582 246 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF--EQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+..=.+...-+..|.....| ..-...++.+. ...|+.++|..+-..+.+.-+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~-~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGEN-EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHcCCCCCCCCCCC-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 22223333333332221222 23444555554 456999999998888876544
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.69 E-value=16 Score=27.01 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
...+.++|..|...|+- .--...|......+...|++.+|.++|+.-++.+-
T Consensus 95 ~~~p~~if~~L~~~~IG-----~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 95 FHESENTFKYMFNKGIG-----TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHHTSS-----TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44555555555555432 12344444445555555555555555555444433
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.63 E-value=9.8 Score=24.42 Aligned_cols=18 Identities=6% Similarity=-0.169 Sum_probs=7.8
Q ss_pred hcCChHHHHHHHHHHHhc
Q 018582 209 KEGRLENAEELKERARRR 226 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~ 226 (353)
+.|..+++...+.++..+
T Consensus 80 rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HTTCHHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 444444444444444433
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.91 E-value=10 Score=24.34 Aligned_cols=49 Identities=20% Similarity=0.060 Sum_probs=20.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582 172 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 226 (353)
+.+.|++++|..+.+.. +.||...|.+|.. .+.|..+++...+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 34444444444443321 2344444443332 2344444444444444433
No 271
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.25 E-value=26 Score=30.48 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc------hHH-HHHHHHHhcCChhHHHHHHHHHHHc
Q 018582 21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY------TYN-VWMRALAAVNDISGAERVIEEMKRD 85 (353)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 85 (353)
...+|.+++.|...+.++.|..+..+.. ++.+.. +|. .+.+.+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3458999999999999999999998874 222211 222 3456677889999999999988775
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.73 E-value=16 Score=28.34 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=10.6
Q ss_pred ccCChHHHHHHHHHHHHcCC
Q 018582 244 RNGDMKLAVDCLEKAIDTGR 263 (353)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~ 263 (353)
..++.....++++.+.+.|.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGA 210 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTC
T ss_pred HccccchHHHHHHHHHHcCC
Confidence 34444444556666666653
No 273
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.64 E-value=12 Score=28.01 Aligned_cols=46 Identities=15% Similarity=0.027 Sum_probs=23.1
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCcch--HHHHHHHHHhcCChhHHHHHHH
Q 018582 31 YAKTGHPEKIPAIIQEMKASSIMPDSYT--YNVWMRALAAVNDISGAERVIE 80 (353)
Q Consensus 31 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 80 (353)
.++.|+.+. ++.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 16 A~~~g~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 16 ATQYGIYER----CRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChHH----HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 455666544 444445555444321 1234555667777665444443
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.62 E-value=16 Score=23.45 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=24.3
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
.+.+.|++++|..+.+.+ +.||...|..+ +-.+.|-.+++..-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 344555555555544332 34444444333 2234555555555555555444
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.26 E-value=25 Score=26.39 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=23.7
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCcch--HHHHHHHHHhcCChhH
Q 018582 29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYT--YNVWMRALAAVNDISG 74 (353)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~ 74 (353)
...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 61 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH
Confidence 344556777766666666665554444321 1123344445565543
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.60 E-value=17 Score=23.35 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=24.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582 136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC 192 (353)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (353)
.+.+.|++++|..+.+.+ +.||...|..+. -.+.|-.+++..-+..+..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 344556666665554433 345554443332 234555555555555555444
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.14 E-value=29 Score=27.18 Aligned_cols=185 Identities=9% Similarity=0.008 Sum_probs=84.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHhc
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT--FSNLASIYVEA 105 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 105 (353)
+...+..|+.+-+ +.+.+.|..++...-.+.+...+..|+.+-+..++ +.| ..++... -.+.+...+..
T Consensus 35 L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g-a~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL----FSG-LDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCC-CCCCCcCCCCCcHHHHHHHc
Confidence 3344556665443 33444554444432233445555667766544444 344 3333211 11234445566
Q ss_pred CCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChhHH
Q 018582 106 GLFEKAERALKELENRNAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGA 181 (353)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 181 (353)
|+.+-+..+++. |..++ ...+.+.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 776655544443 33322 11222334444556665443 3334444433221 233455556677777766
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh
Q 018582 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT 234 (353)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 234 (353)
.-+++.-...... +..-++..+...+..|+. ++.+.+.+.|..|+...
T Consensus 178 ~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 178 ILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 6666553322211 111111122333445554 34555566677666554
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=69.24 E-value=47 Score=27.32 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCC
Q 018582 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR--LENAEELKERARRRGAD 229 (353)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 229 (353)
...++.-|...++.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 566777788888888888888887643222 23334444444444332 34566777777766544
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.43 E-value=14 Score=28.57 Aligned_cols=207 Identities=10% Similarity=-0.023 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHH--HHHHHH
Q 018582 26 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY---TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT--FSNLAS 100 (353)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~ 100 (353)
..+...++.|+.+.+ +.+.+.|..++.. .-.+.+...+..|+.+-+. .+.+.| ..++... -...+.
T Consensus 7 ~~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g-~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHG-ADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTT-CCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcC-CCCcccCCCCCCHHH
Confidence 344455666765443 3444555444422 1123444555667765443 344444 3332210 112334
Q ss_pred HHHhcCCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh------------HH
Q 018582 101 IYVEAGLFEKAERALKELENRNAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI------------SY 165 (353)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~ 165 (353)
..+..|+.+-+ +.+.+.|..++ ...++.+ ...+..|+.+-+ +.+.+.|..++.. .-
T Consensus 78 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 78 LAAIAGSVKLL----KLFLSKGADVNECDFYGFTAF-MEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HHHHHTCHHHH----HHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred HHHHcCCHHHH----HHHHHcCCCCCccCcccCCHH-HHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCC
Confidence 44455665443 34444444432 1122223 333455665433 3344444433321 01
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh--HHHHHH
Q 018582 166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT--WEIFSD 240 (353)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~li~ 240 (353)
.+.+...+..|+.+-+..+++.. +..++ ....+. +...+..+......++++.+.+.|..++... -...+.
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 12344455667766555444421 32222 112222 2333455666566677777777776665422 112334
Q ss_pred HHHccCChHHHHHH
Q 018582 241 YYLRNGDMKLAVDC 254 (353)
Q Consensus 241 ~~~~~~~~~~a~~~ 254 (353)
..+..|+.+-+..+
T Consensus 225 ~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 225 LAVEKKHLGLVQRL 238 (285)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHH
Confidence 44456665544333
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.05 E-value=30 Score=24.67 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=22.4
Q ss_pred HHHHHHHHHHccCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582 111 AERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 160 (353)
Q Consensus 111 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (353)
+..+|..|...|+-.. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444443322 2334444444444555555555555544444444
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.28 E-value=30 Score=24.32 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+.++|..|...|+- .-....|......+...|++++|.++|+.-++.+.
T Consensus 84 p~~if~~L~~~~IG-----~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIG-----TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTT-----TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCc-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 45555555555532 12344455555555555556666555555555443
No 282
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=65.96 E-value=28 Score=24.28 Aligned_cols=38 Identities=3% Similarity=0.104 Sum_probs=16.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 106 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (353)
..+..-.|.++++.+.+.+ ...+..|.-.-+..+.+.|
T Consensus 38 ~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCC
Confidence 3334445555555554443 2333333333444444444
No 283
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.25 E-value=54 Score=26.62 Aligned_cols=167 Identities=12% Similarity=0.067 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCcHHHHHHH
Q 018582 23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERV----IEEMKRDGRVAADWTTFSNL 98 (353)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~l 98 (353)
.|.++..-|.+++++++|++++-.-. ..+.+.|+...|-++ ++...+.+ .++|......|
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 45666667777777777777654432 123444554444333 34444555 77777777777
Q ss_pred HHHHHhcCCHHH-HHHHHHHH----HHcc--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582 99 ASIYVEAGLFEK-AERALKEL----ENRN--AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 171 (353)
Q Consensus 99 ~~~~~~~~~~~~-a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (353)
+..+.....-+- =.++++++ .+.| ..-|+.....+...|.+.+++.+|...|- .|..++...|..++--
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHH
Confidence 777766553221 12233332 1222 33466677777888888888888777662 1333333566555544
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582 172 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 224 (353)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (353)
+...+...+ .+...-.++ --|.-.++...|..+++...
T Consensus 177 w~~~~~~~e--------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 177 WYKQDESHT--------------APLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTSCGGG--------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcc--------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 443332111 122222222 33455677777777665544
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.65 E-value=47 Score=25.35 Aligned_cols=29 Identities=24% Similarity=0.093 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582 196 DIRVTNVMIGAYAKEGRLENAEELKERAR 224 (353)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 224 (353)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 44445555666777777777777665543
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.25 E-value=9.5 Score=28.68 Aligned_cols=69 Identities=7% Similarity=0.007 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCCchh--HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcch---HHHHHHHHHhcCChhHHHHH
Q 018582 6 EALLEKMKELNLGFSSMP--FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT---YNVWMRALAAVNDISGAERV 78 (353)
Q Consensus 6 ~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~ 78 (353)
.++++.+.+.|..++... -...+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 95 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence 356677777776554322 123455556667654 4444555554443221 12334445556665544333
No 286
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=62.94 E-value=30 Score=23.60 Aligned_cols=57 Identities=5% Similarity=0.038 Sum_probs=25.0
Q ss_pred HHccCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 018582 119 ENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (353)
.+.|..++. .-..++..+...+ ..-.|.++++.+.+.++..+..|..-.++.+...|
T Consensus 10 ~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444332 2233334444443 44555555555555544444444444444444443
No 287
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=62.48 E-value=36 Score=23.56 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=15.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582 139 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 175 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (353)
..+..-.|.++++.+.+.++..+..|..-.++.+...
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 3333444444444444444333333333333333333
No 288
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=61.71 E-value=33 Score=24.31 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=28.0
Q ss_pred HHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCC
Q 018582 119 ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 177 (353)
.+.|...+. .-..++..+...+..-.|.++++.+.+. ++..+..|.---++.+...|-
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444432 3334444555555555555666655555 444444444444444444443
No 289
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=60.74 E-value=23 Score=28.85 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 018582 95 FSNLASIYVEAGLFEKAERALKELE 119 (353)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (353)
...++.=|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3567777788888888888888774
No 290
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.34 E-value=39 Score=23.35 Aligned_cols=58 Identities=9% Similarity=0.065 Sum_probs=25.7
Q ss_pred HHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 018582 12 MKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 70 (353)
Q Consensus 12 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 70 (353)
+.+.|++++. .=..++..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4445543332 223334444444445555555555555443334444444444444443
No 291
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=60.12 E-value=41 Score=23.46 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 018582 131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (353)
..++..+...+.+-.|.++++.+.+.++..+..|.--.+..+...|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444444445555556665555554444444444444444444
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.67 E-value=27 Score=26.38 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 249 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
+.+.++|..|...|+- .-....|......+...|++.+|..+|+.-++.+-.|- ..|-..|.
T Consensus 131 ~~p~~if~~L~~~~IG-----~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~----~rL~~~~~ 192 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG-----QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF----LRFQQKYQ 192 (223)
T ss_dssp SCHHHHHHHHHHTTCS-----TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH----HHHHHHHH
T ss_pred CCHHHHHHHHHHCCcc-----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH----HHHHHHHH
Confidence 5677999999999863 24577888899999999999999999999888766553 44444443
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=59.23 E-value=15 Score=23.48 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 018582 7 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERV 78 (353)
Q Consensus 7 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 78 (353)
.+++.+.+.|+ .+..-...+-. .......++|.++++.+...| ..+|..++.++...++...|..+
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHHHH
Confidence 46788888776 44444443332 001246788999999888765 46788888888776776655443
No 294
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=59.22 E-value=48 Score=23.96 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 216 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 216 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
...++..+.+.|.--|...-..++....+.|.+ ....+-.++...|
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KG 97 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKG 97 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcC
Confidence 344445555555443333333444444333221 1234444555555
No 295
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=59.21 E-value=34 Score=23.87 Aligned_cols=58 Identities=7% Similarity=0.038 Sum_probs=26.6
Q ss_pred HHHccCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 018582 118 LENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 176 (353)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (353)
+.+.|..++. .-..++..+...+ ..-.|.++++.+.+.++..+..|..-.+..+...|
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444333 2223334443333 44455555555555554444444444444444444
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=58.98 E-value=45 Score=26.04 Aligned_cols=175 Identities=7% Similarity=-0.009 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchH--HHHHHHHHhcCChhHHHHHHHHHHH
Q 018582 7 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTY--NVWMRALAAVNDISGAERVIEEMKR 84 (353)
Q Consensus 7 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 84 (353)
++++.+.+.|..++...-.+.+...+..|+.+-+ +.+.+.|..++.... .+.+...+..|+.+-+.-+++.
T Consensus 45 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--- 117 (285)
T 3kea_A 45 RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--- 117 (285)
T ss_dssp HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---
Confidence 4566666666555443223344455566765433 444556665554321 2234445567777655555443
Q ss_pred cCCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582 85 DGRVAADWT---TFSNLASIYVEAGLFEKAERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 160 (353)
Q Consensus 85 ~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (353)
| ..++.. -+.+.+...+..|+.+-+.. +.+.|..+ +...-.+.+...+..|..+-+.-+++.-..... .
T Consensus 118 -g-a~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~ 190 (285)
T 3kea_A 118 -N-WRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-N 190 (285)
T ss_dssp -C-GGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-T
T ss_pred -C-CCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-c
Confidence 4 333321 11235555666777654444 44444433 211223344455677887766666654322221 1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHH
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 199 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (353)
+..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 191 ~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 191 NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 222222223344455654 45555666777666543
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.69 E-value=59 Score=24.83 Aligned_cols=89 Identities=8% Similarity=0.002 Sum_probs=39.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 018582 62 WMRALAAVNDISGAERVIEEMKRDGR-VAA----DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 136 (353)
Q Consensus 62 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (353)
-++.+....++++|.+++++..+.-. .++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 34556666777777776665544200 111 001111222222222222233333333321 2344445555566
Q ss_pred HHccCCHHHHHHHHHHH
Q 018582 137 YGQTGNLSEVYRIWRSL 153 (353)
Q Consensus 137 ~~~~~~~~~a~~~~~~~ 153 (353)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66666666666665543
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.57 E-value=44 Score=23.41 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 018582 96 SNLASIYVEAGLFEKAERALKELE 119 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~ 119 (353)
..++.=|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555666666666666666653
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=58.08 E-value=39 Score=23.35 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=28.0
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 018582 11 KMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 70 (353)
Q Consensus 11 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 70 (353)
.+.+.|++++.. =..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344555544332 233334444444 5566666666665544444444444444444444
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=58.08 E-value=41 Score=22.89 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=30.6
Q ss_pred HHhcCCCCCchhHHHHHHHHHhcC-CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 12 MKELNLGFSSMPFNSLMTLYAKTG-HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 12 m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
+.+.|++++. .=..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4555654332 2334444555444 566677777776665544455555555555555443
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.06 E-value=48 Score=23.63 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582 251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304 (353)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (353)
+.++|..|...|+- .--...|......+...|++.+|.++|+.-++.+.
T Consensus 79 p~~if~~L~~~~IG-----~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIG-----VSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSS-----TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcc-----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34455555555432 12334444444445555555555555555544443
No 302
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.47 E-value=44 Score=23.28 Aligned_cols=60 Identities=5% Similarity=-0.031 Sum_probs=30.4
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhcC-CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 11 KMKELNLGFSSMPFNSLMTLYAKTG-HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 11 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
.+.+.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 7 ~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 345555543322 233444444444 555666666666665544444555455555555544
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.08 E-value=1.4e+02 Score=28.56 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=68.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCC--------------
Q 018582 203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK-------------- 268 (353)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------- 268 (353)
++..+...|.++-+.++..- .+-+...--.+..+|...|++++|.++|+++- .|+.....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 55666667777655543322 22233333356778899999999999998753 23321110
Q ss_pred Cc---ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh----hhhHHHHHHHHHcC
Q 018582 269 WV---PSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV----EVFEPLIRTYAAAG 322 (353)
Q Consensus 269 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 322 (353)
.. ....-|..++..+-+.+-++.+.++-+..++.-...|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00 11235677778888888888888887777763322333 35666666666554
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=56.14 E-value=27 Score=24.22 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhCCCCChhH
Q 018582 144 SEVYRIWRSLRLAFPNTANIS 164 (353)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~ 164 (353)
-.|.++++.+.+.++..+..|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~T 54 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINIST 54 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHH
T ss_pred CCHHHHHHHHHhhCCCCCHhH
Confidence 344444444444433333333
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.48 E-value=55 Score=23.23 Aligned_cols=51 Identities=6% Similarity=0.038 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHHHHccCCC--CHHHHHHHHH-H-----HHccCCHHHHHHHHHHHHH
Q 018582 105 AGLFEKAERALKELENRNAHR--DLSAYQFLIT-L-----YGQTGNLSEVYRIWRSLRL 155 (353)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 155 (353)
.|++-+|.++++.+-.....+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777775554444 3445555555 1 2346777777777776544
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.43 E-value=47 Score=22.45 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=10.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 018582 167 NMIQVLVNLKDLPGAEKCFKEW 188 (353)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~ 188 (353)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444445555555555544
No 307
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=54.26 E-value=15 Score=28.10 Aligned_cols=56 Identities=7% Similarity=0.071 Sum_probs=32.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCcch-------HHHHHHHHH--hcCChhHHHHHHHHHH
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYT-------YNVWMRALA--AVNDISGAERVIEEMK 83 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 83 (353)
+...++.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3345567888888778877777665555332 233333322 5577776666666543
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.74 E-value=52 Score=24.84 Aligned_cols=54 Identities=6% Similarity=0.086 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHccCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh
Q 018582 109 EKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 162 (353)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 162 (353)
+.+..+|..|...|+-.. ...|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 577789999988776543 556788888889999999999999998888777743
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.37 E-value=49 Score=22.35 Aligned_cols=62 Identities=26% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHHhCC
Q 018582 96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN--LSEVYRIWRSLRLAFP 158 (353)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 158 (353)
..++.=|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34556666666666666666665421111 12223333334433321 2345555555554443
No 310
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=52.95 E-value=30 Score=20.11 Aligned_cols=54 Identities=9% Similarity=0.021 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 329 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 329 (353)
.++.++..++...-.+++...+.+..+.|. .+...|..-++.+++..-...++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaReQF~~Rali 57 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQQFLVRWHI 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888887788999999999999998 899999988888887554444444
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=51.39 E-value=23 Score=20.15 Aligned_cols=29 Identities=7% Similarity=0.138 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 018582 38 EKIPAIIQEMKASSIMPDSYTYNVWMRAL 66 (353)
Q Consensus 38 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 66 (353)
++|.+.|.+|++..-.++..||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555565555443334445565555555
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=50.91 E-value=55 Score=23.18 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCcHHHHHHHHHHHHhcCCH
Q 018582 48 KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD--GRVAADWTTFSNLASIYVEAGLF 108 (353)
Q Consensus 48 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 108 (353)
.+.|++++.. -..++..+...+..-.|.++++.+.+. + ...+..|.-.-++.+.+.|-+
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 4456665433 334455555666666777777777765 4 445555554555666666654
No 313
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.32 E-value=78 Score=23.49 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHR 125 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (353)
.+...++.|+.+....+++.+...+..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4445556666666666666555544443
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.18 E-value=63 Score=22.64 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC----ChHHHHHHHHhCCCccCHhH
Q 018582 274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR----TSPVMLRRLKMEKVEVSEAS 343 (353)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~~~~~~m~~~~~~p~~~~ 343 (353)
.....++.=|...|+.++|.+.++++..-.. ....+...+..++-+.++ ....++..+...|+-+....
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567788889999999999999988743211 223444555555555444 23355666666666555544
No 315
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.68 E-value=76 Score=23.15 Aligned_cols=93 Identities=16% Similarity=0.006 Sum_probs=41.9
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
++...-...+.++.+.++.+.. ..+..+.. .++..+-...+.++.+.|.. ++...+..+.+ .++...-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444455555555543322 22222222 23444445555555555543 23333434332 23444445555
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
.++.+.+. ..+...+..+.+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d 185 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET 185 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHhC
Confidence 55555554 3444555555443
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.30 E-value=71 Score=22.68 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=38.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCC--ChhhHHHHHH-H-----HHccCChHHHHHHHHHHHHc
Q 018582 209 KEGRLENAEELKERARRRGADP--NAKTWEIFSD-Y-----YLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~~ 261 (353)
..|++-+|-++++..-.....+ ....|..||+ . ..+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3488889999998887654445 4556777777 2 24579999999999988764
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.11 E-value=23 Score=27.05 Aligned_cols=23 Identities=0% Similarity=-0.125 Sum_probs=14.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhc
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKA 302 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~ 302 (353)
+...++.|+.+-+..++++-...
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCCc
Confidence 33445667777777777665443
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.85 E-value=63 Score=23.21 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCCCcHHHH--HHHHHHHHhcCChHHHH
Q 018582 181 AEKCFKEWESGCATYDIRVT--NVMIGAYAKEGRLENAE 217 (353)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~ 217 (353)
-.++.+.+.+.|..++.... .+-+....+.|+.+-+.
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~ 195 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHH
Confidence 35556666665554432211 12233344556554433
No 319
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.65 E-value=1.2e+02 Score=24.99 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC----ChHHHHHHHHhCCCccCHhHHHH
Q 018582 274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR----TSPVMLRRLKMEKVEVSEASKKL 346 (353)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~~~~~~m~~~~~~p~~~~~~~ 346 (353)
.....++.=|...|+.++|.+.++++..-.. ....+...+..++-+.++ ....++..+...|+-+......-
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3467888889999999999999988753211 223445555555554433 23355666676676655544333
No 320
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=45.91 E-value=56 Score=20.82 Aligned_cols=33 Identities=3% Similarity=0.009 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
.|.++.++...-|+.|+..+..-++..|..-+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 456666666666777777666666666655553
No 321
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=45.37 E-value=1.2e+02 Score=24.54 Aligned_cols=217 Identities=10% Similarity=0.022 Sum_probs=100.2
Q ss_pred CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHH
Q 018582 20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTY--NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 97 (353)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 97 (353)
|..-++.|. ..+..|+.+.+. .+.+.|..++.... .+.+...+..|+.+-+.-+ .+.| ..++...-..
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g-~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVR----RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVG-EVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHH----HHHC-CCCCCBTTBC
T ss_pred CCCCCCHHH-HHHHcCCHHHHH----HHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHH----HHCC-CCccccCCCC
Confidence 444445544 445567655444 44455655554321 2344455566776554444 4444 2222211223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCH--------------------HHHHHHHHHHHccC--CHHHHHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHRDL--------------------SAYQFLITLYGQTG--NLSEVYRIWRSLRL 155 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 155 (353)
.+...+..|+.+-+..+++.....|..++. .-.+.|. ..+..| ..+-+. .+.+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~----~Ll~ 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIK----ILVQ 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHH----HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHH----HHHH
Confidence 455566778888877777765444443322 1123333 334455 444333 3333
Q ss_pred hCCCCChhH--HHHHHHHHHhcCChhHHHHHHHHHHh-cCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 018582 156 AFPNTANIS--YLNMIQVLVNLKDLPGAEKCFKEWES-GCATY---DIRVTNVMIGAYAKEGRLENAEELKERARRRGAD 229 (353)
Q Consensus 156 ~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (353)
.|..++... -.+.+...+..|+.+-+..+++.-.. .+..+ +..-.+. +...+..|+.+ +.+.+.+.|..
T Consensus 162 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~gad 236 (364)
T 3ljn_A 162 LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWED----VAMRFVEMGID 236 (364)
T ss_dssp HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHH----HHHHHHTTTCC
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHH----HHHHHHHcCCC
Confidence 454433221 12334455567777766665554221 00001 1111122 23344566654 34444455655
Q ss_pred CChh---hHHHHHHHHHccCChHHHHHHHHH
Q 018582 230 PNAK---TWEIFSDYYLRNGDMKLAVDCLEK 257 (353)
Q Consensus 230 p~~~---~~~~li~~~~~~~~~~~a~~~~~~ 257 (353)
++.. -.+.| ...+..|+.+-+..+++.
T Consensus 237 ~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 237 VNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 5432 22233 333455776655555544
No 322
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=45.18 E-value=15 Score=20.95 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=12.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCc
Q 018582 70 NDISGAERVIEEMKRDGRVAAD 91 (353)
Q Consensus 70 ~~~~~a~~~~~~~~~~~~~~~~ 91 (353)
-|++.|...|.++...|.++|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 3555666666666555544444
No 323
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.06 E-value=32 Score=28.90 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=7.5
Q ss_pred HHHHHHhCCCccCH
Q 018582 328 MLRRLKMEKVEVSE 341 (353)
Q Consensus 328 ~~~~m~~~~~~p~~ 341 (353)
+.+.+.+.|..++.
T Consensus 326 ~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 326 LVKFLLQHQADVNA 339 (437)
T ss_dssp HHHHHHHTTCCTTC
T ss_pred HHHHHHhcCCCCCC
Confidence 44455566665543
No 324
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.55 E-value=28 Score=19.79 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=8.2
Q ss_pred hcCChhHHHHHHHHHHH
Q 018582 68 AVNDISGAERVIEEMKR 84 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~ 84 (353)
..|+++.|...+-.|..
T Consensus 35 ~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGE 51 (59)
T ss_dssp TTTCHHHHHHHHHHSSC
T ss_pred cCCCHHHHHHHHHcCcC
Confidence 34455555555544443
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.44 E-value=32 Score=24.82 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCCCCh
Q 018582 216 AEELKERARRRGADPNA 232 (353)
Q Consensus 216 a~~~~~~~~~~~~~p~~ 232 (353)
-.++.+.+.+.|..++.
T Consensus 157 ~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 157 YQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 35556666666665543
No 326
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.33 E-value=71 Score=23.60 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 018582 98 LASIYVEAGLFEKAERALKE 117 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~ 117 (353)
.+...++.|+.+....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35555667777777766665
No 327
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.28 E-value=79 Score=26.44 Aligned_cols=70 Identities=7% Similarity=0.092 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCCchh--HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcch--HHHHHHHHHhcCChhHHHHHH
Q 018582 6 EALLEKMKELNLGFSSMP--FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT--YNVWMRALAAVNDISGAERVI 79 (353)
Q Consensus 6 ~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~ 79 (353)
.++++.+.+.|..++... ....+...+..|+.+-+.-+ .+.|..++... -.+.+...+..|+.+-+.-++
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 100 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 356667777776555332 12334444556665443333 33343333221 122334445556655443333
No 328
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=43.18 E-value=2e+02 Score=28.68 Aligned_cols=47 Identities=6% Similarity=0.030 Sum_probs=25.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582 244 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299 (353)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (353)
.++++-.|++++.++.+.. |+...|..++..+...| |+....+.+++
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--------~~~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--------RTRDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--------CCHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 4566666666666666654 55556655555554443 44444444443
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.92 E-value=55 Score=22.05 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 26 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444455555566666666666665544445555555555555543
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=42.80 E-value=53 Score=20.82 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH
Q 018582 107 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 145 (353)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (353)
..++|.++++.+...|+. +|..++.++...|...-
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHHH
Confidence 455555555555544433 55555555544444333
No 331
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.32 E-value=51 Score=22.56 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 44555555555666777777777766544555555555555555554
No 332
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.06 E-value=53 Score=22.46 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
..++..+...++.-.|.++++.+.+.++..+..|-..-++.+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 44556666666778888999988887776777777777777777765
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.06 E-value=56 Score=22.02 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=31.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582 278 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 323 (353)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (353)
.++..+...+..-.|.++++.+.+.++..+..|-..-++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445555566677888888888877766666666666666666664
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.36 E-value=57 Score=19.59 Aligned_cols=60 Identities=7% Similarity=-0.007 Sum_probs=31.1
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhcC-CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 018582 11 KMKELNLGFSSMPFNSLMTLYAKTG-HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 71 (353)
Q Consensus 11 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 71 (353)
.+.+.|++.+.. -..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~-r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 345556544432 234445554443 455666666666665444455555555555555443
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.47 E-value=1.7e+02 Score=27.88 Aligned_cols=49 Identities=10% Similarity=-0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccC
Q 018582 198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNG 246 (353)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~ 246 (353)
.-|..++..+-+.+-++.+.++-+...+.--.-|. ..|..++++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 47788999999999999999988887754212122 35667777766544
No 336
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.41 E-value=33 Score=25.62 Aligned_cols=207 Identities=12% Similarity=0.011 Sum_probs=89.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHH
Q 018582 28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYT--YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT--FSNLASIYV 103 (353)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 103 (353)
+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+ .+.| ..++... -...+...+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g-~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL----IKAG-ALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH----HTTT-CCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHH----HhCC-CCCCCCCCCCCcHHHHHH
Confidence 33445556654 4445555665554321 11234445566766544443 3444 3222111 112344455
Q ss_pred hcCCHHHHHHHHHHHHHcc-CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCC
Q 018582 104 EAGLFEKAERALKELENRN-AHR---DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS--YLNMIQVLVNLKD 177 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 177 (353)
..|+.+-+..++ +.+ ..+ +....+.+ ...+..|+.+- ++.+.+.|..++... -.+.+...+..|+
T Consensus 86 ~~~~~~~~~~Ll----~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 86 KKGHYEVVQYLL----SNGQMDVNCQDDGGWTPM-IWATEYKHVDL----VKLLLSKGSDINIRDNEENICLHWAAFSGC 156 (237)
T ss_dssp HTTCHHHHHHHH----TTTCCCTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HcCCHHHHHHHH----hCCCCCcccCCCCCCCHH-HHHHHcCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence 666655444433 333 111 11122222 33344555543 334444554433211 1123334445566
Q ss_pred hhHHHHHHHHHHhcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHccCChHHHHH
Q 018582 178 LPGAEKCFKEWESGCATYDIRV--TNVMIGAYAKEGRLENAEELKERARRRGADPNAKT--WEIFSDYYLRNGDMKLAVD 253 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~ 253 (353)
.+ +++.+.+.|..++... -.+.+...++.|+.+-+ +.+.+.|..++... -.+-+......|+...+++
T Consensus 157 ~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 157 VD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp HH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 54 3444444444433211 01223344455665433 33444555443221 1123344456677777777
Q ss_pred HHHHHHH
Q 018582 254 CLEKAID 260 (353)
Q Consensus 254 ~~~~~~~ 260 (353)
+.+.+.+
T Consensus 229 l~~~l~d 235 (237)
T 3b7b_A 229 MSKALQD 235 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 7777654
No 337
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=39.61 E-value=68 Score=20.01 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 018582 40 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 111 (353)
Q Consensus 40 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 111 (353)
...+++.+.+.|+ .+..-+..+-. .....+.|..+++.+.+.| ...|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG-----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKD-----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC-----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcC-----HHHHHHHHHHHHHcCHHHHH
Confidence 4455555555542 22222222221 2455666777776665544 34556666666665554333
No 338
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.33 E-value=50 Score=21.98 Aligned_cols=41 Identities=2% Similarity=-0.066 Sum_probs=18.4
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018582 44 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 84 (353)
Q Consensus 44 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 84 (353)
|+++.+..+.|+...--.-+..+...++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444434433333222223334455566666666555554
No 339
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=37.14 E-value=1.8e+02 Score=25.43 Aligned_cols=30 Identities=0% Similarity=-0.190 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCA 193 (353)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (353)
....+-..|.+.+++-.|-+++..+...+.
T Consensus 219 ~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 219 ISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp HHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 445566677777777777777777765543
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.09 E-value=1e+02 Score=22.67 Aligned_cols=54 Identities=7% Similarity=-0.040 Sum_probs=28.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC---------ChhhHHHHHHHHHccCChHHHHHHHHHH
Q 018582 204 IGAYAKEGRLENAEELKERARRRGADP---------NAKTWEIFSDYYLRNGDMKLAVDCLEKA 258 (353)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~~~~~~~~p---------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 258 (353)
+...+..|+.+-+..+++.+.+.|..+ |..-.+. +...++.|+.+-+..+++.-
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 444456677777767777777666433 2222222 33334556665555554443
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.50 E-value=2.1e+02 Score=24.36 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=47.7
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582 103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL-----SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 177 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (353)
.+.++.+.|+..+.+|.+.|..|....-..+..+.-.-|.- .-|...++.....|.+-........+-.++..-+
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pk 345 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPK 345 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCc
Confidence 35678888999999998888777666666666666665542 3445555555555552222233333333444444
Q ss_pred hhHHHHHHH
Q 018582 178 LPGAEKCFK 186 (353)
Q Consensus 178 ~~~a~~~~~ 186 (353)
...+...++
T Consensus 346 sn~~~~a~~ 354 (447)
T 3pvs_A 346 SNAVYTAFK 354 (447)
T ss_dssp CCHHHHHHH
T ss_pred chHHHHHHH
Confidence 444433333
No 342
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.41 E-value=2.3e+02 Score=24.78 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC---C--HHHH-HHHHHHHHccCCHHHHHHHHHHHHHhC
Q 018582 91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHR---D--LSAY-QFLITLYGQTGNLSEVYRIWRSLRLAF 157 (353)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (353)
....+|.+++.|...+.+++|..+..+..- +.. + ...| -.+...+.-.+++.+|.+.+......-
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 356788999999999999999999998741 111 1 1122 223456677899999999888876543
No 343
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.40 E-value=1.3e+02 Score=22.18 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=24.2
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC
Q 018582 103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 141 (353)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (353)
.+..+.+.|+-.+-+|.+.| .|....-..++.+.-.-|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34567777777777777777 655555555555555544
No 344
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.83 E-value=1.3e+02 Score=21.68 Aligned_cols=93 Identities=17% Similarity=0.011 Sum_probs=43.6
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
++...-...+.++.+.++.+....+ ..+.. .++..+-...+.++.+.+.. ++...+..+.. .++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444555555555554332222 22222 23444555555566655543 33333444333 23445555555
Q ss_pred HHHHccCChHHHHHHHHHHHHc
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
.++...|. +.+...+..+.+.
T Consensus 160 ~aL~~~~~-~~~~~~L~~~l~d 180 (201)
T 3ltj_A 160 DALGEIGG-ERVRAAMEKLAET 180 (201)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHhC
Confidence 55555554 3355555555543
No 345
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.73 E-value=1.5e+02 Score=23.91 Aligned_cols=196 Identities=10% Similarity=0.008 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCCCCchh---HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 6 EALLEKMKELNLGFSSMP---FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 82 (353)
Q Consensus 6 ~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 82 (353)
.++++.+.+.|..++... ++. +...+..|+.+ +.+.+.+.|..++...-...+...+..|+.+-+..+++..
T Consensus 33 ~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 33 TDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 356667777776554432 333 34445566654 3444455555454433333455566788888888887775
Q ss_pred HHcCCCCCcHH-------------------HHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCH---HHHHHHHHHHH
Q 018582 83 KRDGRVAADWT-------------------TFSNLASIYVEAG--LFEKAERALKELENRNAHRDL---SAYQFLITLYG 138 (353)
Q Consensus 83 ~~~~~~~~~~~-------------------~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 138 (353)
...| ..++.. .-.+.+...+..| +.+-+..+++ .|..++. .-.+.| ...+
T Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L-~~A~ 181 (364)
T 3ljn_A 108 KERG-QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ----LGASPTAKDKADETPL-MRAM 181 (364)
T ss_dssp HHHT-CCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH----HTCCTTCCCTTSCCHH-HHHH
T ss_pred cccC-CCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH----cCCCCcccCCCCCCHH-HHHH
Confidence 5545 333330 0012444455666 5554444443 3444332 222333 3344
Q ss_pred ccCCHHHHHHHHHHHHHhCCC-----CC---hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH---HHHHHHHHH
Q 018582 139 QTGNLSEVYRIWRSLRLAFPN-----TA---NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR---VTNVMIGAY 207 (353)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~ 207 (353)
..|+.+-+..+++ .|.. ++ ..-. +.+...+..|+.+-+ +.+.+.|..++.. -.+ -+...
T Consensus 182 ~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v----~~Ll~~gad~~~~d~~g~t-pL~~A 251 (364)
T 3ljn_A 182 EFRNREALDLMMD----TVPSKSSLRLDYANKQGN-SHLHWAILINWEDVA----MRFVEMGIDVNMEDNEHTV-PLYLS 251 (364)
T ss_dssp HTTCHHHHHHHHH----HCSCSSSCCTTCCCTTCC-CTTHHHHTTTCHHHH----HHHHTTTCCTTCCCTTSCC-HHHHH
T ss_pred HcCCHHHHHHHHh----cccccccccccccCCCCC-cHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCC-HHHHH
Confidence 5677665544444 3322 11 1111 223344566766544 4444455444321 122 23344
Q ss_pred HhcCChHHHHHHHHH
Q 018582 208 AKEGRLENAEELKER 222 (353)
Q Consensus 208 ~~~g~~~~a~~~~~~ 222 (353)
+..|+.+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 556777666666554
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.72 E-value=1.8e+02 Score=23.53 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHH
Q 018582 24 FNSLMTLYAKTGHPEKIPAIIQEMK 48 (353)
Q Consensus 24 ~~~ll~~~~~~~~~~~a~~~~~~m~ 48 (353)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667888888999999988887764
No 347
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.57 E-value=44 Score=24.02 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=51.0
Q ss_pred CcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHH
Q 018582 269 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLR 330 (353)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 330 (353)
..|....++.++..++...-.+++...+.+....|. .+..+|.--++.+++..-+..++..
T Consensus 107 v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~~ral~~ 167 (174)
T 2p22_A 107 AVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFLVRWHIQ 167 (174)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999899999999999999998 9999999999999886555555543
No 348
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=32.94 E-value=3.2e+02 Score=25.87 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCH---HHHHHHHHHHHHcc----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582 96 SNLASIYVEAGLF---EKAERALKELENRN----AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM 168 (353)
Q Consensus 96 ~~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (353)
..++...|+.|.. +.|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++..+... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4567777888774 56777887765432 445532 233333345576666566666665542 33344567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHh---cCCCCChhhHHHHHHHHHc
Q 018582 169 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-GRLENAEELKERARR---RGADPNAKTWEIFSDYYLR 244 (353)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~ 244 (353)
+.+++...+.+...++++............... ++.+.... ...+.|++.+.+=-+ .........+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888888888888888776543222222333 33333332 223445555443111 1122344567778887776
Q ss_pred cCChHHHHHHHHHHHHcC
Q 018582 245 NGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~ 262 (353)
.-.-++-++-++...+..
T Consensus 844 ~~~t~~~~~~~~~f~~~~ 861 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKNN 861 (909)
T ss_dssp TCCSHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHhhC
Confidence 655555555556655543
No 349
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.74 E-value=2.3e+02 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=17.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582 90 ADWTTFSNLASIYVEAGLFEKAERALKELEN 120 (353)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (353)
.+......++.. ..|+...+..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 444555555544 35777777777776643
No 350
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.54 E-value=1.3e+02 Score=21.10 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582 110 KAERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 161 (353)
Q Consensus 110 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (353)
.+..+|..|...|+-. -...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3677777776666543 345566777777778888888888887777666663
No 351
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.82 E-value=3.4e+02 Score=25.75 Aligned_cols=159 Identities=9% Similarity=-0.062 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCh---hHHHHHHHHHHHcC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582 61 VWMRALAAVNDI---SGAERVIEEMKRDG---RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 134 (353)
Q Consensus 61 ~ll~~~~~~~~~---~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (353)
.++...|..|+. +.|.+.|+.....+ .++||.. ..+...-.+.|..++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 456667777764 46778888776542 1455533 23444445667777766777777664 3445567788
Q ss_pred HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChhHHHHHHHH----HHhcCCCCcHHHHHHHHHHHHh
Q 018582 135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-DLPGAEKCFKE----WESGCATYDIRVTNVMIGAYAK 209 (353)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~ 209 (353)
.+++...+.....++++.............. .++.+..... ..+.+.+.+.. +.+ ....+...+..++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~-~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQ-DYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTT-SSSSCCCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHH
Confidence 8888888988888888776543321222222 3344443321 12333333333 111 122233455667777666
Q ss_pred cCChHHHHHHHHHHHhc
Q 018582 210 EGRLENAEELKERARRR 226 (353)
Q Consensus 210 ~g~~~~a~~~~~~~~~~ 226 (353)
.-.-++-.+-++...+.
T Consensus 844 ~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 844 RFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TCCSHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHhh
Confidence 55545555555555443
No 352
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.28 E-value=1.1e+02 Score=24.44 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=21.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 208 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
++.|+.+ +.+.+.+.|..++..+ .+..-++.|+.+ +.+.+++.|
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~G 324 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHG 324 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTT
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCc
Confidence 4455543 3334455666666544 223334455543 344455555
No 353
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.24 E-value=2.6e+02 Score=24.23 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=40.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCC
Q 018582 280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEK 336 (353)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~ 336 (353)
.+.......++.|...|.++....| .+...||.|.......|+.-++++..++..-
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~P-~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCC-CCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 3334444556788888888888888 7778888888888888887777776666553
No 354
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=30.58 E-value=1.2e+02 Score=20.03 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 018582 178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR-RGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 256 (353)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 256 (353)
+.+|..-+++.... ++|......++..+-.. ++.++++.++..+ .|+ ++.++...+....+.|-.+.. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 34444444444333 23444445555544433 4555555555443 344 345555666666665555443 4444
Q ss_pred HHHH
Q 018582 257 KAID 260 (353)
Q Consensus 257 ~~~~ 260 (353)
.|..
T Consensus 77 ~m~~ 80 (119)
T 1wty_A 77 EMLE 80 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 355
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=30.24 E-value=1.7e+02 Score=21.90 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHH
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 293 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 293 (353)
+.+..++..+.+.|.-.|...-...+....+.+.+ ....+-.++...|+ +..+....+..+......+.|.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI--------~~~~I~~al~~~~~~~e~e~a~ 163 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI--------GESDIDDALTQFTPEVQAELAK 163 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC--------CHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC--------CHHHHHHHHHhCCHHHHHHHHH
Confidence 44556666666666664444444555554442111 24455666667773 2222222222110111123344
Q ss_pred HHHHHHHhcCCC-CChhhhHHHHHHHHHcCCChHHHHHHH
Q 018582 294 GFLEILKKAVDD-LGVEVFEPLIRTYAAAGRTSPVMLRRL 332 (353)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~m 332 (353)
.+.++-...... ++.....-++..+.+.|-..+.+...+
T Consensus 164 ~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl 203 (221)
T 3d5l_A 164 KLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIK 203 (221)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444433221111 223345666666666666555444333
No 356
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.85 E-value=1.5e+02 Score=21.16 Aligned_cols=50 Identities=14% Similarity=-0.002 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCCCChhh---HHHHHHHHHccCCh-HHHHHHHHHHHH-cCC
Q 018582 214 ENAEELKERARRRGADPNAKT---WEIFSDYYLRNGDM-KLAVDCLEKAID-TGR 263 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~~~~-~~a~~~~~~~~~-~~~ 263 (353)
....++.+.+.+.|..++... .+..+...+..+.. ..-.++++.+++ .|.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga 145 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL 145 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence 334556666666666554322 10112222222222 334456666666 553
No 357
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.62 E-value=1.5e+02 Score=20.84 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582 214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262 (353)
Q Consensus 214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 262 (353)
+....++..+.+.|...|...-...+....+.| .....+-.++...|
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KG 93 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKG 93 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcC
Confidence 344455555555555544433344444444433 22345555566666
No 358
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.39 E-value=1.6e+02 Score=21.14 Aligned_cols=138 Identities=14% Similarity=-0.045 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240 (353)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 240 (353)
+...-...+.++...+..+....+. .+.. .++..+-...+.++.+.+..+ +...+..+.. .++...-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 4444444455555555443332222 2332 345555566666777766643 3333333332 345555555666
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 320 (353)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (353)
++.+.++. .+...+..+... ++..+-...+.++.+.|.. .+...+..+... ++..+-...+.++.+
T Consensus 130 aL~~~~~~-~~~~~L~~~l~d---------~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 130 ALGEIGDE-RAVEPLIKALKD---------EDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHTCG-GGHHHHHHHTTC---------SSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHhCCH-HHHHHHHHHHcC---------CCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 66666653 344444444432 4555555666666666653 344444444432 334444444444443
No 359
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.01 E-value=1.6e+02 Score=21.08 Aligned_cols=28 Identities=14% Similarity=-0.085 Sum_probs=13.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582 98 LASIYVEAGLFEKAERALKELENRNAHR 125 (353)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 125 (353)
.+...+..|+.+.-.++.+.+.+.|..+
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCC
Confidence 3344444455444445555555555443
No 360
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=28.88 E-value=1.7e+02 Score=21.23 Aligned_cols=140 Identities=14% Similarity=-0.034 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582 160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 239 (353)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 239 (353)
++...-...+.++.+.++.+.. ..+..+.. .++..+-...+.++.+.+..+ +...+..+.. .++...-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHH
Confidence 3444444555555555554333 33333332 345566666777777777643 4444444443 34666666667
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582 240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319 (353)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (353)
.++...++.+ +...+..+.+. ++..+-...+.++.+.+. ..+...+..+.+. ++..+-...+.++.
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~d---------~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALKD---------EDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTTC---------SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHcCCHH-HHHHHHHHHcC---------CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 7777766643 44555555432 566666666677777665 3444444444432 34444444444444
Q ss_pred Hc
Q 018582 320 AA 321 (353)
Q Consensus 320 ~~ 321 (353)
+.
T Consensus 200 ~~ 201 (211)
T 3ltm_A 200 TH 201 (211)
T ss_dssp C-
T ss_pred hc
Confidence 43
No 361
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.57 E-value=1.9e+02 Score=21.39 Aligned_cols=36 Identities=8% Similarity=-0.073 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (353)
+..+.+.|+-.+-+|++.|-.|....-..++.+.-.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 345666666666666666555544444444444433
No 362
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.48 E-value=2.4e+02 Score=22.56 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=11.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 018582 132 FLITLYGQTGNLSEVYRIWRSL 153 (353)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~ 153 (353)
.++.-|...|+.++|.+.++++
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 3444555555555555555555
No 363
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.60 E-value=1.9e+02 Score=24.77 Aligned_cols=29 Identities=7% Similarity=0.163 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582 165 YLNMIQVLVNLKDLPGAEKCFKEWESGCA 193 (353)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (353)
.+.+...|.+.++...+..+++.+...+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~ 207 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSM 207 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCC
Confidence 34445555556666666666555555443
No 364
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.37 E-value=2.1e+02 Score=21.20 Aligned_cols=55 Identities=11% Similarity=-0.110 Sum_probs=33.2
Q ss_pred HccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh-----HHHHHHHHHHhcCC
Q 018582 138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP-----GAEKCFKEWESGCA 193 (353)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~ 193 (353)
.+..+++.|+-++-+|.+.| .|.-..-..++-+.-.-|.-+ .|...++.....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35678888888888888888 665555555555555544322 23444444444443
No 365
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.20 E-value=2.1e+02 Score=21.14 Aligned_cols=34 Identities=12% Similarity=-0.101 Sum_probs=19.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582 68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 102 (353)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (353)
+.+|.+.|+-.+.+|++.| ..|....-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~G-EDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAG-GDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 4466777777777777665 444444333344333
No 366
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.09 E-value=60 Score=23.92 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=15.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHc
Q 018582 239 SDYYLRNGDMKLAVDCLEKAIDT 261 (353)
Q Consensus 239 i~~~~~~~~~~~a~~~~~~~~~~ 261 (353)
+..|.+.|.+++|.+++++....
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHccchHHHHHHHHHHhcC
Confidence 44577888888888888886554
No 367
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.08 E-value=1.8e+02 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 018582 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSI 52 (353)
Q Consensus 24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 52 (353)
.|.|...|.+.++.+.+..+++.+...+.
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~ 207 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSM 207 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCC
Confidence 35555666666666666666666655443
No 368
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.03 E-value=1.9e+02 Score=20.71 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=4.7
Q ss_pred HHHHHHHHccCC
Q 018582 113 RALKELENRNAH 124 (353)
Q Consensus 113 ~~~~~~~~~~~~ 124 (353)
.+++.+.+.|.-
T Consensus 54 ~vl~~L~~~g~l 65 (177)
T 3e3v_A 54 EIINKLIDLDLI 65 (177)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHcCCC
Confidence 333344443333
No 369
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.30 E-value=2.4e+02 Score=21.10 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=23.2
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC
Q 018582 104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 141 (353)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (353)
+..+.+.|+-.+-+|.+.|-.|.-..-..++.+.-.-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45667777777777777666655555555555554444
No 370
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.19 E-value=3.6e+02 Score=23.21 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHH
Q 018582 69 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 148 (353)
Q Consensus 69 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (353)
..+.+.|.++- .+.| .+--...|..-.+.+...|++++|-++--.-.. |+-.+..|.+.+-..-...|...-.+.
T Consensus 342 l~n~~lA~~lA---~R~~-LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNN-LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TCCHHHHHHHH---HHTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred cCCHHHHHHHH---HhcC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 35555554443 2223 555556666666777777777777766555433 344466665555444444455555555
Q ss_pred HHHHHHHhC
Q 018582 149 IWRSLRLAF 157 (353)
Q Consensus 149 ~~~~~~~~~ 157 (353)
+|..+.+.|
T Consensus 417 YF~~Ll~~g 425 (494)
T 1bpo_A 417 YFGILLDQG 425 (494)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHhccC
Confidence 555555554
No 371
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.15 E-value=2.9e+02 Score=22.06 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCC----hHHHHHHHHhCCCccCHhH
Q 018582 275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT----SPVMLRRLKMEKVEVSEAS 343 (353)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~~~~~~m~~~~~~p~~~~ 343 (353)
....++.-|...|+.++|.+.++++..-.. ....++..+..++-+.++. ...++..+...|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456788889999999999999988643111 1223444444455544332 2345566666666554444
No 372
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.13 E-value=2e+02 Score=20.15 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=4.3
Q ss_pred HHHHHHHHccC
Q 018582 113 RALKELENRNA 123 (353)
Q Consensus 113 ~~~~~~~~~~~ 123 (353)
.+++.+.+.|.
T Consensus 51 ~vl~~l~~~g~ 61 (159)
T 3c1d_A 51 RVIAWCHEHGY 61 (159)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHcCC
Confidence 33333333333
No 373
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=22.99 E-value=1.1e+02 Score=18.52 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=21.5
Q ss_pred hHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582 325 SPVMLRRLKMEKVEVSEASKKLLEAICV 352 (353)
Q Consensus 325 ~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 352 (353)
++.+.++....|+.|+.....-+..+|.
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~ 32 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCV 32 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 4566777888888888888888887774
No 374
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=21.88 E-value=1.4e+02 Score=17.86 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 018582 25 NSLMTLYAKTGHPEKIPAIIQEMKASSI 52 (353)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 52 (353)
.++|+--.+-| +..|-.+.++|...|+
T Consensus 27 ~S~lQR~lrIG-YnRAArlid~lE~~Gi 53 (73)
T 2ve8_A 27 ISAVQRKLKIG-YNRAARMIEAMEMAGV 53 (73)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHccC-hHHHHHHHHHHHHCCc
Confidence 44555555555 5677777777777764
No 375
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.37 E-value=1.5e+02 Score=18.00 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=19.6
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582 51 SIMPDSYTYNVWMRALAAVNDISGAERVIEEM 82 (353)
Q Consensus 51 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 82 (353)
+++|+..||+-+..++-+..-..++..+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46778888887777655444444555554444
No 376
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.03 E-value=2.6e+02 Score=20.83 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=31.5
Q ss_pred hHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582 58 TYNVWMRAL---AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 106 (353)
Q Consensus 58 ~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (353)
.+--+|+++ .+.+|.+.|+-.+.+|++.| ..|....-..++.+.-.-|
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~G-EDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAG-EDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhhcc
Confidence 444455554 45588999999999999887 6666555555555554444
No 377
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.85 E-value=3.5e+02 Score=22.20 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH--HHHHHHHHHHHHhCCCC
Q 018582 94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL--SEVYRIWRSLRLAFPNT 160 (353)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~ 160 (353)
....++.=|...|+.++|...++++...........+..+..++ ..++. +.+-.++..+...++-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCC
Confidence 34678889999999999999999985411000122333333333 33322 34556666666655533
No 378
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.56 E-value=53 Score=21.91 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCcchHHHHHHHHHHCCCC-CCcchHHHHHHHHH---hcCChhHHHHHHHHHHHcC
Q 018582 35 GHPEKIPAIIQEMKASSIM-PDSYTYNVWMRALA---AVNDISGAERVIEEMKRDG 86 (353)
Q Consensus 35 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~ 86 (353)
..+++|.+.+..|++.-+. -.+..||..+..+- ..++. ..++..+++.+
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~ 93 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDG 93 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCC
Confidence 3567788888777764222 25667887776553 33444 44555555544
No 379
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.04 E-value=1.8e+02 Score=21.76 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=7.7
Q ss_pred hcCCcchHHHHHHHHHHCC
Q 018582 33 KTGHPEKIPAIIQEMKASS 51 (353)
Q Consensus 33 ~~~~~~~a~~~~~~m~~~~ 51 (353)
+.|+.+.+..+++.+.+.|
T Consensus 11 ~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 11 SRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHcC
Confidence 3344444444444333333
Done!