BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018587
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/366 (57%), Positives = 260/366 (71%), Gaps = 26/366 (7%)
Query: 1 MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
MDLDDFRS++ AGVDVWTFIDTAILVASLDY ELK RRD IVERLYAT +A++CRNCD
Sbjct: 1 MDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD 60
Query: 61 FGNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDI-----DIENDNDIIDPYGGL 115
FG G I R + V + + ++++ ++E+D+D DP+ GL
Sbjct: 61 FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDF-DPFAGL 119
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
FDDEQK I+EIKE LEDPD SE++L++LLQ+L DMDITF+AL+ETDIGRHVN++RKH SN
Sbjct: 120 FDDEQKSIVEIKEKLEDPDLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSN 179
Query: 176 DVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMM-DGDSPQQKIPQNGN-HQVPDFAYS 233
+VR+L K LV+KWK+ VDEWVK NQPG+L +++ D DSP QK NG+ QVPDF YS
Sbjct: 180 NVRRLAKQLVKKWKETVDEWVKFNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYS 239
Query: 234 PNPHNGSSGSDKNN--SEPERKSKQ-APLPRKEALSSRPPQSASPAAPHSVQR--PREQK 288
P P NG S S KN+ +EPERK + AP PR+E+ P A P+ P Q+ PR+ K
Sbjct: 240 PVPQNGYSSSSKNSNITEPERKPRPVAPQPRRES-----PSPAKPSRPSPSQQTIPRD-K 293
Query: 289 ESRESTFDADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKPKNAFFGKNKGGSS 348
E +E FD +ARKRLQ+NY++ ENAK+QRTIQVMDIH+IPKPK F KGGSS
Sbjct: 294 EHKEVDFD------TARKRLQQNYRQAENAKKQRTIQVMDIHDIPKPKKGGFFPRKGGSS 347
Query: 349 Q-GRHW 353
Q GRHW
Sbjct: 348 QGGRHW 353
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 194/431 (45%), Gaps = 86/431 (19%)
Query: 3 LDDFRSILKTAG-VDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF 61
LD +R + G D++ ID AI+VA+ D + K RRDKI E L+ +C +RC CD
Sbjct: 7 LDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLF-SCRVNRCVGCDH 65
Query: 62 GNGVVDVNKEISRGQH----------DEVKAAQQASPSTPHSVNGDDDIDIEND------ 105
V + E +RG ++ + A + S +S GD++ + N
Sbjct: 66 LELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQIVSNYTFDEAE 125
Query: 106 --NDIIDPYGGLFDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIG 163
+D I+ + + E RI EI L D+ L+D L+ L M + LK T+IG
Sbjct: 126 ALSDEIEEFS-VVSKEVARIKEI--LLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIG 182
Query: 164 RHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQ-------PGELASSAMMDGDSPQ 216
+ VN LRKHSS+ +R+L K L+ +WK++VD+WV + E A+ +++D +
Sbjct: 183 KAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEEEAF 242
Query: 217 QKIPQ---------NG---NHQVPDFAYSPNPHNGS--SGSDKNNSEPERKSKQAPLPRK 262
+P NG +H + NP N + S ++ P+ +K+ P +
Sbjct: 243 PSLPYDVDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQNIAKRKPEGTQ 302
Query: 263 EALSSRPPQSASPAAP-------HSVQRPREQKESREST--------------------- 294
+ P +S P++ V++ EQ+ E+
Sbjct: 303 MRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKR 362
Query: 295 ------------FDADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPKPKNAFFGK 342
DAD++ A+++LQE+Y+ ENAK+QRTIQV+++ IPK +A +
Sbjct: 363 KAPGPQQEKLKGLDADAKFEFAKRKLQESYQHHENAKKQRTIQVLEM--IPKQGSAQKPQ 420
Query: 343 NKGGSSQGRHW 353
K R+W
Sbjct: 421 LKRPGMSNRNW 431
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 113/408 (27%), Positives = 176/408 (43%), Gaps = 111/408 (27%)
Query: 1 MDLDDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCD 60
+ LD +R + D++ ID AI+VA+ D+ E K R D+I E L+ +C SRC CD
Sbjct: 8 VSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLF-SCKVSRCIGCD 66
Query: 61 FGNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLFDDEQ 120
+ E+S + +G + E + +D
Sbjct: 67 --------HLELSIAGDEAAVEIVGVGGGGDRGDSGVATGEGEEASVSVD---------- 108
Query: 121 KRILEIKEHLEDPDQSEDA-LIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
++ I++ L + D +D+ L++ L+ L M ++ LK+T+IG+ VN LR+HSS+ + K
Sbjct: 109 -EVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISK 167
Query: 180 LVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPD----F----- 230
L K L +WK +VD+W +N P E+A + + P++ N V D F
Sbjct: 168 LAKTLFAEWKRLVDQW--MNTPEEMAGT---------EGTPESLNLSVIDEEEAFPSPPH 216
Query: 231 ---AYSPNPHNGSSGS--------DKN-----NSEPERKSKQAP---------------- 258
Y+P P NG S D N S+ ERKS+ +
Sbjct: 217 DLDIYAPEP-NGFELSQILDCLDCDGNPRHSVESKHERKSQSSAGRRPKGTNDANVVGRY 275
Query: 259 ----LPRKEALSSRPPQSASPAAPHSVQRPREQKESRE---------------------- 292
R+E RP + +A V+ R+ K+SRE
Sbjct: 276 CNDQQTRREEADVRPMKH---SATDVVEPKRQTKQSREQMVSAIQRKPTAVTEQKRKLAG 332
Query: 293 ------STFDADSRLASARKRLQENYKREENAKRQRTIQVMDIHEIPK 334
D DS+ A+++LQE+Y + ENAKRQRTIQV++ IPK
Sbjct: 333 PQQDKLKALDPDSKFEFAKRKLQESYHQHENAKRQRTIQVLET--IPK 378
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 25/178 (14%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI + E + ++E AL DLL+ L ++ + L+ T IG VN +RKH SN
Sbjct: 4 EEELLRIAKKLEKMVARKKTEGAL-DLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNK 62
Query: 176 DVRKLVKHLVRKWKDIVDEWVKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDFA-YSP 234
+V L K L+R WK ++D S A G+ ++++ + D + + P
Sbjct: 63 EVVALAKVLIRNWKQLLD------------SPATPKGEKGEERVKAKKKEKGLDCSDWKP 110
Query: 235 NPHNGSSGSDKNNSEPERKSKQAPLPRKEALSSRPPQSASPAAPHSVQRPREQKESRE 292
+ + S P +K + P R++++ S+ ++SP P S++R K E
Sbjct: 111 ---------ETSLSPPRKKRVEEPKDRRDSVDSKSSATSSPKRP-SMERSNSSKSKAE 158
>sp|A5PKE4|TEAN2_BOVIN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Bos taurus GN=TCEANC2
PE=2 SV=1
Length = 208
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 12/103 (11%)
Query: 110 DPYGGLFD----DEQKRILEI------KEHLEDPDQSEDALIDLLQSLADMDITFKALKE 159
DP G ++ + KR++ I K LE PDQS++ L++ L+ L + + LK
Sbjct: 19 DPGGKIYKQATIESLKRVVVIEDIKRWKTMLELPDQSKENLVEALRELKKKIPSREVLKS 78
Query: 160 TDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLNQPG 202
T IG VN++R+HS ++V L + + +W+ +++ V N+P
Sbjct: 79 TKIGHTVNKMRQHSDSEVACLAREVYTEWRTFIEKHV--NRPS 119
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 135 QSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+S + +DLL+ L M IT L+ T +G VN LRK SS+ +V L K L++ WK ++D
Sbjct: 22 KSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLD 81
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 135 QSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+S + +DLL+ L M +T L+ T +G VN LRK SS+ +V L K L++ WK ++D
Sbjct: 22 KSAEGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLD 81
>sp|Q96MN5|TEAN2_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Homo sapiens GN=TCEANC2
PE=1 SV=1
Length = 208
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ+++ L++ LQ L + + LK T IG VN++RKHS ++V L + +
Sbjct: 46 KTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYT 105
Query: 187 KWKDIVDE 194
+WK ++
Sbjct: 106 EWKTFTEK 113
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN LRK S++
Sbjct: 1 MEDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNALRKQSTD 59
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 60 EEVTSLAKSLIKSWKKLLD 78
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 141 IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+DLL+ L +M IT L+ T +G VN LRK SS+ ++ L K L++ WK ++D
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLD 80
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 141 IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+DLL+ L +M IT L+ T +G VN LRK SS+ ++ L K L++ WK ++D
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLD 80
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
++E RI + E + ++E AL DLL+ L ++ + L+ T IG VN +RKH S+
Sbjct: 3 LEEELLRIAKKLEKMVSRKKTEGAL-DLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSD 61
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 62 KEVVSLAKVLIKNWKRLLD 80
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S++
Sbjct: 1 MEDEVVRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTD 59
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 60 EEVTSLAKSLIKSWKKLLD 78
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 116 FDDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN 175
+DE RI + + + + AL DLL+ L ++ +T + L+ T IG VN +RK S++
Sbjct: 1 MEDEVIRIAKKMDKMVQKKNAAGAL-DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTD 59
Query: 176 -DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 60 EEVTSLAKSLIKSWKKLLD 78
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 141 IDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
+DLL+ L ++ +T + L+ T IG VN +RK S++ +V L K L++ WK ++D
Sbjct: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLD 78
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSND 176
++E RI + + +D +DLL++L ++I L +T IG VN+LRK S +D
Sbjct: 4 EEEVFRIQKKMSKMASDGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDD 63
Query: 177 -VRKLVKHLVRKWKDIV 192
V L K L++ WK +
Sbjct: 64 EVIALAKTLIKNWKRFL 80
>sp|Q8R2M0|TEAN2_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Mus musculus GN=Tceanc2
PE=2 SV=2
Length = 207
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 127 KEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVR 186
K LE PDQ+++ L+ LQ L + + L+ T IG VN++R+HS +V L K +
Sbjct: 45 KTMLELPDQTKENLVAALQELKKKMPSREVLRSTRIGHAVNKMRRHSDPEVAGLAKEVYT 104
Query: 187 KWKDIVDE 194
+WK +++
Sbjct: 105 EWKTFIEK 112
>sp|Q90YY5|MED26_XENLA Mediator of RNA polymerase II transcription subunit 26 OS=Xenopus
laevis GN=med26 PE=2 SV=1
Length = 597
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+++++ SL IT +AL+ET +G+ +N +RK +SN D+ K K L+R W+ +++
Sbjct: 30 AVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRNWQKLIE 85
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 117 DDEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN- 175
++E RI + E + +E AL DLL+ L ++ + L+ T IG VN +RKH S+
Sbjct: 4 EEELLRIAKKLEKMVARKNTEGAL-DLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDK 62
Query: 176 DVRKLVKHLVRKWKDIVD 193
+V L K L++ WK ++D
Sbjct: 63 EVVSLAKVLIKNWKRLLD 80
>sp|Q9VCP0|ELOA1_DROME Transcription elongation factor B polypeptide 3 OS=Drosophila
melanogaster GN=EloA PE=1 SV=1
Length = 643
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 126 IKEHLEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLV 185
I++H ED E L+ + L ++ I F+ L+ET IG+ VN LRK S +V K LV
Sbjct: 18 IEKHGED----EQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRK-ISGEVGVAAKTLV 72
Query: 186 RKWKDIV 192
KWK +V
Sbjct: 73 TKWKAMV 79
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 121 KRILEIKEHLEDPDQSEDALIDLLQSL-ADMDITFKALKETDIGRHVNQLRKHSSNDVRK 179
K +L ++LE ++ A++++L L + T K L+ET +G VN+ +K ++ ++ K
Sbjct: 4 KEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISK 63
Query: 180 LVKHLVRKWKDIVDE 194
LVK ++ WKD +++
Sbjct: 64 LVKKMISSWKDAINK 78
>sp|O95402|MED26_HUMAN Mediator of RNA polymerase II transcription subunit 26 OS=Homo
sapiens GN=MED26 PE=1 SV=2
Length = 600
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+++++ SL IT +AL+ET +G+ +N +RK + N ++ K K L+R W+ +++
Sbjct: 30 AVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIE 85
>sp|Q5XIC7|TEAN2_RAT Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Rattus norvegicus
GN=Tceanc2 PE=2 SV=1
Length = 207
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 130 LEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWK 189
LE P+Q+++ L+ LQ L + + L+ T IG VN++R+HS +V L K + +WK
Sbjct: 48 LELPEQTKENLVAALQELKKKIPSREVLRSTRIGHAVNKVRRHSDPEVAGLAKEVYTEWK 107
Query: 190 DIVD 193
++
Sbjct: 108 TFIE 111
>sp|Q7TN02|MED26_MOUSE Mediator of RNA polymerase II transcription subunit 26 OS=Mus
musculus GN=Med26 PE=2 SV=1
Length = 588
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+++++ SL IT +AL+ET +G+ +N +RK + N ++ K K L+R W+ +++
Sbjct: 30 AVLEVISSLERYPITKEALEETRLGKLINDVRKKTKNEELAKRAKRLLRSWQKLIE 85
>sp|Q90YL3|MED26_DANRE Mediator of RNA polymerase II transcription subunit 26 OS=Danio
rerio GN=med26 PE=2 SV=2
Length = 589
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A++D++ +L IT +AL+ET +G+ +N +RK + + D+ K K L+R W+ +++
Sbjct: 30 AVLDVITNLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIE 85
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 123 ILEIKEHLEDP--DQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSNDVRKL 180
I++ +E LE D D ++ L++ + IT LK TDIG+ V +LR H +
Sbjct: 4 IIKCREQLEKAIKDGEFDKALECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGISSQ 63
Query: 181 VKHLVRKWK 189
K L+ KWK
Sbjct: 64 SKELIDKWK 72
>sp|A5PK23|MED26_BOVIN Mediator of RNA polymerase II transcription subunit 26 OS=Bos
taurus GN=MED26 PE=2 SV=1
Length = 599
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 139 ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKWKDIVD 193
A+ +++ SL IT +AL+ET +G+ +N +RK + N ++ K K L+R W+ +++
Sbjct: 30 AVQEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIE 85
>sp|B0UYI1|TEAN2_DANRE Transcription elongation factor A N-terminal and central
domain-containing protein 2 OS=Danio rerio GN=tceanc2
PE=3 SV=1
Length = 210
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 130 LEDPDQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSSN-DVRKLVKHLVRKW 188
LE P Q ++ +I+ L+ L + + LK T IG VN LRKHS + +++ L K + + W
Sbjct: 48 LELPGQPKENMIEALKELDKKVPSREVLKSTRIGHTVNNLRKHSDDPEIKSLAKEVYKHW 107
Query: 189 KDIVDE 194
+ ++E
Sbjct: 108 RTFIEE 113
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 35/140 (25%)
Query: 143 LLQSLADMDITFKALKETDIGRHVNQLRKHSSND-VRKLVKHLVRKWKDIVDEWVKLNQP 201
LL L+ + ++ + +++T+IG VN +RK ++D V K K++++ WK++VD
Sbjct: 31 LLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWKNVVDG------- 83
Query: 202 GELASSAMMDGDSPQQKIPQNGNHQVPDFAYSPNPHNGSSGSDKNNSEPERKSKQAPLPR 261
S + DG +P K H S + ++PE+K +AP R
Sbjct: 84 ---KSKSQDDGGAPPAK-----------------KHRKESVEE---AKPEKKKIEAPYKR 120
Query: 262 KEALSSRP---PQSASPAAP 278
E SSRP Q AS + P
Sbjct: 121 PEP-SSRPEIVAQFASASFP 139
>sp|Q9V4F9|MED26_DROME Mediator of RNA polymerase II transcription subunit 26
OS=Drosophila melanogaster GN=MED26 PE=1 SV=2
Length = 1483
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 120 QKRILEIKEHLEDP-DQSED-----ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHS 173
Q I E+ HL DQ+ D A++ ++ +L IT + L+ T + +++NQLR+ +
Sbjct: 3 QIEIQELTTHLSQALDQNYDVVNMDAVLCVICALEGTTITKEQLEATRLAKYINQLRRRT 62
Query: 174 SND-VRKLVKHLVRKWKDIV----DEWVKLNQPGELASS 207
N+ + + K L++KW+++V L P +++SS
Sbjct: 63 KNEHLARRAKSLLKKWREMVGIQQTATENLAHPSQISSS 101
>sp|Q29CV2|MED26_DROPS Mediator of RNA polymerase II transcription subunit 26
OS=Drosophila pseudoobscura pseudoobscura GN=MED26 PE=3
SV=2
Length = 1602
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 120 QKRILEIKEHLEDP-DQSED-----ALIDLLQSLADMDITFKALKETDIGRHVNQLRKHS 173
Q +I ++ HL DQ+ D A++ ++ +L IT + L+ T + +++NQLR+ +
Sbjct: 3 QNQIQQLTSHLSQALDQNYDVVNMDAVLSVICALEGTTITKEQLEATRLAKYINQLRRRT 62
Query: 174 SND-VRKLVKHLVRKWKDIV 192
N+ + + K L++ W+++V
Sbjct: 63 KNEHLARRAKSLLKMWREMV 82
>sp|Q63187|ELOA1_RAT Transcription elongation factor B polypeptide 3 OS=Rattus
norvegicus GN=Tceb3 PE=1 SV=1
Length = 773
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 152 ITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKLN-----QPGELAS 206
IT L ET +G+ VN RKH V + LV +WK +V V+ N Q E ++
Sbjct: 38 ITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLVP--VERNNEAEDQDFEKSN 93
Query: 207 SAMMDGDSPQQKIPQNGNHQ 226
S D PQQ+ GN+Q
Sbjct: 94 SRKRPRDVPQQEEEAEGNYQ 113
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 OS=Homo sapiens
GN=TCEB3 PE=1 SV=2
Length = 798
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 152 ITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIV 192
IT L ET +G+ VN LRKH V + LV +WK +V
Sbjct: 64 ITVDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLV 102
>sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypeptide 3 OS=Mus musculus
GN=Tceb3 PE=1 SV=3
Length = 773
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 152 ITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIV 192
IT L ET +G+ VN RKH V + LV +WK +V
Sbjct: 38 ITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLV 76
>sp|O35964|SH3G1_RAT Endophilin-A2 OS=Rattus norvegicus GN=Sh3gl1 PE=1 SV=1
Length = 368
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 4 DDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF-- 61
DDFR + K VD+ + +LV +++Y R K+ + I + +N +
Sbjct: 31 DDFREMEKK--VDITSKAVAEVLVRTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQ 88
Query: 62 -----GNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLF 116
G +V KE+ G+ + A A S D +DIE + IDP L
Sbjct: 89 SEGLLGECMVRHGKELG-GESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 147
Query: 117 DDEQKRILEIKEHL 130
D + K EI+ HL
Sbjct: 148 DKDLK---EIQHHL 158
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 123 ILEIKEHLEDPDQSE--DALIDLLQSLADMDI-TFKALKETDIGRHVNQLRKHSSNDVRK 179
I K LE Q + + +I+++ L + + T + LKET +G V +LR H + V +
Sbjct: 6 IRSAKAALEKAIQGKNIETIINIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGE 65
Query: 180 LVKHLVRKWK 189
+ +V+KWK
Sbjct: 66 QAREIVKKWK 75
>sp|Q62419|SH3G1_MOUSE Endophilin-A2 OS=Mus musculus GN=Sh3gl1 PE=1 SV=1
Length = 368
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 4 DDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF-- 61
DDF+ + K VDV + +LV +++Y R K+ + I + +N +
Sbjct: 31 DDFKDMEKK--VDVTSKAVAEVLVRTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQ 88
Query: 62 -----GNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLF 116
G +V KE+ G+ + A A S D +DIE + IDP L
Sbjct: 89 SEGLLGECMVRHGKELG-GESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 147
Query: 117 DDEQKRILEIKEHL 130
D + K EI+ HL
Sbjct: 148 DKDLK---EIQHHL 158
>sp|O31437|YBDO_BACSU Uncharacterized protein YbdO OS=Bacillus subtilis (strain 168)
GN=ybdO PE=4 SV=1
Length = 394
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 118 DEQKRILEIKEHLEDPDQSEDALIDLLQSLADMDITF--KALKETDIGRHVNQLRKHSSN 175
D+Q I +I++ L+ D S++ + +++S + F +A K+ R + ++ +
Sbjct: 236 DDQDLIKQIEQVLQSGDNSKELFLHIMKSQSSDSAQFSEEAYKKYQAAREMYEVTGYHLK 295
Query: 176 DVRKL-VKHLVRKWKDIVD----EWVKLNQPGELASSAMMDGDSPQQKIPQNGNHQVPDF 230
D+ + +++ + +D++D E K + AS A+ S KI + G + +PDF
Sbjct: 296 DLEVIDGRYVTPEGRDLMDVYKEELEKDPVQKQTASYAISYYRSELSKIAEAGYNAIPDF 355
Query: 231 AYSPNPHNGS 240
S + NGS
Sbjct: 356 ILSIDYSNGS 365
>sp|Q2KJA1|SH3G1_BOVIN Endophilin-A2 OS=Bos taurus GN=SH3GL1 PE=2 SV=1
Length = 368
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 4 DDFRSILKTAGVDVWTFIDTAILVASLDYATELKERRDKIVERLYATCIASRCRNCDF-- 61
DDF+ + K VDV + T +L +++Y R K+ + I + +N +
Sbjct: 31 DDFKEMEKK--VDVTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQ 88
Query: 62 -----GNGVVDVNKEISRGQHDEVKAAQQASPSTPHSVNGDDDIDIENDNDIIDPYGGLF 116
G ++ KE+ G+ + A A S D +DIE + IDP L
Sbjct: 89 SEGLLGECMIRHGKELG-GESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC 147
Query: 117 DDEQKRILEIKEHL 130
D + K EI+ HL
Sbjct: 148 DKDLK---EIQHHL 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,339,274
Number of Sequences: 539616
Number of extensions: 6446011
Number of successful extensions: 26239
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 389
Number of HSP's that attempted gapping in prelim test: 25431
Number of HSP's gapped (non-prelim): 1090
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)