Query 018588
Match_columns 353
No_of_seqs 164 out of 412
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00179 acyl- [acyl-carrier p 100.0 9E-131 2E-135 963.1 32.2 342 9-353 48-390 (390)
2 PF03405 FA_desaturase_2: Fatt 100.0 5E-119 1E-123 875.6 23.4 330 19-351 1-330 (330)
3 cd01050 Acyl_ACP_Desat Acyl AC 100.0 7E-101 1E-105 741.2 29.4 297 21-328 1-297 (297)
4 cd00657 Ferritin_like Ferritin 98.8 6.3E-08 1.4E-12 76.9 12.2 126 85-226 3-129 (130)
5 PF11583 AurF: P-aminobenzoate 98.1 0.00011 2.3E-09 71.2 14.7 216 20-247 6-244 (304)
6 cd01049 RNRR2 Ribonucleotide R 97.4 0.0057 1.2E-07 58.6 15.6 186 45-247 20-225 (288)
7 cd01041 Rubrerythrin Rubreryth 97.1 0.0076 1.6E-07 51.7 11.0 99 116-229 32-132 (134)
8 cd01055 Nonheme_Ferritin nonhe 97.0 0.014 3E-07 50.9 12.2 109 115-233 33-142 (156)
9 cd01045 Ferritin_like_AB Uncha 96.9 0.014 3E-07 48.3 11.1 122 93-226 12-138 (139)
10 PF00268 Ribonuc_red_sm: Ribon 96.9 0.023 5E-07 54.7 13.6 114 116-233 84-211 (281)
11 cd07911 RNRR2_Rv0233_like Ribo 96.8 0.035 7.5E-07 53.6 14.1 126 117-246 78-219 (280)
12 cd07908 Mn_catalase_like Manga 96.8 0.012 2.5E-07 51.6 9.7 105 116-226 46-153 (154)
13 cd01046 Rubrerythrin_like rubr 96.7 0.021 4.5E-07 48.8 10.6 92 116-231 32-123 (123)
14 PF02915 Rubrerythrin: Rubrery 96.6 0.0017 3.7E-08 53.9 3.3 101 119-226 31-136 (137)
15 PRK08326 ribonucleotide-diphos 96.5 0.058 1.3E-06 53.2 13.7 115 117-236 95-229 (311)
16 PRK09614 nrdF ribonucleotide-d 96.5 0.058 1.3E-06 53.1 13.4 180 31-238 20-220 (324)
17 cd01051 Mn_catalase Manganese 96.4 0.047 1E-06 48.9 11.4 103 116-229 52-154 (156)
18 cd00907 Bacterioferritin Bacte 96.4 0.15 3.3E-06 44.0 14.2 114 116-240 36-149 (153)
19 PF00210 Ferritin: Ferritin-li 96.4 0.07 1.5E-06 44.4 11.6 111 115-230 29-139 (142)
20 PF02915 Rubrerythrin: Rubrery 96.1 0.017 3.8E-07 47.8 6.6 54 176-230 3-56 (137)
21 PRK07209 ribonucleotide-diphos 95.5 0.72 1.6E-05 46.6 16.4 181 31-236 57-268 (369)
22 PRK10635 bacterioferritin; Pro 95.5 0.32 6.9E-06 43.7 12.2 103 116-229 37-140 (158)
23 COG1633 Uncharacterized conser 95.3 0.36 7.8E-06 44.2 12.2 134 87-232 31-171 (176)
24 PTZ00211 ribonucleoside-diphos 95.1 0.47 1E-05 47.1 13.4 175 31-236 30-227 (330)
25 cd01052 DPSL DPS-like protein, 94.9 0.6 1.3E-05 40.0 11.9 108 115-226 36-147 (148)
26 PRK13967 nrdF1 ribonucleotide- 94.8 1.4 3E-05 43.8 15.9 112 116-231 87-210 (322)
27 COG0208 NrdF Ribonucleotide re 94.8 1.2 2.5E-05 45.1 15.4 183 31-244 35-249 (348)
28 PRK12759 bifunctional gluaredo 94.7 0.68 1.5E-05 47.4 13.6 179 31-236 106-302 (410)
29 PF13668 Ferritin_2: Ferritin- 94.6 0.37 7.9E-06 41.2 9.7 98 116-228 37-136 (137)
30 cd01044 Ferritin_CCC1_N Ferrit 94.4 0.086 1.9E-06 44.8 5.4 46 182-230 9-54 (125)
31 PRK13965 ribonucleotide-diphos 94.2 1.7 3.7E-05 43.4 15.0 105 120-229 104-221 (335)
32 TIGR00754 bfr bacterioferritin 94.1 1.4 3E-05 38.8 12.7 106 116-231 37-142 (157)
33 PRK13966 nrdF2 ribonucleotide- 93.9 2.6 5.6E-05 41.9 15.5 180 31-236 22-217 (324)
34 PF04305 DUF455: Protein of un 93.7 1.1 2.4E-05 43.4 12.0 128 91-247 77-225 (253)
35 PLN02492 ribonucleoside-diphos 93.6 1.8 3.8E-05 42.9 13.6 116 116-235 86-215 (324)
36 cd01056 Euk_Ferritin eukaryoti 93.5 1 2.2E-05 39.9 10.8 110 116-234 36-147 (161)
37 PRK09101 nrdB ribonucleotide-d 93.1 4 8.7E-05 41.4 15.7 35 202-236 225-261 (376)
38 PF02332 Phenol_Hydrox: Methan 93.1 3.3 7.2E-05 39.2 14.1 140 86-236 80-233 (233)
39 cd01041 Rubrerythrin Rubreryth 92.7 0.69 1.5E-05 39.6 8.2 99 182-289 12-117 (134)
40 PRK10304 ferritin; Provisional 92.6 2.5 5.4E-05 38.1 12.0 104 116-229 36-143 (165)
41 cd01046 Rubrerythrin_like rubr 91.7 1.5 3.3E-05 37.3 9.1 90 181-284 11-100 (123)
42 cd01045 Ferritin_like_AB Uncha 91.3 0.75 1.6E-05 37.8 6.7 49 180-231 7-55 (139)
43 cd00657 Ferritin_like Ferritin 91.0 0.97 2.1E-05 35.3 6.8 51 178-231 5-55 (130)
44 PRK13456 DNA protection protei 89.7 12 0.00025 35.0 13.5 144 79-237 19-168 (186)
45 COG1592 Rubrerythrin [Energy p 89.6 2.7 5.8E-05 38.4 9.1 85 183-277 16-100 (166)
46 PF05138 PaaA_PaaC: Phenylacet 88.0 1.7 3.8E-05 42.1 7.3 156 125-299 54-225 (263)
47 cd01048 Ferritin_like_AB2 Unch 87.1 4.6 9.9E-05 35.0 8.7 92 127-226 36-134 (135)
48 cd01043 DPS DPS protein, ferri 86.8 9.1 0.0002 32.6 10.3 113 112-225 25-137 (139)
49 cd07908 Mn_catalase_like Manga 86.8 1.5 3.2E-05 38.3 5.5 54 180-235 25-78 (154)
50 COG1633 Uncharacterized conser 86.0 2.7 5.9E-05 38.5 7.0 61 171-234 24-84 (176)
51 TIGR02029 AcsF magnesium-proto 85.4 1.6 3.5E-05 43.6 5.5 41 187-228 89-129 (337)
52 cd01057 AAMH_A Aromatic and Al 85.1 15 0.00034 38.5 12.9 116 117-236 107-235 (465)
53 cd00904 Ferritin Ferritin iron 84.0 8.1 0.00018 34.2 9.0 107 116-231 36-144 (160)
54 PRK12775 putative trifunctiona 83.3 19 0.00041 41.3 13.5 142 79-235 859-1003(1006)
55 cd01047 ACSF Aerobic Cyclase S 82.5 2.4 5.2E-05 42.3 5.3 42 186-228 78-119 (323)
56 CHL00185 ycf59 magnesium-proto 82.4 2.5 5.4E-05 42.5 5.5 41 187-228 95-135 (351)
57 PRK13654 magnesium-protoporphy 81.9 2.6 5.5E-05 42.6 5.3 41 187-228 99-139 (355)
58 PLN02508 magnesium-protoporphy 81.0 2.4 5.3E-05 42.7 4.8 41 187-228 95-135 (357)
59 cd01058 AAMH_B Aromatic and Al 80.5 31 0.00066 34.2 12.3 116 117-236 129-260 (304)
60 cd01044 Ferritin_CCC1_N Ferrit 80.1 25 0.00054 29.7 10.2 99 116-228 26-124 (125)
61 cd07910 MiaE MiaE tRNA-modifyi 79.2 19 0.00041 33.4 9.7 110 116-232 47-160 (180)
62 COG4445 MiaE Hydroxylase for s 69.8 21 0.00045 33.1 7.3 122 123-253 64-191 (203)
63 TIGR02029 AcsF magnesium-proto 69.5 8.2 0.00018 38.8 5.0 54 97-154 165-218 (337)
64 PRK12775 putative trifunctiona 68.7 11 0.00025 43.0 6.7 54 173-229 862-915 (1006)
65 cd01047 ACSF Aerobic Cyclase S 68.4 5.1 0.00011 40.0 3.3 54 97-154 155-208 (323)
66 PRK15022 ferritin-like protein 66.9 1E+02 0.0022 28.1 12.3 104 116-229 36-140 (167)
67 PLN02508 magnesium-protoporphy 66.4 5.6 0.00012 40.1 3.3 35 116-154 190-224 (357)
68 TIGR02158 PA_CoA_Oxy3 phenylac 66.1 78 0.0017 30.5 10.8 116 127-247 32-153 (237)
69 cd01048 Ferritin_like_AB2 Unch 66.1 13 0.00027 32.3 5.1 49 175-229 4-52 (135)
70 PF00268 Ribonuc_red_sm: Ribon 65.7 15 0.00032 35.4 6.0 90 124-237 29-118 (281)
71 CHL00185 ycf59 magnesium-proto 64.4 6.6 0.00014 39.6 3.3 35 116-154 190-224 (351)
72 PRK13654 magnesium-protoporphy 62.7 4.2 9.1E-05 41.1 1.6 45 97-141 175-219 (355)
73 PF09968 DUF2202: Uncharacteri 59.6 63 0.0014 29.5 8.4 91 128-229 36-140 (162)
74 cd01055 Nonheme_Ferritin nonhe 57.4 28 0.00061 30.1 5.7 48 182-229 14-61 (156)
75 TIGR02156 PA_CoA_Oxy1 phenylac 54.2 2.3E+02 0.0051 28.1 14.4 160 127-298 63-233 (289)
76 cd01050 Acyl_ACP_Desat Acyl AC 53.8 56 0.0012 32.5 7.8 80 173-254 61-144 (297)
77 TIGR03225 benzo_boxB benzoyl-C 53.2 65 0.0014 33.6 8.2 106 123-233 142-256 (471)
78 PF06175 MiaE: tRNA-(MS[2]IO[6 52.8 42 0.00092 32.5 6.5 149 51-233 61-212 (240)
79 PF05067 Mn_catalase: Manganes 52.3 1.3E+02 0.0028 29.9 9.9 112 120-234 56-198 (283)
80 COG2186 FadR Transcriptional r 52.2 35 0.00077 32.3 5.9 61 184-247 149-225 (241)
81 PRK13778 paaA phenylacetate-Co 51.1 2.7E+02 0.006 28.0 15.0 116 127-247 81-201 (314)
82 COG1592 Rubrerythrin [Energy p 49.1 34 0.00073 31.4 5.0 40 193-232 92-131 (166)
83 cd00907 Bacterioferritin Bacte 48.6 46 0.001 28.4 5.6 48 182-229 16-63 (153)
84 cd01042 DMQH Demethoxyubiquino 48.1 40 0.00086 30.7 5.3 37 200-237 26-62 (165)
85 PRK08326 ribonucleotide-diphos 44.6 39 0.00085 33.4 5.1 28 203-230 95-122 (311)
86 cd07911 RNRR2_Rv0233_like Ribo 43.7 83 0.0018 30.3 7.1 33 200-232 75-107 (280)
87 PF13763 DUF4167: Domain of un 43.5 56 0.0012 26.6 4.9 35 190-231 42-76 (80)
88 PF06667 PspB: Phage shock pro 43.4 45 0.00098 26.7 4.3 45 286-335 21-65 (75)
89 cd01049 RNRR2 Ribonucleotide R 42.1 46 0.00099 31.8 5.0 33 200-232 74-106 (288)
90 PRK13456 DNA protection protei 41.3 3.1E+02 0.0066 25.7 10.4 114 175-289 24-146 (186)
91 PRK09458 pspB phage shock prot 40.0 45 0.00098 26.8 3.8 44 288-336 23-66 (75)
92 cd01052 DPSL DPS-like protein, 38.5 1.2E+02 0.0026 25.7 6.6 59 183-242 18-76 (148)
93 cd01051 Mn_catalase Manganese 35.3 78 0.0017 28.3 5.1 54 177-232 29-82 (156)
94 TIGR02976 phageshock_pspB phag 34.9 72 0.0016 25.5 4.2 45 286-335 21-65 (75)
95 COG3396 Uncharacterized conser 34.4 53 0.0012 32.3 4.1 41 202-242 45-87 (265)
96 COG3396 Uncharacterized conser 33.4 4.9E+02 0.011 25.7 12.9 118 125-247 56-179 (265)
97 smart00337 BCL BCL (B-Cell lym 33.3 69 0.0015 26.3 4.1 34 216-250 9-42 (100)
98 PRK07209 ribonucleotide-diphos 32.6 1E+02 0.0022 31.3 6.0 41 196-237 121-161 (369)
99 COG2833 Uncharacterized protei 31.4 4E+02 0.0086 26.2 9.3 80 193-287 180-262 (268)
100 PRK09614 nrdF ribonucleotide-d 31.3 1.3E+02 0.0029 29.5 6.5 35 196-230 81-115 (324)
101 COG3461 Uncharacterized conser 30.3 2.3E+02 0.0049 23.9 6.5 49 177-228 22-71 (103)
102 TIGR00865 bcl-2 Apoptosis regu 30.2 1.1E+02 0.0023 29.2 5.3 35 216-251 79-113 (213)
103 PF04305 DUF455: Protein of un 27.5 48 0.001 32.2 2.5 21 209-229 104-124 (253)
104 PF11583 AurF: P-aminobenzoate 26.7 1.6E+02 0.0035 28.4 6.1 30 202-231 111-140 (304)
105 PF07742 BTG: BTG family; Int 26.3 90 0.002 26.9 3.8 68 136-215 11-82 (118)
106 PF00452 Bcl-2: Apoptosis regu 25.9 1.4E+02 0.0031 23.8 4.8 32 216-247 9-40 (101)
107 PRK10421 DNA-binding transcrip 25.7 2.5E+02 0.0054 26.2 7.0 60 185-247 141-218 (253)
108 COG1528 Ftn Ferritin-like prot 24.2 5.7E+02 0.012 23.6 10.8 105 115-230 35-141 (167)
109 PF13668 Ferritin_2: Ferritin- 24.1 2.4E+02 0.0053 23.7 6.0 29 200-228 35-63 (137)
110 KOG1248 Uncharacterized conser 23.7 4.2E+02 0.0092 31.3 9.3 103 202-329 826-928 (1176)
111 cd06102 citrate_synt_like_2 Ci 22.1 7.7E+02 0.017 24.3 12.1 119 120-278 85-207 (282)
112 PRK11414 colanic acid/biofilm 22.0 2.6E+02 0.0057 25.4 6.2 59 186-247 135-209 (221)
113 PF08855 DUF1825: Domain of un 21.7 99 0.0021 26.5 3.1 52 264-316 16-74 (108)
114 PRK09101 nrdB ribonucleotide-d 21.1 1.6E+02 0.0035 30.0 5.0 41 196-237 96-136 (376)
115 PF12902 Ferritin-like: Ferrit 20.8 1.8E+02 0.0038 27.7 4.9 48 182-230 7-55 (227)
116 PF07875 Coat_F: Coat F domain 20.2 3.7E+02 0.008 20.0 5.7 31 196-226 23-53 (64)
117 PF08158 NUC130_3NT: NUC130/3N 20.2 1.4E+02 0.0031 22.2 3.3 32 60-91 13-45 (52)
No 1
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=100.00 E-value=9e-131 Score=963.07 Aligned_cols=342 Identities=75% Similarity=1.228 Sum_probs=335.1
Q ss_pred hhcccccCCCChhHHHHHHhhHHHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 018588 9 IHRDVVTHSMAPEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGE 88 (353)
Q Consensus 9 ~~~~~~~~~~~~~~~evl~~le~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~ 88 (353)
.++.+++|+|+|+|+|||++|||||++||++||||++++|||||||||+ +|++|+++|++||+++++|||+++||||||
T Consensus 48 ~~~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~-~~~~F~~~v~~lr~~~~~Lpd~~~v~Lvgd 126 (390)
T PLN00179 48 EVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDP-ASEGFYDQVKELRERAAELPDDYFVVLVGD 126 (390)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCC-ccCChHHHHhhhhHhhcCCChhhhhhhhhc
Confidence 5668899999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhhcccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCC
Q 018588 89 MITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKF 168 (353)
Q Consensus 89 ~lTEd~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~ 168 (353)
|||||||||||++||++||++|++|+++++|++|+++|||||||||++||+||||||+|||+++|+++|++|++||+++.
T Consensus 127 miTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q~li~~G~d~~~ 206 (390)
T PLN00179 127 MITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKT 206 (390)
T ss_pred chhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhh
Q 018588 169 ENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKK 248 (353)
Q Consensus 169 ~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~ 248 (353)
+++||++|+|+||||+||+|||+||||+|+++|||+|++||++||+||+||+.||+++|+++||+|||++|.||++||++
T Consensus 207 ~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~tm~Aiadmm~~ 286 (390)
T PLN00179 207 ENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDGAVLAFADMMRK 286 (390)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCccCCCCCcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhh
Q 018588 249 RFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENK 328 (353)
Q Consensus 249 ~~~MP~~~m~d~~~~~lf~~~a~~a~~~GiY~~~~y~~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~ 328 (353)
+|+|||++|+||+|++||+||++++|++||||++||.+||++||++|+|++++|||+||++||||||+||+||+|++||+
T Consensus 287 ki~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l~~rirr~~era 366 (390)
T PLN00179 287 KITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGLPPRIRRLEERA 366 (390)
T ss_pred cCCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCC-CccccceeCCcccC
Q 018588 329 ALVDTAKKGGS-AVPFGWVFGQEIRI 353 (353)
Q Consensus 329 ~~~~~~~~~~~-~~~f~wi~~~~~~~ 353 (353)
+ +|++++++ .++|||||+|+|.|
T Consensus 367 ~--~~~~~~~~~~~~fsWi~~r~v~~ 390 (390)
T PLN00179 367 Q--DRAKKAKPPSIPFSWIFDREVRL 390 (390)
T ss_pred h--hHHhccCCCCCceeeecCCccCC
Confidence 9 89887644 78999999999975
No 2
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=100.00 E-value=4.6e-119 Score=875.59 Aligned_cols=330 Identities=55% Similarity=0.952 Sum_probs=291.4
Q ss_pred ChhHHHHHHhhHHHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhhhcccchhH
Q 018588 19 APEKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTY 98 (353)
Q Consensus 19 ~~~~~evl~~le~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~~lTEd~LPtY 98 (353)
||+++|||++|||||++||++||+|++++|||||||||+ +|+||..++++||++|++|||++++||+||||||||||||
T Consensus 1 ~~~~~evl~~Le~~v~~~~~~~l~~~~~~W~PhD~lP~~-~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPsY 79 (330)
T PF03405_consen 1 PPEKLEVLRELEPVVEENLLRHLKPVEKDWQPHDFLPWS-EGRNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPSY 79 (330)
T ss_dssp -GGGHHHHHHCHHHHHHHCHHHCH-CGGS--GGGGS-GC-CSTTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHhhCCCccccCCCC-ccccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhHH
Confidence 689999999999999999999999999999999999999 9999988899999999999999999999999999999999
Q ss_pred HHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHH
Q 018588 99 QTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVY 178 (353)
Q Consensus 99 ~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy 178 (353)
|++|+++||++|++|+++++|++|+++|||||||||++||+|||+||+|||+++|++++++++.||+++++++|+++|+|
T Consensus 80 ~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vY 159 (330)
T PF03405_consen 80 HRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGFDPGFESDPYLGFVY 159 (330)
T ss_dssp HHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH----S-TTHHHHHHHH
T ss_pred HHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987889999999
Q ss_pred HHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCccCC
Q 018588 179 TSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMY 258 (353)
Q Consensus 179 ~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~MP~~~m~ 258 (353)
+||||+||++||+|||++|+.+|||||++||++||+||+||+.||+++|+++|++|||++|.||++||+++|+|||+.|+
T Consensus 160 tsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~t~~Ai~~vm~~~f~MPg~~m~ 239 (330)
T PF03405_consen 160 TSFQERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDGTMLAIADVMRNKFRMPGHLMP 239 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH----TTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhccCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977999999999
Q ss_pred CCCcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhhhcCC
Q 018588 259 DGQDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKKGG 338 (353)
Q Consensus 259 d~~~~~lf~~~a~~a~~~GiY~~~~y~~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~~~~~~~~~~~ 338 (353)
||+++++|++|++++|++||||+++|.+||++||++|+|++++|||++|++||||||+||.|++||+||++ .|+++..
T Consensus 240 dg~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~--~~~~~~~ 317 (330)
T PF03405_consen 240 DGRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERAD--RRAARMA 317 (330)
T ss_dssp -SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTS--TTTSSS-
T ss_pred cCcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHH--HHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 7776654
Q ss_pred CCccccceeCCcc
Q 018588 339 SAVPFGWVFGQEI 351 (353)
Q Consensus 339 ~~~~f~wi~~~~~ 351 (353)
..++|||||||+|
T Consensus 318 ~~~~fswif~r~v 330 (330)
T PF03405_consen 318 KPVPFSWIFNREV 330 (330)
T ss_dssp -EEE-GGGTT-EE
T ss_pred CCCceeeecCCCC
Confidence 5789999999987
No 3
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=100.00 E-value=6.6e-101 Score=741.19 Aligned_cols=297 Identities=61% Similarity=1.033 Sum_probs=287.0
Q ss_pred hHHHHHHhhHHHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhhhcccchhHHH
Q 018588 21 EKVEIFRSLETWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQT 100 (353)
Q Consensus 21 ~~~evl~~le~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~~lTEd~LPtY~~ 100 (353)
.++|||++|||||++||+++|+|++++|||||||||| ++++|..++++|+++|++|||+++++|++|||||||||+||+
T Consensus 1 ~~~el~~~le~~~~~~~~~~~~~~~~~W~p~d~lP~~-~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~~ 79 (297)
T cd01050 1 TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPDS-ASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYHS 79 (297)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccHhhccCCcccCCCC-CCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHHH
Confidence 3789999999999999988889999999999999999 899998899999999999999999999999999999999999
Q ss_pred HhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHH
Q 018588 101 MLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTS 180 (353)
Q Consensus 101 ~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~ 180 (353)
+||++||++++ ++++|++|+++||+||||||++|++||++||+|||+++|++++++++.||+++.+++|+++|+|+|
T Consensus 80 ~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~~~~~~~~~~~~~~y~~ 156 (297)
T cd01050 80 MLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVYTS 156 (297)
T ss_pred HHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHH
Confidence 99999998765 679999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCccCCCC
Q 018588 181 FQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDG 260 (353)
Q Consensus 181 fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~MP~~~m~d~ 260 (353)
|||+||++||+|||++++ +|||||++||++||+||+||++||+++|+++|++||+++|.||++||+ +|+|||+.|.
T Consensus 157 fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~~~~Ai~~v~~-~~~MP~~~~~-- 232 (297)
T cd01050 157 FQELATRISHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDGAVLAFADMMR-KIVMPGHLMY-- 232 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH-hCCCChhhhh--
Confidence 999999999999999987 799999999999999999999999999999999999999999999998 5999999995
Q ss_pred CcchhhhhHHHHHHHhCCCChhcHHHHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhh
Q 018588 261 QDDKIFDHFSAVTQRLGVYTGHDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENK 328 (353)
Q Consensus 261 ~~~~lf~~~a~~a~~~GiY~~~~y~~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~ 328 (353)
.+|++|++++|++||||+.+|++||++++++|+|++++|||++|++||||||+||+|++|++||.
T Consensus 233 ---~~f~~~~~~~a~~gvY~~~~~~~V~~~~~~~w~v~~l~~l~~eg~~ar~~~~~l~~~~~~~~~r~ 297 (297)
T cd01050 233 ---PLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALPARLRRLAERA 297 (297)
T ss_pred ---hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 34889999999999999999999999999999999999999999999999999999999999874
No 4
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.84 E-value=6.3e-08 Score=76.94 Aligned_cols=126 Identities=20% Similarity=0.201 Sum_probs=90.9
Q ss_pred HHHHhhhc-ccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhC
Q 018588 85 LVGEMITE-EALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSG 163 (353)
Q Consensus 85 lv~~~lTE-d~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G 163 (353)
|...+..| .+.-.|........ ++.+..+...|..||.+|.+.|.+++.--|...+..... ....+
T Consensus 3 L~~~~~~E~~a~~~y~~~~~~~~---------~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~----~~~~~ 69 (130)
T cd00657 3 LNDALAGEYAAIIAYGQLAARAP---------DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH----LLAAY 69 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHhc
Confidence 33444445 33444554444332 678899999999999999999999996655443333222 11222
Q ss_pred CCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHH
Q 018588 164 MDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 226 (353)
Q Consensus 164 ~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~i 226 (353)
.......++...+.+....|..+...|.++.+. ..||.+++++..|+.||.+|..+++.+
T Consensus 70 ~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~---~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 70 ALPKTSDDPAEALRAALEVEARAIAAYRELIEQ---ADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222333578889999999999999999997765 559999999999999999999999875
No 5
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=98.06 E-value=0.00011 Score=71.17 Aligned_cols=216 Identities=17% Similarity=0.171 Sum_probs=125.7
Q ss_pred hhHHHHHH-hhHHHHHHhh---Hhccc-----------CccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHH
Q 018588 20 PEKVEIFR-SLETWAEQNV---LIHLK-----------PVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVA 84 (353)
Q Consensus 20 ~~~~evl~-~le~~v~~~~---~~~l~-----------~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~ 84 (353)
++..++++ -++.|++..- ++.+. +..+.|.|.+++|-- .-+-|.....+-+.+-.. -...-.
T Consensus 6 ~~~~~~~~rL~~~~~~r~~v~~dp~~didWd~~~~~~~~~~~~~~p~~~~pl~-gtp~~~~l~~~~r~~l~~--~~~~~~ 82 (304)
T PF11583_consen 6 PDREETLQRLLESWARRSYVRSDPETDIDWDAPDDEDFDPDRPWLPPELLPLY-GTPLWERLSEEQRIELLR--HEWANY 82 (304)
T ss_dssp ----HHHHHHHHHHHHH-HHHHSTTGG------GGTT--TTS-SS-GGGSTTT-T-HHHHTS-HHHHHHHHH--HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccCCchhhhhhhhhhcccCCCcccCCCcccCccC-CCHHHHhCCHHHHHHHHH--HHHHHH
Confidence 44455554 4458888888 66631 346777777777764 333333211111111111 233344
Q ss_pred HHHHhhhcccch--hHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCC-----ChHHhH-HHH
Q 018588 85 LVGEMITEEALP--TYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRV-----DMKQIE-KSI 156 (353)
Q Consensus 85 lv~~~lTEd~LP--tY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~v-----Dp~~lE-~~~ 156 (353)
+...+..|..+- .....+...++.. .+.+...+..+-..||++|...-.+|+-.+|+- .|.... ...
T Consensus 83 ~~~~i~~E~~l~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~ 157 (304)
T PF11583_consen 83 LSQGIWFEQGLVNPAFRMLARDRFPSD-----PDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRL 157 (304)
T ss_dssp HHHHHHHHHHTHHHHHHHHHTT-STTT-----T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHH
Confidence 445566676665 4444554455431 145667788899999999999999999777711 111211 112
Q ss_pred HHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 157 QYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 157 ~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
...+.....+. ..+...++..++-|.....+.+.+.+ ...-.|+++++++....||+||..|+..+++.....-+.
T Consensus 158 ~~~l~~~~~~~--~~~~~~~~~~lv~Ee~i~~~~~~~~~--D~~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~ 233 (304)
T PF11583_consen 158 LRRLARLLPPW--ERGLLFFAFALVAEEIIDAYQREIAR--DETIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSP 233 (304)
T ss_dssp HHHHHTS-SHH--HHHHHHHHHHHHHHHSBHHHHHHHHT---SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H
T ss_pred HHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 22233222221 12456888888888887776665433 123379999999999999999999999999999999988
Q ss_pred hHHHHHHHHHh
Q 018588 237 DTILALAGMMK 247 (353)
Q Consensus 237 ~a~~Ai~~~m~ 247 (353)
.....++..+.
T Consensus 234 ~~r~~~~~~l~ 244 (304)
T PF11583_consen 234 AERRALAELLP 244 (304)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777777665
No 6
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=97.44 E-value=0.0057 Score=58.65 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=108.0
Q ss_pred cCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhhhcccchhHHHHhhhhcCCccccCCCchhHHHHHh
Q 018588 45 DKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIR 124 (353)
Q Consensus 45 ~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~~lTEd~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~ 124 (353)
...|.|.+ +|.+.+-.+|.....+ .+..+...+-....++.++-+++...-... . ..++...+..
T Consensus 20 ~~~W~p~e-i~~~~D~~~~~~l~~~---er~~~~~~la~~~~~d~~v~~~~~~~~~~~---~--------~~~e~~~~~~ 84 (288)
T cd01049 20 ANFWTPEE-IDLSKDLKDWEKLTEA---ERHFIKRVLAFLAALDSIVGENLVELFSRH---V--------QIPEARAFYG 84 (288)
T ss_pred HcCCChhh-cchhhhHHHHhHCCHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---c--------ChHHHHHHHH
Confidence 36899999 7776333334211000 011111222222334455555544333221 1 2567788899
Q ss_pred hchhhhhhhhHHHHhHHHHhcCCCh--HH----------hHHHHHHHHHhCCCCCC---CCCchhhHHHHHHhhhhhH-H
Q 018588 125 AWTAEENRHGDLLNKYLYLSGRVDM--KQ----------IEKSIQYLIRSGMDPKF---ENNPYNGFVYTSFQERATF-I 188 (353)
Q Consensus 125 ~WtAEEnRHg~aL~~YL~~sg~vDp--~~----------lE~~~~~~i~~G~~~~~---~~~p~~~~vy~~fqE~AT~-i 188 (353)
.+.++|+.|+.+-..++-.-+. |+ .. +.+ +...+...|+... ..+.+..++.-.+.|..-+ .
T Consensus 85 ~q~~~E~iH~e~Ys~il~~l~~-~~e~~~~~~~~~~~~~l~~-k~~~~~~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~s 162 (288)
T cd01049 85 FQAFMENIHSESYSYILDTLGK-DEERDELFEAIETDPALKK-KADWILRWYDNLDDNTKESFAERLVAFAILEGIFFYS 162 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHhcCHHHHH-HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988843332 21 11 111 1122222333221 1234555554477787665 4
Q ss_pred HHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh----hHHHHHHHHHh
Q 018588 189 SHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD----DTILALAGMMK 247 (353)
Q Consensus 189 ~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd----~a~~Ai~~~m~ 247 (353)
++..+-.+++..-=|-++++...|++||.+|..|...+++.++...|+ .....+.++++
T Consensus 163 ~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~ 225 (288)
T cd01049 163 GFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIK 225 (288)
T ss_pred HHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHH
Confidence 566555565444458899999999999999999999999999998875 33444444443
No 7
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=97.08 E-value=0.0076 Score=51.73 Aligned_cols=99 Identities=21% Similarity=0.119 Sum_probs=78.4
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHH-hcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhh-hHHHHhhH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERA-TFISHGNT 193 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~-sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~A-T~i~y~n~ 193 (353)
....+.|...=..||..|+..+.+|+.. .|.++ . . +....+....|-..--.|.. +...|.++
T Consensus 32 ~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~------------~-~--~~~~~~~~~~l~~~~~~E~~e~~~~y~~~ 96 (134)
T cd01041 32 YEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT------------G-P--PIGIGDTLENLKAAIAGETYEYTEMYPEF 96 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------C-C--CCCcchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5678899998899999999999999943 33333 0 0 11113556677777778874 66778899
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 194 arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
.++|...||...+.+...|+.||..|...|.+.++.
T Consensus 97 ~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 97 AEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988765
No 8
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.01 E-value=0.014 Score=50.86 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=86.5
Q ss_pred CchhHHHHHhhchhhhhhhhHHHHhHHHHhc-CCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhH
Q 018588 115 SLTSWATWIRAWTAEENRHGDLLNKYLYLSG-RVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193 (353)
Q Consensus 115 ~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg-~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ 193 (353)
+.+.++.|.+....||-.|+..+-+|+..-| .++...+... .. ...++...+-...-.|+.....|.++
T Consensus 33 ~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~---------~~-~~~~~~~~l~~al~~E~~~~~~~~~l 102 (156)
T cd01055 33 GLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAP---------PS-EFESLLEVFEAALEHEQKVTESINNL 102 (156)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCC---------Cc-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999999999999999995533 4443332210 00 11366777777777888888899999
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhh
Q 018588 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 233 (353)
Q Consensus 194 arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~ 233 (353)
.++|...|||+...++..+..||..|...+..++..+-..
T Consensus 103 ~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~~~ 142 (156)
T cd01055 103 VDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLKLA 142 (156)
T ss_pred HHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999866544
No 9
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=96.94 E-value=0.014 Score=48.29 Aligned_cols=122 Identities=12% Similarity=0.066 Sum_probs=79.9
Q ss_pred ccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhc-CCChHHhHHH-HHHHHHhCC---CCC
Q 018588 93 EALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSG-RVDMKQIEKS-IQYLIRSGM---DPK 167 (353)
Q Consensus 93 d~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg-~vDp~~lE~~-~~~~i~~G~---~~~ 167 (353)
.+.-.|......+. +..-..+...=..||.+|...|...+.-.+ .-.|...... ........+ ...
T Consensus 12 ~~~~~Y~~~a~~~~---------~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (139)
T cd01045 12 EAAEFYLELAEKAK---------DPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALE 82 (139)
T ss_pred HHHHHHHHHHhHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHH
Confidence 44455665554442 446678888888999999999999985543 1122221111 111111000 001
Q ss_pred CCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHH
Q 018588 168 FENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 226 (353)
Q Consensus 168 ~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~i 226 (353)
...++...+-...--|......|.++++ ..+||..+.++.+|+.||.+|...+.+.
T Consensus 83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~---~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 83 SLMDPLEALRLAIEIEKDAIEFYEELAE---KAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235566777777788888889988555 5889999999999999999999988764
No 10
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=96.88 E-value=0.023 Score=54.65 Aligned_cols=114 Identities=19% Similarity=0.115 Sum_probs=76.8
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHH-------------hHHHHHHHHHhCCCCCCCCCchhhHHHHHHh
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ-------------IEKSIQYLIRSGMDPKFENNPYNGFVYTSFQ 182 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~-------------lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fq 182 (353)
.++...+...+.++|+.|+.+-...+-.-+ -|+.. +.+ +...+..-|+.. .+....+++-.+.
T Consensus 84 ~~E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~~~~~~~~~~~~~~l~~-k~~~i~~~~~~~--~~~~~~lv~~~~l 159 (281)
T PF00268_consen 84 SPEIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKERDEIFDWVEEDPELQK-KLDWIEKWYEDN--DSLAEKLVASVIL 159 (281)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHSHHHHH-HHHHHHHHHCSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhhhHHhh-HHHHHHhhchhh--hhHHHHHHHHHHH
Confidence 567888999999999999999888884444 34432 111 223344444432 1223356666777
Q ss_pred hhhhHHH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhh
Q 018588 183 ERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 233 (353)
Q Consensus 183 E~AT~i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~ 233 (353)
|..-+.+ +.-+.-+++.-.=|-+.++...|.+||.+|..|...+++.+.+.
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e 211 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEE 211 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8763322 33333344333478899999999999999999999999998865
No 11
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=96.80 E-value=0.035 Score=53.60 Aligned_cols=126 Identities=15% Similarity=0.164 Sum_probs=73.4
Q ss_pred hhHHHHHhhchhhhhhhhHHHHhHHHHhcCC-ChHHh----HHHH--HHHHHhCCCCCCCCCchh----hHHHHHHhhhh
Q 018588 117 TSWATWIRAWTAEENRHGDLLNKYLYLSGRV-DMKQI----EKSI--QYLIRSGMDPKFENNPYN----GFVYTSFQERA 185 (353)
Q Consensus 117 ~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~v-Dp~~l----E~~~--~~~i~~G~~~~~~~~p~~----~~vy~~fqE~A 185 (353)
.+...+...=..+|++|+.+-..++-.=+.- |.... +... +.......+....+++.. .++|..+.|-.
T Consensus 78 ~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGi 157 (280)
T cd07911 78 LEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGV 157 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH
Confidence 3445667788899999999999998432221 10111 1111 111111111111223322 34566678874
Q ss_pred hHHH-----HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 018588 186 TFIS-----HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMM 246 (353)
Q Consensus 186 T~i~-----y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m 246 (353)
-+-+ +..+++ .---|-+.++...|.+||.+|-.|...+++.+...+|+ ....+.+.+
T Consensus 158 lf~sgF~~~~~~l~~---~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~-~~~~~~e~~ 219 (280)
T cd07911 158 LAETGYYAWRTICEK---RGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDA-NWDVFEERM 219 (280)
T ss_pred HHHHHHHHHHHHHhh---cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChh-HHHHHHHHH
Confidence 4332 222322 22288899999999999999999999999999988873 233344444
No 12
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.76 E-value=0.012 Score=51.57 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=70.4
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCC---CCCCCchhhHHHHHHhhhhhHHHHhh
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDP---KFENNPYNGFVYTSFQERATFISHGN 192 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~---~~~~~p~~~~vy~~fqE~AT~i~y~n 192 (353)
+.....-+..=..||-+|...|.+.+.--|. +|........ ....|.+ ....++...+-...-.|..+-.+|.+
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg-~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~ 122 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGG-DPRYRSSSSD--KFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKR 122 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchhhccc--cCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777788999999999998733222 3332111100 0000111 11124455666666779999999999
Q ss_pred HHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHH
Q 018588 193 TARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 226 (353)
Q Consensus 193 ~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~i 226 (353)
+++ ..+||..+.++..|+.||..|...+.++
T Consensus 123 ~~~---~~~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 123 QAE---TIKDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHH---HcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666 5789999999999999999999988765
No 13
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=96.72 E-value=0.021 Score=48.79 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=74.7
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 195 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ar 195 (353)
.+..+.|.+.=..||..|+..+.+++ +.+. .|....|-...-.|..-...|.++.+
T Consensus 32 ~~~~A~~f~~~a~eE~~HA~~~~~~l---~~i~---------------------~~~~~~le~a~~~E~~~~~~~~~~~~ 87 (123)
T cd01046 32 YPEVAEELKRIAMEEAEHAARFAELL---GKVS---------------------EDTKENLEMMLEGEAGANEGKKDAAT 87 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---hcCc---------------------ccHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 56788899888899999999999876 2221 25555666666666655566889999
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
.|..-||...+..+..|+.+|..|...|.+.+++++
T Consensus 88 ~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~~ 123 (123)
T cd01046 88 EAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERYF 123 (123)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998763
No 14
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.63 E-value=0.0017 Score=53.85 Aligned_cols=101 Identities=22% Similarity=0.309 Sum_probs=63.6
Q ss_pred HHHHHhhchhhhhhhhHHHHhHHHH-hcCCChHHhHHHHHHHHHhCCCCCCCC---CchhhHHHHHHh-hhhhHHHHhhH
Q 018588 119 WATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKSIQYLIRSGMDPKFEN---NPYNGFVYTSFQ-ERATFISHGNT 193 (353)
Q Consensus 119 w~~w~~~WtAEEnRHg~aL~~YL~~-sg~vDp~~lE~~~~~~i~~G~~~~~~~---~p~~~~vy~~fq-E~AT~i~y~n~ 193 (353)
-..-...=..+|.+|...|.+-+.- .+..+|..... .+...+.+.... ..+...+..+.+ |.-+..+|..+
T Consensus 31 ~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~ 106 (137)
T PF02915_consen 31 LKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEE----KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAEL 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCC----CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhh----hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677899999999988832 12223321000 011111111111 113344444444 77777888885
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHH
Q 018588 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 226 (353)
Q Consensus 194 arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~i 226 (353)
++ ..+||-.++++..|+.||.+|...|.++
T Consensus 107 a~---~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 107 AR---KAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HH---HTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 6899999999999999999999999875
No 15
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=96.51 E-value=0.058 Score=53.17 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=70.7
Q ss_pred hhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHH------HHHHH-----HhCCCCCCCCCch---hhHH-HHHH
Q 018588 117 TSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKS------IQYLI-----RSGMDPKFENNPY---NGFV-YTSF 181 (353)
Q Consensus 117 ~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~------~~~~i-----~~G~~~~~~~~p~---~~~v-y~~f 181 (353)
++-..+...=..+|++|+.+-..|+-.-|.-+. +... .+..+ ....+....++|. ..++ |..+
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~ 172 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTED--LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHV 172 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 344566777788999999999999854343321 1111 11110 1001111112322 2333 6667
Q ss_pred hhhhhHHH-----HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 182 QERATFIS-----HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 182 qE~AT~i~-----y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
.|-.-+.+ ..++++ .---|-++++...|.+||.+|-.|...+++.+...+|.
T Consensus 173 iEGi~f~sgF~~~~~~l~~---~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~ 229 (311)
T PRK08326 173 VEGVLAETGYYAWRKICVT---RGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDS 229 (311)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 88644222 123333 23378899999999999999999999999999988885
No 16
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=96.47 E-value=0.058 Score=53.13 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=101.3
Q ss_pred HHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHH--------HHHhhhccc-chhHHHH
Q 018588 31 TWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVAL--------VGEMITEEA-LPTYQTM 101 (353)
Q Consensus 31 ~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~l--------v~~~lTEd~-LPtY~~~ 101 (353)
||+-+.-..+.+ ..|.|.+ +|-+. .+.+|. +||++-.-++ .++.++-++ +|.+...
T Consensus 20 ~~~~~~y~~~~~---~fW~peE-i~~s~-------D~~dw~----~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~ 84 (324)
T PRK09614 20 PWDYEAWKRLTA---NFWLPEE-VPLSN-------DLKDWK----KLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPD 84 (324)
T ss_pred HHHHHHHHHHHh---CCCCCcc-ccccc-------hHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 444444444433 7899999 56542 223442 4555433322 234444444 4444333
Q ss_pred hhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHH--hHH---------HHHHHHHhCCCCCCCC
Q 018588 102 LNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ--IEK---------SIQYLIRSGMDPKFEN 170 (353)
Q Consensus 102 L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~--lE~---------~~~~~i~~G~~~~~~~ 170 (353)
+ ..++...+...+.++|+.|+.+-...+-.-+ .+++. +.. .+...+..-|+.....
T Consensus 85 ~------------~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~-~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~ 151 (324)
T PRK09614 85 I------------TTPEEEAVLANIAFMEAVHAKSYSYIFSTLC-SPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKK 151 (324)
T ss_pred C------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 2 2467788999999999999999777764322 12222 111 0112222233321111
Q ss_pred CchhhHHHHHHhhhhhHHH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhH
Q 018588 171 NPYNGFVYTSFQERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDT 238 (353)
Q Consensus 171 ~p~~~~vy~~fqE~AT~i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a 238 (353)
.-...+++..+.|..-+-+ ..-+--+++.--=|-++++...|++||.+|..|...+++.++...|+..
T Consensus 152 ~~~~~~~~~~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~ 220 (324)
T PRK09614 152 ILRKAAVASVFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELE 220 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhh
Confidence 3344556666666543322 1111123322335668899999999999999999999999998887643
No 17
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.42 E-value=0.047 Score=48.90 Aligned_cols=103 Identities=12% Similarity=0.074 Sum_probs=69.4
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 195 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ar 195 (353)
++....-+..=..||-.|-..|..=+..=|. |+.... -+++|-... .++..-+.+..--|.....-|.++.+
T Consensus 52 ~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~-~~~g~p------w~~~yv~~~-~d~~~~L~~ni~aE~~Ai~~Y~~l~~ 123 (156)
T cd01051 52 DPKYRDLLLDIGTEELSHLEMVATLIAMLLK-DSQGVP------WTAAYIQSS-GNLVADLRSNIAAESRARLTYERLYE 123 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCc------CCCcccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566888888777766532121 111100 012342222 36666777777888888888988555
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
.+.||.+..++.+|..||..|..-|.+.++.
T Consensus 124 ---~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 124 ---MTDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred ---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4779999999999999999999999998864
No 18
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.41 E-value=0.15 Score=43.95 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=83.6
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 195 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ar 195 (353)
.+....|...=..||.+|.+.+.+|+.--|. .|..- ..-.+....+....+-...-.|.-+...|+.+.+
T Consensus 36 ~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg-~p~~~---------~~~~~~~~~~~~~~l~~~l~~E~~~~~~y~~~~~ 105 (153)
T cd00907 36 LEKLAERFRKESIEEMKHADKLIERILFLEG-LPNLQ---------RLGKLRIGEDVPEMLENDLALEYEAIAALNEAIA 105 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCC---------cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888999999999999965443 23220 0001111124455666666778888888999999
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHH
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTIL 240 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~ 240 (353)
+|...+|+....++..|.+||..|..+|.+.++. ++..++++-.
T Consensus 106 ~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~-~~~~g~~~~~ 149 (153)
T cd00907 106 LCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDL-IDKMGLQNYL 149 (153)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCHHHHH
Confidence 8888999999999999999999999999999876 4444544443
No 19
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=96.38 E-value=0.07 Score=44.40 Aligned_cols=111 Identities=18% Similarity=0.223 Sum_probs=86.0
Q ss_pred CchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHH
Q 018588 115 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 194 (353)
Q Consensus 115 ~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~a 194 (353)
...+.+.+......||..|++.+.+|+.--|. .|..-...... +. .|....++...|...---|......+..+.
T Consensus 29 ~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg-~p~~~~~~~~~-~~---~~~~~~~~~~~l~~~l~~e~~~~~~~~~l~ 103 (142)
T PF00210_consen 29 NFPGLAKFFQDQAEEEREHADELAERILMLGG-KPSGSPVEIPE-IP---KPPEWTDPREALEAALEDEKEIIEEYRELI 103 (142)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSTSHHHHHH-HH---SSSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHhHHHHHHHHHHHHHHHHHHhcCCC-CCCCcHHHhhh-hh---ccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999966444 22221111111 11 122123777888888888999999999999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHH
Q 018588 195 RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 230 (353)
Q Consensus 195 rla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~ 230 (353)
++|...+||.+..++..+-.+|..|..+...++..+
T Consensus 104 ~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l 139 (142)
T PF00210_consen 104 KLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNL 139 (142)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888999999999999999999999999988764
No 20
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.12 E-value=0.017 Score=47.78 Aligned_cols=54 Identities=20% Similarity=0.216 Sum_probs=46.9
Q ss_pred HHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHH
Q 018588 176 FVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 230 (353)
Q Consensus 176 ~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~ 230 (353)
+-..+-.|.....+|..+++.++..| |.+++++..||.||.+|..++.++.+.+
T Consensus 3 L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 3 LEMAIKMELEAAKFYRELAEKAKDEG-PELKELFRRLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556688999999999888876555 9999999999999999999999999875
No 21
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=95.51 E-value=0.72 Score=46.62 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=98.7
Q ss_pred HHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHH--------HHHhhhcccch-hHHHH
Q 018588 31 TWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVAL--------VGEMITEEALP-TYQTM 101 (353)
Q Consensus 31 ~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~l--------v~~~lTEd~LP-tY~~~ 101 (353)
||+-+.-..+ ....|.|.+ +|-+ ..+.+|+ ...+|+++-.-++ .+++++-+|+. .+.
T Consensus 57 ~~~~~~y~~~---~~nfW~peE-I~ls-------~Di~dw~-~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~-- 122 (369)
T PRK07209 57 KWAWEKYLAG---CANHWMPQE-VNMS-------RDIALWK-SPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIY-- 122 (369)
T ss_pred HHHHHHHHHH---HhCCCCchh-cCcc-------ccHHHHc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--
Confidence 5555544333 347899999 5544 2234552 1125666544333 23444444542 222
Q ss_pred hhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHH----------HHHH---HHh----CC
Q 018588 102 LNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKS----------IQYL---IRS----GM 164 (353)
Q Consensus 102 L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~----------~~~~---i~~----G~ 164 (353)
..+ ..++...++..+.++|+.|+.+-...+-.-+ .|+..+... .... +.. ++
T Consensus 123 --~~i--------~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~ 191 (369)
T PRK07209 123 --RHI--------TNPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNF 191 (369)
T ss_pred --HHc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Confidence 222 2567778999999999999998665553222 344432211 1111 111 11
Q ss_pred CCCCC---CCchhhHH-HHHHhhhhhHHH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 165 DPKFE---NNPYNGFV-YTSFQERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 165 ~~~~~---~~p~~~~v-y~~fqE~AT~i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
+.... .+.+..++ +.+|.|-.-+-+ ...+--+++.--=|-++++...|++||.+|..|+..+++.+....|+
T Consensus 192 ~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~ 268 (369)
T PRK07209 192 KTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPH 268 (369)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 11110 12344554 355666543321 11111122222356688999999999999999999999999887774
No 22
>PRK10635 bacterioferritin; Provisional
Probab=95.45 E-value=0.32 Score=43.65 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=81.2
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHH-hcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYL-SGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 194 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~-sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~a 194 (353)
...++.|...=..||-+|++.|-+++.. -|..+...+ ....++ .++...|-..--.|+-+--.|+...
T Consensus 37 ~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~---------~~~~~g--~~v~eml~~dl~~E~~ai~~y~e~i 105 (158)
T PRK10635 37 LMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDL---------GKLNIG--EDVEEMLRSDLRLELEGAKDLREAI 105 (158)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC---------CCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777764488999999999999944 343344332 122233 4777788888888998889999999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 195 RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 195 rla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
++|...+|++-++++..|-.||..|...+.+.++.
T Consensus 106 ~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~ 140 (158)
T PRK10635 106 AYADSVHDYVSRDMMIEILADEEGHIDWLETELDL 140 (158)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988999999999999999999999999888764
No 23
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.36 Score=44.19 Aligned_cols=134 Identities=17% Similarity=0.094 Sum_probs=91.0
Q ss_pred HHhhhc-ccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHH-hcCC-ChHHhHHHHHH-HHHh
Q 018588 87 GEMITE-EALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYL-SGRV-DMKQIEKSIQY-LIRS 162 (353)
Q Consensus 87 ~~~lTE-d~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~-sg~v-Dp~~lE~~~~~-~i~~ 162 (353)
.+.-.| ++.=-|. .++.... +.....-+..=..||-+|-+.+.+.++- ++.- .-...+..... .+..
T Consensus 31 ~Ai~~E~eA~~fY~-~lae~~~--------~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (176)
T COG1633 31 IAIRGELEAIKFYE-ELAERIE--------DEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEY 101 (176)
T ss_pred HHHHHHHHHHHHHH-HHHHhcC--------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccc
Confidence 333345 4444454 4444432 4466777788889999999999998843 2221 11111112222 2233
Q ss_pred CCC---CCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh
Q 018588 163 GMD---PKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 232 (353)
Q Consensus 163 G~~---~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le 232 (353)
+.. .....+....+-+..++|+.|-.+|--+.. ...++..+.+...||.||..|+..+....+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~---~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 102 LQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLD---ELVNEEAKKLFKTIADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred cCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333 222346778999999999999999987444 6889999999999999999999999999887654
No 24
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=95.09 E-value=0.47 Score=47.15 Aligned_cols=175 Identities=14% Similarity=0.019 Sum_probs=96.4
Q ss_pred HHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHH--------HHhhhcccc-hhHHHH
Q 018588 31 TWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALV--------GEMITEEAL-PTYQTM 101 (353)
Q Consensus 31 ~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv--------~~~lTEd~L-PtY~~~ 101 (353)
||+-+.-..+.+ ..|.|.+ +|-+ ..+.+|+ +|+++-.-++. ++.++-.++ +.+...
T Consensus 30 ~~~~~ly~~~~~---~fW~peE-i~~s-------~D~~dw~----~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~ 94 (330)
T PTZ00211 30 PDIWRMYKKAEA---SFWTAEE-IDLG-------NDLKDWE----KLNDGERHFIKHVLAFFAASDGIVLENLAQRFMRE 94 (330)
T ss_pred HHHHHHHHHHHH---cCCChhh-cchh-------hhHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554433 6899999 5544 2234453 56665444433 233333333 222211
Q ss_pred hhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHh---HH----------HHHHHHHhCCCCCC
Q 018588 102 LNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQI---EK----------SIQYLIRSGMDPKF 168 (353)
Q Consensus 102 L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~l---E~----------~~~~~i~~G~~~~~ 168 (353)
+ ..++...+...+.+.|+.|+.+-.-.+-.-+ -|+... .. ..+ .+..-++ .
T Consensus 95 ~------------~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~-~~~~~~~~~f~~~~~~p~i~~K~~-~~~~~~~--~ 158 (330)
T PTZ00211 95 V------------QVPEARCFYGFQIAMENIHSETYSLLIDTYI-TDEEEKDRLFHAIETIPAIKKKAE-WAAKWIN--S 158 (330)
T ss_pred C------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCHHHHHHHH-HHHHHHh--c
Confidence 1 2456778999999999999987554432111 133321 11 111 1221222 1
Q ss_pred CCCchhhHHHHHHhhhhhHHH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 169 ENNPYNGFVYTSFQERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 169 ~~~p~~~~vy~~fqE~AT~i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
..+++..++.-++.|..-+.+ +..+--+++.--=|-++++...|++||.+|..|...++..+++.-|.
T Consensus 159 ~~~~~~~lv~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~ 227 (330)
T PTZ00211 159 SNSFAERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPR 227 (330)
T ss_pred chHHHHHHHHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCH
Confidence 235566666555666543321 22222233222356688999999999999999999999999865553
No 25
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=94.87 E-value=0.6 Score=39.98 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=74.6
Q ss_pred CchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCC----CCCCchhhHHHHHHhhhhhHHHH
Q 018588 115 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPK----FENNPYNGFVYTSFQERATFISH 190 (353)
Q Consensus 115 ~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~----~~~~p~~~~vy~~fqE~AT~i~y 190 (353)
.+.....|+..=..||..|.+.+..++..-|.. |..-- ..+...+|+.+. ...+....+-..--.|......|
T Consensus 36 ~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~-p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~ 112 (148)
T cd01052 36 EGEGIKEELEEAAEEELNHAELLAERIYELGGT-PPRDP--KDWYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVY 112 (148)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCh--HHHHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 466788888888899999999999999665543 33211 112222222221 11233344444445677777778
Q ss_pred hhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHH
Q 018588 191 GNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKI 226 (353)
Q Consensus 191 ~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~i 226 (353)
+++-++|.. +|++...++..|-+||..|...|..+
T Consensus 113 ~~~~~~a~~-~D~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 113 KELCDMTHG-KDPVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred HHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887887765 89999999999999999999998875
No 26
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=94.83 E-value=1.4 Score=43.79 Aligned_cols=112 Identities=9% Similarity=-0.069 Sum_probs=65.5
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHH--hHHH---------HHHHHHhCCCCCCCCCchhhHHHHHHhhh
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQ--IEKS---------IQYLIRSGMDPKFENNPYNGFVYTSFQER 184 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~--lE~~---------~~~~i~~G~~~~~~~~p~~~~vy~~fqE~ 184 (353)
.++-..+...+..+|+.|+.+-..-+-.=+. +++. +... +...+..-|+. .+.+..++...+.|-
T Consensus 87 ~~e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~---~~~~~~~v~~~~lEg 162 (322)
T PRK13967 87 TPHEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRG---DDALKRKASSVMLES 162 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHH
Confidence 4556789999999999999986555521111 1111 1111 11223333432 255666676667776
Q ss_pred hhH-HHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 185 ATF-ISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 185 AT~-i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
.-+ ++....--+++.--=|-++++...|++||..|..|....+.+.+
T Consensus 163 i~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 163 FLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 431 11111112222233566899999999999999999998664444
No 27
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=94.80 E-value=1.2 Score=45.10 Aligned_cols=183 Identities=15% Similarity=0.128 Sum_probs=108.4
Q ss_pred HHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHH--------Hhhhcccchh-HHHH
Q 018588 31 TWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVG--------EMITEEALPT-YQTM 101 (353)
Q Consensus 31 ~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~--------~~lTEd~LPt-Y~~~ 101 (353)
+|+.+.-.+.. ..-|-|.+ ||-+.+-. +|+ +|+++=..++.. +.+.=.+++- +-..
T Consensus 35 ~~~~~~y~~~~---~nFW~Pee-I~ls~D~~-------dw~----~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~~~~~~ 99 (348)
T COG0208 35 PWALELYKKLT---ANFWLPEE-IDLSNDIK-------DWK----KLSDDEKDLIIRVLAFLTLLDSIQANNGVPALSPL 99 (348)
T ss_pred HHHHHHHHHHH---hcCCCchh-cCccccHH-------HHH----hCCHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 56666666553 48999999 88872222 444 677665444332 2222222221 2211
Q ss_pred hhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHH-HHhcCCChHHhH-H---------HHHHHHHhCCCCCCCC
Q 018588 102 LNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYL-YLSGRVDMKQIE-K---------SIQYLIRSGMDPKFEN 170 (353)
Q Consensus 102 L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL-~~sg~vDp~~lE-~---------~~~~~i~~G~~~~~~~ 170 (353)
+ ..+.-..|+..|..+|+-|+..=.--+ .+..--+...+- . .+..-|...|+- ...
T Consensus 100 v------------~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k~~~i~~~y~~-~~~ 166 (348)
T COG0208 100 V------------TTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEKAEIILRYYDD-LGD 166 (348)
T ss_pred c------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHHHHHHHHHHHHh-ccC
Confidence 1 245668899999999999998743322 110101111100 0 022233444443 234
Q ss_pred Cc--------hhhHHHHHHhhhhh----HHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhH
Q 018588 171 NP--------YNGFVYTSFQERAT----FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDT 238 (353)
Q Consensus 171 ~p--------~~~~vy~~fqE~AT----~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a 238 (353)
+| +...+|.++.|--- +.+.-++++. --=|-.++|.+.|.+||.+|-.|+..++.+++...|+.-
T Consensus 167 ~~~~~~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r---~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~ 243 (348)
T COG0208 167 DPDDPLEEFLLKLVVASVILEGILFYSGFAYPLYLARR---GKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELW 243 (348)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhh
Confidence 55 77888888888532 4445555553 335678999999999999999999999999999999853
Q ss_pred HHHHHH
Q 018588 239 ILALAG 244 (353)
Q Consensus 239 ~~Ai~~ 244 (353)
-..+.+
T Consensus 244 t~e~~~ 249 (348)
T COG0208 244 TAELKD 249 (348)
T ss_pred hHHHHH
Confidence 333333
No 28
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.67 E-value=0.68 Score=47.42 Aligned_cols=179 Identities=12% Similarity=0.151 Sum_probs=97.0
Q ss_pred HHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHH--------Hhhhcccc-hhHHHH
Q 018588 31 TWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVG--------EMITEEAL-PTYQTM 101 (353)
Q Consensus 31 ~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~--------~~lTEd~L-PtY~~~ 101 (353)
||+.+.-..+.+ .-|.|.+ +|-+ ..+.+|+. ++||++-.-++.. +.++-+++ +.+...
T Consensus 106 ~~~~~ly~~~~~---~fW~peE-i~ls-------~D~~dw~~--~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~ 172 (410)
T PRK12759 106 PWAVDLTVKHEK---AHWIEDE-IDLS-------EDVTDWKN--GKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPL 172 (410)
T ss_pred HHHHHHHHHHHH---cCCCccc-cchh-------hhHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 455444433322 5787777 5543 23445641 3677775554432 23222222 232222
Q ss_pred hhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHH--------HHHHhCCCCCCCCCch
Q 018588 102 LNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQ--------YLIRSGMDPKFENNPY 173 (353)
Q Consensus 102 L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~--------~~i~~G~~~~~~~~p~ 173 (353)
+ ..++-..+...|+++|+-|+.+-...+-.=+. +.+......+ ..+.. ..+.....-+
T Consensus 173 ~------------~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~-~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~ 238 (410)
T PRK12759 173 F------------KNNEIRNMLGSFAAREGIHQRAYALLNDTLGL-PDSEYHAFLEYKAMTDKIDFMMD-ADPTTRRGLG 238 (410)
T ss_pred c------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhHHHHHHHHHHHh-cCcchHHHHH
Confidence 2 24567889999999999999986655522111 2222221111 11111 2222111223
Q ss_pred hhHHHHHHhhhhhHHH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 174 NGFVYTSFQERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 174 ~~~vy~~fqE~AT~i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
..++...|.|-.-+-+ ...+--+++.--=|-++++...|++||..|..|...+++.+++..|+
T Consensus 239 ~~lv~~~~lEgi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 302 (410)
T PRK12759 239 LCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPY 302 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 4566666677632211 11111122222256788999999999999999999999999987775
No 29
>PF13668 Ferritin_2: Ferritin-like domain
Probab=94.55 E-value=0.37 Score=41.16 Aligned_cols=98 Identities=18% Similarity=0.121 Sum_probs=66.1
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCC--ChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRV--DMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~v--Dp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ 193 (353)
++.....+..=...|..|-..|++-+. .++. .|..-. .+++.. ++...+.....-|..-...|...
T Consensus 37 ~~~~~~~~~~i~~~E~~H~~~l~~~l~-g~~~~~~~~~~~---------~~~~~~--~~~~~L~~A~~~E~~~~~~Y~g~ 104 (137)
T PF13668_consen 37 DPEVRDLFQEIADQEQGHVDFLQAALE-GGRPVPPPAYDF---------PFDPFT--DDASFLRLAYTLEDVGVSAYKGA 104 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCcccc---------ccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667778889999999999996 2121 221100 334442 44444444444566666666664
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 194 arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
+. ...+|.+++++..|++.|++|...++.++.
T Consensus 105 ~~---~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 105 AP---QIEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 477999999999999999999999998764
No 30
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=94.39 E-value=0.086 Score=44.81 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=40.0
Q ss_pred hhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHH
Q 018588 182 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 230 (353)
Q Consensus 182 qE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~ 230 (353)
-|.-...+|+++++ ...+|.+++++..||.+|..|+.+|.++.+..
T Consensus 9 ~E~~~~~~Y~~la~---~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 9 DEITEAAIYRKLAK---REKDPENREILLKLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46777889999666 47799999999999999999999999988764
No 31
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=94.22 E-value=1.7 Score=43.39 Aligned_cols=105 Identities=8% Similarity=-0.060 Sum_probs=58.9
Q ss_pred HHHHhhchhhhhhhhHH----HHhHH--------HHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhH
Q 018588 120 ATWIRAWTAEENRHGDL----LNKYL--------YLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATF 187 (353)
Q Consensus 120 ~~w~~~WtAEEnRHg~a----L~~YL--------~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~ 187 (353)
..+...+.++|+-|+.+ +..++ +-+-.-+|. +.+ +...+..-|+. .+++..+++..+.|-.-+
T Consensus 104 ~~~l~~q~~~E~IHs~sYs~il~tl~~~~~~~~~f~~~~~~p~-l~~-K~~~i~~~~~~---~~~~~~~va~~~lEGi~F 178 (335)
T PRK13965 104 QVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVVSTES-LQR-RARVLIPYYTG---DDPLKSKVAAAMMPGFLL 178 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCHH-HHH-HHHHHHHHHhc---CcHHHHHHHHHHHHHHHH
Confidence 66779999999999994 44432 000001111 111 11222333332 356777777677775433
Q ss_pred HH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 188 IS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 188 i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
-+ ...+--+++.--=|-++++...|++||..|..|-.-++..
T Consensus 179 ysgFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~ 221 (335)
T PRK13965 179 YGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQ 221 (335)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 22 1122223333335678999999999999999874444444
No 32
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=94.12 E-value=1.4 Score=38.77 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=79.8
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 195 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ar 195 (353)
-.+.+.|...=..||..|++-|..|+.--|. .|.. . .+. . +....++...|-..--.|......|+.+.+
T Consensus 37 ~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg-~p~~-~-----~i~-~--~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~ 106 (157)
T TIGR00754 37 LKELADHEYHESIDEMKHADEIIERILFLEG-LPNL-Q-----DLG-K--LRIGETVREMLEADLALELDVLNRLKEAIA 106 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCC-C-----cCC-C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778777778999999999999966554 3331 0 011 1 111245556666666678888888888888
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
+|...+|+....++..|.+||..|..++...++.+-
T Consensus 107 ~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~~ 142 (157)
T TIGR00754 107 YAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELID 142 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999887543
No 33
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=93.90 E-value=2.6 Score=41.94 Aligned_cols=180 Identities=13% Similarity=0.039 Sum_probs=98.2
Q ss_pred HHHHHhhHhcccCccCCCCCCCCCCCCCCccChHHHHHHHHHHhcCCCHHHHHHHHHHhhhcccchhHHHH-hh-hhcCC
Q 018588 31 TWAEQNVLIHLKPVDKSWQPTDFLPESETSEGFYEQVKELRERCKQLPAEHFVALVGEMITEEALPTYQTM-LN-TLDGV 108 (353)
Q Consensus 31 ~~v~~~~~~~l~~~~~~WqP~D~lP~~~~~~~F~~~~~~lr~~~~~Lpd~~~v~lv~~~lTEd~LPtY~~~-L~-~~~g~ 108 (353)
+|+...-.++. ..-|.|.+ +|-+ ..+.+|+ +||++-.-++...+--=-.+.+.+.. +. .+...
T Consensus 22 ~~~~~~~~~~~---~nfW~peE-i~l~-------~D~~dw~----~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~ 86 (324)
T PRK13966 22 EKDAEVWDRLT---GNFWLPEK-VPVS-------NDIPSWG----TLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPD 86 (324)
T ss_pred HHHHHHHHHHH---hCCCCccc-cCcc-------chHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Confidence 45554444443 47899998 6654 1234553 47776655544322111122333321 11 11110
Q ss_pred ccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChH-------------HhHHHHHHHHHhCCCCCCCCCchhh
Q 018588 109 RDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMK-------------QIEKSIQYLIRSGMDPKFENNPYNG 175 (353)
Q Consensus 109 ~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~-------------~lE~~~~~~i~~G~~~~~~~~p~~~ 175 (353)
...++-..+.+.|.++|+-|+.+-..-+-.= +++. .+.+ +...+..-|+. .+++..
T Consensus 87 -----~~~pe~~~~~~~q~~~E~IHsesYs~il~tl--~~~~~~~~~f~~~~~~~~l~~-K~~~i~~~~~~---~~~~~~ 155 (324)
T PRK13966 87 -----ALTPHEEAVLTNIAFMESVHAKSYSQIFSTL--CSTAEIDDAFRWSEENRNLQR-KAEIVLQYYRG---DEPLKR 155 (324)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHhcCHHHHH-HHHHHHHHhcC---ChHHHH
Confidence 1245558899999999999998744333110 1111 1111 12223333443 245677
Q ss_pred HHHHHHhhhhhHHH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 176 FVYTSFQERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 176 ~vy~~fqE~AT~i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
+++-++.|..-+-| ....--+++.-.=|-++++...|++||..|..|...++.......|+
T Consensus 156 ~va~~~lEgi~FysgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~ 217 (324)
T PRK13966 156 KVASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDD 217 (324)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCh
Confidence 78777788762221 11111223333456789999999999999999999999877665554
No 34
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=93.66 E-value=1.1 Score=43.37 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=85.2
Q ss_pred hc-ccchhHHHHhhhh-cCCccccCCCchh-HHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCC
Q 018588 91 TE-EALPTYQTMLNTL-DGVRDETGASLTS-WATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPK 167 (353)
Q Consensus 91 TE-d~LPtY~~~L~~~-~g~~~~~~~~~~~-w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~ 167 (353)
+| .+....-..+.++ .+. +.+ ...|+ +...||.||=..|++.|.-- |++-+
T Consensus 77 IE~~AIdLa~Da~~RF~~~l-------P~~f~~D~~-~va~dEarHf~ll~~rL~~l------------------G~~yG 130 (253)
T PF04305_consen 77 IELNAIDLALDAIYRFHPNL-------PREFYDDWL-RVADDEARHFRLLRERLEEL------------------GSDYG 130 (253)
T ss_pred hHHHHHHHHHHHHHHHhccC-------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHh------------------CCCCC
Confidence 46 4445555555555 333 222 23333 45679999999999988221 55554
Q ss_pred CCCCchhhHHHHHHhhhhhHHHH------------------hhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 168 FENNPYNGFVYTSFQERATFISH------------------GNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 168 ~~~~p~~~~vy~~fqE~AT~i~y------------------~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
. =|.+.-.+.+.++++..+.. .-+.++ ...||...+.|+..|-.||..|-++=.+-++.
T Consensus 131 d--~P~h~gLw~~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~-~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~ 207 (253)
T PF04305_consen 131 D--LPAHDGLWEAAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKF-RSAGDEESAAILEIILRDEIGHVAIGNRWFRY 207 (253)
T ss_pred C--cchhhHHHHHHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 34555555555554422211 112223 34899999999999999999999999999999
Q ss_pred HHhhCChhHHHHHHHHHh
Q 018588 230 LFEIDPDDTILALAGMMK 247 (353)
Q Consensus 230 ~le~dpd~a~~Ai~~~m~ 247 (353)
+.+..+.+....+...+.
T Consensus 208 ~c~~~~~~p~~~f~~lv~ 225 (253)
T PF04305_consen 208 LCEQRGLDPWETFRELVR 225 (253)
T ss_pred HHHhccccHHHHHHHHHH
Confidence 999888888899999996
No 35
>PLN02492 ribonucleoside-diphosphate reductase
Probab=93.57 E-value=1.8 Score=42.94 Aligned_cols=116 Identities=16% Similarity=-0.020 Sum_probs=66.8
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhH---H----------HHHHHHHhCCCCCCCCCchhhHHHHHHh
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIE---K----------SIQYLIRSGMDPKFENNPYNGFVYTSFQ 182 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE---~----------~~~~~i~~G~~~~~~~~p~~~~vy~~fq 182 (353)
.++...+...+.+.|+-|+.+-...+..-+ -||.... . ..+. +. ++... ..+.+..++.-.+.
T Consensus 86 ~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~-~d~~~~~~~f~~~~~~p~l~~K~~~-~~-~~~~~-~~~~~~~lva~~~l 161 (324)
T PLN02492 86 VPEARAFYGFQIAIENIHSEMYSLLLDTYI-KDPKEKDRLFNAIETIPCVAKKADW-AL-RWIDS-SASFAERLVAFACV 161 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCHHHHHHHHH-HH-HHHhh-hHHHHHHHHHHHhh
Confidence 566778999999999999988544432211 1443311 1 1111 11 11111 12445555544455
Q ss_pred hhhhHHH-HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCC
Q 018588 183 ERATFIS-HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 235 (353)
Q Consensus 183 E~AT~i~-y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dp 235 (353)
|---+.+ +..+--+++.--=|-++++...|++||.+|..|...++..+.+.-+
T Consensus 162 Egi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~ 215 (324)
T PLN02492 162 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLS 215 (324)
T ss_pred hHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 6532221 2222223332335668899999999999999999999998885433
No 36
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=93.53 E-value=1 Score=39.89 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=85.5
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHh-cCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLS-GRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 194 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~s-g~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~a 194 (353)
-+.+++|.+.=..||..|++.|-+|+... |.++...++.- ......++...|-..-=.|.--...+..+.
T Consensus 36 l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~---------~~~~~~~~~e~l~~al~~E~~vt~~~~~l~ 106 (161)
T cd01056 36 LPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKP---------EKDEWGSGLEALELALDLEKLVNQSLLDLH 106 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCC---------CCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999543 34444442221 001224777777777778887777788899
Q ss_pred HHHhhhCCHHHHHHHhH-hhhhhhHhHHHHHHHHHHHHhhC
Q 018588 195 RLVKKHGDMKLAQICGT-IASDEKRHETAYTKIVEKLFEID 234 (353)
Q Consensus 195 rla~~~gdPvL~~I~~~-IA~DE~RH~~~Y~~iv~~~le~d 234 (353)
++|...+|++....+.. +=.++..|.+.+.++++.+-.+.
T Consensus 107 ~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~~~ 147 (161)
T cd01056 107 KLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRVG 147 (161)
T ss_pred HHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999997 99999999999999998755443
No 37
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=93.14 E-value=4 Score=41.44 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=30.4
Q ss_pred CHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh--hCCh
Q 018588 202 DMKLAQICGTIASDEKRHETAYTKIVEKLFE--IDPD 236 (353)
Q Consensus 202 dPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le--~dpd 236 (353)
=|-++++...|++||..|-.|...+++.+.. .+|+
T Consensus 225 m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~~~e~p~ 261 (376)
T PRK09101 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPE 261 (376)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChh
Confidence 4557899999999999999999999999885 6665
No 38
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=93.08 E-value=3.3 Score=39.15 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=94.9
Q ss_pred HHHhhhcccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHH-HHhcCC-ChH-----H-hH----
Q 018588 86 VGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYL-YLSGRV-DMK-----Q-IE---- 153 (353)
Q Consensus 86 v~~~lTEd~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL-~~sg~v-Dp~-----~-lE---- 153 (353)
..-...|-++-.....++..-. .+.|..-.---+..|.||...+.-++ .+++.. ++. . .+
T Consensus 80 ~~~~~~E~ga~~~~a~~~r~~~--------~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w~~~p~w 151 (233)
T PF02332_consen 80 GPLRHAEYGAQMASAYIARFAP--------GTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAWLNDPAW 151 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-S--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHHHHSHHH
T ss_pred CCcchHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHHhhCchh
Confidence 3334456555555555544321 45666666677889999999888776 332222 222 1 11
Q ss_pred HHHHHHHHhCCCCCCCCCchhhHHHHHHh-h-hhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 154 KSIQYLIRSGMDPKFENNPYNGFVYTSFQ-E-RATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 154 ~~~~~~i~~G~~~~~~~~p~~~~vy~~fq-E-~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
+-...++..-+-. .++...+++..++ | .-|.+.+..+.+.|...||..+..|+.-|-.||.||.+-=..+++-++
T Consensus 152 q~~R~~vE~~~~~---~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~al~~~~~ 228 (233)
T PF02332_consen 152 QPLRRLVEDLLVT---YDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGDALFKMAL 228 (233)
T ss_dssp HHHHHHHHHHTTS---SSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344433332 3777777777665 4 447888888899999999999999999999999999999999999988
Q ss_pred hhCCh
Q 018588 232 EIDPD 236 (353)
Q Consensus 232 e~dpd 236 (353)
+-+|+
T Consensus 229 ~~~~~ 233 (233)
T PF02332_consen 229 EDDPN 233 (233)
T ss_dssp CTTTH
T ss_pred hCCCC
Confidence 87764
No 39
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=92.67 E-value=0.69 Score=39.58 Aligned_cols=99 Identities=20% Similarity=0.196 Sum_probs=68.3
Q ss_pred hhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH------hhCChhHHHHHHHHHhhccCCCCc
Q 018588 182 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF------EIDPDDTILALAGMMKKRFRMPGH 255 (353)
Q Consensus 182 qE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l------e~dpd~a~~Ai~~~m~~~~~MP~~ 255 (353)
-|......|...++.|+.-|-|.++..+..+|.+|..|..-|.+.+..+- ..+...+...|...+.. -.
T Consensus 12 ~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~-E~---- 86 (134)
T cd01041 12 GESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAG-ET---- 86 (134)
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHh-hH----
Confidence 45566677888899999999999999999999999999999888876531 12224444444444431 00
Q ss_pred cCCCCCcchhhhhHHHHHHHhCCCChhcHH-HHHH
Q 018588 256 FMYDGQDDKIFDHFSAVTQRLGVYTGHDYA-DILE 289 (353)
Q Consensus 256 ~m~d~~~~~lf~~~a~~a~~~GiY~~~~y~-~Il~ 289 (353)
..-...|..+..+|.+.|-++..+.. .|++
T Consensus 87 ----~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~ 117 (134)
T cd01041 87 ----YEYTEMYPEFAEVAEEEGFKEAARSFEAIAE 117 (134)
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00124677788888888888877753 3543
No 40
>PRK10304 ferritin; Provisional
Probab=92.60 E-value=2.5 Score=38.14 Aligned_cols=104 Identities=16% Similarity=0.075 Sum_probs=77.9
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcC-CChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGR-VDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 194 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~-vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~a 194 (353)
-+.++.|.+.=..||-.|+..|-+|+...|. +....+.. .+....++...|-..-=.|+.-..++.++.
T Consensus 36 l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~----------p~~~~~s~~e~~~~~l~~E~~vt~~i~~l~ 105 (165)
T PRK10304 36 FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVES----------PFAEYSSLDELFQETYKHEQLITQKINELA 105 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCC----------CccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999966443 33222111 011124666666666668888888888999
Q ss_pred HHHhhhCCHHHHHHHhHhhhh---hhHhHHHHHHHHHH
Q 018588 195 RLVKKHGDMKLAQICGTIASD---EKRHETAYTKIVEK 229 (353)
Q Consensus 195 rla~~~gdPvL~~I~~~IA~D---E~RH~~~Y~~iv~~ 229 (353)
++|...+|++....+..+-.+ |..|....-.-++.
T Consensus 106 ~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~ 143 (165)
T PRK10304 106 HAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSL 143 (165)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 78887765555554
No 41
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=91.68 E-value=1.5 Score=37.30 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=67.4
Q ss_pred HhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCccCCCC
Q 018588 181 FQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDG 260 (353)
Q Consensus 181 fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~MP~~~m~d~ 260 (353)
--|......|...++.|+.-|.|-+++....+|..|..|...|.+++.. -|..+...|..++.. -. +
T Consensus 11 ~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~----i~~~~~~~le~a~~~-E~--------~ 77 (123)
T cd01046 11 KGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGK----VSEDTKENLEMMLEG-EA--------G 77 (123)
T ss_pred HhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHh-HH--------H
Confidence 3566666778888999999999999999999999999999999997643 235666666666641 00 1
Q ss_pred CcchhhhhHHHHHHHhCCCChhcH
Q 018588 261 QDDKIFDHFSAVTQRLGVYTGHDY 284 (353)
Q Consensus 261 ~~~~lf~~~a~~a~~~GiY~~~~y 284 (353)
. ...|..++.+|.+.|-|+..+.
T Consensus 78 ~-~~~~~~~~~~A~~egd~~~~~~ 100 (123)
T cd01046 78 A-NEGKKDAATEAKAEGLDEAHDF 100 (123)
T ss_pred H-HHhHHHHHHHHHHcCCHHHHHH
Confidence 1 1236778888999988887764
No 42
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=91.32 E-value=0.75 Score=37.80 Aligned_cols=49 Identities=27% Similarity=0.265 Sum_probs=42.6
Q ss_pred HHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 180 SFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 180 ~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
--.|.....+|...++ ..++|.++.++..||.||.+|...+..++..+-
T Consensus 7 ~~~E~~~~~~Y~~~a~---~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 7 IKMEEEAAEFYLELAE---KAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHHh---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3468888889988555 588999999999999999999999999998864
No 43
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=91.01 E-value=0.97 Score=35.30 Aligned_cols=51 Identities=27% Similarity=0.221 Sum_probs=41.2
Q ss_pred HHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 178 YTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 178 y~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
....-|......|...+.. ..+|.+++++..++.||.+|...+.+++..+-
T Consensus 5 ~~~~~E~~a~~~y~~~~~~---~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g 55 (130)
T cd00657 5 DALAGEYAAIIAYGQLAAR---APDPDLKDELLEIADEERRHADALAERLRELG 55 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344677777778775554 56999999999999999999999999987753
No 44
>PRK13456 DNA protection protein DPS; Provisional
Probab=89.70 E-value=12 Score=34.96 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhhc-ccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcC---CChHHhHH
Q 018588 79 AEHFVALVGEMITE-EALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGR---VDMKQIEK 154 (353)
Q Consensus 79 d~~~v~lv~~~lTE-d~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~---vDp~~lE~ 154 (353)
+.++-.|.-++-+| .+.=-|...-..+-|. ...+.+.++..=..||.+|++.|..=++-=|. .||..+
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~-- 90 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGL------EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREF-- 90 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHH--
Confidence 56666777777776 3333444444445554 44567788888788999999999865542233 355532
Q ss_pred HHHHHHHhCCCCCCC-CCchhhHHH-HHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh
Q 018588 155 SIQYLIRSGMDPKFE-NNPYNGFVY-TSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 232 (353)
Q Consensus 155 ~~~~~i~~G~~~~~~-~~p~~~~vy-~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le 232 (353)
..+.+|+|-.... .+-+..|+= .-.-|+..=..|+.+-+.+. -.||+=..|.-.|=+||..|+.-|.++++
T Consensus 91 --~~ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~~IL~dE~eH~~dl~~lL~---- 163 (186)
T PRK13456 91 --HDISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLALAILQEEIEHEAWFSELLG---- 163 (186)
T ss_pred --hhhhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 3356778843332 212444444 44458888888998888876 44999999999999999999999888764
Q ss_pred hCChh
Q 018588 233 IDPDD 237 (353)
Q Consensus 233 ~dpd~ 237 (353)
.-|.+
T Consensus 164 ~~~~~ 168 (186)
T PRK13456 164 GGPSG 168 (186)
T ss_pred cCCCc
Confidence 45544
No 45
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=89.56 E-value=2.7 Score=38.43 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=59.9
Q ss_pred hhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCccCCCCCc
Q 018588 183 ERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQD 262 (353)
Q Consensus 183 E~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~MP~~~m~d~~~ 262 (353)
|.--..-|.-.++.|+.-|.|-++.+...||-+|..|..-+.+++..+. .-..++..-+..++. +-. +..
T Consensus 16 Es~a~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~-~~~~~~~eNl~~aie-GE~--------~e~ 85 (166)
T COG1592 16 ESMAVMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL-LVLGDTRENLEEAIE-GET--------YEI 85 (166)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccHHHHHHHHHc-cch--------HHH
Confidence 3333445777778888999999999999999999999999999999877 333344555555553 111 133
Q ss_pred chhhhhHHHHHHHhC
Q 018588 263 DKIFDHFSAVTQRLG 277 (353)
Q Consensus 263 ~~lf~~~a~~a~~~G 277 (353)
...|..|+.+++.-|
T Consensus 86 ~emyp~~ae~A~~~g 100 (166)
T COG1592 86 TEMYPVFAEVAEEEG 100 (166)
T ss_pred HHhChHHHHHHHHcC
Confidence 345556777777666
No 46
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=88.03 E-value=1.7 Score=42.08 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=95.9
Q ss_pred hchhhhhhhhHHHHhHHHHh-c-CCChHHhHHHHHHHHHhCCC------CCCCCCchhhHHHHHHhhhhhHHHHhhHHHH
Q 018588 125 AWTAEENRHGDLLNKYLYLS-G-RVDMKQIEKSIQYLIRSGMD------PKFENNPYNGFVYTSFQERATFISHGNTARL 196 (353)
Q Consensus 125 ~WtAEEnRHg~aL~~YL~~s-g-~vDp~~lE~~~~~~i~~G~~------~~~~~~p~~~~vy~~fqE~AT~i~y~n~arl 196 (353)
+=..+|..|+..|-.|+--- | ..|++.+.-.+. ...|. .+. .+=...++...|.+++-.+.+..+..
T Consensus 54 ~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~---~~~~rn~~l~e~p~-~dwa~~v~r~~l~d~~~~~~l~~l~~- 128 (263)
T PF05138_consen 54 NIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRD---AREFRNLLLFEQPN-GDWADTVARQFLFDRAGKVLLEALAD- 128 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHH---TTCS-SSGGGGS----SHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcc---cchhhhhhhhccCC-CCHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 44568999999999999332 3 235555444322 11221 111 24456888889999999998877533
Q ss_pred HhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhC---ChhHHHHHHHHHhhccCCCCccCCCCCcchhhhhHHHHH
Q 018588 197 VKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID---PDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVT 273 (353)
Q Consensus 197 a~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~d---pd~a~~Ai~~~m~~~~~MP~~~m~d~~~~~lf~~~a~~a 273 (353)
+.++.|++++.+|-++|.-|..+-.+.+.++-.-. .+.+..||..+....-. |+.-.+. ....
T Consensus 129 ---ssy~pla~~a~k~~kEe~yH~~h~~~w~~rL~~gt~es~~r~q~Al~~~wp~~~e-----lF~~~~~------~~~l 194 (263)
T PF05138_consen 129 ---SSYEPLAAIAAKILKEEAYHLRHGEDWLRRLGDGTEESRERMQAALDRLWPYTLE-----LFGPDDS------EEAL 194 (263)
T ss_dssp ----SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-----CC-S-HC------HHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-----HcCCCch------HHHH
Confidence 77999999999999999999999999999988444 34566677666652211 2221111 1222
Q ss_pred HHhCCCChh-----cHHHHHHHHHhcccccc
Q 018588 274 QRLGVYTGH-----DYADILEFLIERWKVEK 299 (353)
Q Consensus 274 ~~~GiY~~~-----~y~~Il~~ll~~W~i~~ 299 (353)
...|+-... .+.+.+.+++.+.++.-
T Consensus 195 ~~~~~~~~~~~lr~~w~~~v~~~l~~~gL~~ 225 (263)
T PF05138_consen 195 AWGGRAPDNEELRQRWLAEVVPVLEEAGLEV 225 (263)
T ss_dssp HCTTSSS-HHHHHHHHHHHHHHHHHHTT---
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 233332221 25577788888877653
No 47
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=87.08 E-value=4.6 Score=35.04 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=62.8
Q ss_pred hhhhhhhhHHHHhHHHHhcCCChHHhHH---H----HHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhh
Q 018588 127 TAEENRHGDLLNKYLYLSGRVDMKQIEK---S----IQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKK 199 (353)
Q Consensus 127 tAEEnRHg~aL~~YL~~sg~vDp~~lE~---~----~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~ 199 (353)
..+|.+|-+.|..-+---+--+|..-.. + ...++..| ..+....+-..+-.|...--+|..+++ .
T Consensus 36 a~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~-----~~s~~~al~~g~~~E~~~i~~ye~~~~---~ 107 (135)
T cd01048 36 AESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQG-----PKSLQDALEVGVLIEELDIADYDRLLE---R 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 3689999999998884333323322110 0 00011111 135566777778889999999988444 6
Q ss_pred hCCHHHHHHHhHhhhhhhHhHHHHHHH
Q 018588 200 HGDMKLAQICGTIASDEKRHETAYTKI 226 (353)
Q Consensus 200 ~gdPvL~~I~~~IA~DE~RH~~~Y~~i 226 (353)
+.||.+++++.+++.-|..|+..|.+-
T Consensus 108 ~~d~d~k~v~~~L~~~e~~H~~~f~~~ 134 (135)
T cd01048 108 TQNPDIRDVFENLQAASRNHHLPFFRR 134 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999988763
No 48
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=86.82 E-value=9.1 Score=32.61 Aligned_cols=113 Identities=8% Similarity=-0.016 Sum_probs=81.8
Q ss_pred cCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHh
Q 018588 112 TGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHG 191 (353)
Q Consensus 112 ~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~ 191 (353)
.|.+..++...+.....|+..|.+.|..-+..-|..-+...+....+..-..... ...++-..+-...-.|..+...++
T Consensus 25 ~G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~-~~~~~~~~l~~~~~~~~~~i~~~~ 103 (139)
T cd01043 25 KGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA-GVLSAKEMVAELLEDYETLIEELR 103 (139)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888899999999999999999997766654444444332222111110 112445567777777888888899
Q ss_pred hHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHH
Q 018588 192 NTARLVKKHGDMKLAQICGTIASDEKRHETAYTK 225 (353)
Q Consensus 192 n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~ 225 (353)
..-+.|...+||+.+.++..|-+++..|--+...
T Consensus 104 ~~i~~a~~~~D~~t~~ll~~il~~~ek~~w~l~a 137 (139)
T cd01043 104 EAIELADEAGDPATADLLTEIIRELEKQAWMLRA 137 (139)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888889999999999999999988776654
No 49
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=86.81 E-value=1.5 Score=38.31 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=39.2
Q ss_pred HHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCC
Q 018588 180 SFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 235 (353)
Q Consensus 180 ~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dp 235 (353)
+.-|.++...|-..+... ..++|.+++++..+|.||.+|...+.+++..+ .-+|
T Consensus 25 ~~~E~~ai~~Y~y~~~~~-~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~l-gg~p 78 (154)
T cd07908 25 TNSELTAISQYIYQHLIS-EEKYPEIAETFLGIAIVEMHHLEILGQLIVLL-GGDP 78 (154)
T ss_pred cchHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 334555555555433333 34789999999999999999999999998773 3344
No 50
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=2.7 Score=38.45 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=50.7
Q ss_pred CchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhC
Q 018588 171 NPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 234 (353)
Q Consensus 171 ~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~d 234 (353)
+....+.+.--.|..---+|..+++. ..|+-++++...||.||.+|..-|.+++.+...-+
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~---~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAER---IEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 45567777778888888889996664 77999999999999999999999999988755443
No 51
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=85.44 E-value=1.6 Score=43.63 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=32.4
Q ss_pred HHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 187 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 187 ~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
.+-|.-++|..+ ..+|+|+++.+..|+||+||..|--+-++
T Consensus 89 flLYKEl~rrlk-~~~P~lae~F~~MaRDEARHAGFlNkam~ 129 (337)
T TIGR02029 89 FLLYKELSRRLK-NRDPVVAELFQLMARDEARHAGFLNKALG 129 (337)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 445555555443 36999999999999999999999877776
No 52
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=85.11 E-value=15 Score=38.53 Aligned_cols=116 Identities=21% Similarity=0.177 Sum_probs=76.5
Q ss_pred hhHHHHHhhchhhhhhhhHHHHhHH-HHhc---CCChHH--h-H----HHHHHHHHhCCCCCCCCCchhhHHHHHHh-hh
Q 018588 117 TSWATWIRAWTAEENRHGDLLNKYL-YLSG---RVDMKQ--I-E----KSIQYLIRSGMDPKFENNPYNGFVYTSFQ-ER 184 (353)
Q Consensus 117 ~~w~~w~~~WtAEEnRHg~aL~~YL-~~sg---~vDp~~--l-E----~~~~~~i~~G~~~~~~~~p~~~~vy~~fq-E~ 184 (353)
..+....---+.-|.||+...--|. .++. .+|-.. . + ......+...+-. .++...+++..|+ |.
T Consensus 107 ~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~~~~R~~~ed~~~t---~D~~E~~valnlvfE~ 183 (465)
T cd01057 107 AELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYAGAAKRFFFDGFIT---GDAVEAALALQFVFET 183 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHHHHHHHHHHHHHhc---CCHHHHHHHHHhhHHH
Confidence 3466777777889999998765544 2222 223221 0 0 0111222222221 3666665555443 44
Q ss_pred -hhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 185 -ATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 185 -AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
-|...-..+++.|...||.++..+..-|-+||.||.+-=...| .++..||+
T Consensus 184 ~ftnl~~~~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~~g~~ll-~~l~~Dp~ 235 (465)
T cd01057 184 AFTNLLFVALASDAAANGDYATPTVFLSIQSDEARHMANGYPTL-VLLENDPD 235 (465)
T ss_pred hhhHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhHHHHH-HHHHcCcc
Confidence 4666666778888899999999999999999999999999999 88888986
No 53
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=84.03 E-value=8.1 Score=34.25 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=77.6
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHh-cCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLS-GRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 194 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~s-g~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~a 194 (353)
-+.++.|.+.=..||-.|+..|-+|+.-- |.+....+... ......++...|-..--.|+.-..+..++.
T Consensus 36 l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~---------~~~~~~~~~e~~e~al~~Ek~v~~~i~~l~ 106 (160)
T cd00904 36 LKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKP---------PSDEWGGTLDAMEAALKLEKFVNQALLDLH 106 (160)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCC---------cccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999543 33333332221 010113666677666667877777788889
Q ss_pred HHHhhhCCHHHHHHHhH-hhhhhhHhHHHHHHHHHHHH
Q 018588 195 RLVKKHGDMKLAQICGT-IASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 195 rla~~~gdPvL~~I~~~-IA~DE~RH~~~Y~~iv~~~l 231 (353)
++|...+|++....+.. .-.+-..-.+-+.+++..+-
T Consensus 107 ~~A~~~~D~~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~ 144 (160)
T cd00904 107 ELASEEKDPHLCDFLESHFLDEQVKEIKQVGDILTNLE 144 (160)
T ss_pred HHHHHCCCHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Confidence 99988999999999887 77777777777777776543
No 54
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=83.27 E-value=19 Score=41.29 Aligned_cols=142 Identities=17% Similarity=0.102 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhhcccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHH-HH
Q 018588 79 AEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKS-IQ 157 (353)
Q Consensus 79 d~~~v~lv~~~lTEd~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~-~~ 157 (353)
.-..-+|..++-.|...=.|-+.++.-- .+..-......=..||.+|-+.|.+.+.- ..|..-+.. ..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a--------~~~~~K~lF~~LA~eE~~H~~~l~~~~~~---~~~~~~~~~~~~ 927 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKET--------SDPVLKELFLKFAGMEQEHMATLARRYHA---AAPSPTEGFKIE 927 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCcccccccc
Confidence 4566678888888987777776776653 26677888888889999999988777631 111110110 00
Q ss_pred -HHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCH-HHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCC
Q 018588 158 -YLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDM-KLAQICGTIASDEKRHETAYTKIVEKLFEIDP 235 (353)
Q Consensus 158 -~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdP-vL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dp 235 (353)
.....++... ..++...+-...-.|+.+-.+|..+++ .+.|| ..++|+..||.=|..|.....+.+++.-+-.|
T Consensus 928 ~~~~~~~~~~~-~~~~~~al~lAm~~Ekdai~fY~~la~---~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~~~~~ 1003 (1006)
T PRK12775 928 RAAIMAGVKGR-PDDPGNLFRIAIEFERRAVKFFKERVA---ETPDGSVERQLYKELAAEEREHVALLTTEFERWKQGKP 1003 (1006)
T ss_pred hhhhhhhhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHh---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0111122121 235677888888899999999999665 57788 58999999999999999999999988765443
No 55
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=82.50 E-value=2.4 Score=42.25 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=32.5
Q ss_pred hHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 186 TFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 186 T~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
-.+-|.-++|..+. .+|+|+++.+..|+||+||..|--+-++
T Consensus 78 GflLYKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkam~ 119 (323)
T cd01047 78 GFLLYKELGRRLKN-TNPVVAELFRLMARDEARHAGFLNKALS 119 (323)
T ss_pred hHHHHHHHHHHccc-CCcHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 34556666665332 3699999999999999999999877776
No 56
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=82.41 E-value=2.5 Score=42.52 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 187 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 187 ~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
.+-|.-++|..+ ..+|+|+++.+..|+||+||..|--+.++
T Consensus 95 flLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (351)
T CHL00185 95 FLLYKELSRKLK-DKNPLLAEGFLLMSRDEARHAGFLNKAMS 135 (351)
T ss_pred hHHHHHHHHHhc-cCCcHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 445556566433 34799999999999999999999877776
No 57
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=81.87 E-value=2.6 Score=42.57 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=32.0
Q ss_pred HHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 187 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 187 ~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
.+-|.-++|..+ ..+|+|+++.+..|+||+||..|--+-++
T Consensus 99 flLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 139 (355)
T PRK13654 99 FLLYKELSRRLK-DRNPLLAELFQLMARDEARHAGFLNKAMK 139 (355)
T ss_pred HHHHHHHHHhcc-ccCcHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 344555555433 23899999999999999999999888776
No 58
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=81.02 E-value=2.4 Score=42.65 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=32.7
Q ss_pred HHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 187 FISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 187 ~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
.+-|..++|..+ ..+|+|+++.+..|+||+||..|--+.++
T Consensus 95 flLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (357)
T PLN02508 95 FLLYKELGRRLK-KTNPVVAEIFTLMSRDEARHAGFLNKALS 135 (357)
T ss_pred chHHHHHHHhcc-cCChHHHHHHHHhCchhHHHHhHHHHHHH
Confidence 445666666433 24799999999999999999999888877
No 59
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=80.50 E-value=31 Score=34.16 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=80.1
Q ss_pred hhHHHHHhhchhhhhhhhHHHHhHH-HHhcCC-ChHHhHHHHH------------HHHHhCCCCCCCCCchhhHHHHHHh
Q 018588 117 TSWATWIRAWTAEENRHGDLLNKYL-YLSGRV-DMKQIEKSIQ------------YLIRSGMDPKFENNPYNGFVYTSFQ 182 (353)
Q Consensus 117 ~~w~~w~~~WtAEEnRHg~aL~~YL-~~sg~v-Dp~~lE~~~~------------~~i~~G~~~~~~~~p~~~~vy~~fq 182 (353)
+.+....---+.-|.||+.-+-.|. .+++.. ++. ....++ .++...+-. .++...++...|+
T Consensus 129 ~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~-~~~~k~~W~~dp~Wq~~R~~~E~~~~~---~Dw~E~~va~nlv 204 (304)
T cd01058 129 TTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFD-GDAAKEAWEEDPAWQGLRELVEKLLVT---YDWGEAFVAQNLV 204 (304)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCC-chHHHHHHhcCchhHHHHHHHHHHHhh---ccHHHHHHHHHHH
Confidence 4566666677889999999988776 555442 221 221111 222222211 2566666655543
Q ss_pred --hhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh
Q 018588 183 --ERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 236 (353)
Q Consensus 183 --E~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd 236 (353)
=.-|...+..+.+.|...||..+..+..-+-.||.||.+-=..+|+-+++.+|+
T Consensus 205 ~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~s~q~d~~Rh~~~~~alvk~l~~~~~~ 260 (304)
T cd01058 205 FDPLVGELVRRELDRLAASNGDTLTPLLTEFMLDDAQRHRRWTDALVKTAAEDSPH 260 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHccChh
Confidence 335777788888899899999999999999999999999999999977776565
No 60
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=80.11 E-value=25 Score=29.69 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=58.3
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTAR 195 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ar 195 (353)
++.-..-...=..+|-+|...+++++---|..-+....+...+.+-..+ . ++...+-..--.|..+-.+|..+..
T Consensus 26 ~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~---g~~~~l~~~~~~E~~ai~~Y~~~~~ 100 (125)
T cd01044 26 DPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYKLLARI--F---GPTFVLKLLERGEERAIEKYDRLLE 100 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHH--H---hHHHHHHHHHHhHHhhHhhHHhhhh
Confidence 3445666667777999999999999854333221111111111111110 0 1111111222368888899988665
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
. ..++.+|+.||..|+.-+.++++
T Consensus 101 ~---------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 101 E---------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred h---------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 45778899999999998887654
No 61
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=79.19 E-value=19 Score=33.43 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=76.6
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcC----CChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHh
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGR----VDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHG 191 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~----vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~ 191 (353)
..++..=+..=.-||-+|=.-..+-+.--|. ..+...-.....+++.| +| .--+..++..++.| +=||-
T Consensus 47 ~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~-~p---~~llD~Llv~alIE---ARScE 119 (180)
T cd07910 47 KPELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKG-EP---ERLLDRLLVAALIE---ARSCE 119 (180)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccC-Ch---HHHHHHHHHHHHHH---HHhHH
Confidence 3455555566667999997776666644332 22222333333444432 22 13356888888888 45778
Q ss_pred hHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh
Q 018588 192 NTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 232 (353)
Q Consensus 192 n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le 232 (353)
..+.+|...-|+.|++..+.+..-|+|||.-|-.+-..++.
T Consensus 120 RF~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 120 RFALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 88889877789999999999999999999999999999886
No 62
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=69.80 E-value=21 Score=33.07 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=80.7
Q ss_pred HhhchhhhhhhhHHHHhHHHHhcCCChHH-----hHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHH
Q 018588 123 IRAWTAEENRHGDLLNKYLYLSGRVDMKQ-----IEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLV 197 (353)
Q Consensus 123 ~~~WtAEEnRHg~aL~~YL~~sg~vDp~~-----lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla 197 (353)
+..-.-||.+|=...+..|-- |.+--+- .-.....+++. -+| ..-...++-+++-| +-||.+.|.+|
T Consensus 64 m~~larEEL~HFeqV~eilq~-RnI~~~~i~asrYa~~l~~~~rt-~EP---qrliD~Livga~IE---ARScERfa~La 135 (203)
T COG4445 64 MVLLAREELHHFEQVLEILQA-RNIPYVPIPASRYAKGLLAAVRT-HEP---QRLIDKLIVGAYIE---ARSCERFAALA 135 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCccccCCccHHHHHHHHHHHh-cCc---HHHHHHHHHHHHHh---hhhHHHHHhhc
Confidence 345556999998888777744 2222211 11211122221 111 13345788888887 45788888888
Q ss_pred hhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhh-CChhHHHHHHHHHhhccCCC
Q 018588 198 KKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI-DPDDTILALAGMMKKRFRMP 253 (353)
Q Consensus 198 ~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~-dpd~a~~Ai~~~m~~~~~MP 253 (353)
-.+ |..|++...-+-+-|+|||.-|..+-..+++. |=++.+.-|+.+=..-|.-|
T Consensus 136 phl-deelakFY~gLl~SEaRHfqdYl~LA~qy~d~~dvs~rv~~~~~vEaeLi~sp 191 (203)
T COG4445 136 PHL-DEELAKFYKGLLRSEARHFQDYLVLADQYFDEEDVSQRVDYFGIVEAELISSP 191 (203)
T ss_pred ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 766 55999999999999999999999999999988 77777777766654334433
No 63
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=69.51 E-value=8.2 Score=38.79 Aligned_cols=54 Identities=17% Similarity=0.420 Sum_probs=34.1
Q ss_pred hHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHH
Q 018588 97 TYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 154 (353)
Q Consensus 97 tY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~ 154 (353)
+|.++|.-+-......--..-|..+|...|--.|||||+...--+ +.+|..+..
T Consensus 165 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~g 218 (337)
T TIGR02029 165 GYWRYITIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALM----RSQPQLLNN 218 (337)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHH----hcChhhhhh
Confidence 355555543332222212235889999999999999999987666 345655443
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=68.69 E-value=11 Score=43.02 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=45.3
Q ss_pred hhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 173 YNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 173 ~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
...+-+..--|.....||..+++ .+++|.+++|...+|..|..|+..+.++++.
T Consensus 862 ~eil~~Ai~mE~~g~~FY~~~A~---~a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 862 LEAIRTAFEIELGGMAFYARAAK---ETSDPVLKELFLKFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566679999999998554 6889999999999999999999999888764
No 65
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=68.37 E-value=5.1 Score=40.01 Aligned_cols=54 Identities=19% Similarity=0.429 Sum_probs=34.2
Q ss_pred hHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHH
Q 018588 97 TYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 154 (353)
Q Consensus 97 tY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~ 154 (353)
+|.++|.-+-......--..-|..+|...|--.|||||+...--+ +.+|..+..
T Consensus 155 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~~ 208 (323)
T cd01047 155 GYWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALL----RAQPHLLND 208 (323)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHH----hcChhhhhh
Confidence 355555543332222212235889999999999999999987666 346655443
No 66
>PRK15022 ferritin-like protein; Provisional
Probab=66.85 E-value=1e+02 Score=28.09 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=70.3
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcC-CChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGR-VDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA 194 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~-vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~a 194 (353)
-+.+++|...=..||--|+.-+-+|+.-.|. +--..+..- +..-+++...|-.+-=+|+.-.-+-.++.
T Consensus 36 L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P----------~~~~~s~~e~fe~al~hEk~vt~~I~~L~ 105 (167)
T PRK15022 36 LNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVP----------GEKLNSLEELFQKTLEEYEQRSSTLAQLA 105 (167)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999955433 222221110 11114777888888888888888889999
Q ss_pred HHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 195 RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 195 rla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
++|...+|+.....+.--=....-=++-+.+++++
T Consensus 106 ~~A~~~~D~~t~~FL~wfv~EQ~eEe~~~~~ild~ 140 (167)
T PRK15022 106 DEAKALNDDSTLNFLRDLEKEQQHDGLLLQTILDE 140 (167)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998777664332222222344444443
No 67
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=66.42 E-value=5.6 Score=40.14 Aligned_cols=35 Identities=26% Similarity=0.593 Sum_probs=26.9
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 154 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~ 154 (353)
.-|..+|...|--.|||||+...--+ +.+|..+..
T Consensus 190 ~~PIFk~Fe~WCqDEnRHGd~Fa~lm----raqP~ll~g 224 (357)
T PLN02508 190 LYPIFKYFENWCQDENRHGDFFSALL----KAQPQFLND 224 (357)
T ss_pred cchHHHHHHHHhcccchhHHHHHHHH----HcChhhhhh
Confidence 35889999999999999999977665 345555433
No 68
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=66.08 E-value=78 Score=30.48 Aligned_cols=116 Identities=12% Similarity=-0.010 Sum_probs=77.0
Q ss_pred hhhhhhhhHHHHhHHHHhcCCChHHhHHHHHH-HHHh--CCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCH
Q 018588 127 TAEENRHGDLLNKYLYLSGRVDMKQIEKSIQY-LIRS--GMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDM 203 (353)
Q Consensus 127 tAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~-~i~~--G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdP 203 (353)
.-+|.-|+..+-+|+---+..|.+.+.-.+.. ..++ =++.+. .+=..+++-..|...+..+.+.. +.+ +.++
T Consensus 32 alD~lGhAr~~y~~a~el~g~~ed~La~~R~~~~frn~~l~e~P~-gdwa~tv~r~~l~d~~~~~~l~~---L~~-ss~~ 106 (237)
T TIGR02158 32 ALDLLGHARMFLSLAGQLGGGDEDTLAFFRDEAEFRNLRLTELPN-GDFALTIARQFLYDAYKVLLLEA---LTQ-SRDV 106 (237)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHhcChHHhhhhHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHH---HHh-CCcH
Confidence 45788899999999933333477665433221 1111 112221 24455666677777777776665 433 7799
Q ss_pred HHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCC---hhHHHHHHHHHh
Q 018588 204 KLAQICGTIASDEKRHETAYTKIVEKLFEIDP---DDTILALAGMMK 247 (353)
Q Consensus 204 vL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dp---d~a~~Ai~~~m~ 247 (353)
.|+.|+.+|-+.|..|..+=.+.+.++-+-.. ..+-.|+..+..
T Consensus 107 pla~ia~K~~kEe~yH~~h~~~w~~rL~~gt~es~~r~Q~Ald~~wp 153 (237)
T TIGR02158 107 PLAAIAAKALKEARYHLQHAKTWLERLGLGTEESHRRLQEALNELWP 153 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875533 245556666554
No 69
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=66.07 E-value=13 Score=32.27 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=39.4
Q ss_pred hHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 175 GFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 175 ~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
.+.|..=-|.-..-+|..+++. +| +.++...||..|.+|+.+..+++++
T Consensus 4 ~L~~Ale~Ek~a~~~Y~~~~~k---~~---~~~~F~~la~~E~~H~~~l~~L~~~ 52 (135)
T cd01048 4 ALLYALEEEKLARDVYLALYEK---FG---GLRPFSNIAESEQRHMDALKTLLER 52 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hc---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666788888999986664 54 7899999999999999988887765
No 70
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=65.65 E-value=15 Score=35.35 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=54.1
Q ss_pred hhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCH
Q 018588 124 RAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDM 203 (353)
Q Consensus 124 ~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdP 203 (353)
..|++||.-=+.=+.+|-.+ ++.. + ..+. ..+.+-++-|..-.... +..+......|
T Consensus 29 ~fW~peEi~~~~D~~~~~~L----s~~e--~---~~~~------------~~l~~~~~~D~~v~~~l--~~~i~~~~~~~ 85 (281)
T PF00268_consen 29 NFWTPEEIDMSKDIKDWKKL----SEEE--R---EAYK------------RILAFFAQLDSLVSENL--LPNIMPEITSP 85 (281)
T ss_dssp T---GGGS-GGGHHHHHHHS-----HHH--H---HHHH------------HHHHHHHHHHHHHHHHH--HHHHHHHCSSH
T ss_pred CCCCchhcChhhhHHHHHhC----CHHH--H---HHHH------------HHHHHHHHHHhHHHhhH--HHHHHHHcCHH
Confidence 48999998877777777643 2222 1 1111 13333333333222222 13344567899
Q ss_pred HHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChh
Q 018588 204 KLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 237 (353)
Q Consensus 204 vL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~ 237 (353)
-++.+++..+..|+.|..+|..+++.+. .++..
T Consensus 86 E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~ 118 (281)
T PF00268_consen 86 EIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKE 118 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHH
Confidence 9999999999999999999999999887 44443
No 71
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=64.44 E-value=6.6 Score=39.61 Aligned_cols=35 Identities=23% Similarity=0.554 Sum_probs=26.9
Q ss_pred chhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHH
Q 018588 116 LTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEK 154 (353)
Q Consensus 116 ~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~ 154 (353)
.-|..+|...|--.|||||+...--+ +.+|..+..
T Consensus 190 ~~PIF~~FE~WCqDEnRHGdfF~alm----raqP~ll~g 224 (351)
T CHL00185 190 IYPIFKFFESWCQDENRHGDFFAALL----KSQPHLLNG 224 (351)
T ss_pred cchHHHHHHHHhcccchhHHHHHHHH----hcChhhhhh
Confidence 34889999999999999999987666 345555433
No 72
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=62.73 E-value=4.2 Score=41.08 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=29.8
Q ss_pred hHHHHhhhhcCCccccCCCchhHHHHHhhchhhhhhhhHHHHhHH
Q 018588 97 TYQTMLNTLDGVRDETGASLTSWATWIRAWTAEENRHGDLLNKYL 141 (353)
Q Consensus 97 tY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAEEnRHg~aL~~YL 141 (353)
+|.++|.-+-......--..-|..+|...|--.|||||+...--+
T Consensus 175 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm 219 (355)
T PRK13654 175 GYWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLM 219 (355)
T ss_pred hHHHHHHHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHH
Confidence 355566553332222111235889999999999999999977665
No 73
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=59.59 E-value=63 Score=29.53 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=53.9
Q ss_pred hhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHH-------------
Q 018588 128 AEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTA------------- 194 (353)
Q Consensus 128 AEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~a------------- 194 (353)
.-|.+|=+++..=+---|-.||.. +...+...+|-..=.|..+.++|..+---++.
T Consensus 36 ~SEq~Hmdav~~Ll~kY~l~dP~~-----------~~~~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~iEe~dI~DL 104 (162)
T PF09968_consen 36 RSEQRHMDAVKALLEKYGLEDPVE-----------GDPVGVFTNPELQELYNQLVEQGSKSLEDALKVGALIEELDIADL 104 (162)
T ss_dssp HHHHHHHHHHHHHHHHTT---S-S-----------S-STT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-----------cCCCCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHHHHHhhHHHH
Confidence 379999998877776656667766 54445445666666677777766654322222
Q ss_pred -HHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 195 -RLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 195 -rla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
+....+++|.+..+..++-.==..|..+|.+.+++
T Consensus 105 ~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r~L~~ 140 (162)
T PF09968_consen 105 EEALARTDNEDIKTVYENLRRGSRNHLRAFVRQLER 140 (162)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345778888888887766666898888887764
No 74
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=57.44 E-value=28 Score=30.06 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=41.1
Q ss_pred hhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 182 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 182 qE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
.|.....-|...+..++..|-|-++..+...|.+|..|...+.+++..
T Consensus 14 ~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~ 61 (156)
T cd01055 14 LELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLND 61 (156)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667778888888888899999999999999999999988877753
No 75
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=54.21 E-value=2.3e+02 Score=28.12 Aligned_cols=160 Identities=13% Similarity=0.022 Sum_probs=88.4
Q ss_pred hhhhhhhhHHHHhHHHHhcCCChHHhHHH-HH-HHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHH
Q 018588 127 TAEENRHGDLLNKYLYLSGRVDMKQIEKS-IQ-YLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMK 204 (353)
Q Consensus 127 tAEEnRHg~aL~~YL~~sg~vDp~~lE~~-~~-~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPv 204 (353)
..+|.-||..|-.|+--=|.-+.+.+... +. .-..+=|+.+. .+=....+-..|...+-.+.+.. |.+ +.++.
T Consensus 63 aqDelGHar~ly~~a~~LG~~r~ed~~a~~r~~~~f~nl~e~P~-~dwA~tivr~~l~D~~~~~~~~~---L~~-SSy~p 137 (289)
T TIGR02156 63 VQDEAGHGLYLYAAAETLGVSREELLDALLTGKAKYSSIFNYPT-LTWADIGVIGWLVDGAAIMNQTP---LCR-CSYGP 137 (289)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcChHhhccchhCCC-CCHHHHHHHHHHHHHHHHHHHHH---Hhc-CCcHH
Confidence 45788899999999932254333332211 00 01111133322 23334444445555555444444 443 77999
Q ss_pred HHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh---hHHHHHHHHHhhccCCCCccCCCCCcchhhhhHHHHHHHhCCC--
Q 018588 205 LAQICGTIASDEKRHETAYTKIVEKLFEIDPD---DTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVY-- 279 (353)
Q Consensus 205 L~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd---~a~~Ai~~~m~~~~~MP~~~m~d~~~~~lf~~~a~~a~~~GiY-- 279 (353)
|+.|+.+|-+.|.-|..+=.+.|.++-+-.++ .+-.||..+..-. ..|+.-.+. =...++...+-||-
T Consensus 138 lA~ia~Ki~KEe~yH~rh~~~wl~rL~~GT~esr~r~Q~Ald~~Wp~~-----~emFg~~d~--e~~~~~~~~~~Gi~~~ 210 (289)
T TIGR02156 138 YSRAMVRICKEESFHQRQGYEIMLTLARGTQEQRQMAQDALNRWWWPS-----LMMFGPHDA--DSPNSGQSTKWKIKRN 210 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----HhhcCCCch--hhhhHHHHHhCCCCCC
Confidence 99999999999999999999999998753332 3455565555421 122221110 01123444555666
Q ss_pred Chhc----HHHHHHHHHhccccc
Q 018588 280 TGHD----YADILEFLIERWKVE 298 (353)
Q Consensus 280 ~~~~----y~~Il~~ll~~W~i~ 298 (353)
+..+ +.+.+.+++.+-++.
T Consensus 211 ~n~eLR~~w~~~v~~~l~~agL~ 233 (289)
T TIGR02156 211 SNDELRQKFIDATVPQLESLGLT 233 (289)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCC
Confidence 3433 456677777665543
No 76
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=53.81 E-value=56 Score=32.50 Aligned_cols=80 Identities=19% Similarity=0.102 Sum_probs=66.7
Q ss_pred hhhHHHHHHhhhhhHHHHhhHHHHHhhhCC----HHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhh
Q 018588 173 YNGFVYTSFQERATFISHGNTARLVKKHGD----MKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKK 248 (353)
Q Consensus 173 ~~~~vy~~fqE~AT~i~y~n~arla~~~gd----PvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~ 248 (353)
...++..++.|-+.-.||++++++- ..| +...+-.++=.+.|+||-.+-.+++-..=.+||...-......+++
T Consensus 61 ~~~l~~~~itEd~LP~Y~~~L~~~f--~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~ 138 (297)
T cd01050 61 RVALVGNLLTEEALPTYHSMLNRLF--GLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGS 138 (297)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHc--CcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Confidence 4588999999999999999988862 124 8899999999999999999988888776667998887777787877
Q ss_pred ccCCCC
Q 018588 249 RFRMPG 254 (353)
Q Consensus 249 ~~~MP~ 254 (353)
+|.+|.
T Consensus 139 G~~~~~ 144 (297)
T cd01050 139 GFDPGT 144 (297)
T ss_pred CCCCCC
Confidence 888764
No 77
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=53.20 E-value=65 Score=33.59 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=68.2
Q ss_pred HhhchhhhhhhhHHHHhHH-HHhcCCChHHhHHHHHHH--------HHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhH
Q 018588 123 IRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKSIQYL--------IRSGMDPKFENNPYNGFVYTSFQERATFISHGNT 193 (353)
Q Consensus 123 ~~~WtAEEnRHg~aL~~YL-~~sg~vDp~~lE~~~~~~--------i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~ 193 (353)
+-+=-.||.||+=++-.-| ---|+-.-+..|...... |-..|+..+ ++=+..|++|+|.-+.-..--..
T Consensus 142 lfqvnvEEgRHlWaMvyLL~k~FG~dGreeAe~LL~rrsGd~d~PRiL~AFN~~t-~dWlsffmFT~ftDRdGk~QL~a- 219 (471)
T TIGR03225 142 LFQVNVEEGRHLWAMVYLLHKYFGRDGREEAEALLRRRSGDADNPRILGAFNEKT-PDWLSFFMFTYFTDRDGKMQLAA- 219 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHhhcCCCCCcchhhhccCCC-ccHHHHhHhheeecccchhhHHH-
Confidence 3356689999997765444 122554444444433222 222344443 34577999999999987764333
Q ss_pred HHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhh
Q 018588 194 ARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 233 (353)
Q Consensus 194 arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~ 233 (353)
+++ ++=--|++.|.-.-..|+.|+.+=..-|+++++.
T Consensus 220 --lae-S~FdPLaRt~rfMltEEahHmfvGetGv~rviqr 256 (471)
T TIGR03225 220 --LAE-SGFDPLSRTCRFMLTEEAHHMFVGESGVGRVIER 256 (471)
T ss_pred --HHh-cCCchHhhhhHHHhhhhHhHhhhhhHHHHHHHHH
Confidence 543 4444478999999999999999888666666554
No 78
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=52.84 E-value=42 Score=32.50 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=65.1
Q ss_pred CCCCCCCCCccChHH-HHHHHHHHhcCCCHHHHHHHHHHhhhcccchhHHHHhhhhcCCccccCCCchhHHHHHhhchhh
Q 018588 51 TDFLPESETSEGFYE-QVKELRERCKQLPAEHFVALVGEMITEEALPTYQTMLNTLDGVRDETGASLTSWATWIRAWTAE 129 (353)
Q Consensus 51 ~D~lP~~~~~~~F~~-~~~~lr~~~~~Lpd~~~v~lv~~~lTEd~LPtY~~~L~~~~g~~~~~~~~~~~w~~w~~~WtAE 129 (353)
.-.|+|-..-++|.- +..++. .--+...++...+.|.+...+...- .=..|
T Consensus 61 ~~ll~~~~py~~~~~~~~~~~~----------~~~~~~~~~~~~~~P~~~eLv~~Ms------------------~LarE 112 (240)
T PF06175_consen 61 QALLAWLKPYEDFVYRKDGDIQ----------KNQLSKSLQPKSHYPEKEELVDKMS------------------RLARE 112 (240)
T ss_dssp -------------------------------------------------HHHHHHHH------------------HHHHH
T ss_pred cccccccccccccccccccccc----------cccccccccccccccccHHHHHHHH------------------HHHHH
Confidence 456777522356643 233343 2334455566777888776665442 22347
Q ss_pred hhhhhHHHHhHHHHhcCCChHHhHHH--HHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHH
Q 018588 130 ENRHGDLLNKYLYLSGRVDMKQIEKS--IQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQ 207 (353)
Q Consensus 130 EnRHg~aL~~YL~~sg~vDp~~lE~~--~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~ 207 (353)
|-.|=.-.-+-+.- |.+.-..+... ...+++ -...+....-+..|+-.++.|. =|+-+.+.+|... |+-|++
T Consensus 113 EL~HFeqVl~im~~-RGi~l~~~~~d~Ya~~L~k-~vR~~ep~~lvDrLLv~AlIEA---RSCERF~lLa~~l-D~eL~~ 186 (240)
T PF06175_consen 113 ELHHFEQVLEIMKK-RGIPLGPDRKDRYAKGLRK-HVRKGEPERLVDRLLVGALIEA---RSCERFALLAEHL-DEELAK 186 (240)
T ss_dssp HHHHHHHHHHHHHH-TT---------SHHHHHHT-TS-SSTTHHHHHHHHHHHHHHH---HHHHHHHHHGGGS--HHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCCCCCcCHHHHHHHH-hccCCchHhHHHHHHHHHhHhh---hhHHHHHHHHHhh-CHHHHH
Confidence 88886555444432 22221111111 222222 1111111123568888888884 5677888898878 999999
Q ss_pred HHhHhhhhhhHhHHHHHHHHHHHHhh
Q 018588 208 ICGTIASDEKRHETAYTKIVEKLFEI 233 (353)
Q Consensus 208 I~~~IA~DE~RH~~~Y~~iv~~~le~ 233 (353)
....+..=|+|||.-|.++-..++..
T Consensus 187 FY~~Ll~SEArHy~~yl~LA~~y~~~ 212 (240)
T PF06175_consen 187 FYRSLLRSEARHYQDYLKLARQYFDE 212 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS-H
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHCCc
Confidence 99999999999999998887766654
No 79
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=52.32 E-value=1.3e+02 Score=29.91 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=76.7
Q ss_pred HHHHhhchhhhhhhhHHHHhHH-HHhcCCChHHhHHHH---------------HHHHHhCCCCCCC--------------
Q 018588 120 ATWIRAWTAEENRHGDLLNKYL-YLSGRVDMKQIEKSI---------------QYLIRSGMDPKFE-------------- 169 (353)
Q Consensus 120 ~~w~~~WtAEEnRHg~aL~~YL-~~sg~vDp~~lE~~~---------------~~~i~~G~~~~~~-------------- 169 (353)
..-+..=+.||--|=..|..=+ .+.+.+.....+... ++.+..|--+...
T Consensus 56 kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~ 135 (283)
T PF05067_consen 56 KDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQA 135 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhh
Confidence 4566667789999988888766 444555555444442 3455555544332
Q ss_pred -CCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhC
Q 018588 170 -NNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 234 (353)
Q Consensus 170 -~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~d 234 (353)
.|+..-|..-..-|..-++-|.++=+ -++||..+.+|+-+-.=|.-|...|..-++.+=+..
T Consensus 136 sGdl~aDL~~NiaAE~~AR~~yerL~~---mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 136 SGDLIADLRSNIAAEQRARLQYERLYE---MTDDPGVKDMLSFLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHT---T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 25666677777788888888888555 589999999999999999999999998888766655
No 80
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=52.19 E-value=35 Score=32.26 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=46.2
Q ss_pred hhhHHHHhhHHHHHhhhCCHHHHHHHhHhhh--------------hhhHh--HHHHHHHHHHHHhhCChhHHHHHHHHHh
Q 018588 184 RATFISHGNTARLVKKHGDMKLAQICGTIAS--------------DEKRH--ETAYTKIVEKLFEIDPDDTILALAGMMK 247 (353)
Q Consensus 184 ~AT~i~y~n~arla~~~gdPvL~~I~~~IA~--------------DE~RH--~~~Y~~iv~~~le~dpd~a~~Ai~~~m~ 247 (353)
.+-.-||..+++ .+++|+|..+++.|.. ..... ...+..|++++...||+.+-.|+...+.
T Consensus 149 ~aD~~FH~aIa~---as~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~am~~hl~ 225 (241)
T COG2186 149 EADLAFHLAIAE---ASGNPVLLLLLEALWDLLRRSVRASTLAALARDETVVLEEHRAIVDAIAAGDPDAAREAMRAHLE 225 (241)
T ss_pred HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHhhchhhcccccchhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445778999666 5889999999886550 11122 5778889999999999999998888775
No 81
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=51.12 E-value=2.7e+02 Score=28.01 Aligned_cols=116 Identities=16% Similarity=-0.004 Sum_probs=72.7
Q ss_pred hhhhhhhhHHHHhHHHHhcCCChHHhHHH-HH-HHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHH
Q 018588 127 TAEENRHGDLLNKYLYLSGRVDMKQIEKS-IQ-YLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHGDMK 204 (353)
Q Consensus 127 tAEEnRHg~aL~~YL~~sg~vDp~~lE~~-~~-~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPv 204 (353)
..+|.-||..|-.|+--=|.-+.+.+... +. .-..+-|+.+. .+=....+-..|...+-.+.+.. |.. +.++.
T Consensus 81 aqDelGHa~~ly~~aeeLG~~r~e~~~a~~r~~~~f~n~fe~P~-~dwAdtvvr~~L~D~a~~~~~~~---L~~-sSy~p 155 (314)
T PRK13778 81 VQDEAGHGLYLYSAAETLGVSREELIDDLLSGKAKYSSIFNYPT-LTWADVGVIGWLVDGAAIMNQVP---LCR-CSYGP 155 (314)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcchHHhcccccCCC-CCHHHHHHHHHHHHHHHHHHHHH---Hhc-CCcHH
Confidence 45778899999999932255444433322 11 11122244443 23344555555666555554444 443 77999
Q ss_pred HHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh---hHHHHHHHHHh
Q 018588 205 LAQICGTIASDEKRHETAYTKIVEKLFEIDPD---DTILALAGMMK 247 (353)
Q Consensus 205 L~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd---~a~~Ai~~~m~ 247 (353)
|+.++.+|-+.|.-|..+=...|.++-+-.++ .+-.||.....
T Consensus 156 lA~~a~Ki~KEe~yH~rhg~~wl~rL~~GT~esr~r~Q~Ald~~Wp 201 (314)
T PRK13778 156 YARAMVRICKEESFHQRQGEEILLALARGTPAQKQMAQDALNRWWW 201 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999764442 34445555443
No 82
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=49.08 E-value=34 Score=31.36 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=33.8
Q ss_pred HHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh
Q 018588 193 TARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 232 (353)
Q Consensus 193 ~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le 232 (353)
.+..|+..|+.-.+.-...++.||++|...|+..++.+.+
T Consensus 92 ~ae~A~~~g~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~~ 131 (166)
T COG1592 92 FAEVAEEEGFKEAARSFRAAAKAEKRHAEMFRGLLERLEE 131 (166)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445667888889999999999999999999999988754
No 83
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=48.63 E-value=46 Score=28.41 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=38.4
Q ss_pred hhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHH
Q 018588 182 QERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 182 qE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
-|.....-|.+.+..++..+-|.++..+..+|.||..|..-+.+.+..
T Consensus 16 ~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 16 GELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777889999999999999999999888777754
No 84
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=48.14 E-value=40 Score=30.73 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=31.4
Q ss_pred hCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChh
Q 018588 200 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 237 (353)
Q Consensus 200 ~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~ 237 (353)
.++|.++..+...+..|.+|...|.+.+.+ +..-|.-
T Consensus 26 ~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~-~~~rps~ 62 (165)
T cd01042 26 ARDPAVRPLIKEMLDEEKDHLAWFEELLPE-LGVRPSL 62 (165)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCch
Confidence 578999999999999999999999999965 4445544
No 85
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=44.62 E-value=39 Score=33.38 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=25.6
Q ss_pred HHHHHHHhHhhhhhhHhHHHHHHHHHHH
Q 018588 203 MKLAQICGTIASDEKRHETAYTKIVEKL 230 (353)
Q Consensus 203 PvL~~I~~~IA~DE~RH~~~Y~~iv~~~ 230 (353)
|-.+..+...+.+|++|..+|.++++.+
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l 122 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAV 122 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999754
No 86
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=43.74 E-value=83 Score=30.33 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=29.1
Q ss_pred hCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh
Q 018588 200 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 232 (353)
Q Consensus 200 ~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le 232 (353)
.+.|-.+..++..+.+|++|..+|..+++.+..
T Consensus 75 ~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~ 107 (280)
T cd07911 75 EGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGV 107 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 457888999999999999999999999988743
No 87
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=43.48 E-value=56 Score=26.62 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=29.8
Q ss_pred HhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 190 HGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 190 y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
|.++|+=|...||+|+++=|- -|.-+|.+|+...-
T Consensus 42 Y~~LArDA~ssGDrV~aEny~-------QHAeHY~Ril~~~~ 76 (80)
T PF13763_consen 42 YNQLARDAQSSGDRVLAENYL-------QHAEHYFRILAAAQ 76 (80)
T ss_pred HHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 888899888899999998775 68999999987643
No 88
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=43.42 E-value=45 Score=26.70 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=34.9
Q ss_pred HHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhhh
Q 018588 286 DILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAK 335 (353)
Q Consensus 286 ~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~~~~~~~~ 335 (353)
-++-|-..+|+... |||++- ++-|..|-.+.+|++||.+-|||.=
T Consensus 21 WL~lHY~sk~~~~~--gLs~~d---~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 21 WLILHYRSKWKSSQ--GLSEED---EQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHhcccCC--CCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888654 898553 5578899999999999999888864
No 89
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=42.07 E-value=46 Score=31.82 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=29.8
Q ss_pred hCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh
Q 018588 200 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 232 (353)
Q Consensus 200 ~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le 232 (353)
.+.|-.+..++..+.+|+.|-.+|..+++.+..
T Consensus 74 ~~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~ 106 (288)
T cd01049 74 VQIPEARAFYGFQAFMENIHSESYSYILDTLGK 106 (288)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999987753
No 90
>PRK13456 DNA protection protein DPS; Provisional
Probab=41.26 E-value=3.1e+02 Score=25.71 Aligned_cols=114 Identities=10% Similarity=0.023 Sum_probs=65.1
Q ss_pred hHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhcc-CCC
Q 018588 175 GFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF-RMP 253 (353)
Q Consensus 175 ~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~-~MP 253 (353)
.|.-..--|..+..+|...+..++...-+.++..+..-+.||-.|+.....=+.. |.=.|+.-..-+..+...++ ..|
T Consensus 24 lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~q-LGG~P~~~p~~~~~ls~~~~~~~p 102 (186)
T PRK13456 24 LLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYE-LGGKLPRDIREFHDISACPDAYLP 102 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHHhhhhcCccccCC
Confidence 3333444688889999988888755445666789999999999999887643322 23333333333333332222 111
Q ss_pred Ccc-----CCC---CCcchhhhhHHHHHHHhCCCChhcHHHHHH
Q 018588 254 GHF-----MYD---GQDDKIFDHFSAVTQRLGVYTGHDYADILE 289 (353)
Q Consensus 254 ~~~-----m~d---~~~~~lf~~~a~~a~~~GiY~~~~y~~Il~ 289 (353)
... |-. -....+.+.|..+++.+|--|+.+|.-+++
T Consensus 103 ~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~ 146 (186)
T PRK13456 103 ENPTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALA 146 (186)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 110 000 012356677778877777767766653333
No 91
>PRK09458 pspB phage shock protein B; Provisional
Probab=39.99 E-value=45 Score=26.83 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhhhc
Q 018588 288 LEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAKK 336 (353)
Q Consensus 288 l~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~~~~~~~~~ 336 (353)
+-|-..+|+... |||++ -+.-|..|-.+++|+++|.+-|||.=.
T Consensus 23 ~LHY~sk~~~~~--~Ls~~---d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 23 WLHYRSKRQGSQ--GLSQE---EQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred HHhhcccccCCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344456787775 89865 345688899999999999998888643
No 92
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=38.52 E-value=1.2e+02 Score=25.68 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=45.6
Q ss_pred hhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHH
Q 018588 183 ERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILAL 242 (353)
Q Consensus 183 E~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai 242 (353)
|......|.+.....+..+.+.++..+..++.+|..|...+.+.+.. +.-.|...+..+
T Consensus 18 e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~-lGg~p~~~~~~~ 76 (148)
T cd01052 18 EWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYE-LGGTPPRDPKDW 76 (148)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHH
Confidence 44445567776666666778889999999999999999999888876 777787766444
No 93
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=35.30 E-value=78 Score=28.30 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=42.4
Q ss_pred HHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHh
Q 018588 177 VYTSFQERATFISHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 232 (353)
Q Consensus 177 vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le 232 (353)
.-.++-|..+.+-|-.-+-.. ..+|.++.++..||.+|..|...+...+..+.+
T Consensus 29 ~gG~~gEl~ai~qYl~q~~~~--~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~ 82 (156)
T cd01051 29 LGGAFGELSAAMQYLFQSFNF--REDPKYRDLLLDIGTEELSHLEMVATLIAMLLK 82 (156)
T ss_pred hCCccHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334556777777776644432 178999999999999999999999999988776
No 94
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=34.92 E-value=72 Score=25.53 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=34.5
Q ss_pred HHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhhhhhhhhh
Q 018588 286 DILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKALVDTAK 335 (353)
Q Consensus 286 ~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~~~~~~~~ 335 (353)
-++.|-..+|+... |||++ -++-|..|-.+++|+++|.+-|||.-
T Consensus 21 wl~lHY~~k~~~~~--~ls~~---d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T TIGR02976 21 WLILHYRSKRKTAA--SLSTD---DQALLQELYAKADRLEERIDTLERIL 65 (75)
T ss_pred HHHHHHHhhhccCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888874 77765 33467788999999999999888864
No 95
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=34.44 E-value=53 Score=32.28 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=31.8
Q ss_pred CHHH--HHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHH
Q 018588 202 DMKL--AQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILAL 242 (353)
Q Consensus 202 dPvL--~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai 242 (353)
-|.| +-++.+|..||..|-..|+++.+.+.-..+++.+...
T Consensus 45 AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~ 87 (265)
T COG3396 45 APTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYL 87 (265)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 5666 5578899999999999999999988755555544443
No 96
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=33.39 E-value=4.9e+02 Score=25.75 Aligned_cols=118 Identities=16% Similarity=0.056 Sum_probs=83.4
Q ss_pred hchhhhhhhhHHHHhHH-HHhcCCChHHhHHHHHH-HHHh-CCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhhhC
Q 018588 125 AWTAEENRHGDLLNKYL-YLSGRVDMKQIEKSIQY-LIRS-GMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKKHG 201 (353)
Q Consensus 125 ~WtAEEnRHg~aL~~YL-~~sg~vDp~~lE~~~~~-~i~~-G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~~g 201 (353)
.=.-.|-.||..|=.++ .+-|.-+-+.+...+.- +..+ =|+.+. .+=..+++.+.++..+--..-.++.+ |.
T Consensus 56 ~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g~~k~n~~~n~P~-~~Wadt~~~~fLvD~~~~~~l~~l~~----ss 130 (265)
T COG3396 56 NIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDGRHKRNSLFNLPT-GDWADTIVRGFLVDGAAIYQLEALAD----SS 130 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHHHHHHHHcCCC-ccHHHHHHHHHHHhHHHHHHHHHHHh----cc
Confidence 34457889999988888 33344444444444331 2222 233333 35556899999999998887777555 67
Q ss_pred CHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCCh---hHHHHHHHHHh
Q 018588 202 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD---DTILALAGMMK 247 (353)
Q Consensus 202 dPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd---~a~~Ai~~~m~ 247 (353)
.+-|++|..+|-+-|.-|-.|=++.+.++-+=.+. -+..||-.-..
T Consensus 131 y~PlA~~a~k~~kEe~fHl~~~~~~l~~l~~gT~~~~~~~Q~AlN~wwp 179 (265)
T COG3396 131 YGPLARAAQKICKEEEFHLRHGKTWLKRLANGTEESRQMAQAALNRWWP 179 (265)
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887774 44566666554
No 97
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=33.30 E-value=69 Score=26.30 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=28.6
Q ss_pred hhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhcc
Q 018588 216 EKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRF 250 (353)
Q Consensus 216 E~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~ 250 (353)
|.+|..+|.++... |.+.|+.+...|..|+++-|
T Consensus 9 e~~~~~~f~~~~~~-l~~~~~~~~~~f~~Va~~lf 42 (100)
T smart00337 9 NKRYERAFSSFSAQ-LHVTPGTAIELFGEVATELF 42 (100)
T ss_pred HHHHHHHHHHHHHH-hCCCcccHHHHHHHHHHHHH
Confidence 78899999999888 77789999999999997433
No 98
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=32.59 E-value=1e+02 Score=31.30 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=34.6
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChh
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 237 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~ 237 (353)
+......|-++..++..+.-|+.|..+|+.+++.+. .+++.
T Consensus 121 l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e 161 (369)
T PRK07209 121 IYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGE 161 (369)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Confidence 344577999999999999999999999999999883 45655
No 99
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.44 E-value=4e+02 Score=26.18 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=50.6
Q ss_pred HHHHHhhhCCHHHHHHHhHhhhhhhHhHH---HHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCccCCCCCcchhhhhH
Q 018588 193 TARLVKKHGDMKLAQICGTIASDEKRHET---AYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHF 269 (353)
Q Consensus 193 ~arla~~~gdPvL~~I~~~IA~DE~RH~~---~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~MP~~~m~d~~~~~lf~~~ 269 (353)
.+|++ ++||-.-..|+..|=.||.-|-+ -+++++.+=-..|| +.-|...+++.+.-|-.. . |
T Consensus 180 ~aK~~-~~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~r~gldp---~~~FreL~r~y~~~~lkg--~---------~ 244 (268)
T COG2833 180 RAKLA-ETGDSEAAAILDIILRDEIGHVAIGNKWYRFLCARRGLDP---AATFRELVRAYFRFILKG--P---------F 244 (268)
T ss_pred HHHHH-HcCchHHHHHHHHHHhccccceeechHHHHHHHHhcCCCh---HHHHHHHHHHhCCcccCC--c---------c
Confidence 35555 48888889999999999999964 45555544445555 666777776444433222 1 2
Q ss_pred HHHHHHhCCCChhcHHHH
Q 018588 270 SAVTQRLGVYTGHDYADI 287 (353)
Q Consensus 270 a~~a~~~GiY~~~~y~~I 287 (353)
-..|+.-..+|+..|..|
T Consensus 245 N~~AR~~AGfT~~e~d~i 262 (268)
T COG2833 245 NIDARAKAGFTQSEYDSI 262 (268)
T ss_pred cHHHHHHcCCCHHHHHHH
Confidence 233444456788777655
No 100
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=31.31 E-value=1.3e+02 Score=29.52 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=30.9
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHH
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 230 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~ 230 (353)
+.....+|-.+..++.++..|+.|..+|+.+++.+
T Consensus 81 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl 115 (324)
T PRK09614 81 LMPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTL 115 (324)
T ss_pred HHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 43457789999999999999999999999999975
No 101
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=2.3e+02 Score=23.86 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHhhhhhHH-HHhhHHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 177 VYTSFQERATFI-SHGNTARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 177 vy~~fqE~AT~i-~y~n~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
+-+|+-|-+-++ +|.. .+.++.||.|+.|+.+=..||.-|+..-...+.
T Consensus 22 a~~SLiEEiEA~~wY~q---R~~~tKD~~~r~ImehnrdeE~eHa~mlLEwlr 71 (103)
T COG3461 22 ARQSLIEEIEAMMWYDQ---RADATKDEDLRAIMEHNRDEEKEHAAMLLEWLR 71 (103)
T ss_pred HHHHHHHHHHHHHHHHH---HhhccccHhHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345555555444 3443 344588999999999999999999988766654
No 102
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=30.24 E-value=1.1e+02 Score=29.18 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=30.1
Q ss_pred hhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhccC
Q 018588 216 EKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFR 251 (353)
Q Consensus 216 E~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~ 251 (353)
|.+|..+|.++.+. |.+.|+.+-..|..|+.+-|.
T Consensus 79 e~~~~~~f~~m~~q-L~it~~~a~~~F~~Va~elF~ 113 (213)
T TIGR00865 79 ERRYRRAFSDMTSQ-LHITPFTARQSFFQVAAELFR 113 (213)
T ss_pred HHHHHHHHHHHHHH-hCCCCccHHHHHHHHHHHHhc
Confidence 78999999999988 888899999999999974443
No 103
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=27.54 E-value=48 Score=32.20 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=17.9
Q ss_pred HhHhhhhhhHhHHHHHHHHHH
Q 018588 209 CGTIASDEKRHETAYTKIVEK 229 (353)
Q Consensus 209 ~~~IA~DE~RH~~~Y~~iv~~ 229 (353)
.-++|.||.||+..+.+-++.
T Consensus 104 ~~~va~dEarHf~ll~~rL~~ 124 (253)
T PF04305_consen 104 WLRVADDEARHFRLLRERLEE 124 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999874
No 104
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=26.72 E-value=1.6e+02 Score=28.41 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.4
Q ss_pred CHHHHHHHhHhhhhhhHhHHHHHHHHHHHH
Q 018588 202 DMKLAQICGTIASDEKRHETAYTKIVEKLF 231 (353)
Q Consensus 202 dPvL~~I~~~IA~DE~RH~~~Y~~iv~~~l 231 (353)
++...+-+.....||.+|..+|.++++++-
T Consensus 111 ~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 111 DDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777788999999999999999877
No 105
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=26.29 E-value=90 Score=26.87 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=41.1
Q ss_pred HHHhHHHHhcCCChHHhHHHHHHH---HHhCCCCCCC-CCchhhHHHHHHhhhhhHHHHhhHHHHHhhhCCHHHHHHHhH
Q 018588 136 LLNKYLYLSGRVDMKQIEKSIQYL---IRSGMDPKFE-NNPYNGFVYTSFQERATFISHGNTARLVKKHGDMKLAQICGT 211 (353)
Q Consensus 136 aL~~YL~~sg~vDp~~lE~~~~~~---i~~G~~~~~~-~~p~~~~vy~~fqE~AT~i~y~n~arla~~~gdPvL~~I~~~ 211 (353)
-|.+||+-.++++.++++.+...+ ...-|..... .+|..+-.|+|+ ++ |. ...-||+|.+.|..
T Consensus 11 Fl~~~l~~~~~l~~~~~~~F~~~L~~~L~~ry~~HW~P~~P~kGsayRcI-----ri---n~----~~~~Dp~l~~Aa~~ 78 (118)
T PF07742_consen 11 FLTRLLYNKGRLPRRQVDRFAEELENLLCERYKGHWYPENPSKGSAYRCI-----RI---NP----GHKMDPVLEQAAKE 78 (118)
T ss_dssp HHHHHHHHHC-B-HHHHHHHHHHHHHHHHHHHTTS--TTSTTTTHHHH-E-----EE---S------SSB-HHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCceEEE-----EE---cC----CCCCCHHHHHHHHH
Confidence 478899999999999988874432 3334544332 489999999999 22 11 12349999999887
Q ss_pred hhhh
Q 018588 212 IASD 215 (353)
Q Consensus 212 IA~D 215 (353)
..-+
T Consensus 79 sgl~ 82 (118)
T PF07742_consen 79 SGLS 82 (118)
T ss_dssp TT--
T ss_pred hCCC
Confidence 5543
No 106
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=25.91 E-value=1.4e+02 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=24.4
Q ss_pred hhHhHHHHHHHHHHHHhhCChhHHHHHHHHHh
Q 018588 216 EKRHETAYTKIVEKLFEIDPDDTILALAGMMK 247 (353)
Q Consensus 216 E~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~ 247 (353)
|.+|..+|.++++.+.-..|+.+...|..++.
T Consensus 9 e~~~~~~f~~~~~~l~~~~~~~~~~~f~~v~~ 40 (101)
T PF00452_consen 9 ERKYEDFFENMLNQLNINTPDNAYETFNEVAE 40 (101)
T ss_dssp HHHHHHHHHHHHHHHCSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 66788888888887766577667777888776
No 107
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=25.66 E-value=2.5e+02 Score=26.22 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=40.2
Q ss_pred hhHHHHhhHHHHHhhhCCHHHHHHHhHhhhh----------------h--hHhHHHHHHHHHHHHhhCChhHHHHHHHHH
Q 018588 185 ATFISHGNTARLVKKHGDMKLAQICGTIASD----------------E--KRHETAYTKIVEKLFEIDPDDTILALAGMM 246 (353)
Q Consensus 185 AT~i~y~n~arla~~~gdPvL~~I~~~IA~D----------------E--~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m 246 (353)
+-.-||..+.+ .+|+|+|..++..+..- + ..-.....++++++...|++.+..++...+
T Consensus 141 ~d~~FH~~i~~---~s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~~~~~H~ 217 (253)
T PRK10421 141 ADVRFHLAIAE---ASHNVVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSQLTEQHQAVMDAILAGDAEGARKAMMAHL 217 (253)
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34678888555 58899988877655321 1 111345777888888888888777777666
Q ss_pred h
Q 018588 247 K 247 (353)
Q Consensus 247 ~ 247 (353)
.
T Consensus 218 ~ 218 (253)
T PRK10421 218 S 218 (253)
T ss_pred H
Confidence 4
No 108
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=24.15 E-value=5.7e+02 Score=23.56 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=67.0
Q ss_pred CchhHHHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCC-CCC-CCCchhhHHHHHHhhhhhHHHHhh
Q 018588 115 SLTSWATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMD-PKF-ENNPYNGFVYTSFQERATFISHGN 192 (353)
Q Consensus 115 ~~~~w~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~-~~~-~~~p~~~~vy~~fqE~AT~i~y~n 192 (353)
+-++.+.|++.=+.||..|+.-|=+|+.-+|. +|.- .+.+ |.. ..+|...|--+-=+|.--..+=.+
T Consensus 35 ~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~-~~~l----------~~I~~P~~~~~s~~e~f~~tlehEq~vt~~I~~ 103 (167)
T COG1528 35 SLPGFAKFLRAQAQEELTHAMKLFNYLNERGA-RPEL----------KAIEAPPNKFSSLKELFEKTLEHEQKVTSSINE 103 (167)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Ccee----------cCcCCCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999965333 2211 1111 111 146777777777777766666677
Q ss_pred HHHHHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHH
Q 018588 193 TARLVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKL 230 (353)
Q Consensus 193 ~arla~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~ 230 (353)
++.+|...+|-.--.-++=-=++=..-++-+..|++++
T Consensus 104 L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~l~~~I~d~~ 141 (167)
T COG1528 104 LAEVAREEKDYATFNFLQWFVAEQVEEEKLFKTILDKL 141 (167)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666665555555544444445555566666554
No 109
>PF13668 Ferritin_2: Ferritin-like domain
Probab=24.07 E-value=2.4e+02 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=26.9
Q ss_pred hCCHHHHHHHhHhhhhhhHhHHHHHHHHH
Q 018588 200 HGDMKLAQICGTIASDEKRHETAYTKIVE 228 (353)
Q Consensus 200 ~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~ 228 (353)
..++..+.++..|+.+|..|..+.++.++
T Consensus 35 ~~~~~~~~~~~~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 35 ALDPEVRDLFQEIADQEQGHVDFLQAALE 63 (137)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999986
No 110
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=4.2e+02 Score=31.33 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=70.0
Q ss_pred CHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHhhccCCCCccCCCCCcchhhhhHHHHHHHhCCCCh
Q 018588 202 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDDTILALAGMMKKRFRMPGHFMYDGQDDKIFDHFSAVTQRLGVYTG 281 (353)
Q Consensus 202 dPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~~~~~MP~~~m~d~~~~~lf~~~a~~a~~~GiY~~ 281 (353)
+.++..+|..|+.-=.--.++=-.+++.+.-..|+..+.....-+- | .+| +...+.-+|=.
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL-----~----------sll----~ls~d~k~~~r 886 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELL-----P----------SLL----ALSHDHKIKVR 886 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHH-----H----------HHH----HHHHhhhHHHH
Confidence 4556777888877544444556667777777777776665543331 1 111 23444445555
Q ss_pred hcHHHHHHHHHhcccccccccCCHHHHHHHHHHhcchHHHHHHHHhhh
Q 018588 282 HDYADILEFLIERWKVEKLIGLTSEGRKAQDFVCGLPLRIRRILENKA 329 (353)
Q Consensus 282 ~~y~~Il~~ll~~W~i~~~~~L~~eg~~Ar~~l~~l~~r~~r~~er~~ 329 (353)
..-..+++.|+++.+++++.++-+ +-.+++=++|||..+|..
T Consensus 887 ~Kvr~LlekLirkfg~~eLe~~~p------ee~~klL~nIRK~r~R~~ 928 (1176)
T KOG1248|consen 887 KKVRLLLEKLIRKFGAEELESFLP------EEDMKLLTNIRKRRRRKK 928 (1176)
T ss_pred HHHHHHHHHHHHHhCHHHHHhhCH------HHHHHHHHHHHHHHHHhh
Confidence 566789999999999999999987 667777888999877765
No 111
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=22.05 E-value=7.7e+02 Score=24.29 Aligned_cols=119 Identities=23% Similarity=0.320 Sum_probs=59.3
Q ss_pred HHHHhhchhhhhhhhHHHHhHHHHhcCCChHHhHHHHHHHHHhCCCCCCCCCchhhHHHHHHhhhhhHHHHhhHHHHHhh
Q 018588 120 ATWIRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKSIQYLIRSGMDPKFENNPYNGFVYTSFQERATFISHGNTARLVKK 199 (353)
Q Consensus 120 ~~w~~~WtAEEnRHg~aL~~YL~~sg~vDp~~lE~~~~~~i~~G~~~~~~~~p~~~~vy~~fqE~AT~i~y~n~arla~~ 199 (353)
..+...|+..+ .+.++|+.+|++ +.-.|+++. +|+.+ .+..
T Consensus 85 ~~~~~~~~~~~-~~~~~l~~~LVL---------------~ADHgln~S-------t~aaR----------------v~AS 125 (282)
T cd06102 85 RRLARAWGLDP-AAADLLRRALVL---------------LADHELNAS-------TFAAR----------------VAAS 125 (282)
T ss_pred HHHHHHhcCCH-HHHHHHHHHHHH---------------HhccCCCcH-------HHHHH----------------HHhc
Confidence 44556777766 688999999965 222233221 22222 2223
Q ss_pred hCCHHHHHHHhHhhh-hhhHhHHHHHHHHHHHHhhC-ChhHHHHHHHHHhhccCCCCcc--CCCCCcchhhhhHHHHHHH
Q 018588 200 HGDMKLAQICGTIAS-DEKRHETAYTKIVEKLFEID-PDDTILALAGMMKKRFRMPGHF--MYDGQDDKIFDHFSAVTQR 275 (353)
Q Consensus 200 ~gdPvL~~I~~~IA~-DE~RH~~~Y~~iv~~~le~d-pd~a~~Ai~~~m~~~~~MP~~~--m~d~~~~~lf~~~a~~a~~ 275 (353)
++.+.-..+..-|++ .=-+|-.+=.+.++-+-++. +++.-..|+++++++-.+||.. .+...|+.. +.....+++
T Consensus 126 tgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa-~~L~~~~~~ 204 (282)
T cd06102 126 TGASLYAAVLAGLAALSGPRHGGATARVEALLDEALRAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRA-AALLAALRP 204 (282)
T ss_pred cCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhcCCccHHHHHHHHHHcCCcccCCCCCCCCCCCccH-HHHHHHHHH
Confidence 343333333333332 23344444433333222221 3355667888888888999764 443345432 333334445
Q ss_pred hCC
Q 018588 276 LGV 278 (353)
Q Consensus 276 ~Gi 278 (353)
.+.
T Consensus 205 ~~~ 207 (282)
T cd06102 205 LGP 207 (282)
T ss_pred Hhh
Confidence 443
No 112
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=21.96 E-value=2.6e+02 Score=25.44 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=39.2
Q ss_pred hHHHHhhHHHHHhhhCCHHHHHHHhHhhh----------------hhhHhHHHHHHHHHHHHhhCChhHHHHHHHHHh
Q 018588 186 TFISHGNTARLVKKHGDMKLAQICGTIAS----------------DEKRHETAYTKIVEKLFEIDPDDTILALAGMMK 247 (353)
Q Consensus 186 T~i~y~n~arla~~~gdPvL~~I~~~IA~----------------DE~RH~~~Y~~iv~~~le~dpd~a~~Ai~~~m~ 247 (353)
-.-||..+.. .+|+|.|..++..+.. +-........+|++++...|++.+..++...+.
T Consensus 135 d~~FH~~i~~---~s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~Ai~~~D~~~A~~~~~~hl~ 209 (221)
T PRK11414 135 NRLFRLAIYH---RSNMPILCEMIEQLWVRMGPSLHYLYEAINPAELREHIENYRLLLAALKAKDKEGCRHCLAEIMQ 209 (221)
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567777554 5788888776665521 111223445688888899999988888877775
No 113
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=21.69 E-value=99 Score=26.53 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHhCCCCh---hc---HHHHHHHHHhcccccccc-cCCHHHHHHHHHHhc
Q 018588 264 KIFDHFSAVTQRLGVYTG---HD---YADILEFLIERWKVEKLI-GLTSEGRKAQDFVCG 316 (353)
Q Consensus 264 ~lf~~~a~~a~~~GiY~~---~~---y~~Il~~ll~~W~i~~~~-~L~~eg~~Ar~~l~~ 316 (353)
.+|+.|-.+++-++-|.. .. |.+-++.|+++|+|+=-+ -|| +...|++.+-.
T Consensus 16 ~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LS-dD~~Ak~m~~q 74 (108)
T PF08855_consen 16 DIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELS-DDPEAKDMKEQ 74 (108)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHH
Confidence 567788888777776543 32 789999999999999443 888 77778887653
No 114
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=21.10 E-value=1.6e+02 Score=29.98 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=34.7
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHHHHHHHhhCChh
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDD 237 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~iv~~~le~dpd~ 237 (353)
+......|-++..++..+.-|+.|...|+.+++.+.. +|+.
T Consensus 96 ~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~-~~~e 136 (376)
T PRK09101 96 LLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVN-DPSV 136 (376)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHH
Confidence 3445779999999999999999999999999998855 5554
No 115
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=20.81 E-value=1.8e+02 Score=27.75 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhHHHHHhhhC-CHHHHHHHhHhhhhhhHhHHHHHHHHHHH
Q 018588 182 QERATFISHGNTARLVKKHG-DMKLAQICGTIASDEKRHETAYTKIVEKL 230 (353)
Q Consensus 182 qE~AT~i~y~n~arla~~~g-dPvL~~I~~~IA~DE~RH~~~Y~~iv~~~ 230 (353)
.|.+|-..|-. +-.+=..+ ......++..|+.+|.+|+..-.|++.++
T Consensus 7 lE~atip~YL~-a~ySi~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~al 55 (227)
T PF12902_consen 7 LELATIPPYLT-ALYSIKPGTNEEARNLIRSVAIEEMLHLSLAANLLNAL 55 (227)
T ss_dssp HHHHHHHHHHH-HHHHBS-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46666666643 21111122 33478999999999999999999999864
No 116
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=20.17 E-value=3.7e+02 Score=19.97 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=22.8
Q ss_pred HHhhhCCHHHHHHHhHhhhhhhHhHHHHHHH
Q 018588 196 LVKKHGDMKLAQICGTIASDEKRHETAYTKI 226 (353)
Q Consensus 196 la~~~gdPvL~~I~~~IA~DE~RH~~~Y~~i 226 (353)
.+-++.+|.|++++..|..++..+..--.++
T Consensus 23 a~~E~~np~lR~~l~~~~~~~~~~~~~l~~~ 53 (64)
T PF07875_consen 23 AALECANPELRQILQQILNECQQMQYELFNY 53 (64)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446889999999999999887654433333
No 117
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=20.16 E-value=1.4e+02 Score=22.18 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.0
Q ss_pred ccChHHHH-HHHHHHhcCCCHHHHHHHHHHhhh
Q 018588 60 SEGFYEQV-KELRERCKQLPAEHFVALVGEMIT 91 (353)
Q Consensus 60 ~~~F~~~~-~~lr~~~~~Lpd~~~v~lv~~~lT 91 (353)
-.+|-.++ .-|+.....|++++...+|.++|.
T Consensus 13 ~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 13 TKDFPQELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 45687764 448999999999999999998874
Done!