Query 018583
Match_columns 353
No_of_seqs 194 out of 408
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 3.2E-29 1.1E-33 192.8 7.2 60 180-240 2-61 (64)
2 2yus_A SWI/SNF-related matrix- 93.1 0.29 1E-05 38.1 7.0 47 184-236 17-63 (79)
3 2cu7_A KIAA1915 protein; nucle 90.4 0.98 3.4E-05 33.9 7.1 50 183-238 7-56 (72)
4 2yum_A ZZZ3 protein, zinc fing 87.9 1.2 4.1E-05 33.4 6.0 53 183-238 6-61 (75)
5 2hzd_A Transcriptional enhance 83.1 1.8 6.2E-05 34.7 5.1 56 182-239 3-75 (82)
6 1x41_A Transcriptional adaptor 81.9 6.1 0.00021 28.5 7.2 50 183-237 6-55 (60)
7 2cqr_A RSGI RUH-043, DNAJ homo 80.5 9.5 0.00033 29.3 8.2 51 184-237 17-68 (73)
8 2xag_B REST corepressor 1; ami 78.5 4.1 0.00014 41.5 7.1 53 182-240 377-429 (482)
9 2iw5_B Protein corest, REST co 78.4 3.9 0.00013 38.3 6.5 51 182-238 130-180 (235)
10 2eqr_A N-COR1, N-COR, nuclear 76.8 10 0.00035 27.6 7.1 49 177-231 4-52 (61)
11 2cqq_A RSGI RUH-037, DNAJ homo 75.8 4.8 0.00016 30.9 5.3 48 185-238 8-58 (72)
12 2elk_A SPCC24B10.08C protein; 72.4 18 0.00063 25.9 7.4 49 185-237 9-57 (58)
13 2ba2_A D12_ORF131, hypothetica 68.9 12 0.00043 30.2 6.3 45 268-315 33-77 (85)
14 2yqk_A Arginine-glutamic acid 65.8 6.5 0.00022 29.0 3.9 47 180-231 4-50 (63)
15 1guu_A C-MYB, MYB proto-oncoge 62.9 23 0.00079 24.4 6.1 46 185-235 3-48 (52)
16 2dim_A Cell division cycle 5-l 62.9 30 0.001 25.3 7.1 49 182-235 6-54 (70)
17 1ity_A TRF1; helix-turn-helix, 62.1 34 0.0012 25.0 7.3 54 181-237 6-59 (69)
18 2d9a_A B-MYB, MYB-related prot 61.9 35 0.0012 24.2 7.1 49 182-235 5-53 (60)
19 3sjm_A Telomeric repeat-bindin 61.6 28 0.00096 25.7 6.7 48 183-233 9-56 (64)
20 1gvd_A MYB proto-oncogene prot 51.2 42 0.0014 23.1 5.9 46 185-235 3-48 (52)
21 2cjj_A Radialis; plant develop 50.0 27 0.00091 28.0 5.2 47 187-236 10-57 (93)
22 2kes_A Synphilin-1; synphillin 49.8 14 0.00049 26.7 3.2 23 278-300 15-41 (48)
23 2li6_A SWI/SNF chromatin-remod 47.5 4.6 0.00016 33.0 0.4 45 190-237 49-97 (116)
24 1wgx_A KIAA1903 protein; MYB D 46.8 33 0.0011 26.6 5.1 47 187-236 10-57 (73)
25 2lm1_A Lysine-specific demethy 44.3 11 0.00037 30.0 2.1 45 190-235 44-94 (107)
26 1c20_A DEAD ringer protein; DN 39.7 14 0.00046 30.6 2.1 46 190-236 52-104 (128)
27 2cxy_A BAF250B subunit, HBAF25 39.1 14 0.00048 30.5 2.1 45 190-235 51-101 (125)
28 2aje_A Telomere repeat-binding 38.3 84 0.0029 25.7 6.6 54 179-235 7-62 (105)
29 2eqy_A RBP2 like, jumonji, at 37.9 16 0.00056 30.0 2.3 46 190-236 42-93 (122)
30 1kkx_A Transcription regulator 37.2 10 0.00035 31.5 1.0 45 190-237 48-96 (123)
31 2jrz_A Histone demethylase jar 36.0 16 0.00056 29.8 2.0 45 190-235 40-90 (117)
32 1w0t_A Telomeric repeat bindin 35.8 1.1E+02 0.0036 21.2 6.8 48 185-235 2-49 (53)
33 2jxj_A Histone demethylase jar 35.1 15 0.00053 28.5 1.7 45 190-235 36-86 (96)
34 4eef_G F-HB80.4, designed hema 30.2 11 0.00038 29.7 0.0 44 187-233 22-66 (74)
35 2kk0_A AT-rich interactive dom 29.1 29 0.00098 29.4 2.4 45 190-235 64-115 (145)
36 1ig6_A MRF-2, modulator recogn 28.2 13 0.00044 29.7 0.1 46 190-236 33-85 (107)
37 2da3_A Alpha-fetoprotein enhan 27.6 1.6E+02 0.0055 21.4 6.2 58 179-239 15-72 (80)
38 2din_A Cell division cycle 5-l 26.9 1.8E+02 0.006 20.9 6.8 49 182-237 6-54 (66)
39 1gv2_A C-MYB, MYB proto-oncoge 23.5 1.8E+02 0.0063 22.3 6.0 46 185-235 4-49 (105)
40 1qgp_A Protein (double strande 23.0 1.1E+02 0.0039 22.8 4.6 46 188-236 11-56 (77)
41 3b73_A PHIH1 repressor-like pr 22.5 1.6E+02 0.0054 23.8 5.6 51 185-239 7-57 (111)
42 2crg_A Metastasis associated p 22.3 86 0.003 23.4 3.7 46 182-232 5-50 (70)
43 2o1k_A NS28, non-structural gl 22.0 1.6E+02 0.0055 21.8 4.9 33 279-311 8-40 (52)
44 3ok8_A Brain-specific angiogen 21.6 2E+02 0.007 26.4 6.8 42 267-308 71-121 (222)
45 1gv2_A C-MYB, MYB proto-oncoge 21.5 2.5E+02 0.0085 21.5 6.4 45 185-235 56-100 (105)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=3.2e-29 Score=192.76 Aligned_cols=60 Identities=47% Similarity=0.776 Sum_probs=56.9
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhccC
Q 018583 180 ITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKY 240 (353)
Q Consensus 180 ~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~~~ 240 (353)
+++|+|++||+|||++||+||++|| .|+||||+||++|+|+|||++||||||||||+...
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 79999999999999999999999999999999753
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=93.07 E-value=0.29 Score=38.12 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=39.5
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhH
Q 018583 184 TRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR 236 (353)
Q Consensus 184 ~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYR 236 (353)
.+-.||+|=+.+|++||...|+ .=+.|-+.|+ +=|..+++.|-++|-
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 3678999999999999999993 3467777764 799999999999873
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=90.38 E-value=0.98 Score=33.86 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=41.1
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMA 238 (353)
Q Consensus 183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~ 238 (353)
..+-.||+|=++.|+++|..+|- .=+.|-+.| +|=|-.+|+.|.++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999983 446666654 789999999999988554
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.89 E-value=1.2 Score=33.38 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=41.1
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCCh---HHHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583 183 KTRIRWTQDLHEKFVECVNRLGGADKATP---KAILKLMDSEGLTIFHVKSHLQKYRMA 238 (353)
Q Consensus 183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtP---K~IL~lM~v~GLT~~hVkSHLQKYRl~ 238 (353)
..+=.||+|=+++|++||..+| .+...| +.|-+.| +|=|-.+|+.|-++|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 3455899999999999999998 333223 4455554 689999999999999764
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=83.09 E-value=1.8 Score=34.70 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=37.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHh---hh-C-----------C--CCccHHHHHHHHhhhHhcc
Q 018583 182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILK---LM-D-----------S--EGLTIFHVKSHLQKYRMAK 239 (353)
Q Consensus 182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~---lM-~-----------v--~GLT~~hVkSHLQKYRl~~ 239 (353)
.+..=.|.++|-..|++|++..--....+.+ |. .| | . .-=|+.+|.||||.-|..+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~--ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKII--LSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCC--HHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCcccee--ecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 3455689999999999999988522233322 21 11 1 1 3348889999999887654
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=81.91 E-value=6.1 Score=28.53 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=40.0
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHh
Q 018583 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 237 (353)
Q Consensus 183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl 237 (353)
..+-.||+|=.+++++||..+| . -.=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 4556799999999999999998 1 1246677776 68899999999988754
No 7
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=80.50 E-value=9.5 Score=29.29 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=40.5
Q ss_pred CCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhC-CCCccHHHHHHHHhhhHh
Q 018583 184 TRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMD-SEGLTIFHVKSHLQKYRM 237 (353)
Q Consensus 184 ~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~-v~GLT~~hVkSHLQKYRl 237 (353)
.+-.||.+=..+|++||..+| +-+|.+--++-. |||=|-.+|+.|-+.+.-
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 344699999999999999998 237876555443 689999999999887753
No 8
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=78.47 E-value=4.1 Score=41.55 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=44.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhccC
Q 018583 182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAKY 240 (353)
Q Consensus 182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~~~ 240 (353)
.+..-+||++=|..|++||.+.| + .=+.|-+.++- =|..+|++|-++||....
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGN--KSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCC--CCHHHHHHHHHHHHHHhC
Confidence 35578999999999999999998 3 47788888765 499999999999987543
No 9
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=78.42 E-value=3.9 Score=38.32 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=43.3
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583 182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMA 238 (353)
Q Consensus 182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~ 238 (353)
.+..-+||+|=++.|++|+...| + .=..|-++ |++=|..+|+.|..+||..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG---K-DW~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS---S-CHHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 36677999999999999999998 2 26778777 5789999999999999854
No 10
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.82 E-value=10 Score=27.62 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=37.2
Q ss_pred CCCCCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHH
Q 018583 177 GPVITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSH 231 (353)
Q Consensus 177 g~~~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSH 231 (353)
+....++..-.||++=|+.|++|+...| . .=..|-+. |+|=|..+|.-|
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHH
Confidence 3445567788999999999999999998 2 34666554 578888888654
No 11
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.82 E-value=4.8 Score=30.85 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=38.4
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChH---HHHhhhCCCCccHHHHHHHHhhhHhc
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPK---AILKLMDSEGLTIFHVKSHLQKYRMA 238 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK---~IL~lM~v~GLT~~hVkSHLQKYRl~ 238 (353)
+-.||.|=+++|+.|+..+++ -||. .|-+.| |=|-.+|+.|-+++.-.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 346999999999999999983 3564 466666 67999999998888655
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=72.36 E-value=18 Score=25.89 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=37.1
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHh
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 237 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl 237 (353)
+-.||+|=.+++++||.+.| . -.=+.|-+.|+. |=|-.+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~--~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-L--GNWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-T--TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999998 1 233566666642 6789999999887743
No 13
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=68.88 E-value=12 Score=30.17 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=32.7
Q ss_pred CHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018583 268 QIKEALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQQKAS 315 (353)
Q Consensus 268 qi~EALrlQmEVQrrLHEQLEVQR~LQLRIEAQGKYLQsmLekaqk~~ 315 (353)
.|.+.+..|-|-=+.--||+ +.||+-+.|||+-|+.||+.-+...
T Consensus 33 kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~~n 77 (85)
T 2ba2_A 33 VVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQGIN 77 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777765433333444 8899999999999999998776654
No 14
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.78 E-value=6.5 Score=29.01 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=33.0
Q ss_pred CCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHH
Q 018583 180 ITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSH 231 (353)
Q Consensus 180 ~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSH 231 (353)
.+...+-.||+|=|+.|.+|+...| -+ =..|-+.| |+.=|..+|..+
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH
Confidence 3445567999999999999999998 22 34554421 566777777543
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=62.93 E-value=23 Score=24.37 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=36.6
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY 235 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY 235 (353)
+-.||+|=.++++++|.+.|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 2346666665 688889998887766
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.90 E-value=30 Score=25.33 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=39.0
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583 182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY 235 (353)
Q Consensus 182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY 235 (353)
...|=.||+|=.++++++|.++|. ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 455668999999999999999981 23467777764 88999998887776
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=62.12 E-value=34 Score=25.05 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=43.2
Q ss_pred CCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHh
Q 018583 181 TNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 237 (353)
Q Consensus 181 ~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl 237 (353)
.++.|-.||+|=-+..+++|.++|. -.=+.|.+.|+..|=|-.+++-+-..|--
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 4678889999999999999999981 13477888886558899999888776643
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=61.91 E-value=35 Score=24.20 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583 182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY 235 (353)
Q Consensus 182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY 235 (353)
...|-.||+|=.++++++|.++|. -.=+.|-+.| +|=|-.+++.|-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 456778999999999999999982 1235566664 688888998887765
No 19
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=61.59 E-value=28 Score=25.67 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=37.3
Q ss_pred CCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHh
Q 018583 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQ 233 (353)
Q Consensus 183 K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQ 233 (353)
+.|-.||+|=-++.+++|.+.|. -.=+.|.+.+.+.|=|-.+++-+-.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHH
Confidence 45678999999999999999982 1356788888777888888875543
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=51.22 E-value=42 Score=23.07 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=35.2
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY 235 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY 235 (353)
+-.||+|=.++++++|.+.|. ..=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 447999999999999999982 1234565555 688888888887765
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=49.99 E-value=27 Score=27.99 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=36.6
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhhC-CCCccHHHHHHHHhhhH
Q 018583 187 RWTQDLHEKFVECVNRLGGADKATPKAILKLMD-SEGLTIFHVKSHLQKYR 236 (353)
Q Consensus 187 rWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~-v~GLT~~hVkSHLQKYR 236 (353)
.||.|=.+.|++|+..+| +-+|.+--++-. |||=|-.+|+.|-.++.
T Consensus 10 ~WT~eEd~~L~~al~~~~---~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD---KDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999997 225654333322 57999999999998875
No 22
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=49.76 E-value=14 Score=26.74 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=16.5
Q ss_pred HHhhhhHHH----HHHHHHHHHHHHHH
Q 018583 278 DVQRRLHEQ----LEIQRKLQLRIEEQ 300 (353)
Q Consensus 278 EVQrrLHEQ----LEVQR~LQLRIEAQ 300 (353)
.+=|+|+|| +-+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355677777 55788888877776
No 23
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.51 E-value=4.6 Score=33.00 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCccHHHHHHHHhhhHh
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGLTIFHVKSHLQKYRM 237 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT~~hVkSHLQKYRl 237 (353)
-||++.|.. |..+||.++.+- +.|.+.||++. -..|+.|-.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 478888875 789999987664 67889999987 5678887777643
No 24
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=46.80 E-value=33 Score=26.61 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=37.9
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhh-CCCCccHHHHHHHHhhhH
Q 018583 187 RWTQDLHEKFVECVNRLGGADKATPKAILKLM-DSEGLTIFHVKSHLQKYR 236 (353)
Q Consensus 187 rWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM-~v~GLT~~hVkSHLQKYR 236 (353)
.||.+=.++|.+|+..++ +.+|-+-.++- -|+|=|.++|+.|-....
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999986 45887665544 378999999998876653
No 25
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=44.31 E-value=11 Score=29.99 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCcc--HHHHHHHHhhh
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGLT--IFHVKSHLQKY 235 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVkSHLQKY 235 (353)
-+||+-|.. |..+||.++.+- +.|.+.||++.-| -..++.|=.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 479999876 778999987764 5788999987633 24566665555
No 26
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.74 E-value=14 Score=30.60 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCc-c--HHHHHHHHhhhH
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGL-T--IFHVKSHLQKYR 236 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GL-T--~~hVkSHLQKYR 236 (353)
-+||+.|.. |..+||.++.+- +.|.+.||++.- | ...++.|-.||=
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L 104 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYL 104 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 479998876 789999887664 578899998652 2 456777766663
No 27
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=39.13 E-value=14 Score=30.47 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCcc--HHHHHHHHhhh
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGLT--IFHVKSHLQKY 235 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVkSHLQKY 235 (353)
-+||+.|.. |..+||.++.+- +.|.+.||++.-| -..|+.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478988876 789999987654 5788999998643 23455555554
No 28
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=38.34 E-value=84 Score=25.68 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=41.0
Q ss_pred CCCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhC--CCCccHHHHHHHHhhh
Q 018583 179 VITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMD--SEGLTIFHVKSHLQKY 235 (353)
Q Consensus 179 ~~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~--v~GLT~~hVkSHLQKY 235 (353)
...++.|-.||+|=-+..+++|+++|. -.=+.|++.+. .+|=|-.++|-+...+
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 345788999999999999999999983 13457887663 4889999999754443
No 29
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.86 E-value=16 Score=30.02 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCcc--HHHHHHHHhhhH
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGLT--IFHVKSHLQKYR 236 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVkSHLQKYR 236 (353)
-+|++.|.. |..+||.++.+- +.|.+.||++.-+ ...++.|=.||=
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 478988876 889999887664 5788999986533 245666666653
No 30
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=37.20 E-value=10 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCccHHHHHHHHhhhHh
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGLTIFHVKSHLQKYRM 237 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT~~hVkSHLQKYRl 237 (353)
-||++.|.. |..+||.++.+- +.|.+.|+++. -..|+.|-.||=+
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 478888865 899999988776 57889999987 6778877666654
No 31
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.02 E-value=16 Score=29.78 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCcc--HHHHHHHHhhh
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGLT--IFHVKSHLQKY 235 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVkSHLQKY 235 (353)
-+|++.|.. |..+||.++.+- +.|.+.||++.-| ...|+.|=.||
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478988876 788999887664 5788999986433 34566666665
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=35.82 E-value=1.1e+02 Score=21.15 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=36.6
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY 235 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY 235 (353)
|-.||+|=.+..+++|...|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999981 134677788765577888887765554
No 33
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=35.15 E-value=15 Score=28.54 Aligned_cols=45 Identities=20% Similarity=0.053 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCcc--HHHHHHHHhhh
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGLT--IFHVKSHLQKY 235 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVkSHLQKY 235 (353)
-||++.|.. |..+||.++.+- +.|.+.|+++.-+ -..++.|=.||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 478888875 789999987664 5788999986533 23455555544
No 34
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=30.17 E-value=11 Score=29.72 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=35.6
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhhC-CCCccHHHHHHHHh
Q 018583 187 RWTQDLHEKFVECVNRLGGADKATPKAILKLMD-SEGLTIFHVKSHLQ 233 (353)
Q Consensus 187 rWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~-v~GLT~~hVkSHLQ 233 (353)
.||.+=.+.|..|+...+ +-||.+--++-. |||=|.+.|+.|-+
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 599999999999998885 567766555543 68999999998865
No 35
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.10 E-value=29 Score=29.44 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCc-c--HHHHHHHHhhh
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEGL-T--IFHVKSHLQKY 235 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GL-T--~~hVkSHLQKY 235 (353)
-+|++.|.. |..+||.++.+- +.|.+.||++.- | ...|+.|-.||
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~ 115 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 115 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence 478988876 789999987764 578899998762 1 35677766665
No 36
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=28.16 E-value=13 Score=29.70 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCC-cc--HHHHHHHHhhhH
Q 018583 190 QDLHEKFVECVNRLGGADKATP----KAILKLMDSEG-LT--IFHVKSHLQKYR 236 (353)
Q Consensus 190 ~eLH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~G-LT--~~hVkSHLQKYR 236 (353)
-+|+..|.. |..+||.++.+- +.|.+.||++. .| -..++.|=.||=
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 578988876 789999987765 57888999864 22 245777776663
No 37
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=27.61 E-value=1.6e+02 Score=21.42 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCCCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhcc
Q 018583 179 VITNKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239 (353)
Q Consensus 179 ~~~~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~~ 239 (353)
...++.|.++|++=. ..++++.... ...++..+.++...-|||..+|+-=.|.-|...
T Consensus 15 ~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 72 (80)
T 2da3_A 15 QRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARE 72 (80)
T ss_dssp CCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhH
Confidence 344667777788633 3344444443 356666677777777899999999888877653
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.90 E-value=1.8e+02 Score=20.87 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=38.4
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHh
Q 018583 182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 237 (353)
Q Consensus 182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl 237 (353)
...+-.||+|=.++++++|..+|. .=..|-+++ |=|-.+|+.|-..|--
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 345567999999999999999983 346666644 5889999999888754
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=23.49 E-value=1.8e+02 Score=22.30 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=35.8
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY 235 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY 235 (353)
+-.||+|=.++.+++|+..|. ..=+.|-+.| +|=|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999983 1235666665 688999998777665
No 40
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.05 E-value=1.1e+02 Score=22.77 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=36.2
Q ss_pred cChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhH
Q 018583 188 WTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYR 236 (353)
Q Consensus 188 WT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYR 236 (353)
=|+++..+-++++...|--+..|.+.|-+.+|| +...|..||-+-.
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~ 56 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 367888888999999984467899999999985 4667777776653
No 41
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=22.45 E-value=1.6e+02 Score=23.81 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=41.1
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhhHhcc
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRMAK 239 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKYRl~~ 239 (353)
+..|-...-++.++.+..-| .++|+.|-+.+++ |+|...|..||.+-.-.-
T Consensus 7 ~~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~G 57 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADHD 57 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHTT
T ss_pred hhhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHCC
Confidence 34688888899999888777 7999988886522 689999999999987653
No 42
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=22.30 E-value=86 Score=23.44 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=33.7
Q ss_pred CCCCcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHH
Q 018583 182 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHL 232 (353)
Q Consensus 182 ~K~RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHL 232 (353)
++..-.||++=|+.|.+|+...| -+ -..|-+.| |++-|..+|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 46667899999999999999998 22 45554411 6778887776554
No 43
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=22.02 E-value=1.6e+02 Score=21.82 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=28.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018583 279 VQRRLHEQLEIQRKLQLRIEEQGKHLQMLFDQQ 311 (353)
Q Consensus 279 VQrrLHEQLEVQR~LQLRIEAQGKYLQsmLeka 311 (353)
|=+.+.+|||+-.+|-.|==+|=+.|..|.+.-
T Consensus 8 ivkemrrQl~mIdkLTtREiEQVeLL~rIyd~L 40 (52)
T 2o1k_A 8 VVKEMRRQLEMIDKLTTREIEQVELLKRIYDKL 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678899999999999999999999998864
No 44
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=21.58 E-value=2e+02 Score=26.43 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=32.4
Q ss_pred cCHHHHHHhHHHHhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 018583 267 LQIKEALQLQLDVQRRLHEQLE---------IQRKLQLRIEEQGKHLQMLF 308 (353)
Q Consensus 267 ~qi~EALrlQmEVQrrLHEQLE---------VQR~LQLRIEAQGKYLQsmL 308 (353)
..|.+||.-=-|++|+|..+|| +-..|+.+||.-.||++..+
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~ 121 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSC 121 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777666678888888876 46789999999999998543
No 45
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=21.48 E-value=2.5e+02 Score=21.52 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=35.3
Q ss_pred CcccChHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCccHHHHHHHHhhh
Q 018583 185 RIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKY 235 (353)
Q Consensus 185 RlrWT~eLH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVkSHLQKY 235 (353)
+-.||+|=...++++|.++|. .=..|-+. +||=|-.+|+.|-..+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 457999999999999999983 23456554 5899999999886543
Done!