Your job contains 1 sequence.
>018587
MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD
FGNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLFDDEQ
KRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKL
VKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSPNPHNGS
SGSDKNNSEPERKSKQAPLPRKEALSSRPPQSASPAAPHSVQRPREQKESRESTFDADSR
LASARKRLQENYKREENAKRQRTIQVMDIHEIPKPKNAFFGKNKGGSSQGRHW
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018587
(353 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178173 - symbol:AT5G09850 species:3702 "Arabi... 947 3.3e-95 1
TAIR|locus:2156814 - symbol:AT5G05140 species:3702 "Arabi... 242 7.0e-31 2
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 162 3.0e-09 1
UNIPROTKB|E5RIS7 - symbol:TCEA1 "Transcription elongation... 112 5.2e-06 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 131 5.2e-06 1
UNIPROTKB|A5PKE4 - symbol:TCEANC2 "Transcription elongati... 125 7.3e-06 1
UNIPROTKB|F1MBR2 - symbol:TCEANC2 "Transcription elongati... 125 7.3e-06 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 129 9.4e-06 1
UNIPROTKB|Q5JRI8 - symbol:TCEA2 "Transcription elongation... 109 1.1e-05 1
UNIPROTKB|Q96MN5 - symbol:TCEANC2 "Transcription elongati... 123 1.3e-05 1
UNIPROTKB|Q5DR83 - symbol:TCEA3 "Rhabdomyosarcoma antigen... 105 1.6e-05 2
UNIPROTKB|E5RJ93 - symbol:TCEA1 "Transcription elongation... 106 2.3e-05 1
UNIPROTKB|I3LKH0 - symbol:TCEANC2 "Uncharacterized protei... 120 3.1e-05 1
FB|FBgn0039066 - symbol:EloA "Elongin A" species:7227 "Dr... 129 3.3e-05 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 123 4.3e-05 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 122 6.0e-05 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 121 7.2e-05 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 120 9.4e-05 1
UNIPROTKB|Q86VL0 - symbol:TCEA2 "TCEA2 protein" species:9... 117 0.00012 1
MGI|MGI:1913776 - symbol:Tceanc2 "transcription elongatio... 115 0.00012 1
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 119 0.00013 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 117 0.00020 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 117 0.00021 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 116 0.00027 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 117 0.00028 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 117 0.00028 1
UNIPROTKB|F1Q387 - symbol:TCEANC2 "Uncharacterized protei... 112 0.00029 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 115 0.00035 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 115 0.00035 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 115 0.00035 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 115 0.00035 1
ZFIN|ZDB-GENE-070705-486 - symbol:tceanc2 "transcription ... 111 0.00039 1
RGD|3827 - symbol:Tceb3 "transcription elongation factor ... 120 0.00042 1
UNIPROTKB|Q66HK4 - symbol:Tceb3 "Transcription elongation... 120 0.00042 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 113 0.00062 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 112 0.00063 1
UNIPROTKB|E2R638 - symbol:TCEA3 "Uncharacterized protein"... 103 0.00069 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 112 0.00077 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 110 0.00081 1
RGD|1359481 - symbol:Tceanc2 "transcription elongation fa... 108 0.00084 1
UNIPROTKB|Q5XIC7 - symbol:Tceanc2 "Transcription elongati... 108 0.00084 1
>TAIR|locus:2178173 [details] [associations]
symbol:AT5G09850 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005829
GO:GO:0005634 EMBL:CP002688 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AB016893 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AY058141 EMBL:AY093710 IPI:IPI00530321
RefSeq:NP_568218.1 UniGene:At.23236 ProteinModelPortal:F4KFC7
SMR:F4KFC7 PRIDE:F4KFC7 EnsemblPlants:AT5G09850.1 GeneID:830845
KEGG:ath:AT5G09850 TAIR:At5g09850 eggNOG:NOG237901
HOGENOM:HOG000243987 InParanoid:Q9FIC1 OMA:NIVERLY Uniprot:F4KFC7
Length = 353
Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
Identities = 201/363 (55%), Positives = 248/363 (68%)
Query: 1 MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
MDLDDFRS++ AGVDVWTFIDTAILVASLDY ELK RRD IVERLYAT +A++CRNCD
Sbjct: 1 MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD 60
Query: 61 FGNG--VVDVN-KEISRGQ-HDEVKAAQQASPSTPHSVNGXXXXXXXXXXXXXXPYGGLF 116
FG G V + ++ G+ H+E + + + P+ GLF
Sbjct: 61 FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPFAGLF 120
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
DDEQK I+EIKE LEDPD SE++L++LLQ+L DMDITF+AL+ETDIGRHVN++RKH SN+
Sbjct: 121 DDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNN 180
Query: 177 VRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMM-DGDSPQQKIPQNGNHQ-VPDFAYSP 234
VR+L K LV+KWK+ VDEWVK NQPG+L +++ D DSP QK NG+ Q VPDF YSP
Sbjct: 181 VRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYSP 240
Query: 235 NPHNGSSGSDKNNS--EPERKSKQ-APLPRKEXXXXXXXXXXXXXXXHSVQRPREQKESR 291
P NG S S KN++ EPERK + AP PR+E ++ PR+ KE +
Sbjct: 241 VPQNGYSSSSKNSNITEPERKPRPVAPQPRRESPSPAKPSRPSPSQ-QTI--PRD-KEHK 296
Query: 292 ESTFDADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKPKNAFFGKNKGGSSQG- 350
E FD +ARKRLQ+NY++ ENAK+QRTIQVMDIH+IPKPK F KGGSSQG
Sbjct: 297 EVDFD------TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKGGSSQGG 350
Query: 351 RHW 353
RHW
Sbjct: 351 RHW 353
>TAIR|locus:2156814 [details] [associations]
symbol:AT5G05140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009620 "response to fungus" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009753
"response to jasmonic acid stimulus" evidence=RCA] [GO:0010200
"response to chitin" evidence=RCA] InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 GO:GO:0005634 EMBL:CP002688 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 EMBL:AB018111
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AY062787 EMBL:AY081599
IPI:IPI00527750 RefSeq:NP_196133.3 UniGene:At.21997
ProteinModelPortal:Q9FHK9 SMR:Q9FHK9 PRIDE:Q9FHK9
EnsemblPlants:AT5G05140.1 GeneID:830396 KEGG:ath:AT5G05140
TAIR:At5g05140 eggNOG:NOG250858 HOGENOM:HOG000241439
InParanoid:Q9FHK9 OMA:FDEMDED PhylomeDB:Q9FHK9
ProtClustDB:CLSN2918616 Genevestigator:Q9FHK9 Uniprot:Q9FHK9
Length = 436
Score = 242 (90.2 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 79/258 (30%), Positives = 121/258 (46%)
Query: 3 LDDFRSILKTAG-VDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF 61
LD +R + G D++ ID AI+VA+ D + K RRDKI E L++ C +RC CD
Sbjct: 7 LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFS-CRVNRCVGCDH 65
Query: 62 GNGVVDVNKEISRGQ----------HDEVKAAQQASPSTPHSVNGXXXXXXXXXXXXXXP 111
V + E +RG ++ + A + S +S G
Sbjct: 66 LELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEAE 125
Query: 112 YGGLFDD-EQ-----KRILEIKEHL-EDPDQSEDALIDLLQSLADMDITFKALKETDIGR 164
L D+ E+ K + IKE L D+ L+D L+ L M + LK T+IG+
Sbjct: 126 --ALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGK 183
Query: 165 HVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQP--G-----ELASSAMMDGDSPQQ 217
VN LRKHSS+ +R+L K L+ +WK++VD+WV + G E A+ +++D +
Sbjct: 184 AVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAFP 243
Query: 218 KIPQNGNHQVPDFAYSPN 235
+P + V F PN
Sbjct: 244 SLP----YDVDIFTPEPN 257
Score = 123 (48.4 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 284 PREQKESRESTFDADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKPKNAFFGKN 343
P Q+E + DAD++ A+++LQE+Y+ ENAK+QRTIQV+++ IPK +A +
Sbjct: 365 PGPQQEKLKG-LDADAKFEFAKRKLQESYQHHENAKKQRTIQVLEM--IPKQGSAQKPQL 421
Query: 344 KGGSSQGRHW 353
K R+W
Sbjct: 422 KRPGMSNRNW 431
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 162 (62.1 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 55/192 (28%), Positives = 85/192 (44%)
Query: 138 DALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD--E 194
D +DLL+ L D ++T K L++T IG VN +RKH ++ DV L K L++ WK +++ +
Sbjct: 24 DGALDLLRELKDFNMTLKLLQDTRIGMSVNGIRKHCTDEDVVNLAKILIKNWKRLLESAQ 83
Query: 195 WVKLNQPGEL--ASSAMMDGDSPQQKIPQNGNHQ-VP-DFAYSP--NPHNGSSGSDKNNS 248
K +P E+ S SP + P+ + + P DF P N H S +
Sbjct: 84 NPKSERPNEVKNGSHPSKPSGSPSRTSPEKDSRKDAPVDFFPPPSINSHPPLRRSSVDVK 143
Query: 249 EPERKSKQAPLPRK---EXXXXXXXXXXXXXXXHSVQRPR-EQK-ESRESTFDADSRLAS 303
+ + PLPRK + H ++R E K E R+ST
Sbjct: 144 RKDSTDSKKPLPRKPSLDGRRDSKDSTDSKSSNHLLKRQSSEPKLERRDSTNSRSGSSPQ 203
Query: 304 ARKRLQENYKRE 315
A+K + K E
Sbjct: 204 AKKSCESKSKPE 215
>UNIPROTKB|E5RIS7 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00975678
ProteinModelPortal:E5RIS7 SMR:E5RIS7 PRIDE:E5RIS7
Ensembl:ENST00000520534 ArrayExpress:E5RIS7 Bgee:E5RIS7
Uniprot:E5RIS7
Length = 111
Score = 112 (44.5 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+DE R + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S+++
Sbjct: 2 EDEVVRFAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIVD 193
V L K L++ WK ++D
Sbjct: 61 EVTSLAKSLIKSWKKLLD 78
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 131 (51.2 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 39/112 (34%), Positives = 61/112 (54%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
D E +RI + + + ++ D IDLLQ L +M ++ + L+ T IG VN +RK SS++
Sbjct: 4 DQEVERIAKKLDKMVHK-KNTDGAIDLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDE 62
Query: 177 -VRKLVKHLVRKWKDIVD--EWVKLNQPGE--LASSAMMD--GDSPQQKIPQ 221
V+ L K L++ WK ++D E + GE L SS+ D G S P+
Sbjct: 63 EVQTLAKSLIKAWKKLLDGSEGKPEEKKGESPLQSSSSKDCPGSSDTSNKPE 114
>UNIPROTKB|A5PKE4 [details] [associations]
symbol:TCEANC2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003618 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:BC142457 IPI:IPI00868616 RefSeq:NP_001098462.1
UniGene:Bt.35742 ProteinModelPortal:A5PKE4 GeneID:539385
KEGG:bta:539385 CTD:127428 eggNOG:NOG309610 HOGENOM:HOG000008018
HOVERGEN:HBG058410 InParanoid:A5PKE4 OrthoDB:EOG44QT23
NextBio:20877958 Uniprot:A5PKE4
Length = 208
Score = 125 (49.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQS++ L++ L+ L + + LK T IG VN++R+HS ++V L + +
Sbjct: 46 KTMLELPDQSKENLVEALRELKKKIPSREVLKSTKIGHTVNKMRQHSDSEVACLAREVYT 105
Query: 187 KWKDIVDEWVKLNQPG-ELASSA 208
+W+ +++ V N+P E+ S A
Sbjct: 106 EWRTFIEKHV--NRPSIEVRSDA 126
>UNIPROTKB|F1MBR2 [details] [associations]
symbol:TCEANC2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:9913
"Bos taurus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003618 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 IPI:IPI00868616 UniGene:Bt.35742
GeneTree:ENSGT00390000014384 OMA:REVYTEW EMBL:DAAA02008837
Ensembl:ENSBTAT00000012535 Uniprot:F1MBR2
Length = 208
Score = 125 (49.1 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQS++ L++ L+ L + + LK T IG VN++R+HS ++V L + +
Sbjct: 46 KTMLELPDQSKENLVEALRELKKKIPSREVLKSTKIGHTVNKMRQHSDSEVACLAREVYT 105
Query: 187 KWKDIVDEWVKLNQPG-ELASSA 208
+W+ +++ V N+P E+ S A
Sbjct: 106 EWRTFIEKHV--NRPSIEVRSDA 126
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 129 (50.5 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 119 EQKRILEIKEHLEDPDQSEDAL--IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
E++ I+ I + ++ Q ++ + +DLL+ L ++ +T + L+ T IG VN +RK S++D
Sbjct: 5 EEEEIIRIAKKMDKMAQKKNGVGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDD 64
Query: 177 -VRKLVKHLVRKWKDIVDE 194
V L K L++ WK ++DE
Sbjct: 65 EVTSLAKSLIKSWKKLLDE 83
>UNIPROTKB|Q5JRI8 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR017923 Pfam:PF08711 PROSITE:PS51319 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003746 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL590548 EMBL:AL355803 UniGene:Hs.505004
UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00384330 SMR:Q5JRI8
STRING:Q5JRI8 Ensembl:ENST00000415602 UCSC:uc010gku.2
Uniprot:Q5JRI8
Length = 82
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 141 IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND-VRKLVKHLVRKWKDIVD 193
+DLL+ L M IT L+ T +G VN LRK SS++ V L K L++ WK ++D
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD 54
>UNIPROTKB|Q96MN5 [details] [associations]
symbol:TCEANC2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL353898 CTD:127428 eggNOG:NOG309610
HOVERGEN:HBG058410 OrthoDB:EOG44QT23 EMBL:AK056674 EMBL:AK096488
EMBL:BC035374 IPI:IPI00645722 IPI:IPI00845424 RefSeq:NP_694580.1
UniGene:Hs.558618 HSSP:P23881 ProteinModelPortal:Q96MN5 SMR:Q96MN5
PhosphoSite:Q96MN5 DMDM:74752040 PaxDb:Q96MN5 PRIDE:Q96MN5
DNASU:127428 Ensembl:ENST00000234827 Ensembl:ENST00000371331
GeneID:127428 KEGG:hsa:127428 UCSC:uc001cwt.1 GeneCards:GC01P054520
HGNC:HGNC:26494 HPA:HPA046918 neXtProt:NX_Q96MN5
PharmGKB:PA142672531 InParanoid:Q96MN5 PhylomeDB:Q96MN5
GenomeRNAi:127428 NextBio:82091 Bgee:Q96MN5 CleanEx:HS_C1orf83
Genevestigator:Q96MN5 Uniprot:Q96MN5
Length = 208
Score = 123 (48.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ+++ L++ LQ L + + LK T IG VN++RKHS ++V L + +
Sbjct: 46 KTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYT 105
Query: 187 KWKDIVDE 194
+WK ++
Sbjct: 106 EWKTFTEK 113
>UNIPROTKB|Q5DR83 [details] [associations]
symbol:TCEA3 "Rhabdomyosarcoma antigen MU-RMS-40.22"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AL357134 Gene3D:1.20.930.10
SUPFAM:SSF47676 EMBL:AL109936 UniGene:Hs.446354 HGNC:HGNC:11615
ChiTaRS:TCEA3 EMBL:AY540752 IPI:IPI01012612
ProteinModelPortal:Q5DR83 SMR:Q5DR83 STRING:Q5DR83
Ensembl:ENST00000374601 UCSC:uc010ody.1 ArrayExpress:Q5DR83
Bgee:Q5DR83 Uniprot:Q5DR83
Length = 154
Score = 105 (42.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 119 EQKRILEIKEHLED--PDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
+++ +L I + LE ++ + +DLL+ L ++ + L+ T IG VN +RKH S+
Sbjct: 3 QEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
Query: 176 DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 63 EVVSLAKVLIKNWKRLLD 80
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 282 QRPREQKESRESTFDADSRLASARKR 307
++ RE ++R + D+ S +S+ KR
Sbjct: 118 RKKREDPKTRRDSVDSKSSASSSPKR 143
>UNIPROTKB|E5RJ93 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
EMBL:AC100821 HGNC:HGNC:11612 IPI:IPI00974396
ProteinModelPortal:E5RJ93 SMR:E5RJ93 Ensembl:ENST00000518784
ArrayExpress:E5RJ93 Bgee:E5RJ93 Uniprot:E5RJ93
Length = 90
Score = 106 (42.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+DE R + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S+++
Sbjct: 2 EDEVVRFAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIV 192
V L K L++ WK ++
Sbjct: 61 EVTSLAKSLIKSWKKLL 77
>UNIPROTKB|I3LKH0 [details] [associations]
symbol:TCEANC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 GeneTree:ENSGT00390000014384 OMA:REVYTEW
EMBL:FP475975 RefSeq:XP_003356504.1 Ensembl:ENSSSCT00000029087
GeneID:100621219 KEGG:ssc:100621219 Uniprot:I3LKH0
Length = 208
Score = 120 (47.3 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ+++ L+++L+ L + + LK T IG VN++R+HS ++V L + +
Sbjct: 46 KTMLELPDQTKENLVEVLRELKKKIPSREVLKSTRIGHTVNKMRQHSDSEVACLAREVYT 105
Query: 187 KWKDIVDEWV 196
+W+ ++E V
Sbjct: 106 EWRTFIEEHV 115
>FB|FBgn0039066 [details] [associations]
symbol:EloA "Elongin A" species:7227 "Drosophila
melanogaster" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA]
[GO:0070449 "elongin complex" evidence=ISS] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0008023
"transcription elongation factor complex" evidence=ISS] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881
Pfam:PF08711 PROSITE:PS51319 EMBL:AE014297 GO:GO:0016021
GO:GO:0007275 GO:GO:0003677 GO:GO:0006368 GO:GO:0032968 KO:K15076
Gene3D:1.20.930.10 SUPFAM:SSF47676 eggNOG:NOG114994
GeneTree:ENSGT00390000002428 EMBL:AY061363 EMBL:BT003775
RefSeq:NP_651135.1 RefSeq:NP_732846.1 UniGene:Dm.1292
ProteinModelPortal:Q9VCP0 SMR:Q9VCP0 IntAct:Q9VCP0 MINT:MINT-812632
STRING:Q9VCP0 PaxDb:Q9VCP0 PRIDE:Q9VCP0 EnsemblMetazoa:FBtr0084374
GeneID:42749 KEGG:dme:Dmel_CG6755 CTD:42749 FlyBase:FBgn0039066
InParanoid:Q9VCP0 OMA:WKVHCHR OrthoDB:EOG4VQ84K PhylomeDB:Q9VCP0
GenomeRNAi:42749 NextBio:830369 Bgee:Q9VCP0 GermOnline:CG6755
GO:GO:0070449 Uniprot:Q9VCP0
Length = 643
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 50/204 (24%), Positives = 85/204 (41%)
Query: 123 ILEIKEH----LEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVR 178
+L++ H +E + E L+ + L ++ I F+ L+ET IG+ VN LRK S +V
Sbjct: 7 LLDVVRHYQRSIEKHGEDEQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRK-ISGEVG 65
Query: 179 KLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSPNPHN 238
K LV KWK +V + P ++ + + K + + PD N
Sbjct: 66 VAAKTLVTKWKAMVAK----EDPSIASTPTAIHNEEDSGKT--KSSDEDPD--QENKGGN 117
Query: 239 GSSGSDKNNSEPERKSKQAPLPRKEXXXXXXXXXXXXXXXHSVQRPREQKESRESTFDAD 298
SSG D N S+ KSK A + E + +S++ D +
Sbjct: 118 SSSGEDLNTSK--HKSKHAKSTKHERSSSSRSHSKSRSDSDKKHKSSRHDKSKDRDKDRE 175
Query: 299 SRL-ASARKRLQEN--YKREENAK 319
+ A K + N +K ++++K
Sbjct: 176 GQKEAKEHKEKKSNGEHKSKDSSK 199
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 32/111 (28%), Positives = 58/111 (52%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
DDE RI + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S+++
Sbjct: 2 DDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIVD-EWVKLNQPGELASSAMMDGDSPQQKIPQNGNH 225
V L K L++ WK ++D + + +A+ +SP+ + + H
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKDTAITSQNSPEAREESSSGH 111
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 122 (48.0 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 120 QKRILEIKEHLED--PDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND- 176
++ I+ I + L+ +S D +DLL+ L M +T L+ T IG VN LRK SS++
Sbjct: 30 EEEIVRIAKRLDKMVAKKSADGAMDLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEE 89
Query: 177 VRKLVKHLVRKWKDIVD 193
V L K L++ WK ++D
Sbjct: 90 VIALAKSLIKSWKKLLD 106
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 121 (47.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN LRK S+++
Sbjct: 2 EDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIVDEWVKLNQPGELASS-AMMDGDSPQQKIPQNGNHQV 227
V L K L++ WK ++D P E A+ +SP+ + + + V
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKEPAISSQNSPEAREESSSSSNV 113
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.4e-05
Identities = 34/112 (30%), Positives = 60/112 (53%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S+++
Sbjct: 2 EDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIVDEWVKLNQPGELAS-SAMMDGDSPQ--QKIPQNGN 224
V L K L++ WK ++D P E +A+ +SP+ ++ +GN
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPSTDKDPEEKKKDTAITSQNSPEAREESSSSGN 112
>UNIPROTKB|Q86VL0 [details] [associations]
symbol:TCEA2 "TCEA2 protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS51319 SMART:SM00509 GO:GO:0005634 GO:GO:0005813
EMBL:CH471077 GO:GO:0003677 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803 KO:K03145
CTD:6919 RefSeq:NP_003186.1 UniGene:Hs.505004 UniGene:Hs.736326
DNASU:6919 GeneID:6919 KEGG:hsa:6919 HGNC:HGNC:11614
GenomeRNAi:6919 NextBio:27067 IPI:IPI00384330 EMBL:BC050623
SMR:Q86VL0 MINT:MINT-1379539 STRING:Q86VL0 Ensembl:ENST00000395053
Uniprot:Q86VL0
Length = 242
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 34/120 (28%), Positives = 56/120 (46%)
Query: 119 EQKRILEIKEHLED--PDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+++ I I L+ +S + +DLL+ L M IT L+ T +G VN LRK SS++
Sbjct: 4 KEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDE 63
Query: 177 -VRKLVKHLVRKWKDIVDEW-VKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSP 234
V L K L++ WK ++D K + G D+ + P ++P +P
Sbjct: 64 EVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTP 123
>MGI|MGI:1913776 [details] [associations]
symbol:Tceanc2 "transcription elongation factor A (SII)
N-terminal and central domain containing 2" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR003618
InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711 PROSITE:PS51319
PROSITE:PS51321 MGI:MGI:1913776 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10 SUPFAM:SSF47676
eggNOG:NOG309610 HOVERGEN:HBG058410 OrthoDB:EOG44QT23
GeneTree:ENSGT00390000014384 OMA:REVYTEW HSSP:P23881 EMBL:AK008715
EMBL:AK011991 EMBL:BC028321 IPI:IPI00655212 RefSeq:NP_079893.1
UniGene:Mm.246956 ProteinModelPortal:Q8R2M0 SMR:Q8R2M0
PhosphoSite:Q8R2M0 PRIDE:Q8R2M0 DNASU:66526
Ensembl:ENSMUST00000030362 Ensembl:ENSMUST00000057043
Ensembl:ENSMUST00000058585 GeneID:66526 KEGG:mmu:66526
UCSC:uc008tzh.1 CTD:66526 NextBio:321940 Bgee:Q8R2M0
CleanEx:MM_2210012G02RIK Genevestigator:Q8R2M0 Uniprot:Q8R2M0
Length = 207
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ+++ L+ LQ L + + L+ T IG VN++R+HS +V L K +
Sbjct: 45 KTMLELPDQTKENLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHSDPEVAGLAKEVYT 104
Query: 187 KWKDIVDEWVKLNQP 201
+WK +++ L++P
Sbjct: 105 EWKTFIEK--HLDRP 117
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 119 (46.9 bits), Expect = 0.00013, P = 0.00013
Identities = 39/141 (27%), Positives = 62/141 (43%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
++E RI + + +D +DLL++L ++I L +T IG VN+LRK S +D
Sbjct: 4 EEEVFRIQKKMSKMASDGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDD 63
Query: 177 -VRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSPN 235
V L K L++ WK LAS A ++ K + N +
Sbjct: 64 EVIALAKTLIKNWKRF------------LASPAPTTPNNSSAKEGSSNNSSASKSTSAAK 111
Query: 236 PHNGSSGSDKNNSEPERKSKQ 256
+ SG DK++S K K+
Sbjct: 112 SSSSISGKDKSSSSSSSKDKE 132
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 34/120 (28%), Positives = 56/120 (46%)
Query: 119 EQKRILEIKEHLED--PDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+++ I I L+ +S + +DLL+ L M IT L+ T +G VN LRK SS++
Sbjct: 4 KEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDE 63
Query: 177 -VRKLVKHLVRKWKDIVDEW-VKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSP 234
V L K L++ WK ++D K + G D+ + P ++P +P
Sbjct: 64 EVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTP 123
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 35/123 (28%), Positives = 59/123 (47%)
Query: 119 EQKRILEIKEHLED--PDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+++ I I L+ +S + +DLL+ L M +T L+ T +G VN LRK SS++
Sbjct: 4 KEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDE 63
Query: 177 -VRKLVKHLVRKWKDIVDEW-VKLNQP---GELASSAMMDGDSPQQKIPQNGNHQVPDFA 231
V L K L++ WK ++D K + G L +S+ + Q P ++P
Sbjct: 64 EVVTLAKSLIKSWKKLLDASDAKARERRRGGSLPTSSSKEASEAQD--PSRKRPELPRMP 121
Query: 232 YSP 234
+P
Sbjct: 122 STP 124
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 116 (45.9 bits), Expect = 0.00027, P = 0.00027
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S+++
Sbjct: 2 EDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIVD 193
V L K L++ WK ++D
Sbjct: 61 EVTSLAKSLIKSWKKLLD 78
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI + E + ++E AL DLL+ L ++ + L+ T IG VN +RKH SN
Sbjct: 4 EEELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNK 62
Query: 176 DVRKLVKHLVRKWKDIVD 193
+V L K L+R WK ++D
Sbjct: 63 EVVALAKVLIRNWKQLLD 80
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI + E + ++E AL DLL+ L ++ + L+ T IG VN +RKH SN
Sbjct: 4 EEELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNK 62
Query: 176 DVRKLVKHLVRKWKDIVD 193
+V L K L+R WK ++D
Sbjct: 63 EVVALAKVLIRNWKQLLD 80
>UNIPROTKB|F1Q387 [details] [associations]
symbol:TCEANC2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003618 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 CTD:127428 GeneTree:ENSGT00390000014384 OMA:REVYTEW
EMBL:AAEX03003822 RefSeq:XP_853240.1 ProteinModelPortal:F1Q387
Ensembl:ENSCAFT00000030263 GeneID:610613 KEGG:cfa:610613
Uniprot:F1Q387
Length = 208
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ++ L++ LQ L + + LK T IG VN++R+HS +V L + +
Sbjct: 46 KTMLELPDQTKQNLVEALQELKKKIPSREVLKSTRIGHTVNKMRQHSDPEVACLAREVYT 105
Query: 187 KWKDIVDEWVKLNQP 201
+W+ +++ L++P
Sbjct: 106 EWRTFIEK--HLDRP 118
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
++E RI + + +E A+ DLL+ L +M IT L+ T +G VN LRK SS++
Sbjct: 4 EEEIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE 62
Query: 177 -VRKLVKHLVRKWKDIVD 193
+ L K L++ WK ++D
Sbjct: 63 ELIALAKSLIKSWKKLLD 80
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
++E RI + + +E A+ DLL+ L +M IT L+ T +G VN LRK SS++
Sbjct: 4 EEEIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE 62
Query: 177 -VRKLVKHLVRKWKDIVD 193
+ L K L++ WK ++D
Sbjct: 63 ELIALAKSLIKSWKKLLD 80
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
++E RI + + +E A+ DLL+ L +M IT L+ T +G VN LRK SS++
Sbjct: 4 EEEIARIARRLDKMVTRKNAEGAM-DLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDE 62
Query: 177 -VRKLVKHLVRKWKDIVD 193
+ L K L++ WK ++D
Sbjct: 63 ELIALAKSLIKSWKKLLD 80
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S+++
Sbjct: 2 EDEVIRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIVD 193
V L K L++ WK ++D
Sbjct: 61 EVTSLAKSLIKSWKKLLD 78
>ZFIN|ZDB-GENE-070705-486 [details] [associations]
symbol:tceanc2 "transcription elongation factor A
(SII) N-terminal and central domain containing 2" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 PROSITE:PS51321 ZFIN:ZDB-GENE-070705-486
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:CR450845 CTD:127428
eggNOG:NOG309610 HOGENOM:HOG000008018 HOVERGEN:HBG058410
OrthoDB:EOG44QT23 IPI:IPI00805701 RefSeq:XP_696087.1
UniGene:Dr.86550 ProteinModelPortal:B0UYI1
Ensembl:ENSDART00000091497 GeneID:567698 KEGG:dre:567698
GeneTree:ENSGT00390000014384 OMA:REVYTEW NextBio:20888801
Bgee:B0UYI1 Uniprot:B0UYI1
Length = 210
Score = 111 (44.1 bits), Expect = 0.00039, P = 0.00039
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLV 185
K LE P Q ++ +I+ L+ L + + LK T IG VN LRKHS + +++ L K +
Sbjct: 45 KSILELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVY 104
Query: 186 RKWKDIVDEWVKLNQP 201
+ W+ ++E N+P
Sbjct: 105 KHWRTFIEEHA--NKP 118
>RGD|3827 [details] [associations]
symbol:Tceb3 "transcription elongation factor B (SIII), polypeptide
3" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding" evidence=TAS]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0008023 "transcription elongation factor
complex" evidence=IDA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 RGD:3827 GO:GO:0016021
GO:GO:0006357 GO:GO:0003690 GO:GO:0006368 GO:GO:0008023
HOGENOM:HOG000059565 HOVERGEN:HBG051467 Gene3D:1.20.930.10
SUPFAM:SSF47676 eggNOG:NOG114994 OrthoDB:EOG495ZRB EMBL:L46816
IPI:IPI00326357 PIR:A57244 UniGene:Rn.37427 ProteinModelPortal:Q63187
STRING:Q63187 PhosphoSite:Q63187 PRIDE:Q63187 UCSC:RGD:3827
InParanoid:Q63187 ArrayExpress:Q63187 Genevestigator:Q63187
GermOnline:ENSRNOG00000010902 Uniprot:Q63187
Length = 773
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 39/125 (31%), Positives = 58/125 (46%)
Query: 132 DPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDI 191
+PD + L+ L+ L+ + IT L ET +G+ VN RKH V + LV +WK +
Sbjct: 20 NPDPKK--LLKYLKKLSVLPITVDILVETGVGKTVNSFRKHEQ--VGNFARDLVAQWKKL 75
Query: 192 VDEWVKLN-----QPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSPNPHNGSSGSDKN 246
V V+ N Q E ++S D PQQ+ GN+Q A P++ K+
Sbjct: 76 VP--VERNNEAEDQDFEKSNSRKRPRDVPQQEEEAEGNYQESWQASGSQPYSPEHRQKKH 133
Query: 247 NSEPE 251
PE
Sbjct: 134 RKLPE 138
>UNIPROTKB|Q66HK4 [details] [associations]
symbol:Tceb3 "Transcription elongation factor B polypeptide
3" species:10116 "Rattus norvegicus" [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR001810 InterPro:IPR003617
InterPro:IPR010684 InterPro:IPR017923 Pfam:PF06881 Pfam:PF08711
PROSITE:PS50181 PROSITE:PS51319 SMART:SM00509 RGD:3827
GO:GO:0016021 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003746 EMBL:CH473968 HOVERGEN:HBG051467
KO:K15076 Gene3D:1.20.930.10 SUPFAM:SSF47676
GeneTree:ENSGT00390000002428 CTD:6924 UniGene:Rn.37427
EMBL:BC081815 IPI:IPI00851142 RefSeq:NP_058799.2 STRING:Q66HK4
Ensembl:ENSRNOT00000064596 GeneID:25562 KEGG:rno:25562
InParanoid:Q66HK4 NextBio:607153 Genevestigator:Q66HK4
Uniprot:Q66HK4
Length = 773
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 39/125 (31%), Positives = 58/125 (46%)
Query: 132 DPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDI 191
+PD + L+ L+ L+ + IT L ET +G+ VN RKH V + LV +WK +
Sbjct: 20 NPDPKK--LLKYLKKLSVLPITVDILVETGVGKTVNSFRKHEQ--VGNFARDLVAQWKKL 75
Query: 192 VDEWVKLN-----QPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSPNPHNGSSGSDKN 246
V V+ N Q E ++S D PQQ+ GN+Q A P++ K+
Sbjct: 76 VP--VERNNEAEDQDFEKSNSRKRPRDVPQQEEEAEGNYQESWQASGSQPYSPEHRQKKH 133
Query: 247 NSEPE 251
PE
Sbjct: 134 RKLPE 138
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 113 (44.8 bits), Expect = 0.00062, P = 0.00062
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 119 EQKRILEIKEHLEDPDQSEDALIDLLQSLADMDI--TFKALKETDIGRHVNQLRKHSSND 176
+ K +L ++LE ++ A++++L L D + T K L+ET +G VN+ +K ++ +
Sbjct: 2 DSKEVLVHVKNLEKNKSNDAAVLEILHVL-DKEFVPTEKLLRETKVGVEVNKFKKSTNVE 60
Query: 177 VRKLVKHLVRKWKDIVDE 194
+ KLVK ++ WKD +++
Sbjct: 61 ISKLVKKMISSWKDAINK 78
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 112 (44.5 bits), Expect = 0.00063, P = 0.00063
Identities = 29/100 (29%), Positives = 48/100 (48%)
Query: 138 DALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND-VRKLVKHLVRKWKDIVDEW- 195
+ +DLL+ L M +T L+ T +G VN LRK SS++ V L K L++ WK ++D
Sbjct: 1 EGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASD 60
Query: 196 VKLNQPGELASSAMMDG-DSPQQKIPQNGNHQVPDFAYSP 234
K + ++P+ K P ++P +P
Sbjct: 61 AKAREQRRAGPPPTSSSKEAPEAKDPSRKRPELPRVPSAP 100
>UNIPROTKB|E2R638 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003617 InterPro:IPR017923
Pfam:PF08711 PROSITE:PS51319 SMART:SM00509 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.20.930.10 SUPFAM:SSF47676
Ensembl:ENSCAFT00000003983 Uniprot:E2R638
Length = 154
Score = 103 (41.3 bits), Expect = 0.00069, P = 0.00069
Identities = 44/147 (29%), Positives = 67/147 (45%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI E + SE AL LL+ L ++ + L+ T IG VN +RKH S+
Sbjct: 4 EEELLRIARKLEKMVARKNSEGAL-GLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
Query: 176 DVRKLVKHLVRKWKDIVDE-WVKLNQPGELASSAMMD-G-DSPQQKIPQNG-NHQVPDFA 231
+V L K L++ WK ++D + GE A + G D K P+ G + A
Sbjct: 63 EVVSLAKVLIKNWKRLLDSPGPPKGEKGEERDKAKKEKGLDCSNWK-PETGLSPPRKKRA 121
Query: 232 YSPNPHNGSSGSDKN-NSEPERKSKQA 257
P S S + S P+R S ++
Sbjct: 122 EEPKERRDSVDSKSSATSSPKRPSMES 148
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 112 (44.5 bits), Expect = 0.00077, P = 0.00077
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
+DE R + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S+++
Sbjct: 2 EDEVVRFAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 177 -VRKLVKHLVRKWKDIVD 193
V L K L++ WK ++D
Sbjct: 61 EVTSLAKSLIKSWKKLLD 78
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00081
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 141 IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND-VRKLVKHLVRKWKDIVDEW-VKL 198
+DLL+ L M IT L+ T +G VN LRK SS++ V L K L++ WK ++D K
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDASDAKA 60
Query: 199 NQPGELASSAMMDGDSPQQKIPQNGNHQVPDFAYSP 234
+ G D+ + P ++P +P
Sbjct: 61 RERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTP 96
>RGD|1359481 [details] [associations]
symbol:Tceanc2 "transcription elongation factor A (SII)
N-terminal and central domain containing 2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
Pfam:PF08711 PROSITE:PS51319 PROSITE:PS51321 RGD:1359481
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30
Gene3D:1.20.930.10 SUPFAM:SSF47676 CTD:127428 eggNOG:NOG309610
HOVERGEN:HBG058410 OrthoDB:EOG44QT23 HSSP:P23881 EMBL:BC083757
IPI:IPI00369078 RefSeq:NP_001014282.1 UniGene:Rn.17312
ProteinModelPortal:Q5XIC7 PRIDE:Q5XIC7 DNASU:366431 GeneID:366431
KEGG:rno:366431 UCSC:RGD:1359481 NextBio:689384 ArrayExpress:Q5XIC7
Genevestigator:Q5XIC7 Uniprot:Q5XIC7
Length = 207
Score = 108 (43.1 bits), Expect = 0.00084, P = 0.00084
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE P+Q+++ L+ LQ L + + L+ T IG VN++R+HS +V L K +
Sbjct: 45 KTVLELPEQTKENLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHSDPEVAGLAKEVYT 104
Query: 187 KWKDIVDEWVKLNQP 201
+WK ++ L++P
Sbjct: 105 EWKTFIEN--HLDRP 117
>UNIPROTKB|Q5XIC7 [details] [associations]
symbol:Tceanc2 "Transcription elongation factor A
N-terminal and central domain-containing protein 2" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500 Pfam:PF08711
PROSITE:PS51319 PROSITE:PS51321 RGD:1359481 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 Gene3D:1.20.930.10
SUPFAM:SSF47676 CTD:127428 eggNOG:NOG309610 HOVERGEN:HBG058410
OrthoDB:EOG44QT23 HSSP:P23881 EMBL:BC083757 IPI:IPI00369078
RefSeq:NP_001014282.1 UniGene:Rn.17312 ProteinModelPortal:Q5XIC7
PRIDE:Q5XIC7 DNASU:366431 GeneID:366431 KEGG:rno:366431
UCSC:RGD:1359481 NextBio:689384 ArrayExpress:Q5XIC7
Genevestigator:Q5XIC7 Uniprot:Q5XIC7
Length = 207
Score = 108 (43.1 bits), Expect = 0.00084, P = 0.00084
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE P+Q+++ L+ LQ L + + L+ T IG VN++R+HS +V L K +
Sbjct: 45 KTVLELPEQTKENLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHSDPEVAGLAKEVYT 104
Query: 187 KWKDIVDEWVKLNQP 201
+WK ++ L++P
Sbjct: 105 EWKTFIEN--HLDRP 117
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.130 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 353 324 0.00086 116 3 11 23 0.46 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 605 (64 KB)
Total size of DFA: 229 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.56u 0.12s 34.68t Elapsed: 00:00:02
Total cpu time: 34.56u 0.12s 34.68t Elapsed: 00:00:02
Start: Thu May 9 13:48:47 2013 End: Thu May 9 13:48:49 2013