Query 018587
Match_columns 353
No_of_seqs 161 out of 433
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjt_A Transcription elongatio 99.7 7.4E-19 2.5E-23 145.9 2.6 79 120-198 11-92 (103)
2 1pqv_S STP-alpha, transcriptio 99.6 1.2E-15 3.9E-20 147.0 8.8 79 120-198 3-82 (309)
3 2xpp_A IWS1, ECU08_0440; trans 97.7 2.1E-05 7.2E-10 68.7 4.2 69 124-192 64-138 (145)
4 3nfq_A Transcription factor IW 97.5 5.3E-05 1.8E-09 67.9 3.6 68 125-192 80-153 (170)
5 2b4j_C PC4 and SFRS1 interacti 94.4 0.084 2.9E-06 43.4 6.3 69 125-193 14-84 (98)
6 1z9e_A PC4 and SFRS1 interacti 92.8 0.12 4E-06 44.4 4.8 69 125-193 14-84 (127)
7 2q2f_A Selenoprotein S; anti-p 37.9 12 0.0004 30.3 1.3 32 295-326 43-85 (89)
8 1nwd_B GAD, glutamate decarbox 19.7 62 0.0021 20.5 2.0 15 182-196 12-26 (28)
9 2i7u_A Four-alpha-helix bundle 13.5 1.4E+02 0.0049 21.9 2.9 25 176-200 3-27 (62)
10 1x5b_A Signal transducing adap 12.7 1.5E+02 0.0053 25.3 3.5 22 172-193 107-128 (163)
No 1
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.73 E-value=7.4e-19 Score=145.87 Aligned_cols=79 Identities=32% Similarity=0.552 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhCCC--CCCHHHHHHHHHHhhcCCCCHHHhhccCcccccchhccC-CCHHHHHHHHHHHHHHHHhHHHHh
Q 018587 120 QKRILEIKEHLEDP--DQSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKH-SSNDVRKLVKHLVRKWKDIVDEWV 196 (353)
Q Consensus 120 ~~EV~rIKk~Le~~--~~see~llelLr~L~~l~iT~dlLk~T~IGkaVn~LRKH-~s~~I~~LAk~LVkkWK~~V~e~~ 196 (353)
++||++|++.|++. ..+++.++++|++|+.++||+++|++|+||++||+|||| ++++|+.+|+.||++||++|+.+.
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~v~~~~ 90 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPR 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 56899999998874 346678999999999999999999999999999999999 779999999999999999998865
Q ss_pred hc
Q 018587 197 KL 198 (353)
Q Consensus 197 ~~ 198 (353)
+.
T Consensus 91 ~~ 92 (103)
T 1wjt_A 91 TT 92 (103)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 2
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.60 E-value=1.2e-15 Score=147.04 Aligned_cols=79 Identities=29% Similarity=0.529 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHh-hcCCCCHHHhhccCcccccchhccCCCHHHHHHHHHHHHHHHHhHHHHhhc
Q 018587 120 QKRILEIKEHLEDPDQSEDALIDLLQSL-ADMDITFKALKETDIGRHVNQLRKHSSNDVRKLVKHLVRKWKDIVDEWVKL 198 (353)
Q Consensus 120 ~~EV~rIKk~Le~~~~see~llelLr~L-~~l~iT~dlLk~T~IGkaVn~LRKH~s~~I~~LAk~LVkkWK~~V~e~~~~ 198 (353)
++||++|++.|++...+.+.++++|++| +.++||+++|++|+||++||+||||.+++|+.+|+.||++||++|..+...
T Consensus 3 ~~el~~~~~~L~k~~~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~~v~~~~~~ 82 (309)
T 1pqv_S 3 SKEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKDAINKNKRS 82 (309)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5699999999999667889999999999 999999999999999999999999999999999999999999999988765
No 3
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.72 E-value=2.1e-05 Score=68.75 Aligned_cols=69 Identities=33% Similarity=0.428 Sum_probs=56.2
Q ss_pred HHHHHHhCC-CC---CCHHHHHHHHHHhhcCCCCHHHhhccCcccccchhccCCC--HHHHHHHHHHHHHHHHhH
Q 018587 124 LEIKEHLED-PD---QSEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSS--NDVRKLVKHLVRKWKDIV 192 (353)
Q Consensus 124 ~rIKk~Le~-~~---~see~llelLr~L~~l~iT~dlLk~T~IGkaVn~LRKH~s--~~I~~LAk~LVkkWK~~V 192 (353)
..|+.-|+- ++ .+..---.+|+.|..|||+.+.|+.++||++|.-|.||+. ++++++|+.||.+|...+
T Consensus 64 ~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi 138 (145)
T 2xpp_A 64 DEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEV 138 (145)
T ss_dssp HHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHH
Confidence 345555653 12 2444557788999999999999999999999999999976 799999999999998765
No 4
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.50 E-value=5.3e-05 Score=67.90 Aligned_cols=68 Identities=26% Similarity=0.463 Sum_probs=53.6
Q ss_pred HHHHHhCC-CCC---CHHHHHHHHHHhhcCCCCHHHhhccCcccccchhccCCC--HHHHHHHHHHHHHHHHhH
Q 018587 125 EIKEHLED-PDQ---SEDALIDLLQSLADMDITFKALKETDIGRHVNQLRKHSS--NDVRKLVKHLVRKWKDIV 192 (353)
Q Consensus 125 rIKk~Le~-~~~---see~llelLr~L~~l~iT~dlLk~T~IGkaVn~LRKH~s--~~I~~LAk~LVkkWK~~V 192 (353)
.|+.-|+- ++. +..---.+|+-|..|||+.+.|+.++||++|.-|.||+. ++++.+|..||.+|..-|
T Consensus 80 ~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI 153 (170)
T 3nfq_A 80 SVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPI 153 (170)
T ss_dssp HHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHH
Confidence 44555553 221 334447788888899999999999999999999999976 789999999999996543
No 5
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=94.37 E-value=0.084 Score=43.42 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=55.5
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhcCCCCHHHhh-ccCcccccchhccC-CCHHHHHHHHHHHHHHHHhHH
Q 018587 125 EIKEHLEDPDQSEDALIDLLQSLADMDITFKALK-ETDIGRHVNQLRKH-SSNDVRKLVKHLVRKWKDIVD 193 (353)
Q Consensus 125 rIKk~Le~~~~see~llelLr~L~~l~iT~dlLk-~T~IGkaVn~LRKH-~s~~I~~LAk~LVkkWK~~V~ 193 (353)
.|+..|--..-+...++++|..|..+++|.-+|+ .+.|=-++.+||+. .+..|++.|..|+.+.|.++.
T Consensus 14 ~ik~~L~~~~~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~kfK~~f~ 84 (98)
T 2b4j_C 14 EIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (98)
T ss_dssp HHHHHTCTTSCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHccCCCCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Confidence 4455554334578999999999999999999655 56688899999876 568999999999999999884
No 6
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=92.79 E-value=0.12 Score=44.42 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=56.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHhhcCCCCHHHhh-ccCcccccchhccC-CCHHHHHHHHHHHHHHHHhHH
Q 018587 125 EIKEHLEDPDQSEDALIDLLQSLADMDITFKALK-ETDIGRHVNQLRKH-SSNDVRKLVKHLVRKWKDIVD 193 (353)
Q Consensus 125 rIKk~Le~~~~see~llelLr~L~~l~iT~dlLk-~T~IGkaVn~LRKH-~s~~I~~LAk~LVkkWK~~V~ 193 (353)
.|+..|--..-+...++++|..|..|+||.-+|+ .+.|=-++.+||+. .|..|++.|..|+.+.|.++.
T Consensus 14 ~Ik~~L~v~~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~ 84 (127)
T 1z9e_A 14 EIKNSLKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (127)
T ss_dssp HHHHHTCGGGCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 3444443223478899999999999999999665 56688899999876 568999999999999999985
No 7
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=37.94 E-value=12 Score=30.25 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHHHhH-----------HHHHHhhhccceee
Q 018587 295 FDADSRLASARKRLQENY-----------KREENAKRQRTIQV 326 (353)
Q Consensus 295 ~d~~~kl~aakrkLqe~Y-----------qeAenAKkQRtIQv 326 (353)
+--.+.|++||+|.||.| ++.|-.|||..|..
T Consensus 43 v~RQEAl~aaRlRMQEeldAqAe~~keKQkqlEEeKR~qkIe~ 85 (89)
T 2q2f_A 43 VKRQEALAAARLKMQEELNAQVEKHKEKLKQLEEEKRRQKIEM 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568999999999976 34555677766643
No 8
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=19.74 E-value=62 Score=20.53 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHh
Q 018587 182 KHLVRKWKDIVDEWV 196 (353)
Q Consensus 182 k~LVkkWK~~V~e~~ 196 (353)
-.+|..||+.|++..
T Consensus 12 lemitawkkfveekk 26 (28)
T 1nwd_B 12 LEMITAWKKFVEEKK 26 (28)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhh
Confidence 468999999998754
No 9
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=13.52 E-value=1.4e+02 Score=21.87 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcCC
Q 018587 176 DVRKLVKHLVRKWKDIVDEWVKLNQ 200 (353)
Q Consensus 176 ~I~~LAk~LVkkWK~~V~e~~~~~~ 200 (353)
.++.-|..|+..||++.++..+...
T Consensus 3 klreeaaklfeewkklaeeaaklle 27 (62)
T 2i7u_A 3 KLREEAAKLFEEWKKLAEEAAKLLE 27 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677889999999999987766543
No 10
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=12.65 E-value=1.5e+02 Score=25.28 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhHH
Q 018587 172 HSSNDVRKLVKHLVRKWKDIVD 193 (353)
Q Consensus 172 H~s~~I~~LAk~LVkkWK~~V~ 193 (353)
..++.|+..+..||..|.....
T Consensus 107 ~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 107 KAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999998654
Done!