Query 018585
Match_columns 353
No_of_seqs 153 out of 1455
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 16.6 2.2E+02 0.0076 18.1 4.9 17 55-71 20-36 (44)
2 2ks1_B Epidermal growth factor 15.5 2.4E+02 0.0082 17.9 4.5 20 52-71 18-37 (44)
3 4g1u_A Hemin transport system 10.5 1.2E+02 0.0042 28.4 2.3 11 298-308 172-182 (357)
4 2lat_A Dolichyl-diphosphooligo 9.6 2.6E+02 0.0088 17.2 2.7 18 335-352 8-25 (37)
5 2zy9_A Mg2+ transporter MGTE; 9.5 2.9E+02 0.0098 26.6 4.7 23 50-72 416-438 (473)
6 2l9u_A Receptor tyrosine-prote 8.9 2.3E+02 0.0079 17.1 2.2 12 299-310 19-30 (40)
7 1vry_A Glycine receptor alpha- 7.3 3.6E+02 0.012 19.2 3.2 24 127-150 39-62 (76)
8 3j1r_A Archaeal adhesion filam 6.5 4.2E+02 0.014 14.8 3.0 15 296-310 9-23 (26)
9 1rkl_A Dolichyl-diphosphooligo 6.5 2.8E+02 0.0097 16.9 1.9 17 336-352 9-25 (36)
10 1vf5_F Protein PET M; photosyn 5.1 6.2E+02 0.021 15.2 3.6 23 262-284 7-29 (35)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=16.62 E-value=2.2e+02 Score=18.13 Aligned_cols=17 Identities=18% Similarity=0.634 Sum_probs=8.8
Q ss_pred HHHHHHHHhhHhhhhcc
Q 018585 55 ILITSMIGVCLPLFTRW 71 (353)
Q Consensus 55 i~~~sllg~~lP~~~~~ 71 (353)
+++..+++...=++.|+
T Consensus 20 v~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 55555555444455555
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.46 E-value=2.4e+02 Score=17.94 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhHhhhhcc
Q 018585 52 IVTILITSMIGVCLPLFTRW 71 (353)
Q Consensus 52 ~~ii~~~sllg~~lP~~~~~ 71 (353)
+..+++..+++...=++.|+
T Consensus 18 VgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444445554
No 3
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=10.47 E-value=1.2e+02 Score=28.38 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 018585 298 LLNASSAGLLI 308 (353)
Q Consensus 298 il~alaaGtfl 308 (353)
++.|++-+.++
T Consensus 172 iL~Giavs~~~ 182 (357)
T 4g1u_A 172 LLAGIAINALC 182 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 4
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=9.57 E-value=2.6e+02 Score=17.18 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 018585 335 SYAAVLLGAGGMSLMAKW 352 (353)
Q Consensus 335 ~~~~l~~G~~~Ma~l~~w 352 (353)
..++.++|.+.|.++-.|
T Consensus 8 ~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 8 AIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356788999999887543
No 5
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=9.49 E-value=2.9e+02 Score=26.57 Aligned_cols=23 Identities=17% Similarity=0.592 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhHhhhhccc
Q 018585 50 IAIVTILITSMIGVCLPLFTRWI 72 (353)
Q Consensus 50 ~~~~ii~~~sllg~~lP~~~~~~ 72 (353)
..++.+.+++++|+++|++.+|+
T Consensus 416 a~~~~~~~a~~~g~~~p~~~~~~ 438 (473)
T 2zy9_A 416 SLVLIVFFANLVGAMLPFLLRRL 438 (473)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444566777777777776664
No 6
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.86 E-value=2.3e+02 Score=17.11 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 018585 299 LNASSAGLLIYM 310 (353)
Q Consensus 299 l~alaaGtflYI 310 (353)
..-+-+|||+|-
T Consensus 19 if~~lg~tflyw 30 (40)
T 2l9u_A 19 IFMMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhCceeEEE
Confidence 445667889884
No 7
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=7.29 E-value=3.6e+02 Score=19.22 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 018585 127 FVAMLSAIATLMVDSLATSIYSKK 150 (353)
Q Consensus 127 ~~~~~Gf~l~~liE~~~~~~~~~~ 150 (353)
+..+..|.+.-++|..+-.+..++
T Consensus 39 ~~~C~~FVF~aLlEya~V~y~~r~ 62 (76)
T 1vry_A 39 LAVCLLFVFSALLEYAAVNFVSRK 62 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566778888889999887666554
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=6.51 E-value=4.2e+02 Score=14.81 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 018585 296 VGLLNASSAGLLIYM 310 (353)
Q Consensus 296 ~gil~alaaGtflYI 310 (353)
.-|+.+++++.++|.
T Consensus 9 lLIviav~aaVllyl 23 (26)
T 3j1r_A 9 LLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346778899999986
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=6.49 E-value=2.8e+02 Score=16.89 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 018585 336 YAAVLLGAGGMSLMAKW 352 (353)
Q Consensus 336 ~~~l~~G~~~Ma~l~~w 352 (353)
.++.++|...|.++-.|
T Consensus 9 ~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778999999887553
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.09 E-value=6.2e+02 Score=15.24 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 018585 262 VMVFFFSVTTPFGIALGIALSKT 284 (353)
Q Consensus 262 ~~~~ifsl~tPlGi~IG~~i~~~ 284 (353)
-...+....+++|.++|..+...
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhee
Confidence 34456667788999999888654
Done!