Query 018585
Match_columns 353
No_of_seqs 153 out of 1455
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 17:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018585.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018585hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 22.7 78 0.0057 24.4 6.1 28 47-74 115-142 (173)
2 d2bs2c1 f.21.2.1 (C:1-254) Fum 6.8 3.3E+02 0.024 21.7 5.6 65 79-143 23-96 (254)
3 d1q90d_ f.32.1.1 (D:) Subunit 4.2 6.7E+02 0.049 18.2 7.9 25 46-70 89-113 (156)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 3.6 3.8E+02 0.028 14.5 2.7 16 336-351 6-21 (34)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 3.5 3.6E+02 0.026 14.1 3.1 18 333-350 10-27 (32)
6 d1rkla_ f.23.30.1 (A:) Oligosa 2.9 4.4E+02 0.032 14.1 2.2 16 337-352 10-25 (36)
7 d1kqfb2 f.23.22.1 (B:246-290) 2.9 5.4E+02 0.039 14.8 3.1 16 297-312 19-34 (45)
8 d1v54d_ f.23.1.1 (D:) Mitochon 2.6 5.2E+02 0.038 18.8 3.1 24 289-312 73-96 (144)
9 d1jb0j_ f.23.18.1 (J:) Subunit 2.5 5.8E+02 0.042 14.3 3.0 18 292-309 11-28 (41)
10 d1q90m_ f.23.25.1 (M:) PetM su 2.1 5.7E+02 0.042 13.4 1.9 12 270-281 15-26 (34)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=22.66 E-value=78 Score=24.44 Aligned_cols=28 Identities=14% Similarity=0.514 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHhhHhhhhcccCC
Q 018585 47 LKIIAIVTILITSMIGVCLPLFTRWIPA 74 (353)
Q Consensus 47 lki~~~~ii~~~sllg~~lP~~~~~~~~ 74 (353)
.-+...+.+.+++++|..+|++.||.+.
T Consensus 115 i~~sl~~~~~ia~~~G~~lPlll~klg~ 142 (173)
T d2yvxa3 115 VGVSLVLIVFFANLVGAMLPFLLRRLGV 142 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344455667788888888988887643
No 2
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=6.76 E-value=3.3e+02 Score=21.73 Aligned_cols=65 Identities=6% Similarity=-0.161 Sum_probs=36.5
Q ss_pred chHHHHHHHhhhhHHHHhhhhhcc--------ccchhhhhccccC-CCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 018585 79 RNLFVVVKAFAAGIILATGFMHVL--------PDSFDMLTSSCLK-DNPWHKFPFSGFVAMLSAIATLMVDSLA 143 (353)
Q Consensus 79 ~~~l~~~~~fa~GV~L~~aflhLL--------Pea~e~~~~~~~~-~~~~~~yp~~~~~~~~Gf~l~~liE~~~ 143 (353)
+-.+..+.+++|=++..-.+.||+ ||+++...+-... ..+....|+...+..++++..+++.-..
T Consensus 23 ~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~~~ 96 (254)
T d2bs2c1 23 PAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFL 96 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 335667777776666667778887 5555554432111 1112345666666666666666665443
No 3
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.16 E-value=6.7e+02 Score=18.25 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHhhHhhhhc
Q 018585 46 PLKIIAIVTILITSMIGVCLPLFTR 70 (353)
Q Consensus 46 ~lki~~~~ii~~~sllg~~lP~~~~ 70 (353)
..|++.++++..+-+.-.++|++-+
T Consensus 89 P~kl~GVi~~~~~i~~L~~lP~l~~ 113 (156)
T d1q90d_ 89 PNKLLGVLLMAAVPAGLITVPFIES 113 (156)
T ss_dssp SCHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3466666666555555456677654
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.61 E-value=3.8e+02 Score=14.46 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 018585 336 YAAVLLGAGGMSLMAK 351 (353)
Q Consensus 336 ~~~l~~G~~~Ma~l~~ 351 (353)
+++.+.|.+++.++++
T Consensus 6 lv~tv~G~~vi~~vG~ 21 (34)
T d2axtj1 6 IVATVAGMGVIVIVGL 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheee
Confidence 4567788888888875
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.55 E-value=3.6e+02 Score=14.08 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018585 333 VKSYAAVLLGAGGMSLMA 350 (353)
Q Consensus 333 ~~~~~~l~~G~~~Ma~l~ 350 (353)
++.+..++.|+++-+++-
T Consensus 10 ~lsfglifvgwglgalll 27 (32)
T d2e74f1 10 LLSFGLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHh
Confidence 556777888888877664
No 6
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.89 E-value=4.4e+02 Score=14.11 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 018585 337 AAVLLGAGGMSLMAKW 352 (353)
Q Consensus 337 ~~l~~G~~~Ma~l~~w 352 (353)
+++.+|...|.++-+|
T Consensus 10 ~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 3567888888887654
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.86 E-value=5.4e+02 Score=14.84 Aligned_cols=16 Identities=13% Similarity=0.465 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 018585 297 GLLNASSAGLLIYMAL 312 (353)
Q Consensus 297 gil~alaaGtflYIa~ 312 (353)
++.-++++|.|=||+.
T Consensus 19 ~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 19 GFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhee
Confidence 4556778888888875
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.56 E-value=5.2e+02 Score=18.81 Aligned_cols=24 Identities=4% Similarity=-0.146 Sum_probs=12.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Q 018585 289 SPSSLITVGLLNASSAGLLIYMAL 312 (353)
Q Consensus 289 s~~~~~~~gil~alaaGtflYIa~ 312 (353)
+....++-+++.+++.|.++|+..
T Consensus 73 gewK~v~g~~~~~i~~s~~i~~~~ 96 (144)
T d1v54d_ 73 NEWKTVVGAAMFFIGFTALLLIWE 96 (144)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555566666665554
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=2.48 E-value=5.8e+02 Score=14.34 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 018585 292 SLITVGLLNASSAGLLIY 309 (353)
Q Consensus 292 ~~~~~gil~alaaGtflY 309 (353)
+.++..+-.++.||.++=
T Consensus 11 APVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 11 APVLAAIWMTITAGILIE 28 (41)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445666777888888753
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.05 E-value=5.7e+02 Score=13.40 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 018585 270 TTPFGIALGIAL 281 (353)
Q Consensus 270 ~tPlGi~IG~~i 281 (353)
+|-+|.++|..+
T Consensus 15 ~tl~glaigfvl 26 (34)
T d1q90m_ 15 MTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Done!