BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018589
(353 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255584888|ref|XP_002533159.1| RNA binding protein, putative [Ricinus communis]
gi|223527031|gb|EEF29218.1| RNA binding protein, putative [Ricinus communis]
Length = 532
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 270/336 (80%), Positives = 294/336 (87%), Gaps = 10/336 (2%)
Query: 1 MELSSSFASLVS-DNISFSSAISPFPLQSSLKTLKLTKPTS--QNLRILAVAVEPQQ--D 55
MELSSSF ISF+S+ SPF LQ LK KP NLR+LAVA++P Q +
Sbjct: 1 MELSSSFTHFTKISEISFTSSFSPFALQIHLK-----KPIKFPPNLRVLAVAIDPPQPQE 55
Query: 56 LPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLL 115
LP NSPQ+LLKELAERKK+TSPKKKVPPK+FIL+PPLDDKKL RFL SPQLSLK FPLL
Sbjct: 56 LPQNSPQRLLKELAERKKITSPKKKVPPKRFILKPPLDDKKLAQRFLNSPQLSLKQFPLL 115
Query: 116 SSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFC 175
SSCLP SRLN+ D+TWIDEYLLEAKQALGYSLEPSD GDDNPAK FDTLLYLAFQHP C
Sbjct: 116 SSCLPSSRLNSVDKTWIDEYLLEAKQALGYSLEPSDNFGDDNPAKQFDTLLYLAFQHPSC 175
Query: 176 ERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWI 235
ER ARHV+ GHSRLCFLGQ+VLELAFCEFFLQRYPRESPAPMRERVF LIG+RNLPKWI
Sbjct: 176 ERTNARHVKYGHSRLCFLGQYVLELAFCEFFLQRYPRESPAPMRERVFALIGKRNLPKWI 235
Query: 236 KAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295
KAASLQNLIFP+D++D+L+RK+REPPVKSVFWALFGAIYLCFG PEVYRVLFEVFGMDPE
Sbjct: 236 KAASLQNLIFPYDDIDKLLRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPE 295
Query: 296 DKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
++CQPKLRRQLEDVDYVSVEFEGNKL+WQDVAAYK
Sbjct: 296 AEDCQPKLRRQLEDVDYVSVEFEGNKLSWQDVAAYK 331
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 12/206 (5%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P+ +L + P L +C+PP W + + + LGY L SD++ D A++
Sbjct: 331 KPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPKVMKTLGYPLAMSDRIPDITEARN 390
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP + K H R + RL F+GQ + +L E L ++ ++
Sbjct: 391 IELGLGLQLCFLHP--SKYKFEHPRFCYERLEFVGQKIQDLVLAERLLMKHLDAPGKWLQ 448
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI---RKEREPPVKSVFWALFGAIYLC 276
ER L+ + ++++ L + I +++ R+ R P +V AL G Y
Sbjct: 449 ERHRRLLMNKFCGRYLRDKHLHHFIVYSEQVIDAYENNRRLRNPATTAVQQALHGLSYTV 508
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPK 302
+G P+V R++FEVF + + QPK
Sbjct: 509 YGKPDVRRLMFEVFDFE----QIQPK 530
>gi|224074235|ref|XP_002304313.1| predicted protein [Populus trichocarpa]
gi|222841745|gb|EEE79292.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/335 (80%), Positives = 297/335 (88%), Gaps = 6/335 (1%)
Query: 1 MELSSSFASL--VSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPH 58
MELSSSF+ L +SD ISFSS+ +PFPLQ ++ LK T QNL + AVA++PQ+ LP
Sbjct: 1 MELSSSFSQLPKISD-ISFSSSCAPFPLQ--IRYLKPHHKTLQNLGVFAVAIDPQE-LPK 56
Query: 59 NSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSC 118
NSPQ+LLKELAERKK TSPKK++PPK+FIL+PPLDDK+L RFL SPQLSLK FPLLSSC
Sbjct: 57 NSPQRLLKELAERKKTTSPKKRIPPKRFILKPPLDDKRLAQRFLNSPQLSLKQFPLLSSC 116
Query: 119 LPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERN 178
LP SRLNNADQTWIDEYLLEAKQALGY LEPSD+ GDDNPAK FDTLLYLAFQHP CER
Sbjct: 117 LPSSRLNNADQTWIDEYLLEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPSCERT 176
Query: 179 KARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA 238
ARHVR+GHSRLCFLGQ+VLELAF E+FLQRYPRESPAP+RERVFGLIG+RNLPKWIKAA
Sbjct: 177 NARHVRSGHSRLCFLGQYVLELAFAEYFLQRYPRESPAPLRERVFGLIGKRNLPKWIKAA 236
Query: 239 SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE 298
SL NLIFP+D MD+L RKEREPPVKSVFWA+FGAIYLCFG PEVYRVLFEVF MDPE ++
Sbjct: 237 SLHNLIFPYDNMDKLQRKEREPPVKSVFWAVFGAIYLCFGMPEVYRVLFEVFEMDPEAED 296
Query: 299 CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKAS 333
CQPKLRRQ EDVDYVSVEFEG +L+WQDVAAYKAS
Sbjct: 297 CQPKLRRQFEDVDYVSVEFEGKQLSWQDVAAYKAS 331
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 12/205 (5%)
Query: 105 PQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD 163
P+ +L + P L +C+PP W E + LGY L D++ D A++ +
Sbjct: 336 PEDALFAHPRLFRACVPPGMHRFRGNIWDYESRPHVMRTLGYPLTMRDRIPDITKARNIE 395
Query: 164 --TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
L L F HP K H R + RL ++GQ + ++ E L ++ ++E+
Sbjct: 396 LGLGLQLCFLHP--SNYKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQEK 453
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI---RKEREPPVKSVFWALFGAIYLCFG 278
++ + ++++ L I D++ R+ R P +V +L G Y +G
Sbjct: 454 HRRVLMNKFCGRYLREKHLHKYITYADKVQDAYEHNRRLRNPSTTAVNHSLHGLSYTIYG 513
Query: 279 FPEVYRVLFEVFGMDPEDKECQPKL 303
P+V R++F+VF + + QPKL
Sbjct: 514 KPDVRRLMFDVFDFE----QTQPKL 534
>gi|449510992|ref|XP_004163832.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101231265 [Cucumis sativus]
Length = 534
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/333 (76%), Positives = 291/333 (87%), Gaps = 2/333 (0%)
Query: 1 MELSSSFASLVSD--NISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPH 58
MELSSSF L S N SFSS+++PF ++ P+S NLR+ AVAV+PQQ+LP
Sbjct: 1 MELSSSFVKLSSPSPNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPK 60
Query: 59 NSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSC 118
N+PQ+LLKELAERK+ TSPKKKVPP++FILRPPLDDK+L +RFL SPQL+LKSFPLLSSC
Sbjct: 61 NNPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSC 120
Query: 119 LPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERN 178
LP SRLNNAD+TW+DEYLLEAKQALGY LEPSD GDDNPAK FDTLLYLAFQHP CER
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
Query: 179 KARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA 238
KARH+R+GHSRL FLGQ+VLELA E+FLQRYPRESP PMRERVF LIG+RNLPKWIKAA
Sbjct: 181 KARHIRSGHSRLXFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAA 240
Query: 239 SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE 298
SLQNLIFP+D+MD++IRK+REPPVKSVFWALFGAIYLCFG PEVYRVLFEVFGMDP+ KE
Sbjct: 241 SLQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKE 300
Query: 299 CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
C+P+LRRQLEDVDYVSVEFE ++ WQD+ +YK
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYK 333
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P+ +L + P L +C+PP W + + QALGY L +D++ D A++
Sbjct: 333 KPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPLPVTDKIPDITEARN 392
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP ++K H R + RL +LGQ + ++ E L ++ ++
Sbjct: 393 IELGLGLQLCFLHP--SKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGRWLQ 450
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI---RKEREPPVKSVFWALFGAIYLC 276
+ L+ + ++++ L LI +++ R+ R P +V AL G Y+
Sbjct: 451 VKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVV 510
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPK 302
+G P+V R++FEVF + + QPK
Sbjct: 511 YGKPDVRRIMFEVFDFE----QIQPK 532
>gi|225438954|ref|XP_002284222.1| PREDICTED: uncharacterized protein LOC100254381 [Vitis vinifera]
Length = 542
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/339 (79%), Positives = 295/339 (87%), Gaps = 9/339 (2%)
Query: 1 MELSSSFA--------SLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEP 52
MELSS F S ++ ++SFSS+ SPFPLQ LK K T PTS RILAVAV+P
Sbjct: 1 MELSSPFIHRQKPNPYSCLTPDLSFSSSFSPFPLQIDLKNSKSTNPTSLKFRILAVAVDP 60
Query: 53 QQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSF 112
++ LP NSPQ+LLKELAERKK+TSPKKK PPK+FIL+PPLDD +L RFL SPQLSLKSF
Sbjct: 61 KE-LPQNSPQRLLKELAERKKITSPKKKFPPKRFILKPPLDDARLARRFLNSPQLSLKSF 119
Query: 113 PLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQH 172
PLLSSCLP SRLNNAD+ WIDEYLLEAKQALGY LEPSDQ GDDNPAK FD LLYLAFQH
Sbjct: 120 PLLSSCLPSSRLNNADKAWIDEYLLEAKQALGYPLEPSDQYGDDNPAKQFDALLYLAFQH 179
Query: 173 PFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLP 232
P C+R ARHVR+GHSRL FLGQ+VLELAF E+FLQRYPRESPAPMRERVF LIG+RNLP
Sbjct: 180 PSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVFELIGKRNLP 239
Query: 233 KWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292
+WIKAASLQNL+FPFD+MDRLIRKEREPPVKSVFWALFGAIYLC+G PEVYRVLFEVFGM
Sbjct: 240 QWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVYRVLFEVFGM 299
Query: 293 DPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
DPE ++CQPKLRRQLEDVDYVSVEFE NKL+WQDVAAYK
Sbjct: 300 DPEHEDCQPKLRRQLEDVDYVSVEFENNKLSWQDVAAYK 338
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 10/208 (4%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P+ +L + P L +C+PP W + + ALGY L +D++ D A++
Sbjct: 338 KPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDCRPQVMHALGYPLPVTDRIPDITKARN 397
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP ++K H R + RL ++GQ + ++ E L ++ ++
Sbjct: 398 IELGLGLQLCFLHP--SKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 455
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI---RKEREPPVKSVFWALFGAIYLC 276
E+ L+ + ++++ L I +++ R+ R P +V A+ G YL
Sbjct: 456 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNRRLRNPATTAVQQAIHGLSYLV 515
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPKLR 304
+G P+V R++FEVF D E + +P LR
Sbjct: 516 YGKPDVRRLMFEVF--DFEQIQPKPVLR 541
>gi|449448248|ref|XP_004141878.1| PREDICTED: uncharacterized protein LOC101207336 [Cucumis sativus]
Length = 533
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/332 (75%), Positives = 288/332 (86%), Gaps = 1/332 (0%)
Query: 1 MELSSSFASLVSDNISFSSA-ISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPHN 59
MELSSSF L S + S+ ++PF ++ P+S NLR+ AVAV+PQQ+LP N
Sbjct: 1 MELSSSFVKLSSPSNYSFSSSLTPFIVKIHPNHPIFPNPSSANLRVFAVAVDPQQELPKN 60
Query: 60 SPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCL 119
+PQ+LLKELAERK+ TSPKKKVPP++FILRPPLDDK+L +RFL SPQL+LKSFPLLSSCL
Sbjct: 61 NPQRLLKELAERKRATSPKKKVPPRRFILRPPLDDKRLAERFLNSPQLTLKSFPLLSSCL 120
Query: 120 PPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK 179
P SRLNNAD+TW+DEYLLEAKQALGY LEPSD GDDNPAK FDTLLYLAFQHP CER K
Sbjct: 121 PSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTK 180
Query: 180 ARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS 239
ARH+R+GHSRL FLGQ+VLELA E+FLQRYPRESP PMRERVF LIG+RNLPKWIKAAS
Sbjct: 181 ARHIRSGHSRLFFLGQYVLELALAEYFLQRYPRESPGPMRERVFALIGKRNLPKWIKAAS 240
Query: 240 LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKEC 299
LQNLIFP+D+MD++IRK+REPPVKSVFWALFGAIYLCFG PEVYRVLFEVFGMDP+ KEC
Sbjct: 241 LQNLIFPYDDMDKIIRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAKEC 300
Query: 300 QPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
+P+LRRQLEDVDYVSVEFE ++ WQD+ +YK
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKRIGWQDMVSYK 332
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P+ +L + P L +C+PP W + + QALGY L +D++ D A++
Sbjct: 332 KPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPLPVTDKIPDITEARN 391
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP ++K H R + RL +LGQ + ++ E L ++ ++
Sbjct: 392 IELGLGLQLCFLHP--SKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGRWLQ 449
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI---RKEREPPVKSVFWALFGAIYLC 276
+ L+ + ++++ L LI +++ R+ R P +V AL G Y+
Sbjct: 450 VKHRRLLMNKFCGRYLRERYLHKLIIYSEKVQDAYENNRRLRNPATTAVQQALHGLSYVV 509
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPK 302
+G P+V R++FEVF + + QPK
Sbjct: 510 YGKPDVRRIMFEVFDFE----QIQPK 531
>gi|147815305|emb|CAN72245.1| hypothetical protein VITISV_028705 [Vitis vinifera]
Length = 518
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/331 (79%), Positives = 287/331 (86%), Gaps = 9/331 (2%)
Query: 1 MELSSSFA--------SLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEP 52
MELSS F S ++ ++SFSS+ SPFPLQ LK K T PTS RILAVAV+P
Sbjct: 1 MELSSPFIHRQKPNPYSCLTPDLSFSSSFSPFPLQIDLKNSKSTNPTSLKFRILAVAVDP 60
Query: 53 QQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSF 112
++ LP NSPQ+LLKELAERKK+TSPKKK PPK+FIL+PPLDD +L RFL SPQLSLKSF
Sbjct: 61 KE-LPQNSPQRLLKELAERKKITSPKKKFPPKRFILKPPLDDARLARRFLNSPQLSLKSF 119
Query: 113 PLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQH 172
PLLSSCLP SRLNNAD+ WIDEYLLEAKQALGY LEPSDQ GDDNPAK FD LLYLAFQH
Sbjct: 120 PLLSSCLPSSRLNNADKAWIDEYLLEAKQALGYPLEPSDQYGDDNPAKQFDALLYLAFQH 179
Query: 173 PFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLP 232
P C+R ARHVR+GHSRL FLGQ+VLELAF E+FLQRYPRESPAPMRERVF LIG+RNLP
Sbjct: 180 PSCDRANARHVRSGHSRLWFLGQYVLELAFAEYFLQRYPRESPAPMRERVFELIGKRNLP 239
Query: 233 KWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292
+WIKAASLQNL+FPFD+MDRLIRKEREPPVKSVFWALFGAIYLC+G PEVYRVLFEVFGM
Sbjct: 240 QWIKAASLQNLVFPFDDMDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVYRVLFEVFGM 299
Query: 293 DPEDKECQPKLRRQLEDVDYVSVEFEGNKLT 323
DPE ++CQPKLRRQLEDVDYVSVEFE NKLT
Sbjct: 300 DPEHEDCQPKLRRQLEDVDYVSVEFEDNKLT 330
>gi|297798116|ref|XP_002866942.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
gi|297312778|gb|EFH43201.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
Length = 537
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/297 (81%), Positives = 262/297 (88%)
Query: 35 LTKPTSQNLRILAVAVEPQQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDD 94
LTKP QNLRI A Q LP +SPQ+LLKELA+RK T PKKKVPPK+FILRPPLDD
Sbjct: 40 LTKPRFQNLRICASVAAETQGLPRDSPQRLLKELAQRKTATGPKKKVPPKRFILRPPLDD 99
Query: 95 KKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLG 154
KKL +RFL SPQLSLKSFPLLSSCLP S+LNNAD+TWIDEYLLE KQALGYSLEPS+ LG
Sbjct: 100 KKLAERFLNSPQLSLKSFPLLSSCLPSSKLNNADKTWIDEYLLEVKQALGYSLEPSESLG 159
Query: 155 DDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214
DDNPAKHFDTLLYLAFQHP C+R +ARHV+ GHSRL FLGQ+VLELA EFFLQRYPRES
Sbjct: 160 DDNPAKHFDTLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRES 219
Query: 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274
P PMRERVF LIG+R LPKWIKAASLQNLIFP+D+MD+LIRKEREPPVKSVFWALFGAIY
Sbjct: 220 PGPMRERVFALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIY 279
Query: 275 LCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
LC+G PEVYRVLFEVFGMDP+ ECQP+ RRQLEDVDYVSVEFEG KL WQD+A YK
Sbjct: 280 LCYGMPEVYRVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYK 336
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P+ +L + P L +C+PP W + + Q LGY L +D++ + A++
Sbjct: 336 KPPEDALFAHPRLFRACVPPGMHRFRGNIWDFDSKPKVMQTLGYPLPMNDRIKEITEARN 395
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP ++K H R RL ++GQ + ++A E L ++ ++
Sbjct: 396 IELGLGLQLCFLHP--SKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWLQ 453
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEM-DRL--IRKEREPPVKSVFWALFGAIYLC 276
E+ L+ + ++++ L N I +E+ DR R+ R P +V A+ G Y
Sbjct: 454 EKHRRLLMNKFCGRYLREKRLHNFITYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTI 513
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPK 302
+G P+V R++FEVF + + QPK
Sbjct: 514 YGKPDVRRLMFEVFDFE----QIQPK 535
>gi|15235580|ref|NP_195467.1| Ribonuclease III family protein [Arabidopsis thaliana]
gi|4468817|emb|CAB38218.1| putative protein [Arabidopsis thaliana]
gi|7270733|emb|CAB80416.1| putative protein [Arabidopsis thaliana]
gi|95147308|gb|ABF57289.1| At4g37510 [Arabidopsis thaliana]
gi|332661403|gb|AEE86803.1| Ribonuclease III family protein [Arabidopsis thaliana]
Length = 537
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/297 (81%), Positives = 261/297 (87%)
Query: 35 LTKPTSQNLRILAVAVEPQQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDD 94
LTK QNLRI A Q LP +SPQ+LLKELA+RK T PKKKVPPK+FILRPPLDD
Sbjct: 40 LTKSRFQNLRICASVTAETQGLPRDSPQRLLKELAQRKTATGPKKKVPPKRFILRPPLDD 99
Query: 95 KKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLG 154
KKL +RFL SPQLSLKSFPLLSSCLP S+LNNAD+TWIDEYLLE KQALGYSLEPS+ LG
Sbjct: 100 KKLAERFLNSPQLSLKSFPLLSSCLPSSKLNNADKTWIDEYLLEVKQALGYSLEPSESLG 159
Query: 155 DDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214
DDNPAKHFDTLLYLAFQHP C+R +ARHV+ GHSRL FLGQ+VLELA EFFLQRYPRES
Sbjct: 160 DDNPAKHFDTLLYLAFQHPSCDRARARHVKNGHSRLWFLGQYVLELALTEFFLQRYPRES 219
Query: 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274
P PMRERVF LIG+R LPKWIKAASLQNLIFP+D+MD+LIRKEREPPVKSVFWALFGAIY
Sbjct: 220 PGPMRERVFALIGKRYLPKWIKAASLQNLIFPYDDMDKLIRKEREPPVKSVFWALFGAIY 279
Query: 275 LCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
LCFG PEVYRVLFEVFGMDP+ ECQP+ RRQLEDVDYVSVEFEG KL WQD+A YK
Sbjct: 280 LCFGMPEVYRVLFEVFGMDPDADECQPRSRRQLEDVDYVSVEFEGKKLGWQDIATYK 336
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P+ +L + P L +C+PP W + + Q LGY L +D++ + A++
Sbjct: 336 KPPEDALFAHPRLFRACVPPGMHRFRGNIWDFDSKPKVMQTLGYPLTMNDRIKEITEARN 395
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP ++K H R RL ++GQ + ++A E L ++ ++
Sbjct: 396 IELGLGLQLCFLHP--SKHKFEHPRFCFERLEYVGQKIQDIAMAERLLMKHLDAPGKWLQ 453
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEM-DRL--IRKEREPPVKSVFWALFGAIYLC 276
E+ L+ + ++++ L N I +E+ DR R+ R P +V A+ G Y
Sbjct: 454 EKHRRLLMNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRRLRNPATTAVQQAIHGLAYTI 513
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPK 302
+G P+V R++FEVF + + QPK
Sbjct: 514 YGKPDVRRLMFEVFDFE----QIQPK 535
>gi|356496965|ref|XP_003517335.1| PREDICTED: uncharacterized protein LOC100814070 [Glycine max]
Length = 525
Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/334 (73%), Positives = 273/334 (81%), Gaps = 14/334 (4%)
Query: 1 MELSSSFASLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQ--DLPH 58
MELSSSF S PL + + N RI+AVA+EPQQ D P
Sbjct: 1 MELSSSFLFSPKPCSCPPPNYSLSPL---------IRNRNPNFRIVAVALEPQQQQDFPS 51
Query: 59 -NSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSS 117
NSPQ+LLKELAERKK TSPKK PP++FILRPP+DD KL +RFL SPQL LK FPLLSS
Sbjct: 52 GNSPQRLLKELAERKKATSPKKG-PPRRFILRPPIDDNKLAERFLNSPQLCLKLFPLLSS 110
Query: 118 CLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCER 177
CLP SRLNNAD+ WIDEYLLEAKQALGYSLEPS+ LGDDNPAK FDTLLYLAFQHP CER
Sbjct: 111 CLPSSRLNNADKLWIDEYLLEAKQALGYSLEPSETLGDDNPAKQFDTLLYLAFQHPSCER 170
Query: 178 NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKA 237
KARHVR+GHSRL FLGQ+VLELA EFFLQRYPRESP PMRERVFGLIG+R+LPKWIKA
Sbjct: 171 TKARHVRSGHSRLSFLGQYVLELALTEFFLQRYPRESPGPMRERVFGLIGKRSLPKWIKA 230
Query: 238 ASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDK 297
ASL NLIF FD+MD+++R+E+E PVKSVFWALFGAIYLCFG PEVYRVLFEVFGMDP+ +
Sbjct: 231 ASLHNLIFTFDDMDKIMRREKEGPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAE 290
Query: 298 ECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
+CQPKLRRQLEDVDYVS EFEG KL+WQD+ AYK
Sbjct: 291 DCQPKLRRQLEDVDYVSAEFEG-KLSWQDIVAYK 323
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY LE +D++ + A++ + L L F
Sbjct: 335 LFRACVPPGMHRFRGNIWDYDTRPHVMKTLGYPLEMTDRIPEITEARNVELGLGLQLCFM 394
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP + K H R + RL ++GQ + +L E L ++ ++E+ L+ +
Sbjct: 395 HP--SKFKFEHPRFCYERLEYIGQKIQDLVMAERLLMKHLDAPGLWLQEKHRRLLMNKYC 452
Query: 232 PKWIKAASLQNLIFPFDEMDRLI----RKEREPPVKSVFWALFGAIYLCFGFPEVYRVLF 287
++++A L +I FDE + R++R P +V AL G YL +G +V R++F
Sbjct: 453 GRYLRAKHLHRVII-FDEKVQDTYEHNRRKRNPATTAVQQALHGLSYLVYGKRDVRRLMF 511
Query: 288 EVFGMDPEDKECQPK 302
EVF + + QPK
Sbjct: 512 EVFDFE----QIQPK 522
>gi|356541663|ref|XP_003539293.1| PREDICTED: uncharacterized protein LOC100809155 [Glycine max]
Length = 540
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/297 (80%), Positives = 262/297 (88%), Gaps = 5/297 (1%)
Query: 38 PTSQNLRILAVAVEPQQDLPH-NSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKK 96
P + RI+AVA+EPQQD P NSPQ+LLKELAERKK TSPKK PP++FILRPP+DD K
Sbjct: 44 PQTPPFRIIAVALEPQQDFPSGNSPQRLLKELAERKKATSPKKG-PPRRFILRPPIDDNK 102
Query: 97 LVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDD 156
L +RFL SPQLSLKSFPLLSSCLP SRLNNAD+ WIDEYLLEAKQALGYSLEPS+ LGDD
Sbjct: 103 LAERFLNSPQLSLKSFPLLSSCLPSSRLNNADKLWIDEYLLEAKQALGYSLEPSETLGDD 162
Query: 157 N--PAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214
N PAK FDTLLYLAFQHP CER KARHVR+GHSRL FLGQ+VLELA EFFLQRYPRES
Sbjct: 163 NDNPAKQFDTLLYLAFQHPSCERTKARHVRSGHSRLSFLGQYVLELALTEFFLQRYPRES 222
Query: 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274
P PMRERVFGLIG+RNLPKWIKAASL NL+F FD+MD++ R E+E PVKSVFWALFGAIY
Sbjct: 223 PGPMRERVFGLIGKRNLPKWIKAASLHNLVFTFDDMDKIRRTEKEGPVKSVFWALFGAIY 282
Query: 275 LCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
LCFG PEVYRVLFEVFGMDP+ ++CQPKLRRQLEDVD+VS EFEG KL+WQD+ AYK
Sbjct: 283 LCFGMPEVYRVLFEVFGMDPDAEDCQPKLRRQLEDVDFVSAEFEG-KLSWQDIVAYK 338
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 11/194 (5%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY LE +D++ + A++ + L L F
Sbjct: 350 LFRACVPPGMHRFRGNIWDYDTRPHVMKTLGYPLEMADRIPEITEARNIELGLGLQLCFM 409
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP + K H R + RL ++GQ + +L E L ++ ++ER L+ +
Sbjct: 410 HP--SKYKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGLWLQERHRHLLMNKYC 467
Query: 232 PKWIKAASLQNLIFPFDEMDRLI---RKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
++++A L +I D++ R++R P +V AL G YL +G +V R++FE
Sbjct: 468 GRYLRAKHLHRVIIFDDKVQDTYEHNRRKRNPATTAVQQALHGLSYLVYGKRDVRRLMFE 527
Query: 289 VFGMDPEDKECQPK 302
VF + + QPK
Sbjct: 528 VFDFE----QIQPK 537
>gi|357453661|ref|XP_003597111.1| Ribonuclease [Medicago truncatula]
gi|357482679|ref|XP_003611626.1| Ribonuclease [Medicago truncatula]
gi|355486159|gb|AES67362.1| Ribonuclease [Medicago truncatula]
gi|355512961|gb|AES94584.1| Ribonuclease [Medicago truncatula]
Length = 544
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/333 (74%), Positives = 285/333 (85%), Gaps = 6/333 (1%)
Query: 1 MELSSSFA-SLVSDNISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLP-H 58
MELSSSF+ S N SFSS+ SPFP+Q +K TK + L +LAVA++P +D P +
Sbjct: 1 MELSSSFSLSPKPTNFSFSSSFSPFPIQILIKN---TKSRNYPLHVLAVAIDPTKDFPRN 57
Query: 59 NSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSC 118
N+PQ+LLKELAERKK+T+PK K PP+++IL+PPLDDKKL +RFL SPQLSLKSFPLLSSC
Sbjct: 58 NNPQRLLKELAERKKITNPKSKSPPRRYILKPPLDDKKLAERFLNSPQLSLKSFPLLSSC 117
Query: 119 LPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERN 178
LP RLNNAD+ WIDEYLLEAKQALGYSLEPS+ L DDNPAK FDTLLYLAFQHP CER
Sbjct: 118 LPSLRLNNADKLWIDEYLLEAKQALGYSLEPSETLEDDNPAKQFDTLLYLAFQHPSCERT 177
Query: 179 KARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA 238
K +HVR+GHSRL FLGQ+VLELA EFFLQRYPRE P PMRERV+GLIG+ NLPKWIKAA
Sbjct: 178 KQKHVRSGHSRLFFLGQYVLELALAEFFLQRYPRELPGPMRERVYGLIGKENLPKWIKAA 237
Query: 239 SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE 298
SLQNLIFP+D MD+++R++RE PVKSVFWALFGAIYLCFG PEVYRVLFEVFGMDP+D++
Sbjct: 238 SLQNLIFPYDNMDKIVRRDREGPVKSVFWALFGAIYLCFGLPEVYRVLFEVFGMDPDDED 297
Query: 299 CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
CQP+ RRQLEDVDYVS EFE NKL WQD+ AYK
Sbjct: 298 CQPRERRQLEDVDYVSAEFE-NKLNWQDIVAYK 329
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 26/220 (11%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P +L + P L +C+PP W + + +ALGY LE +D++ + A++
Sbjct: 329 KPPADALFTHPRLFRACVPPGMHRFRGNIWDYDSRPQVMRALGYPLEMTDRIPEITEARN 388
Query: 162 FD----------------TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEF 205
+ L L F HP + K H R RL ++G+ + +L E
Sbjct: 389 IELGLGLQFAPFADVECLVHLQLCFLHP--SKYKFEHPRFCFERLEYVGKTIQDLVMAER 446
Query: 206 FLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI---RKEREPPV 262
L ++ ++E+ ++ + ++++A L I D + R+ R P
Sbjct: 447 LLMKHLDAPGLWLQEKHRRILLNKFCGRYLRAKQLHRFIIYDDNVQNAYERNRRRRNPAT 506
Query: 263 KSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPK 302
+V A+ G YL +G +V R++FE F + + QPK
Sbjct: 507 TAVNQAIHGLSYLVYGKRDVRRLMFEYFDFE----QIQPK 542
>gi|222619424|gb|EEE55556.1| hypothetical protein OsJ_03820 [Oryza sativa Japonica Group]
Length = 511
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/294 (72%), Positives = 246/294 (83%), Gaps = 12/294 (4%)
Query: 44 RILAVAVEPQQDLPHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLK 103
R+ A A E + P +LL+ELAERKK SPKKK PP++FIL+PPLDD++L RFL
Sbjct: 23 RVAAAACE------SSPPSRLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLS 76
Query: 104 SPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDN----PA 159
SPQLSLK+ PLLSSCLP + L+ AD+TW+DEYLLEAKQALGY L PS+ LGD + PA
Sbjct: 77 SPQLSLKALPLLSSCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPA 136
Query: 160 KHFDTLLYLAFQH--PFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAP 217
+HFD LLYLAFQH CER + RHVR+GHSRL FLGQ+VLELAFCEFFLQRYPRESP P
Sbjct: 137 RHFDVLLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGP 196
Query: 218 MRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF 277
MRERVF LIG+R +PKWIKAASL NL+FP+D++D++IRK+REPP K+VFWALFGAIYLCF
Sbjct: 197 MRERVFALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCF 256
Query: 278 GFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
G PEVYRVLFE FGMDPED+ CQPKLRRQLEDVDYVSVEFE +LTWQDVAAY+
Sbjct: 257 GMPEVYRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYR 310
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY L +D++ + A++ + L L F
Sbjct: 322 LFRACVPPGMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFL 381
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP ++K H R RL ++GQ + +L E L ++ + E+ L+ +
Sbjct: 382 HP--SKHKFEHPRFCLERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYC 439
Query: 232 PKWIKAASLQN-LIFPFDEMDRL--IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
++++ L + +I+ DR R+ R P +V A+ G Y +G P+V R++FE
Sbjct: 440 GRYLRDKHLHHYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFE 499
Query: 289 VFGMDPEDKECQPK 302
VF + + QPK
Sbjct: 500 VFDFE----QVQPK 509
>gi|162463399|ref|NP_001106055.1| ribonuclease III domain protein1 [Zea mays]
gi|149980667|gb|ABR53724.1| chloroplast ribonuclease III domain protein [Zea mays]
gi|194704042|gb|ACF86105.1| unknown [Zea mays]
gi|195647406|gb|ACG43171.1| RNA binding protein [Zea mays]
gi|223950477|gb|ACN29322.1| unknown [Zea mays]
gi|414880052|tpg|DAA57183.1| TPA: ribonuclease III domain protein1 [Zea mays]
Length = 525
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/318 (68%), Positives = 256/318 (80%), Gaps = 19/318 (5%)
Query: 23 PFPLQSSLKTLKLTKPTSQNLRILAVAVE-----PQQDLPHNSPQKLLKELAERKKVTSP 77
PF L SS S+ +R+LAVA + P NSP +LL+ELA+RKK SP
Sbjct: 17 PFSLHSS----------SRRVRVLAVAADQTPPPAPPSEPANSPSRLLRELAQRKKAVSP 66
Query: 78 KKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLL 137
KKK PP++FIL+PPLDD++L RFL SPQLSLK+ PLLSSCLP + L+ AD+TW+DEYLL
Sbjct: 67 KKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLSTADRTWMDEYLL 126
Query: 138 EAKQALGYSLEPSDQLG--DDNPAKHFDTLLYLAFQH--PFCERNKARHVRAGHSRLCFL 193
EAKQALGY L PS+ LG DD PA+HFD L YLAFQH P ER + RHVR GHSRL FL
Sbjct: 127 EAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMRHVRNGHSRLWFL 186
Query: 194 GQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL 253
GQ+VLELAFCEFFLQRYPRESP PMRERVF LIG++ LP+W+KAASL NL+FP+D++D++
Sbjct: 187 GQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLHNLVFPYDDLDKM 246
Query: 254 IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYV 313
IRK+REPP K+VFWA+FGAIYLCFG PEVYRVLFE FGMDP+D+ CQPKLRRQLEDVDYV
Sbjct: 247 IRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQPKLRRQLEDVDYV 306
Query: 314 SVEFEGNKLTWQDVAAYK 331
SVEFE +LTWQDVAAY+
Sbjct: 307 SVEFEKRQLTWQDVAAYR 324
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY L +D++ + A++ + L L F
Sbjct: 336 LFRACVPPGMHRFRGNIWDFDSRPKVMTTLGYPLPMNDRIPEITEARNIELGLGLQLCFL 395
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP ++K H R + RL ++GQ + +L E L ++ + E+ + +
Sbjct: 396 HP--SKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRTLMNKYC 453
Query: 232 PKWIKAASLQN-LIFPFDEMDRL--IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
++++ LQ+ +I+ DR R+ R P SV AL G Y +G P+V R++FE
Sbjct: 454 GRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPSTTSVQQALHGLAYCVYGKPDVRRLMFE 513
Query: 289 VFGMDPEDKECQPK 302
VF + + QPK
Sbjct: 514 VFDFE----QVQPK 523
>gi|242059029|ref|XP_002458660.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor]
gi|241930635|gb|EES03780.1| hypothetical protein SORBIDRAFT_03g037610 [Sorghum bicolor]
Length = 529
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/277 (75%), Positives = 241/277 (87%), Gaps = 4/277 (1%)
Query: 59 NSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSC 118
NSP +LL+ELA+RKK SPKKK PP++FIL+PPLDD++L RFL SPQLSLK+ PLLSSC
Sbjct: 52 NSPSRLLRELAQRKKAVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSC 111
Query: 119 LPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLG--DDNPAKHFDTLLYLAFQH--PF 174
LP + L+ AD+TW+DEYLLEAKQALGY L PS+ LG DD PA+HFD LLYLAFQH P
Sbjct: 112 LPSAPLSTADRTWMDEYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLLYLAFQHLDPS 171
Query: 175 CERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKW 234
ER + RHVR GHSRL FLGQ+VLELAFCEFFLQRYPRESP PMRERVF LIG++ LP+W
Sbjct: 172 SERTRTRHVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRW 231
Query: 235 IKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294
+KAASL NL+FP+D++D++IRK+REPP K+VFWALFGAIYLCFG PEVYRVLFE FGMDP
Sbjct: 232 LKAASLHNLVFPYDDLDKMIRKDREPPSKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDP 291
Query: 295 EDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
+D+ CQPKLRRQLEDVDYVSVEFE +LTWQDVAAY+
Sbjct: 292 DDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYR 328
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 11/194 (5%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY L +D++ + A++ + L L F
Sbjct: 340 LFRACVPPGMHRFRGNIWDFDSRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFL 399
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP ++K H R + RL ++GQ + +L E L ++ + E+ + +
Sbjct: 400 HP--SKHKFEHPRFCYERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRTLMNKYC 457
Query: 232 PKWIKAASLQN-LIFPFDEMDRL--IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
++++ LQ+ +I+ DR R+ R P SV AL G Y +G P+V R++FE
Sbjct: 458 GRYLRDKHLQHYIIYGETVQDRFEHNRRLRNPSTTSVQQALHGLAYCVYGKPDVRRLMFE 517
Query: 289 VFGMDPEDKECQPK 302
VF + + QPK
Sbjct: 518 VFDFE----QVQPK 527
>gi|218189252|gb|EEC71679.1| hypothetical protein OsI_04153 [Oryza sativa Indica Group]
Length = 559
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/275 (75%), Positives = 239/275 (86%), Gaps = 6/275 (2%)
Query: 63 KLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPS 122
+LL+ELAERKK SPKKK PP++FIL+PPLDD++L RFL SPQLSLK+ PLLSSCLP +
Sbjct: 58 RLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLSSCLPSA 117
Query: 123 RLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDN----PAKHFDTLLYLAFQH--PFCE 176
L+ AD+TW+DEYLLEAKQALGY L PS+ LGD + PA+HFD LLYLAFQH CE
Sbjct: 118 PLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQHLDTSCE 177
Query: 177 RNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIK 236
R + RHVR+GHSRL FLGQ+VLELAFCEFFLQRYPRESP PMRERVF LIG+R +PKWIK
Sbjct: 178 RTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRAIPKWIK 237
Query: 237 AASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPED 296
AASL NL+FP+D++D++IRK+REPP K+VFWALFGAIYLCFG PEVYRVLFE FGMDPED
Sbjct: 238 AASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPED 297
Query: 297 KECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
+ CQPKLRRQLEDVDYVSVEFE +LTWQDVAAY+
Sbjct: 298 ESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYR 332
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH------------ 161
L +C+PP W + + LGY L +D++ + A++
Sbjct: 344 LFRACVPPGMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQSPAI 403
Query: 162 ----------------FDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEF 205
+ L L F HP ++K H R RL ++GQ + +L E
Sbjct: 404 LQVYRPKKSVMITNLPLNLRLILCFLHP--SKHKFEHPRFCLERLEYVGQKIQDLVMAER 461
Query: 206 FLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN-LIFPFDEMDRL--IRKEREPPV 262
L ++ + E+ L+ + ++++ L + +I+ DR R+ R P
Sbjct: 462 LLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRDKHLHHYIIYGESVQDRFEHNRRLRNPST 521
Query: 263 KSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPK 302
+V A+ G Y +G P+V R++FEVF + + QPK
Sbjct: 522 TAVQQAIHGLAYCVYGKPDVRRLMFEVFDFE----QVQPK 557
>gi|115440603|ref|NP_001044581.1| Os01g0810100 [Oryza sativa Japonica Group]
gi|20160696|dbj|BAB89639.1| unknown protein [Oryza sativa Japonica Group]
gi|113534112|dbj|BAF06495.1| Os01g0810100 [Oryza sativa Japonica Group]
gi|215701330|dbj|BAG92754.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704464|dbj|BAG93898.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 533
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/275 (75%), Positives = 239/275 (86%), Gaps = 6/275 (2%)
Query: 63 KLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPS 122
+LL+ELAERKK SPKKK PP++FIL+PPLDD++L RFL SPQLSLK+ PLLSSCLP +
Sbjct: 58 RLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLSSCLPSA 117
Query: 123 RLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDN----PAKHFDTLLYLAFQH--PFCE 176
L+ AD+TW+DEYLLEAKQALGY L PS+ LGD + PA+HFD LLYLAFQH CE
Sbjct: 118 PLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQHLDTSCE 177
Query: 177 RNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIK 236
R + RHVR+GHSRL FLGQ+VLELAFCEFFLQRYPRESP PMRERVF LIG+R +PKWIK
Sbjct: 178 RTRTRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRAIPKWIK 237
Query: 237 AASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPED 296
AASL NL+FP+D++D++IRK+REPP K+VFWALFGAIYLCFG PEVYRVLFE FGMDPED
Sbjct: 238 AASLHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPED 297
Query: 297 KECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
+ CQPKLRRQLEDVDYVSVEFE +LTWQDVAAY+
Sbjct: 298 ESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYR 332
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY L +D++ + A++ + L L F
Sbjct: 344 LFRACVPPGMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFL 403
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP ++K H R RL ++GQ + +L E L ++ + E+ L+ +
Sbjct: 404 HP--SKHKFEHPRFCLERLEYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYC 461
Query: 232 PKWIKAASLQN-LIFPFDEMDRL--IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
++++ L + +I+ DR R+ R P +V A+ G Y +G P+V R++FE
Sbjct: 462 GRYLRDKHLHHYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFE 521
Query: 289 VFGMDPEDKECQPK 302
VF + + QPK
Sbjct: 522 VFDFE----QVQPK 531
>gi|297817232|ref|XP_002876499.1| hypothetical protein ARALYDRAFT_907437 [Arabidopsis lyrata subsp.
lyrata]
gi|297322337|gb|EFH52758.1| hypothetical protein ARALYDRAFT_907437 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/317 (70%), Positives = 247/317 (77%), Gaps = 32/317 (10%)
Query: 15 ISFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPHNSPQKLLKELAERKKV 74
ISFS +IS F S ++++ LTKP QNLRI A Q LP +SPQ+LLKEL +RK
Sbjct: 23 ISFSPSISRF--SSKIQSI-LTKPRFQNLRICASVTAETQGLPRDSPQRLLKELGKRKTA 79
Query: 75 TSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDE 134
T PKKKVPPK+FILRPPLDDKKL +RFL SPQLSLKSFPLL SCLP S+LNNAD+TWIDE
Sbjct: 80 TGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLISCLPSSKLNNADKTWIDE 139
Query: 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLG 194
YLLE KQALGYSLEPS+ LGDDNPAKHFDTLLYLAFQHP C+R +ARHV+ GHSRL FLG
Sbjct: 140 YLLEVKQALGYSLEPSEILGDDNPAKHFDTLLYLAFQHPSCDRARARHVKNGHSRLWFLG 199
Query: 195 QFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI 254
Q+VLELA LIG+R LPKWIKAASLQNLIFP+D+MD+LI
Sbjct: 200 QYVLELA-----------------------LIGKRYLPKWIKAASLQNLIFPYDDMDKLI 236
Query: 255 RKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVS 314
RKE SVFWALFGAI LC+G PEVYRVLFEVFGMDP+ ECQP+ RRQLEDVDYVS
Sbjct: 237 RKE------SVFWALFGAICLCYGMPEVYRVLFEVFGMDPDADECQPRSRRQLEDVDYVS 290
Query: 315 VEFEGNKLTWQDVAAYK 331
VEFEG KL WQD+A YK
Sbjct: 291 VEFEGKKLGWQDIATYK 307
>gi|356511949|ref|XP_003524684.1| PREDICTED: uncharacterized protein LOC100819140 [Glycine max]
Length = 518
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 220/333 (66%), Positives = 269/333 (80%), Gaps = 18/333 (5%)
Query: 1 MELSSSFASLVSDNI-SFSSAISPFPLQSSLKTLKLTKPTSQNLRILAVAVEPQQDLPHN 59
MELSSSF S N+ SFSS+++P TL+ Q LR+ AV ++P Q+LP N
Sbjct: 1 MELSSSFTH--SHNLFSFSSSLTP--------TLR-----RQTLRVSAVTIDPPQELPKN 45
Query: 60 SPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCL 119
SPQ+LLKELAERK+ + + PP++FIL PLDDK++ DRFL SPQL+L +FPLLSSCL
Sbjct: 46 SPQRLLKELAERKRPSPRTPRAPPRRFILTRPLDDKRVADRFLNSPQLALNTFPLLSSCL 105
Query: 120 PPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDN-PAKHFDTLLYLAFQHPFCERN 178
P S L++ D++W++ +L+EAKQALGY LEPS LGDD+ PA DTLLYLAFQH CER+
Sbjct: 106 PFSPLDHLDKSWMENHLMEAKQALGYPLEPSLTLGDDSGPAMELDTLLYLAFQHESCERS 165
Query: 179 KARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA 238
+ARHVR GHSRL FLGQ+VLELA E+FLQRYPRESPAPMRERVF LIG+R+LP+WIK A
Sbjct: 166 RARHVRFGHSRLFFLGQYVLELALAEYFLQRYPRESPAPMRERVFELIGKRSLPRWIKGA 225
Query: 239 SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE 298
+L NL+FP+D+MD+L+RKERE VKSVFWALFGAIYLCFG PEVYRVLFEVFGMDP+ ++
Sbjct: 226 ALHNLVFPYDDMDKLVRKEREATVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAED 285
Query: 299 CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
CQPKLRRQLED+D+VS EFEG K++WQD+ YK
Sbjct: 286 CQPKLRRQLEDIDHVSAEFEG-KISWQDMVVYK 317
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 8/197 (4%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P +L + P L +C+PP W + + + LGY L+ +D++ + A++
Sbjct: 317 KPPADALFAHPRLFRACVPPGMHRFRGNLWDYDCRPQIMRVLGYPLKMTDRIPEITKARN 376
Query: 162 --FDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
D L L F HP + K H R + RL +LGQ + +L E L ++ ++
Sbjct: 377 IELDLGLQLCFLHP--SKYKFDHPRFCYERLEYLGQKIQDLVMAERLLMKHLDAPGLWLQ 434
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE---REPPVKSVFWALFGAIYLC 276
R + + ++++A +L + I +++ ++ + P SV AL G Y
Sbjct: 435 NRHRRFLMNKYCGRYLRAKNLHHFIIYNEKVQDAYQRAYRLKYPVTTSVQQALHGLSYAV 494
Query: 277 FGFPEVYRVLFEVFGMD 293
+G +V R++FEVF +
Sbjct: 495 YGKRDVRRLMFEVFDFE 511
>gi|326495340|dbj|BAJ85766.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503490|dbj|BAJ86251.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520661|dbj|BAJ92694.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/323 (69%), Positives = 257/323 (79%), Gaps = 19/323 (5%)
Query: 20 AISPFPLQSSLKTLKLTKPTSQNLRILAVAVE-----PQQD--LPHNSPQKLLKELAERK 72
A SP PL T + +R+LAVA + PQ P NSP +LL+ELA+RK
Sbjct: 12 AFSPLPLH--------LPATRRRVRVLAVAADQTPPPPQASPSEPANSPSRLLRELAQRK 63
Query: 73 KVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWI 132
K SPKKK PP++FIL+PPLDD++L RFL SPQLSLKS PLLSSCLP + L+ AD+TW+
Sbjct: 64 KAVSPKKKHPPRRFILKPPLDDERLTQRFLNSPQLSLKSLPLLSSCLPSAPLSAADRTWM 123
Query: 133 DEYLLEAKQALGYSLEPSDQLG--DDNPAKHFDTLLYLAFQH--PFCERNKARHVRAGHS 188
DEYLLEAKQALGY L PS+ LG DD PA+HFD LLYL FQH P ER + RHVR GHS
Sbjct: 124 DEYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLLYLVFQHLDPSSERTRTRHVRNGHS 183
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLGQFVLELAFCEFFLQRYPRESP PMRERVF LIG++ LPKWIKAASL NL+FP+D
Sbjct: 184 RLWFLGQFVLELAFCEFFLQRYPRESPGPMRERVFALIGKKMLPKWIKAASLHNLVFPYD 243
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLE 308
++D+++RK+REPP K+VFWALFGAIYLCFG PEVYRVLFE FGMDPE++ CQPKLRRQLE
Sbjct: 244 DLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPEEESCQPKLRRQLE 303
Query: 309 DVDYVSVEFEGNKLTWQDVAAYK 331
DVDYVSVEFE +L WQDVAAY+
Sbjct: 304 DVDYVSVEFEKRQLAWQDVAAYR 326
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY L +D++ + A++ + L L F
Sbjct: 338 LFRACVPPGMHRFRGNIWDFDNRPKVMNILGYPLPANDKIPEITEARNIELGLGLQLCFM 397
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP + K H R RL ++GQ + +L E L ++ + E+ L+ +
Sbjct: 398 HP--SKYKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLSEKHRRLLMNKYC 455
Query: 232 PKWIKAASLQN-LIFPFDEMDRL--IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
++++ L + +I+ DR R+ R P +V A+ G Y +G P+V R++FE
Sbjct: 456 GRYLRGKHLHHYIIYGETVQDRFEHNRRLRNPSTTAVQQAIHGLSYCVYGKPDVRRLMFE 515
Query: 289 VFGMDPEDKECQPK 302
VF + + QPK
Sbjct: 516 VFDFE----QVQPK 525
>gi|326506566|dbj|BAJ91324.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 493
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/323 (69%), Positives = 257/323 (79%), Gaps = 19/323 (5%)
Query: 20 AISPFPLQSSLKTLKLTKPTSQNLRILAVAVE-----PQQD--LPHNSPQKLLKELAERK 72
A SP PL T + +R+LAVA + PQ P NSP +LL+ELA+RK
Sbjct: 12 AFSPLPLH--------LPATRRRVRVLAVAADQTPPPPQASPSEPANSPSRLLRELAQRK 63
Query: 73 KVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWI 132
K SPKKK PP++FIL+PPLDD++L RFL SPQLSLKS PLLSSCLP + L+ AD+TW+
Sbjct: 64 KAVSPKKKHPPRRFILKPPLDDERLTQRFLNSPQLSLKSLPLLSSCLPSAPLSAADRTWM 123
Query: 133 DEYLLEAKQALGYSLEPSDQLG--DDNPAKHFDTLLYLAFQH--PFCERNKARHVRAGHS 188
DEYLLEAKQALGY L PS+ LG DD PA+HFD LLYL FQH P ER + RHVR GHS
Sbjct: 124 DEYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLLYLVFQHLDPSSERTRTRHVRNGHS 183
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLGQFVLELAFCEFFLQRYPRESP PMRERVF LIG++ LPKWIKAASL NL+FP+D
Sbjct: 184 RLWFLGQFVLELAFCEFFLQRYPRESPGPMRERVFALIGKKMLPKWIKAASLHNLVFPYD 243
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLE 308
++D+++RK+REPP K+VFWALFGAIYLCFG PEVYRVLFE FGMDPE++ CQPKLRRQLE
Sbjct: 244 DLDKMLRKDREPPTKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPEEESCQPKLRRQLE 303
Query: 309 DVDYVSVEFEGNKLTWQDVAAYK 331
DVDYVSVEFE +L WQDVAAY+
Sbjct: 304 DVDYVSVEFEKRQLAWQDVAAYR 326
>gi|357125516|ref|XP_003564439.1| PREDICTED: uncharacterized protein LOC100822105 [Brachypodium
distachyon]
Length = 529
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/279 (77%), Positives = 241/279 (86%), Gaps = 4/279 (1%)
Query: 57 PHNSPQKLLKELAERKKVTSPKKKVPPKKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLS 116
P NSP +LL+ELAERKK SPKKK PP++FIL+PPLDD++L RFL SPQLSLKS PLLS
Sbjct: 50 PANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKSLPLLS 109
Query: 117 SCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGD--DNPAKHFDTLLYLAFQH-- 172
SCLP S L+ AD+TW+DEYLLEAKQALGY L PS+ LGD D PA+HFD LLYLAFQH
Sbjct: 110 SCLPSSPLSAADRTWMDEYLLEAKQALGYPLAPSETLGDGDDCPARHFDVLLYLAFQHLD 169
Query: 173 PFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLP 232
P CER + RHVR GHSRL FLGQFVLELAF EFFLQRYPRESP PMRERVF LIG+R LP
Sbjct: 170 PSCERTRTRHVRNGHSRLWFLGQFVLELAFSEFFLQRYPRESPGPMRERVFALIGKRMLP 229
Query: 233 KWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292
+W+KAASL NL+FP+D +DR+IRK+REPP K+VFWALFGAIYLCFG PEVYRVLFE FGM
Sbjct: 230 RWLKAASLHNLVFPYDNLDRMIRKDREPPTKAVFWALFGAIYLCFGMPEVYRVLFEAFGM 289
Query: 293 DPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
DPE++ CQPKLRRQLEDVDYVSVEFE +LTWQDVAAY+
Sbjct: 290 DPEEESCQPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYR 328
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
Query: 114 LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFD--TLLYLAFQ 171
L +C+PP W + + LGY L +D++ + A++ + L L F
Sbjct: 340 LFRACVPPGMHRFRGNIWDFDNRPKVMNILGYPLPMNDRIPEITEARNIELGLGLQLCFL 399
Query: 172 HPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNL 231
HP ++K H R RL ++GQ + +L E L ++ + E+ ++ +
Sbjct: 400 HP--SKHKFEHPRFCFERLEYVGQKIQDLVLAERLLMKHLDAPGRWLGEKHRRMLMNKYC 457
Query: 232 PKWIKAASLQN-LIFPFDEMDRL--IRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
++++ L + +I+ DR R+ R P +V A+ G Y +G P+V R++FE
Sbjct: 458 GRYLRDKHLHHYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFE 517
Query: 289 VFGMDPEDKECQPK 302
VF + + QPK
Sbjct: 518 VFDFE----QVQPK 527
>gi|357476363|ref|XP_003608467.1| Ribonuclease [Medicago truncatula]
gi|355509522|gb|AES90664.1| Ribonuclease [Medicago truncatula]
Length = 361
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/298 (64%), Positives = 230/298 (77%), Gaps = 12/298 (4%)
Query: 41 QNLRILAVAVEPQQDLPHNSPQKLLKELAERK-KVTSPKKKVPPKKFILRPPLDDKKLVD 99
+ L I A+ P LP NSPQ+LLKEL + K K SP KK PP+ IL+PPL +K L++
Sbjct: 36 KTLHIYALTTNP---LPPNSPQRLLKELEQHKNKTHSPNKKTPPRTTILKPPLRNKNLIN 92
Query: 100 RFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQL--GDDN 157
SPQL+L +FPLLSSCLP + L D W++ +LLE KQALGY L+P D++ +DN
Sbjct: 93 ----SPQLTLSTFPLLSSCLPHAPLKTTDSAWMETHLLEVKQALGYPLQPFDEMLGEEDN 148
Query: 158 PAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAP 217
PAK FDTLLYLAFQHP C R K RHVR+ HSRL FLGQ+V+ELA EFFLQRYPRE+ P
Sbjct: 149 PAKQFDTLLYLAFQHPTC-RGKGRHVRSAHSRLFFLGQYVIELALGEFFLQRYPREAVGP 207
Query: 218 MRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF 277
MRERVFGL+G+ LPKWIK ASL L+FP +MD+L+RKERE KSVFWALFGAIYLCF
Sbjct: 208 MRERVFGLVGKHRLPKWIKNASLHGLVFPNVDMDKLVRKEREQIAKSVFWALFGAIYLCF 267
Query: 278 GFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFI 335
G PEVYR+LFEVFGMDP+ +ECQP+LR+QLED+D+VS EFEG KL+WQD+ AYK F+
Sbjct: 268 GMPEVYRILFEVFGMDPDAEECQPRLRKQLEDIDHVSAEFEG-KLSWQDMVAYKMPFL 324
>gi|357476361|ref|XP_003608466.1| Ribonuclease [Medicago truncatula]
gi|355509521|gb|AES90663.1| Ribonuclease [Medicago truncatula]
Length = 530
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/294 (64%), Positives = 228/294 (77%), Gaps = 12/294 (4%)
Query: 41 QNLRILAVAVEPQQDLPHNSPQKLLKELAERK-KVTSPKKKVPPKKFILRPPLDDKKLVD 99
+ L I A+ P LP NSPQ+LLKEL + K K SP KK PP+ IL+PPL +K L++
Sbjct: 36 KTLHIYALTTNP---LPPNSPQRLLKELEQHKNKTHSPNKKTPPRTTILKPPLRNKNLIN 92
Query: 100 RFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQL--GDDN 157
SPQL+L +FPLLSSCLP + L D W++ +LLE KQALGY L+P D++ +DN
Sbjct: 93 ----SPQLTLSTFPLLSSCLPHAPLKTTDSAWMETHLLEVKQALGYPLQPFDEMLGEEDN 148
Query: 158 PAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAP 217
PAK FDTLLYLAFQHP C R K RHVR+ HSRL FLGQ+V+ELA EFFLQRYPRE+ P
Sbjct: 149 PAKQFDTLLYLAFQHPTC-RGKGRHVRSAHSRLFFLGQYVIELALGEFFLQRYPREAVGP 207
Query: 218 MRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF 277
MRERVFGL+G+ LPKWIK ASL L+FP +MD+L+RKERE KSVFWALFGAIYLCF
Sbjct: 208 MRERVFGLVGKHRLPKWIKNASLHGLVFPNVDMDKLVRKEREQIAKSVFWALFGAIYLCF 267
Query: 278 GFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYK 331
G PEVYR+LFEVFGMDP+ +ECQP+LR+QLED+D+VS EFEG KL+WQD+ AYK
Sbjct: 268 GMPEVYRILFEVFGMDPDAEECQPRLRKQLEDIDHVSAEFEG-KLSWQDMVAYK 320
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 12/206 (5%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P +L + P L +C+PP W + Q LGY LE +D++ + A++
Sbjct: 320 KPPADALFAHPRLFRACIPPGMHRFRGNVWDYDSRPRVMQILGYPLEMTDRIPEITEARN 379
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP K H R + RL +LGQ + +L E L ++ ++
Sbjct: 380 VELGLGLQLCFLHP--SNYKFDHPRFCYERLEYLGQKIADLVMAERLLMKHLDAPGYWLQ 437
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE---REPPVKSVFWALFGAIYLC 276
E+ + R +++A L I D++ + R P SV AL G Y
Sbjct: 438 EKHRRTLMNRYCGMYLRAKQLHRFIIYSDKVRSSYERSHRLRNPATVSVQQALHGLSYAV 497
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPK 302
+G +V R++FEVF ++ + QPK
Sbjct: 498 YGKRDVRRLMFEVFDVE----QIQPK 519
>gi|168054513|ref|XP_001779675.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668873|gb|EDQ55471.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 461
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 128/250 (51%), Positives = 169/250 (67%), Gaps = 7/250 (2%)
Query: 84 KKFILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQAL 143
++ +LRPPLDD +L ++ L SPQL+L +FPLLS+CLP + LN D+ W++E+LLEAK AL
Sbjct: 16 ERVLLRPPLDDTRLAEKLLSSPQLTLTNFPLLSACLPSAPLNQHDEAWMEEFLLEAKDAL 75
Query: 144 GY-SLEPSDQLGDDNPAKHFDTLLYLAFQHPFCER-NKARHVRAGHSRLCFLGQFVLELA 201
G S P + +PA DTLLYLAFQHP R KA +VR HSRL FLG++VLELA
Sbjct: 76 GLASFTPEE----GSPAAQLDTLLYLAFQHPDSVRARKAPYVRKAHSRLAFLGEYVLELA 131
Query: 202 FCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP 261
E LQ +PRE +RERVFGL ++ LP W+K AS+ LI+P + + ++ P
Sbjct: 132 MAELVLQMFPRELVGSLRERVFGLTNKKVLPDWLKNASMDRLIYPDGDWGEIKWSDKLKP 191
Query: 262 VKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNK 321
KSVF A+ AIYL G PEVYRVLFE FG D + + QP+ R EDVD++S E +G +
Sbjct: 192 CKSVFHAIVAAIYLTLGMPEVYRVLFEAFGFDVDAPQFQPR-PRVCEDVDHLSPELDGER 250
Query: 322 LTWQDVAAYK 331
L+WQD+A Y+
Sbjct: 251 LSWQDIAYYQ 260
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 19/230 (8%)
Query: 77 PKKKVPPKKFILRPPLDDKKLVDR---FLKSPQLSLKSFP-LLSSCLPPSRLNNADQTWI 132
P+ +V L P LD ++L + + + P+ +L + P L SC+PP W
Sbjct: 231 PRPRVCEDVDHLSPELDGERLSWQDIAYYQPPEEALFAEPRLFRSCVPPGMHRFRQNLWE 290
Query: 133 DEYLLEAKQALGYSLEPSDQLGDDNP----AKHFDTLL--YLAFQHPFCERNKARHVRAG 186
E L ++ LGY + DDNP A++ + L L F HP +KA H R
Sbjct: 291 LESLPVVERTLGYP----QPVRDDNPVLESARNIELQLGLQLCFLHP--SAHKAEHPRFC 344
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL +LG V ++ E L ++ A + ER L+ R +++ L + I
Sbjct: 345 NERLEYLGSKVQDVIMAEKILMKHLDAPGAWIEERHRRLLLNRLCGLYLRNLKLHHHIVY 404
Query: 247 FDEMDRLI---RKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293
DE L RK R V A+ G Y +G P+V R++F V +
Sbjct: 405 SDERRELYVKSRKLRNFSTTGVSQAIHGLAYTVYGRPDVRRIMFRVMNFE 454
>gi|302788362|ref|XP_002975950.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii]
gi|300156226|gb|EFJ22855.1| hypothetical protein SELMODRAFT_104739 [Selaginella moellendorffii]
Length = 479
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 153/259 (59%), Gaps = 15/259 (5%)
Query: 86 FILRPPLDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGY 145
FIL+PP+ +++L R L SPQL L S P+LSS LP + D+ WI E ++E K LGY
Sbjct: 1 FILKPPMSERQLARRILASPQLRLNSLPVLSSLLPVAPFTEFDKEWIHENMVEVKDILGY 60
Query: 146 SLEPSD---QLGDD---------NPAKHFDTLLYLAFQHPFCERNK-ARHVRAGHSRLCF 192
D + DD +P H T LYLAFQH R K RH R GH RL F
Sbjct: 61 GKVGEDYDRDVEDDEKFWQHSSPDPKAHLHTFLYLAFQHEESYRAKRMRHTRVGHYRLAF 120
Query: 193 LGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDR 252
LG+FVL+LA E LQ YPR++PA +RER F + +R L + + A L L FP DE
Sbjct: 121 LGEFVLDLAMAELLLQMYPRDTPASLRERAFAVTNKRGLERILSDAGLHQLAFPEDENFH 180
Query: 253 LIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDY 312
+ P +SVF AL A+YL G EVY++LFE F D + K QPK+R + EDVD+
Sbjct: 181 VCLFSL--PCRSVFLALIAAVYLSLGMSEVYKLLFETFAFDLDAKSAQPKVRSKHEDVDH 238
Query: 313 VSVEFEGNKLTWQDVAAYK 331
VS +FEG +LTW+D+A YK
Sbjct: 239 VSADFEGRRLTWKDIAFYK 257
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 12/198 (6%)
Query: 101 FLKSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPA 159
F K P+ +L + P L +C+PP W E + LGY L+ D+ D A
Sbjct: 255 FYKPPEDALFAAPRLFRACVPPGMYRFRRNLWDVESRPKVMDILGYPLDVRDENLDMTEA 314
Query: 160 KHFD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAP 217
+ + L L F HP +N H R + RL F+G + ++ E L ++ ++PA
Sbjct: 315 REIELGLGLQLCFMHPSAYKND--HPRFCYERLEFIGSKIQDVVMAERLLMKH-LDAPAI 371
Query: 218 MRERVF-GLIGRRNLPKWIKAASLQNLIFPFDEMDRL----IRKEREPPVKSVFWALFGA 272
R+ G+ R + ++ L I + E +L + R + AL G
Sbjct: 372 FLNRIHRGITINRICGRRLRMKRLHKFI-TYGEERQLEFARCHRLRNFTHSATQQALHGL 430
Query: 273 IYLCFGFPEVYRVLFEVF 290
Y+ +G EV R++F+VF
Sbjct: 431 GYIVYGKAEVRRLMFDVF 448
>gi|302770230|ref|XP_002968534.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii]
gi|300164178|gb|EFJ30788.1| hypothetical protein SELMODRAFT_145591 [Selaginella moellendorffii]
Length = 473
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 147/253 (58%), Gaps = 15/253 (5%)
Query: 92 LDDKKLVDRFLKSPQLSLKSFPLLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSD 151
+ +++L R L SPQL L S P+LSS LP + D+ WI E ++E K LGY D
Sbjct: 1 MSERQLARRILASPQLRLNSLPVLSSLLPVAPFTEFDKEWIHENMVEVKDILGYGKVGED 60
Query: 152 ---QLGDD---------NPAKHFDTLLYLAFQHPFCERNK-ARHVRAGHSRLCFLGQFVL 198
+ DD +P H T LYLAFQH R K RH R GH RL FLG+FVL
Sbjct: 61 YDRDVEDDEKFWQHSSPDPKAHLHTFLYLAFQHEESYRAKRMRHTRVGHYRLAFLGEFVL 120
Query: 199 ELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKER 258
+LA E LQ YPR++PA +RER F + +R L + + A L L FP DE +
Sbjct: 121 DLAMAELLLQMYPRDTPASLRERAFAVTNKRGLERILSDAGLHQLAFPEDENFHVCLFS- 179
Query: 259 EPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFE 318
P +SVF AL A+YL G EVY++LFE F D + K QPK+R + EDVD+VS +FE
Sbjct: 180 -LPCRSVFLALIAAVYLSLGMSEVYKLLFETFAFDLDAKSAQPKVRSKHEDVDHVSADFE 238
Query: 319 GNKLTWQDVAAYK 331
G +LTW+D+A YK
Sbjct: 239 GRRLTWKDIAFYK 251
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 12/198 (6%)
Query: 101 FLKSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPA 159
F K P+ +L + P L +C+PP W E + LGY L+ D+ D A
Sbjct: 249 FYKPPEDALFAAPRLFRACVPPGMYRFRRNLWDVESRPKVMDILGYPLDVRDENLDMTEA 308
Query: 160 KHFD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAP 217
+ + L L F HP +N H R + RL F+G + ++ E L ++ ++PA
Sbjct: 309 REIELGLGLQLCFMHPSAYKND--HPRFCYERLEFIGSKIQDVVMAERLLMKHL-DAPAI 365
Query: 218 MRERVF-GLIGRRNLPKWIKAASLQNLIFPFDEMDRL----IRKEREPPVKSVFWALFGA 272
R+ G+ R + ++ L I + E +L + R + AL G
Sbjct: 366 FLNRIHRGITINRICGRRLRMKRLHKFI-TYGEERQLEFARCHRLRNFTHSATQQALHGL 424
Query: 273 IYLCFGFPEVYRVLFEVF 290
Y+ +G EV R++F+VF
Sbjct: 425 GYIVYGKAEVRRLMFDVF 442
>gi|296087343|emb|CBI33717.3| unnamed protein product [Vitis vinifera]
Length = 286
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/82 (91%), Positives = 79/82 (96%)
Query: 250 MDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQLED 309
MDRLIRKEREPPVKSVFWALFGAIYLC+G PEVYRVLFEVFGMDPE ++CQPKLRRQLED
Sbjct: 1 MDRLIRKEREPPVKSVFWALFGAIYLCYGMPEVYRVLFEVFGMDPEHEDCQPKLRRQLED 60
Query: 310 VDYVSVEFEGNKLTWQDVAAYK 331
VDYVSVEFE NKL+WQDVAAYK
Sbjct: 61 VDYVSVEFENNKLSWQDVAAYK 82
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 10/208 (4%)
Query: 103 KSPQLSLKSFP-LLSSCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKH 161
K P+ +L + P L +C+PP W + + ALGY L +D++ D A++
Sbjct: 82 KPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDCRPQVMHALGYPLPVTDRIPDITKARN 141
Query: 162 FD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ L L F HP ++K H R + RL ++GQ + ++ E L ++ ++
Sbjct: 142 IELGLGLQLCFLHP--SKHKFEHPRFCYERLEYVGQKIQDIVMAERLLMKHLDAPGKWLQ 199
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI---RKEREPPVKSVFWALFGAIYLC 276
E+ L+ + ++++ L I +++ R+ R P +V A+ G YL
Sbjct: 200 EKHRRLLMNKFCGRYLRDKYLHRFIIYSEQVQDSYEHNRRLRNPATTAVQQAIHGLSYLV 259
Query: 277 FGFPEVYRVLFEVFGMDPEDKECQPKLR 304
+G P+V R++FEVF D E + +P LR
Sbjct: 260 YGKPDVRRLMFEVF--DFEQIQPKPVLR 285
>gi|189485602|ref|YP_001956543.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|170287561|dbj|BAG14082.1| ribonuclease III [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 243
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
R+ FLG +L E RYPRES + + +I NL W + L I+
Sbjct: 44 RMEFLGDSILSAIVAETLYLRYPRESEGKLSQFKAQIISAHNLSSWAREMDLGGCIYLGK 103
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
D ++RE + VF A+ GAIYL GF
Sbjct: 104 SEDTKEARQRESLLCDVFEAVIGAIYLDGGF 134
>gi|194695624|gb|ACF81896.1| unknown [Zea mays]
Length = 181
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 142 ALGYSLEPSDQLGDDNPAKHFDTLL--YLAFQHPFCERNKARHVRAGHSRLCFLGQFVLE 199
LGY L +D++ + A++ + L L F HP ++K H R + RL ++GQ + +
Sbjct: 20 TLGYPLPMNDRIPEITEARNIELGLGLQLCFLHP--SKHKFEHPRFCYERLEYVGQKIQD 77
Query: 200 LAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN-LIFPFDEMDRL--IRK 256
L E L ++ + E+ + + ++++ LQ+ +I+ DR R+
Sbjct: 78 LVMAERLLMKHLDAPGRWLAEKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQDRFEHNRR 137
Query: 257 EREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPK 302
R P SV AL G Y +G P+V R++FEVF + + QPK
Sbjct: 138 LRNPSTTSVQQALHGLAYCVYGKPDVRRLMFEVFDFE----QVQPK 179
>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
Length = 223
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 161 HFDT--LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF LL A H C+ K + RL +LG VL+L EF Q +P +
Sbjct: 11 HFKNQDLLLTALTHKSCKNKK------NNERLEYLGDAVLDLLIGEFLYQEFPEHKEGDL 64
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ L+ ++ ++ KA LQ+ I + +E+ + S F AL GA+YL G
Sbjct: 65 SKMRAALVNEQSFMRFAKAIHLQDFILISSNEETNQGREKPSILSSAFEALIGAVYLEAG 124
Query: 279 FPEVYRVLFEVF 290
+ + +
Sbjct: 125 LERAKDITYHLL 136
>gi|194333018|ref|YP_002014878.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
gi|194310836|gb|ACF45231.1| Ribonuclease III [Prosthecochloris aestuarii DSM 271]
Length = 277
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLG VL+L E + +P + ++ R++L + +A +L N + +
Sbjct: 85 RLEFLGDAVLDLIISEHLYKLFPESDEGALSSTRSKIVNRKSLADFAQAIALGNQLIIGE 144
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
D ++ E + F AL GAIYL G P V R +
Sbjct: 145 SADEEKIRKSEATMADAFEALIGAIYLDKGLPAVQRFI 182
>gi|374708678|ref|ZP_09713112.1| ribonuclease III [Sporolactobacillus inulinus CASD]
Length = 242
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+TLL AF H R + + RL FLG VLEL + + YP S M +
Sbjct: 32 ETLLKQAFTHSSYVNEHRRESQDDYERLEFLGDAVLELLISQHLFKNYPELSEGDMTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ L ++ + S + +IF + ++R + VF A GA+YL G EV
Sbjct: 92 AAIVCETGLFQFASSLSFEEMIFLGRGEEVTGGRKRPSLLADVFEAFVGALYLDQGLQEV 151
Query: 283 YRVLFEV 289
R L +V
Sbjct: 152 ERFLEKV 158
>gi|221633356|ref|YP_002522581.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
gi|221156675|gb|ACM05802.1| ribonuclease III [Thermomicrobium roseum DSM 5159]
Length = 252
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Query: 125 NNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVR 184
N A + DE +++A +ALG + D L L +L++ + +A V
Sbjct: 7 NRAQSSGRDERVVQAMEALGIAFRRPDLL--------RQALTHLSYVYERSRSTQA-AVE 57
Query: 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244
+ RL FLG VLEL EF +R+P S + L+ L +W + L +
Sbjct: 58 EANERLEFLGDAVLELLVSEFLYRRFPTASEGELTAYRAALVRTPTLARWARRFRLDEFL 117
Query: 245 F-PFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
+ E+ R R RE + F A+ GA+YL G V R L +
Sbjct: 118 YLGRSEVPRPGRPVRERILAGAFEAVLGALYLDRGIRVVRRFLHRLL 164
>gi|376297527|ref|YP_005168757.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
gi|323460089|gb|EGB15954.1| ribonuclease III [Desulfovibrio desulfuricans ND132]
Length = 227
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 27/141 (19%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VLEL E +RYP + R + +K SL +
Sbjct: 39 NERLEFLGDAVLELCISEEGFKRYPTAHEGQLT---------RIRSQLVKEQSLAGIARE 89
Query: 247 FDEMDRLIR----------KEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF------ 290
E+DR IR +ER+ + F AL GA++L GF R + ++F
Sbjct: 90 L-ELDRFIRLGRGEELQGGRERDALLADAFEALLGAVFLDGGFEAARRTILDIFEDQWPA 148
Query: 291 -GMDPEDKECQPKLRRQLEDV 310
M PE K+ + +L+ +DV
Sbjct: 149 RAMLPETKDYKSRLQEVAQDV 169
>gi|409097477|ref|ZP_11217501.1| ribonuclease III [Pedobacter agri PB92]
Length = 242
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
TL +AF+H + R+ + RL FLG VL E + YP + + E
Sbjct: 33 TLYKMAFRHRSVAKVLKNGSRSSNERLEFLGDAVLGSVIAELLFKHYPYKEEGFLTEMRS 92
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ R NL + K LI FD+ I+ + + F A+ GAIY+ G+
Sbjct: 93 KIVNRANLNQLAKKIGFDKLI-QFDQRSVSIQTKHNSMLGDAFEAIVGAIYMDKGY 147
>gi|333923291|ref|YP_004496871.1| ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748852|gb|AEF93959.1| Ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 246
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 13/157 (8%)
Query: 132 IDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLC 191
+DEY+ K +G+ NP +LL A H C + RL
Sbjct: 4 LDEYVNRLKAKIGFEW--------SNP-----SLLTQALTHSSCVHESRGQGLHHNQRLE 50
Query: 192 FLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMD 251
FLG VLEL E+ QR+P + + + + +L K + L + +
Sbjct: 51 FLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRMGRGEE 110
Query: 252 RLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
R +ER + F AL GAIYL G R + E
Sbjct: 111 RSGGRERPSILADAFEALLGAIYLDHGLEAARRFVLE 147
>gi|149278306|ref|ZP_01884444.1| ribonuclease III [Pedobacter sp. BAL39]
gi|149231072|gb|EDM36453.1| ribonuclease III [Pedobacter sp. BAL39]
Length = 242
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 163 DTLLY-LAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+T+LY +AF+H + R+ + RL FLG +L E + YP + + E
Sbjct: 31 NTILYQMAFRHRSVAKVLKNGSRSSNERLEFLGDAILGSVVAELLFKNYPYKEEGFLTEM 90
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ R NL + + LI FD+ ++ + + F AL GAIYL G+
Sbjct: 91 RSKIVNRANLNQLARKMGFDQLIV-FDQKTVNVQTKHHSMLGDAFEALIGAIYLDKGY 147
>gi|206901475|ref|YP_002250663.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
gi|206740578|gb|ACI19636.1| ribonuclease III [Dictyoglomus thermophilum H-6-12]
Length = 237
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 120 PPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK 179
++L N D +DE L + K+ G S DN + L + +F+H
Sbjct: 4 KSNKLRNID---LDEILSKVKEKTGISF--------DNKNLIIEALTHPSFKHE------ 46
Query: 180 ARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS 239
H + RL FLG VL + E QRY S + ++ ++ L K K+ +
Sbjct: 47 NPHFEYDNQRLEFLGDAVLNMIITEILFQRYKEASEGILTQKRIYMVKEETLYKKAKSLN 106
Query: 240 LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
L +LI ++ +E+ + +F A GA+YL G+
Sbjct: 107 LGDLILLGKGEEKQGGREKISILSDLFEAFIGALYLDKGYE 147
>gi|373955295|ref|ZP_09615255.1| Ribonuclease 3 [Mucilaginibacter paludis DSM 18603]
gi|373891895|gb|EHQ27792.1| Ribonuclease 3 [Mucilaginibacter paludis DSM 18603]
Length = 241
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
+L LAF+H +N + V+ + RL FLG +L E + YP E + E
Sbjct: 33 SLYRLAFRHKSVAQNVKKGVKNSNERLEFLGDAILGCVVAEVLFKLYPYEDEGFLTELRS 92
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP-VKSVFWALFGAIYLCFGF 279
++ R NL + + + LI +D R++ R+ + F AL GA+YL G+
Sbjct: 93 KIVSRVNLNQLARKLGFEQLI-EYD--SRMVGSTRQGSLLGDAFEALVGAVYLDKGY 146
>gi|392426870|ref|YP_006467864.1| ribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391356833|gb|AFM42532.1| ribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 262
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 139 AKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVL 198
K+ LG +L + +LG D P + L A HP + R + RL FLG +L
Sbjct: 29 GKKELGLNL--AKRLGLDTPP---NRLFITALTHPSYVFENPQFGRENNQRLEFLGDAIL 83
Query: 199 ELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKE 257
+ E+ YP + + ++ L + SL Q L+ E +
Sbjct: 84 DFVIAEYLYLNYPDRPEGELTKMRAAVVNETTLAHKARDISLGQELLLGKGEQ---VSGG 140
Query: 258 RE-PPVKSVFW-ALFGAIYLCFGFPEVYRVLFEVF 290
RE P + + W A+ GAIYL +GF E RV+ E+
Sbjct: 141 RERPSILADAWEAVIGAIYLQYGFQEARRVILEML 175
>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S NL+ + +ER + VF A GA+YL G V
Sbjct: 93 AAVVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WEFLKEI 159
>gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
Length = 245
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S NL+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGNLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
Length = 221
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 175 CERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKW 234
ER +H + RL FLG VL L E+ +YP + + GL+ R NL W
Sbjct: 30 GERRSVKH----NERLEFLGDSVLGLVAAEYIYSKYPEVEEGVLSKIKSGLVSRHNLYLW 85
Query: 235 IKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
L + + RE + + A+ GA+YL GF V ++
Sbjct: 86 ASELDLGAYLALGAGEAATGGRTRESILSNAMEAVLGAVYLDGGFESVKNII 137
>gi|325290420|ref|YP_004266601.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
gi|324965821|gb|ADY56600.1| RNAse III [Syntrophobotulus glycolicus DSM 8271]
Length = 259
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Query: 152 QLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYP 211
+LG +NP + LLY A HP R + RL FLG VL+ E+ +Y
Sbjct: 39 KLGLENPE---NQLLYTALTHPSYTFENPASGRENNQRLEFLGDAVLDFVIGEYLYLKYR 95
Query: 212 RESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFG 271
+ + + ++ L + + + +F +ER + A+ G
Sbjct: 96 DKPEGELTKMRAAVVNESTLARQARGIGIGQALFLGKGEQYSGGRERASILADALEAVIG 155
Query: 272 AIYLCFGFPEV 282
A+YL +GF EV
Sbjct: 156 AVYLQYGFEEV 166
>gi|300775975|ref|ZP_07085834.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
gi|300505108|gb|EFK36247.1| ribonuclease III [Chryseobacterium gleum ATCC 35910]
Length = 254
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 170 FQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRR 229
++ F +N +++ + + RL FLG VL Q YP+ + + + ++ R+
Sbjct: 44 YREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQANEGYLTQMKSKIVNRK 103
Query: 230 NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
NL K + L NL+ + L E ++F AL GA+YL F + R++ E
Sbjct: 104 NLNKLGEDLKLTNLLQKQNSSSAL----GENISGNLFEALIGAVYLDFHYDACKRIILE 158
>gi|449133751|ref|ZP_21769275.1| ribonuclease III [Rhodopirellula europaea 6C]
gi|448887627|gb|EMB17992.1| ribonuclease III [Rhodopirellula europaea 6C]
Length = 296
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + A H A + RL FLG VL L CE+ YP S + +
Sbjct: 80 LLRSALTHA----SGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLTKIKSA 135
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP---VKSVFWALFGAIYLCFGFPE 281
++ RR+ K L + + R + + R P V VF A+ A+Y+ G PE
Sbjct: 136 VVSRRSCGKVACKLGLDQCLI----VGRGVTRNRSYPKSLVSDVFEAVIAALYI-DGGPE 190
Query: 282 VYR 284
+ R
Sbjct: 191 IVR 193
>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
Length = 246
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + + RL FLG VLEL ++ Q++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151
Query: 283 YRVL 286
R L
Sbjct: 152 IRFL 155
>gi|329116187|ref|ZP_08244904.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
gi|333904610|ref|YP_004478481.1| ribonuclease III [Streptococcus parauberis KCTC 11537]
gi|326906592|gb|EGE53506.1| ribonuclease III [Streptococcus parauberis NCFD 2020]
gi|333119875|gb|AEF24809.1| ribonuclease III [Streptococcus parauberis KCTC 11537]
gi|456370486|gb|EMF49382.1| Ribonuclease III [Streptococcus parauberis KRS-02109]
gi|457095933|gb|EMG26404.1| Ribonuclease III [Streptococcus parauberis KRS-02083]
Length = 230
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
LL AF H N+ R + H+ RL FLG VL+L E+ ++YP ++ M ++
Sbjct: 20 NLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFEKYPNKAEGDMSKQR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + + N I ++ + R+ + +F A GA+ L G +V
Sbjct: 79 SMIVREESLAGFSRFCTFDNYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEKV 138
Query: 283 YRVLFEVF 290
+ L++V
Sbjct: 139 RKFLYQVM 146
>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
Length = 246
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + + RL FLG VLEL ++ Q++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151
Query: 283 YRVL 286
R L
Sbjct: 152 IRFL 155
>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
Length = 246
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + + RL FLG VLEL ++ Q++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151
Query: 283 YRVL 286
R L
Sbjct: 152 IRFL 155
>gi|423452850|ref|ZP_17429703.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
gi|401139409|gb|EJQ46971.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
Length = 245
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>gi|423470063|ref|ZP_17446807.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
gi|402437315|gb|EJV69339.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
Length = 245
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>gi|423522321|ref|ZP_17498794.1| ribonuclease 3 [Bacillus cereus HuA4-10]
gi|423558588|ref|ZP_17534890.1| ribonuclease 3 [Bacillus cereus MC67]
gi|401175015|gb|EJQ82218.1| ribonuclease 3 [Bacillus cereus HuA4-10]
gi|401191856|gb|EJQ98878.1| ribonuclease 3 [Bacillus cereus MC67]
Length = 245
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>gi|417304879|ref|ZP_12091876.1| ribonuclease III [Rhodopirellula baltica WH47]
gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
Length = 297
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + A H A + RL FLG VL L CE+ YP S + +
Sbjct: 81 LLRSALTHA----SGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLTKIKSA 136
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP---VKSVFWALFGAIYLCFGFPE 281
++ RR+ K L + + R + + R P V VF A+ A+Y+ G PE
Sbjct: 137 VVSRRSCGKVACKLGLDQCLI----VGRGVTRNRSYPKSLVSDVFEAVIAALYI-DGGPE 191
Query: 282 VYR 284
+ R
Sbjct: 192 IVR 194
>gi|440718234|ref|ZP_20898695.1| ribonuclease III [Rhodopirellula baltica SWK14]
gi|436436569|gb|ELP30300.1| ribonuclease III [Rhodopirellula baltica SWK14]
Length = 297
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + A H A + RL FLG VL L CE+ YP S + +
Sbjct: 81 LLRSALTHA----SGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLTKIKSA 136
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP---VKSVFWALFGAIYLCFGFPE 281
++ RR+ K L + + R + + R P V VF A+ A+Y+ G PE
Sbjct: 137 VVSRRSCGKVACKLGLDQCLI----VGRGVTRNRSYPKSLVSDVFEAVIAALYI-DGGPE 191
Query: 282 VYR 284
+ R
Sbjct: 192 IVR 194
>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
Length = 297
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + A H A + RL FLG VL L CE+ YP S + +
Sbjct: 81 LLRSALTHA----SGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLTKIKSA 136
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP---VKSVFWALFGAIYLCFGFPE 281
++ RR+ K L + + R + + R P V VF A+ A+Y+ G PE
Sbjct: 137 VVSRRSCGKVACKLGLDQCLI----VGRGVTRNRSYPKSLVSDVFEAVIAALYI-DGGPE 191
Query: 282 VYR 284
+ R
Sbjct: 192 IVR 194
>gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
gi|423489025|ref|ZP_17465707.1| ribonuclease 3 [Bacillus cereus BtB2-4]
gi|423494750|ref|ZP_17471394.1| ribonuclease 3 [Bacillus cereus CER057]
gi|423498458|ref|ZP_17475075.1| ribonuclease 3 [Bacillus cereus CER074]
gi|423518539|ref|ZP_17495020.1| ribonuclease 3 [Bacillus cereus HuA2-4]
gi|423592155|ref|ZP_17568186.1| ribonuclease 3 [Bacillus cereus VD048]
gi|423598840|ref|ZP_17574840.1| ribonuclease 3 [Bacillus cereus VD078]
gi|423661311|ref|ZP_17636480.1| ribonuclease 3 [Bacillus cereus VDM022]
gi|423669423|ref|ZP_17644452.1| ribonuclease 3 [Bacillus cereus VDM034]
gi|423674398|ref|ZP_17649337.1| ribonuclease 3 [Bacillus cereus VDM062]
gi|229564349|sp|A9VT87.1|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4]
gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
gi|401150843|gb|EJQ58295.1| ribonuclease 3 [Bacillus cereus CER057]
gi|401160507|gb|EJQ67885.1| ribonuclease 3 [Bacillus cereus CER074]
gi|401160747|gb|EJQ68122.1| ribonuclease 3 [Bacillus cereus HuA2-4]
gi|401232288|gb|EJR38790.1| ribonuclease 3 [Bacillus cereus VD048]
gi|401237110|gb|EJR43567.1| ribonuclease 3 [Bacillus cereus VD078]
gi|401298550|gb|EJS04150.1| ribonuclease 3 [Bacillus cereus VDM034]
gi|401301352|gb|EJS06941.1| ribonuclease 3 [Bacillus cereus VDM022]
gi|401309949|gb|EJS15282.1| ribonuclease 3 [Bacillus cereus VDM062]
gi|402432273|gb|EJV64332.1| ribonuclease 3 [Bacillus cereus BtB2-4]
Length = 245
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>gi|423483439|ref|ZP_17460129.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
gi|401140990|gb|EJQ48545.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
Length = 245
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
gi|365159374|ref|ZP_09355555.1| ribonuclease 3 [Bacillus sp. 7_6_55CFAA_CT2]
gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|363625372|gb|EHL76413.1| ribonuclease 3 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 225
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 13 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 72
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 73 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 132
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 133 WEFLKEI 139
>gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603]
gi|423367893|ref|ZP_17345325.1| ribonuclease 3 [Bacillus cereus VD142]
gi|423511883|ref|ZP_17488414.1| ribonuclease 3 [Bacillus cereus HuA2-1]
gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603]
gi|401082754|gb|EJP91019.1| ribonuclease 3 [Bacillus cereus VD142]
gi|402450144|gb|EJV81978.1| ribonuclease 3 [Bacillus cereus HuA2-1]
Length = 245
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>gi|423612066|ref|ZP_17587927.1| ribonuclease 3 [Bacillus cereus VD107]
gi|401247073|gb|EJR53417.1| ribonuclease 3 [Bacillus cereus VD107]
Length = 245
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGFLKEV 159
>gi|255534075|ref|YP_003094447.1| ribonuclease III [Pedobacter heparinus DSM 2366]
gi|255347059|gb|ACU06385.1| ribonuclease III [Pedobacter heparinus DSM 2366]
Length = 242
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
TL +AF+H + R+ + RL FLG VL E + YP + + E
Sbjct: 33 TLYKMAFRHRSVAKILKNGSRSSNERLEFLGDAVLGSVIAELLFKSYPYKEEGFLTEMRS 92
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ R NL + + LI FD+ ++ + + F AL GA+YL G+
Sbjct: 93 KIVNRANLNQLARKMGFDQLI-VFDQKAVNVQTKHHSMLGDAFEALIGAVYLDKGY 147
>gi|195978496|ref|YP_002123740.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195975201|gb|ACG62727.1| ribonuclease III Rnc [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 231
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 22 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRS 80
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + + S I ++ + RE + +F A GA+ L G EV
Sbjct: 81 TIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRETILGDLFEAFLGALLLDKGIEEVR 140
Query: 284 RVLFEVF 290
R L +V
Sbjct: 141 RFLNQVM 147
>gi|421614937|ref|ZP_16055976.1| ribonuclease III [Rhodopirellula baltica SH28]
gi|408494274|gb|EKJ98893.1| ribonuclease III [Rhodopirellula baltica SH28]
Length = 266
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + A H A + RL FLG VL L CE+ YP S + +
Sbjct: 50 LLRSALTHA----SGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLTKIKSA 105
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP---VKSVFWALFGAIYLCFGFPE 281
++ RR+ K L + + R + + R P V VF A+ A+Y+ G PE
Sbjct: 106 VVSRRSCGKVACKLGLDQCLI----VGRGVTRNRSYPKSLVSDVFEAVIAALYI-DGGPE 160
Query: 282 VYR 284
+ R
Sbjct: 161 IVR 163
>gi|418027978|ref|ZP_12666572.1| Ribonuclease III [Streptococcus thermophilus CNCM I-1630]
gi|354688972|gb|EHE88990.1| Ribonuclease III [Streptococcus thermophilus CNCM I-1630]
Length = 176
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL GFP V
Sbjct: 80 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGFPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNQVM 146
>gi|77416567|sp|Q7UGZ7.2|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 266
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + A H A + RL FLG VL L CE+ YP S + +
Sbjct: 50 LLRSALTHA----SGASHRLASNERLEFLGDSVLGLTVCEWLFNEYPEYSEGDLTKIKSA 105
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP---VKSVFWALFGAIYLCFGFPE 281
++ RR+ K L + + R + + R P V VF A+ A+Y+ G PE
Sbjct: 106 VVSRRSCGKVACKLGLDQCLI----VGRGVTRNRSYPKSLVSDVFEAVIAALYI-DGGPE 160
Query: 282 VYR 284
+ R
Sbjct: 161 IVR 163
>gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271]
gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271]
Length = 245
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGFLKEV 159
>gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273]
gi|423389844|ref|ZP_17367070.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
gi|423418244|ref|ZP_17395333.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273]
gi|401106517|gb|EJQ14478.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
gi|401641935|gb|EJS59652.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
Length = 245
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGFLKEV 159
>gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803]
gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803]
Length = 245
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGFLKEV 159
>gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579]
gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134]
gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264]
gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842]
gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676]
gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185]
gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550]
gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W]
gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171]
gi|384187909|ref|YP_005573805.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
gi|402558825|ref|YP_006601549.1| ribonuclease III [Bacillus thuringiensis HD-771]
gi|410676223|ref|YP_006928594.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|423359115|ref|ZP_17336618.1| ribonuclease 3 [Bacillus cereus VD022]
gi|423385352|ref|ZP_17362608.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
gi|423412346|ref|ZP_17389466.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
gi|423425985|ref|ZP_17403016.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
gi|423431869|ref|ZP_17408873.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
gi|423437304|ref|ZP_17414285.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
gi|423503473|ref|ZP_17480065.1| ribonuclease 3 [Bacillus cereus HD73]
gi|423528290|ref|ZP_17504735.1| ribonuclease 3 [Bacillus cereus HuB1-1]
gi|423561745|ref|ZP_17538021.1| ribonuclease 3 [Bacillus cereus MSX-A1]
gi|423582059|ref|ZP_17558170.1| ribonuclease 3 [Bacillus cereus VD014]
gi|423585742|ref|ZP_17561829.1| ribonuclease 3 [Bacillus cereus VD045]
gi|423628942|ref|ZP_17604691.1| ribonuclease 3 [Bacillus cereus VD154]
gi|423635380|ref|ZP_17611033.1| ribonuclease 3 [Bacillus cereus VD156]
gi|423641070|ref|ZP_17616688.1| ribonuclease 3 [Bacillus cereus VD166]
gi|423649712|ref|ZP_17625282.1| ribonuclease 3 [Bacillus cereus VD169]
gi|423656708|ref|ZP_17632007.1| ribonuclease 3 [Bacillus cereus VD200]
gi|434376952|ref|YP_006611596.1| ribonuclease III [Bacillus thuringiensis HD-789]
gi|449090792|ref|YP_007423233.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452200288|ref|YP_007480369.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|38372411|sp|Q819V8.1|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735367|sp|B7IUK8.1|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735368|sp|B7HDX2.1|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579]
gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134]
gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264]
gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842]
gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W]
gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550]
gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185]
gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676]
gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171]
gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
gi|401084987|gb|EJP93233.1| ribonuclease 3 [Bacillus cereus VD022]
gi|401104414|gb|EJQ12391.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
gi|401110732|gb|EJQ18631.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
gi|401116625|gb|EJQ24463.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
gi|401120459|gb|EJQ28255.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
gi|401202002|gb|EJR08867.1| ribonuclease 3 [Bacillus cereus MSX-A1]
gi|401212938|gb|EJR19679.1| ribonuclease 3 [Bacillus cereus VD014]
gi|401233088|gb|EJR39584.1| ribonuclease 3 [Bacillus cereus VD045]
gi|401268487|gb|EJR74535.1| ribonuclease 3 [Bacillus cereus VD154]
gi|401278131|gb|EJR84067.1| ribonuclease 3 [Bacillus cereus VD156]
gi|401280131|gb|EJR86053.1| ribonuclease 3 [Bacillus cereus VD166]
gi|401282992|gb|EJR88889.1| ribonuclease 3 [Bacillus cereus VD169]
gi|401290449|gb|EJR96143.1| ribonuclease 3 [Bacillus cereus VD200]
gi|401635408|gb|EJS53163.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
gi|401787477|gb|AFQ13516.1| ribonuclease III [Bacillus thuringiensis HD-771]
gi|401875509|gb|AFQ27676.1| ribonuclease III [Bacillus thuringiensis HD-789]
gi|402451953|gb|EJV83772.1| ribonuclease 3 [Bacillus cereus HuB1-1]
gi|402459694|gb|EJV91431.1| ribonuclease 3 [Bacillus cereus HD73]
gi|409175352|gb|AFV19657.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|449024549|gb|AGE79712.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452105681|gb|AGG02621.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 245
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WEFLKEI 159
>gi|228477722|ref|ZP_04062351.1| ribonuclease III [Streptococcus salivarius SK126]
gi|340398604|ref|YP_004727629.1| ribonuclease 3 [Streptococcus salivarius CCHSS3]
gi|387784355|ref|YP_006070438.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Streptococcus
salivarius JIM8777]
gi|228250611|gb|EEK09822.1| ribonuclease III [Streptococcus salivarius SK126]
gi|338742597|emb|CCB93102.1| ribonuclease 3 (Ribonuclease III) (RNAse III) [Streptococcus
salivarius CCHSS3]
gi|338745237|emb|CCB95603.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Streptococcus
salivarius JIM8777]
Length = 229
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + +RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 80 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNQVM 146
>gi|387761093|ref|YP_006068070.1| ribonuclease III [Streptococcus salivarius 57.I]
gi|339291860|gb|AEJ53207.1| ribonuclease III [Streptococcus salivarius 57.I]
Length = 237
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + +RYP + M +
Sbjct: 29 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRS 87
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 88 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 147
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 148 KFLNQVM 154
>gi|383788235|ref|YP_005472803.1| ribonuclease III [Caldisericum exile AZM16c01]
gi|381363871|dbj|BAL80700.1| ribonuclease III [Caldisericum exile AZM16c01]
Length = 246
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPM-RERVFGLIGRRNLPKWIKAASLQNLIF 245
+ RL FLG VL LA + L Y + + R+R + L+ ++L K + + +L+
Sbjct: 52 NERLEFLGDSVLSLAITHYLLCTYKDLTEGELSRKRAY-LVSEKSLSKKAEIIGIGDLML 110
Query: 246 PFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPED 296
++ K + + F AL AI+LCFGF E + + +F + E+
Sbjct: 111 FGKGENKSGGKFKGAILADAFEALIAAIFLCFGFEEAEKFITNIFKTELEN 161
>gi|294054381|ref|YP_003548039.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
gi|293613714|gb|ADE53869.1| ribonuclease III [Coraliomargarita akajimensis DSM 45221]
Length = 228
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 164 TLLYLAFQHP----FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+LL +A +HP E N+ RL FLG VL+L E+ Q +P E +
Sbjct: 20 SLLEMALKHPSLDIGVEDNQ---------RLEFLGDAVLDLVIAEYLYQHFPSEEEGRLD 70
Query: 220 ERVFGLIGRRNL-PKWIKAASLQNLIFPFDEMDRLIRKE-REPPVKSVFWALFGAIYLCF 277
R L+ + L PK ++ N + E R E + ++ AL GAIYL
Sbjct: 71 RRRASLVSGKALAPKALELG--LNTVLVVSEAQRTHHPEPSKGMLEDALEALIGAIYLDA 128
Query: 278 GFPEVYRVLFEVF 290
G R + +F
Sbjct: 129 GLDAARRSIRHIF 141
>gi|445378760|ref|ZP_21426909.1| ribonuclease III [Streptococcus thermophilus MTCC 5460]
gi|445392984|ref|ZP_21428634.1| ribonuclease III [Streptococcus thermophilus MTCC 5461]
gi|444749392|gb|ELW74294.1| ribonuclease III [Streptococcus thermophilus MTCC 5461]
gi|444749656|gb|ELW74547.1| ribonuclease III [Streptococcus thermophilus MTCC 5460]
Length = 229
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 80 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNQVM 146
>gi|392330868|ref|ZP_10275483.1| ribonuclease III [Streptococcus canis FSL Z3-227]
gi|391418547|gb|EIQ81359.1| ribonuclease III [Streptococcus canis FSL Z3-227]
Length = 230
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 79 SMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>gi|418017606|ref|ZP_12657162.1| ribonuclease III [Streptococcus salivarius M18]
gi|345526455|gb|EGX29766.1| ribonuclease III [Streptococcus salivarius M18]
Length = 229
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 80 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNQVM 146
>gi|58584360|ref|YP_197933.1| ribonuclease III [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|75498100|sp|Q5GTI3.1|RNC_WOLTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|58418676|gb|AAW70691.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 243
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
D +L A HP + +++ + RL FLG +L + + +P+E + R
Sbjct: 29 DAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKEKEGALARRK 88
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKERE-PPVKSVFWALFGAIYLCFGFPE 281
L+ + K L N I + +R +R +++ AL GAIY+ GF
Sbjct: 89 TDLVCGNTIANVAKEIKLGNFII-MNNSERCNGGKRNLKNLENALEALIGAIYIDGGFAN 147
Query: 282 VYR 284
V +
Sbjct: 148 VKK 150
>gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 262
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 50 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 109
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 110 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 169
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 170 WEFLKEI 176
>gi|383786986|ref|YP_005471555.1| ribonuclease III [Fervidobacterium pennivorans DSM 9078]
gi|383109833|gb|AFG35436.1| ribonuclease III [Fervidobacterium pennivorans DSM 9078]
Length = 245
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK-ARHVRAGHSRLCFLG 194
L E ++ LGY + NP F+ L + ++ + E N+ R V+ + RL FLG
Sbjct: 12 LGELQEKLGYHFK--------NPMLLFNALCHSSYAY---EVNQLGRDVK-NNERLEFLG 59
Query: 195 QFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI 254
V+EL C+ +YP + M + + L + L IF ++
Sbjct: 60 DAVVELVVCDILYNKYPDATEGEMAKTKGAVASEEVLTEIASQYELGKYIFLGKGEEKTG 119
Query: 255 RKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
+ R + F A+ AIYL G +V V E F
Sbjct: 120 GRTRSSIIADTFEAVCAAIYLDGGLKKVMEVFGEKF 155
>gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621]
gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621]
Length = 245
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANEMSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLEIV 152
Query: 283 YRVLFEV 289
+ L EV
Sbjct: 153 WGYLKEV 159
>gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames]
gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne]
gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488]
gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442]
gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193]
gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465]
gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174]
gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W]
gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99]
gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108]
gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820]
gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102]
gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201]
gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248]
gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066]
gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055]
gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America
USA6153]
gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B]
gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum]
gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267744|ref|YP_005120456.1| Ribonuclease III [Bacillus cereus F837/76]
gi|386737671|ref|YP_006210852.1| ribonuclease 3 [Bacillus anthracis str. H9401]
gi|421507389|ref|ZP_15954309.1| ribonuclease III [Bacillus anthracis str. UR-1]
gi|421639604|ref|ZP_16080195.1| ribonuclease III [Bacillus anthracis str. BF1]
gi|423550402|ref|ZP_17526729.1| ribonuclease 3 [Bacillus cereus ISP3191]
gi|38372420|sp|Q81WI8.1|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81395098|sp|Q6HEW6.1|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735366|sp|B7JJT6.1|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807235|sp|C3P5Q0.1|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807236|sp|C3L778.1|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807237|sp|C1EP73.1|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames]
gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne]
gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488]
gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193]
gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442]
gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465]
gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174]
gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W]
gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108]
gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99]
gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820]
gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102]
gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201]
gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248]
gi|364513544|gb|AEW56943.1| Ribonuclease III [Bacillus cereus F837/76]
gi|384387523|gb|AFH85184.1| Ribonuclease 3 [Bacillus anthracis str. H9401]
gi|401190018|gb|EJQ97068.1| ribonuclease 3 [Bacillus cereus ISP3191]
gi|401822523|gb|EJT21673.1| ribonuclease III [Bacillus anthracis str. UR-1]
gi|403393269|gb|EJY90514.1| ribonuclease III [Bacillus anthracis str. BF1]
Length = 245
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|251781986|ref|YP_002996288.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|408401236|ref|YP_006859199.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410494313|ref|YP_006904159.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|417752716|ref|ZP_12400893.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|417928266|ref|ZP_12571654.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|242390615|dbj|BAH81074.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|333771523|gb|EGL48458.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|340766140|gb|EGR88666.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|407967464|dbj|BAM60702.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|410439473|emb|CCI62101.1| ribonuclease III [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 230
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 79 SMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLQQVM 146
>gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9]
gi|386086915|ref|YP_006002789.1| ribonuclease 3 [Streptococcus thermophilus ND03]
gi|386344992|ref|YP_006041156.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
gi|387910019|ref|YP_006340325.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
gi|122267372|sp|Q03K17.1|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9]
gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03]
gi|339278453|emb|CCC20201.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
gi|387574954|gb|AFJ83660.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
Length = 229
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 80 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNQVM 146
>gi|325105464|ref|YP_004275118.1| ribonuclease III [Pedobacter saltans DSM 12145]
gi|324974312|gb|ADY53296.1| ribonuclease III [Pedobacter saltans DSM 12145]
Length = 242
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
+L +AF+H + V+ + RL FLG VL E + YP + + E
Sbjct: 33 SLYRMAFRHKSIALGIKKGVKNSNERLEFLGDAVLGAVVAEVLFKMYPYKDEGFLTEMRS 92
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ R NL + K LI FD I ++ + F AL GA+YL G+
Sbjct: 93 KIVSRANLNQLGKKLGFNKLI-EFDPSTVNISSKQSSLLGDAFEALVGAVYLDKGY 147
>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
Length = 237
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 168 LAFQHP--FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
+AF H E+ A+H+ + RL FLG V+EL EF +++P + + + +
Sbjct: 29 MAFSHSSYTNEKRIAKHLN--YERLEFLGDAVVELTTSEFLFKKFPNLAEGELTKLRASI 86
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
+ + L K+ +L IF +++ + R + +F + GA+YL G V
Sbjct: 87 VCEKTLVKYALQLNLDKCIFLGKGEEKMGGRSRAALLADIFESFTGAMYLEAGLETV 143
>gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3]
gi|423401309|ref|ZP_17378482.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
gi|423457968|ref|ZP_17434765.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
gi|423477987|ref|ZP_17454702.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3]
gi|401148352|gb|EJQ55845.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
gi|401654299|gb|EJS71842.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
gi|402428149|gb|EJV60246.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
Length = 245
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
gi|407706308|ref|YP_006829893.1| hypothetical protein MC28_3072 [Bacillus thuringiensis MC28]
gi|423378312|ref|ZP_17355596.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
gi|423441420|ref|ZP_17418326.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
gi|423448354|ref|ZP_17425233.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
gi|423464494|ref|ZP_17441262.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
gi|423533836|ref|ZP_17510254.1| ribonuclease 3 [Bacillus cereus HuB2-9]
gi|423540895|ref|ZP_17517286.1| ribonuclease 3 [Bacillus cereus HuB4-10]
gi|423547133|ref|ZP_17523491.1| ribonuclease 3 [Bacillus cereus HuB5-5]
gi|423623075|ref|ZP_17598853.1| ribonuclease 3 [Bacillus cereus VD148]
gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
gi|401128948|gb|EJQ36631.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
gi|401172083|gb|EJQ79304.1| ribonuclease 3 [Bacillus cereus HuB4-10]
gi|401178854|gb|EJQ86027.1| ribonuclease 3 [Bacillus cereus HuB5-5]
gi|401259848|gb|EJR66022.1| ribonuclease 3 [Bacillus cereus VD148]
gi|401636578|gb|EJS54332.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
gi|402418081|gb|EJV50381.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
gi|402420761|gb|EJV53032.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
gi|402464055|gb|EJV95755.1| ribonuclease 3 [Bacillus cereus HuB2-9]
gi|407383993|gb|AFU14494.1| Ribonuclease 3 [Bacillus thuringiensis MC28]
Length = 245
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987]
gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241]
gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97]
gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187]
gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1]
gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293]
gi|375285772|ref|YP_005106211.1| ribonuclease III [Bacillus cereus NC7401]
gi|384181662|ref|YP_005567424.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
gi|402556030|ref|YP_006597301.1| ribonuclease III [Bacillus cereus FRI-35]
gi|423353551|ref|ZP_17331178.1| ribonuclease 3 [Bacillus cereus IS075]
gi|423374354|ref|ZP_17351692.1| ribonuclease 3 [Bacillus cereus AND1407]
gi|423395850|ref|ZP_17373051.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
gi|423406726|ref|ZP_17383875.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
gi|423567256|ref|ZP_17543503.1| ribonuclease 3 [Bacillus cereus MSX-A12]
gi|423574545|ref|ZP_17550664.1| ribonuclease 3 [Bacillus cereus MSX-D12]
gi|423604524|ref|ZP_17580417.1| ribonuclease 3 [Bacillus cereus VD102]
gi|423615890|ref|ZP_17591724.1| ribonuclease 3 [Bacillus cereus VD115]
gi|81409451|sp|Q732M1.1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735369|sp|B7HLI2.1|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807238|sp|B9IVD8.1|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987]
gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241]
gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97]
gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187]
gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1]
gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293]
gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354299|dbj|BAL19471.1| ribonuclease III [Bacillus cereus NC7401]
gi|401089364|gb|EJP97535.1| ribonuclease 3 [Bacillus cereus IS075]
gi|401094266|gb|EJQ02348.1| ribonuclease 3 [Bacillus cereus AND1407]
gi|401212070|gb|EJR18816.1| ribonuclease 3 [Bacillus cereus MSX-D12]
gi|401214344|gb|EJR21074.1| ribonuclease 3 [Bacillus cereus MSX-A12]
gi|401245144|gb|EJR51502.1| ribonuclease 3 [Bacillus cereus VD102]
gi|401260427|gb|EJR66600.1| ribonuclease 3 [Bacillus cereus VD115]
gi|401653592|gb|EJS71136.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
gi|401660016|gb|EJS77499.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
gi|401797240|gb|AFQ11099.1| ribonuclease III [Bacillus cereus FRI-35]
Length = 245
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|55821300|ref|YP_139742.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
gi|55823213|ref|YP_141654.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
gi|81559233|sp|Q5LZ68.1|RNC_STRT1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81560422|sp|Q5M3S3.1|RNC_STRT2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|55737285|gb|AAV60927.1| ribonuclease III [Streptococcus thermophilus LMG 18311]
gi|55739198|gb|AAV62839.1| ribonuclease III [Streptococcus thermophilus CNRZ1066]
Length = 237
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 29 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 87
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 88 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 147
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 148 KFLNQVM 154
>gi|322373156|ref|ZP_08047692.1| ribonuclease III [Streptococcus sp. C150]
gi|419706593|ref|ZP_14234111.1| Ribonuclease 3 [Streptococcus salivarius PS4]
gi|321278198|gb|EFX55267.1| ribonuclease III [Streptococcus sp. C150]
gi|383283628|gb|EIC81574.1| Ribonuclease 3 [Streptococcus salivarius PS4]
Length = 229
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 80 TIVREESLAGFTKACGFEQFIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNKVM 146
>gi|421452638|ref|ZP_15901999.1| Ribonuclease III [Streptococcus salivarius K12]
gi|400183069|gb|EJO17331.1| Ribonuclease III [Streptococcus salivarius K12]
Length = 247
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + +RYP + M +
Sbjct: 39 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRS 97
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 98 TIVREESLAGFTKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 157
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 158 KFLNQVM 164
>gi|451344225|ref|ZP_21913285.1| ribonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449336939|gb|EMD16107.1| ribonuclease III [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 232
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 162 FDTLLYL--AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
F +L Y AF H N+A++ + RL F+G VL+L E+ + YP +
Sbjct: 14 FHSLKYYKQAFTHS-SYANEAQNKLEDYERLEFMGDAVLQLFVSEYLFKSYPDYPEGELT 72
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
L+ +L K+ + L+ LI+ ++ ++R+ + +F + GA+YL G
Sbjct: 73 TLRSKLVREESLAKFARELRLEELIYLGVGEEKSGGRDRDSVLCDIFESFVGALYLDCGK 132
Query: 280 PEVYRVL 286
EV ++L
Sbjct: 133 KEVIKIL 139
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VLELA +Q + + + + ++ +L + +L +F
Sbjct: 60 NERLEFLGDAVLELAVSHLLMQMFAESNEGDLSKLRAAVVNETSLAALAREINLGEFLFL 119
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
D+ + ++ + F A+ GAIY GFP+V+ V+ ++F
Sbjct: 120 GKGEDQCQGRTKDSLLSDAFEAVLGAIYQDSGFPKVFPVIQKLF 163
>gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L]
gi|81686565|sp|Q636H7.1|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L]
Length = 245
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGGLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|225868184|ref|YP_002744132.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
gi|259646553|sp|C0MCR4.1|RNC_STRS7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|225701460|emb|CAW98596.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus]
Length = 230
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 80 TIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILGDLFEAFLGALLLDKGIEEVR 139
Query: 284 RVLFEVF 290
R L +V
Sbjct: 140 RFLNQVM 146
>gi|262277162|ref|ZP_06054955.1| ribonuclease III [alpha proteobacterium HIMB114]
gi|262224265|gb|EEY74724.1| ribonuclease III [alpha proteobacterium HIMB114]
Length = 225
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 170 FQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRR 229
+ F ++K+ ++ + RL FLG VL L + YP++S + +++ L+ +
Sbjct: 23 IEQAFTHKSKSVNINNNNERLEFLGDRVLGLVIASYLNDNYPKDSEGVLDKKLASLVNKE 82
Query: 230 NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEV 289
K I + + + E + + + + + ++ GA+++ GF + + + ++
Sbjct: 83 TCSKIISSLEIDRFL-SLSEAQKQNKAGNKKILGDLCESIIGAVFMDKGFEQTKKFILKI 141
Query: 290 FG----------MDPEDK--ECQPKLRRQLEDVDYVS 314
+ +DP+ K E KL ++L Y+S
Sbjct: 142 WKENLKNTTQVFIDPKTKLQEYSLKLYKKLPVYKYIS 178
>gi|310831171|ref|YP_003969814.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
virus BV-PW1]
gi|309386355|gb|ADO67215.1| putative dsRNA-specific ribonuclease III [Cafeteria roenbergensis
virus BV-PW1]
Length = 362
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL +LG V++L + RYP++ M + + + NL K + L
Sbjct: 101 YERLEYLGDRVIKLIVSMYLFHRYPKQDEGFMTKLQTVIEDKNNLSKMSRDMGLSKYFII 160
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
+++ + +E E + +F A FGA+YL GF
Sbjct: 161 SKQIENIRGREAEKFNEDIFEAFFGALYLSNGF 193
>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
gi|189043318|sp|A4IM67.1|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
Length = 246
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + RL FLG VLEL ++ Q++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDVV 151
Query: 283 YRVL 286
R L
Sbjct: 152 LRFL 155
>gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cytotoxicus NVH 391-98]
gi|189043291|sp|A7GRH9.1|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98]
Length = 245
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLDTV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str.
A2012]
gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam]
Length = 262
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 50 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 109
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA+YL G V
Sbjct: 110 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETV 169
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 170 WGFLKEI 176
>gi|312863862|ref|ZP_07724100.1| ribonuclease III [Streptococcus vestibularis F0396]
gi|322516541|ref|ZP_08069457.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
gi|311101398|gb|EFQ59603.1| ribonuclease III [Streptococcus vestibularis F0396]
gi|322124929|gb|EFX96349.1| ribonuclease III [Streptococcus vestibularis ATCC 49124]
Length = 229
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG L+L + +RYP + M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAALQLVISVYLYKRYPNKPEGEMSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + KA + I ++ +ER + ++ A GA+YL G P V
Sbjct: 80 TIVREESLAGFSKACGFEQYIRLGKGEEKSGGRERATILGDLWEAFLGALYLDQGLPAVE 139
Query: 284 RVLFEVF 290
+ L +V
Sbjct: 140 KFLNQVM 146
>gi|334340306|ref|YP_004545286.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334091660|gb|AEG60000.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 249
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H LL A H C H + RL FLG VLEL E Q +P + + +
Sbjct: 20 HNPALLTQALTHSSCVHESRGHGLCHNQRLEFLGDAVLELLISEHLYQMFPDRTEGELTK 79
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
+ + +L K + L + +R +ER + F AL GAIYL G
Sbjct: 80 KRAASVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEALLGAIYLDQGL- 138
Query: 281 EVYR 284
EV R
Sbjct: 139 EVTR 142
>gi|414564398|ref|YP_006043359.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338847463|gb|AEJ25675.1| ribonuclease III [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 231
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 22 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRS 80
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 81 TIVREESLAGFSRYCSFDAYIKLGKGEEKSGGRHRDTILGDLFEAFLGALLLDKGIEEVR 140
Query: 284 RVLFEVF 290
R L +V
Sbjct: 141 RFLNQVM 147
>gi|222152723|ref|YP_002561900.1| ribonuclease III [Streptococcus uberis 0140J]
gi|254807903|sp|B9DRH1.1|RNC_STRU0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|222113536|emb|CAR41327.1| ribonuclease III [Streptococcus uberis 0140J]
Length = 230
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ ++YP ++ + ++
Sbjct: 20 TLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFKKYPHKAEGELSKQR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + + + I ++ + R+ + +F A GA+ L G EV
Sbjct: 79 SMIVREESLASFSRHCAFEPYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEEV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLNQVM 146
>gi|319937586|ref|ZP_08011991.1| ribonuclease III [Coprobacillus sp. 29_1]
gi|319807426|gb|EFW04035.1| ribonuclease III [Coprobacillus sp. 29_1]
Length = 232
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
AF H N+A H + RL F+G VL+L +F +P + L+
Sbjct: 23 AFTHA-SYANEAHHYNKDYERLEFMGDAVLQLYVSDFLFHLFPDVPEGTLTTLRSKLVRE 81
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
+L ++ K L L+F ++ +ERE + ++F + GA+YL G EV ++L
Sbjct: 82 ESLARFSKELGLGELLFLGVGEEKSGGRERESVLANIFESFIGALYLDCGKDEVIKIL 139
>gi|312131056|ref|YP_003998396.1| rnase iii [Leadbetterella byssophila DSM 17132]
gi|311907602|gb|ADQ18043.1| RNAse III [Leadbetterella byssophila DSM 17132]
Length = 242
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 165 LLY-LAFQHPFCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
LLY LAF+H + + R + RL FLG VL L E+ ++YP ++ + E
Sbjct: 32 LLYQLAFRHTSASKESMFKGFRESNERLEFLGDAVLGLIVGEYLFKKYPFKNEGFLTEIR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
++ R +L + L+NLI E D +R + AL GAIYL G+
Sbjct: 92 SRIVNRESLNNVGRRLGLENLI----ESDGARNFQRTSLLGDAMEALIGAIYLDKGYK 145
>gi|404329166|ref|ZP_10969614.1| ribonuclease III [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 242
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL+ AF H + RL FLG V+EL ++ + YP S M +
Sbjct: 32 EELLFEAFTHSSYVNEHREENLENYERLEFLGDAVMELMVSQYLFKHYPGLSEGDMTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVK-SVFWALFGAIYLCFGFPE 281
++ L + + S LIF +++ + P + VF A GA+YL G
Sbjct: 92 AAIVCETGLVMFASSLSFDQLIF-LGRGEKVTGGQNRPGLLCDVFEAFVGALYLDQGLEA 150
Query: 282 VYRVLFEVF-----------GMDPEDKECQPKLRRQLEDVDY-VSVEFEGNK 321
V R L +V MD + + + R+ L ++DY V++E +G +
Sbjct: 151 VGRFLKQVVYPRIDDGTFSHVMDFKSQLQETVQRQDLGELDYAVTMEMDGER 202
>gi|392968965|ref|ZP_10334381.1| ribonuclease III [Fibrisoma limi BUZ 3]
gi|387843327|emb|CCH56435.1| ribonuclease III [Fibrisoma limi BUZ 3]
Length = 254
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 153 LGDDNPAKHFDTLLY-LAFQHPFCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRY 210
+G A+ F+ LY LA +H + A R + RL +LG VL + E+ +RY
Sbjct: 32 IGHIIGARPFNIGLYQLALRHTSASKATAIEGFRESNERLEYLGDAVLGMVIAEYLFKRY 91
Query: 211 PRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW--- 267
P + + E ++ R L + L LI FD + R P ++ +
Sbjct: 92 PYKDEGFLTEIRSRIVNRETLNGISRKIGLDRLI-EFDGS-----RTRSLPARTSMYGDA 145
Query: 268 --ALFGAIYLCFGFPEVYRVLFE 288
AL GA+YL GFP R + +
Sbjct: 146 LEALVGAVYLDKGFPFTRRFILK 168
>gi|422758515|ref|ZP_16812277.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322411350|gb|EFY02258.1| ribonuclease III [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 230
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 79 SMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEV 138
Query: 283 YRVL 286
R L
Sbjct: 139 RRFL 142
>gi|375008162|ref|YP_004981795.1| ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287011|gb|AEV18695.1| Ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 246
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + + RL FLG VLEL ++ Q++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSEGQLTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMEAV 151
Query: 283 YRVL 286
L
Sbjct: 152 LHFL 155
>gi|225870877|ref|YP_002746824.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
gi|254807900|sp|C0M8Y3.1|RNC_STRE4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|225700281|emb|CAW94534.1| ribonuclease III [Streptococcus equi subsp. equi 4047]
Length = 230
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 21 LLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 80 TIVREESLAGFSRYCSFDAYIKLGRGEEKSGGRHRDTILGDLFEAFLGALLLDKGIEEVR 139
Query: 284 RVLFEVF 290
R L +V
Sbjct: 140 RFLNQVM 146
>gi|170017643|ref|YP_001728562.1| ribonuclease III [Leuconostoc citreum KM20]
gi|414597556|ref|ZP_11447120.1| Ribonuclease 3 [Leuconostoc citreum LBAE E16]
gi|421877830|ref|ZP_16309367.1| Ribonuclease 3 [Leuconostoc citreum LBAE C10]
gi|421878755|ref|ZP_16310232.1| Ribonuclease 3 [Leuconostoc citreum LBAE C11]
gi|238688973|sp|B1N016.1|RNC_LEUCK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|169804500|gb|ACA83118.1| dsRNA-specific ribonuclease [Leuconostoc citreum KM20]
gi|372556359|emb|CCF25487.1| Ribonuclease 3 [Leuconostoc citreum LBAE C10]
gi|390447241|emb|CCF26352.1| Ribonuclease 3 [Leuconostoc citreum LBAE C11]
gi|390481677|emb|CCF29181.1| Ribonuclease 3 [Leuconostoc citreum LBAE E16]
Length = 233
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++++ E+ +RYP + E ++ R+ + + A L I
Sbjct: 45 YQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRVAHLNEGIRL 104
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR----VLFEVFGMDPEDK--ECQ 300
+ ++R+ ++ ++ A GA+YL GF V + LF D D+ + +
Sbjct: 105 GKGEEMSGARDRDSLLEDIWEAFIGALYLDQGFEAVRKFLDQTLFAAVDTDFFDRFIDFK 164
Query: 301 PKLRRQLE-----DVDY 312
+L+ +L+ D+DY
Sbjct: 165 SRLQEKLQKNGAVDIDY 181
>gi|357238456|ref|ZP_09125793.1| ribonuclease III [Streptococcus ictaluri 707-05]
gi|356753179|gb|EHI70300.1| ribonuclease III [Streptococcus ictaluri 707-05]
Length = 230
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 SLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFDKYPKKNEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 79 SMIVREESLAGFSRFCSFDTHIKLGKGEEKSGGRNRDMILGDLFEAFLGALLLDKGVDEV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLNQVM 146
>gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389]
gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389]
Length = 245
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ Q+YP S + +
Sbjct: 33 EKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L ++ S +L+ + +ER + VF A GA YL G V
Sbjct: 93 AAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGAFYLDQGLETV 152
Query: 283 YRVLFEV 289
+ L E+
Sbjct: 153 WGFLKEI 159
>gi|335429770|ref|ZP_08556668.1| ribonuclease III [Haloplasma contractile SSD-17B]
gi|334889780|gb|EGM28065.1| ribonuclease III [Haloplasma contractile SSD-17B]
Length = 239
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLG VLELA + P + M +R + +L + +L LI
Sbjct: 50 RLEFLGDAVLELAMSRYLFLNLPDVNEGVMTKRRAQYVCEPSLELYANKINLGKLIRLGK 109
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEV 289
+ ++R + F AL GAIYL GF +VY L +V
Sbjct: 110 GEEHTGGRKRPAILADAFEALLGAIYLDLGFDQVYDFLGKV 150
>gi|311029996|ref|ZP_07708086.1| ribonuclease III [Bacillus sp. m3-13]
Length = 247
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H + LLY AF H R + RL FLG VLEL +F ++YP S + +
Sbjct: 32 HNEKLLYQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTISQFLYKKYPMMSEGQLTK 91
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
++ +L + S + + + R + VF A GA+YL G
Sbjct: 92 LRASIVCEPSLVSFANDLSFGQYVLLGKGEEITGGRARPALLADVFEAFIGALYLDLGLE 151
Query: 281 EVYRVL 286
V++ L
Sbjct: 152 TVFQFL 157
>gi|402846369|ref|ZP_10894682.1| ribonuclease III [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402268070|gb|EJU17457.1| ribonuclease III [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 265
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 168 LAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIG 227
LAF+H + + + RL FLG VL A + QR+P M +R ++G
Sbjct: 41 LAFRHSSVSKTDKEGFKLNNERLEFLGDSVLATAMSHYLYQRHPHWDEGEMSKRRGAIVG 100
Query: 228 RRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS------VFWALFGAIYLCFGF 279
R+ + N + +DRL++ RE S AL GAI+L G+
Sbjct: 101 RK----------VNNAVAQRMGLDRLLQIRREARQGSTDIYGNTLEALIGAIFLDQGY 148
>gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514]
gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514]
Length = 231
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 165 LLYLAFQHPFC---ERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
LL LA HP +R +H + RL FLG VL+L ++P P+ +
Sbjct: 20 LLQLALTHPSVAHEQRTPVQH----NQRLEFLGDAVLQLVLTHELYSKFPDFGEGPLTKA 75
Query: 222 VFGLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
L+ RR L + +A +L +LI E R R + F AL GAI+L GF
Sbjct: 76 RAKLVNRRALAEQGRALNLGAHLILSRGEEAHGGRL-RPSALADTFEALLGAIFLDGGFE 134
Query: 281 EVYRVLFEVF 290
V + L F
Sbjct: 135 AVEKFLLARF 144
>gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b]
gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b]
Length = 259
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H N+ R +R + RL FLG VLEL F + YP S + +
Sbjct: 47 LLMQAFTHS-SYVNEQRGLRKDNERLEFLGDAVLELTVSRFLYETYPERSEGELTKLRAA 105
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ +L + +A + + I + ++R + VF + GA+YL G V R
Sbjct: 106 IVCEPSLVNFAEAFAFSDFILLGKGEELTGGRKRPALLADVFESYIGALYLDQGIEAVER 165
Query: 285 VLFEV 289
L E
Sbjct: 166 FLAEA 170
>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
gi|81653364|sp|Q7M840.1|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
Length = 238
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VL+L EF ++P+ + + L+ + K + SL IF
Sbjct: 36 NERLEFLGDAVLDLVIGEFLFLKFPKADEGELSKMRASLVNEKGFAKLAERVSLGRHIFI 95
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP----EVYRVLFEVF 290
+ + +E+ + + F A GAIYL G V+R+L EV+
Sbjct: 96 SNAEENNKGREKPSLLSNAFEATMGAIYLETGLSVVREVVHRLLDEVY 143
>gi|229140493|ref|ZP_04269048.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
gi|228643054|gb|EEK99330.1| Ribonuclease 3 [Bacillus cereus BDRD-ST26]
Length = 210
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
AF H + + RL FLG VLEL ++ Q+YP S + + ++
Sbjct: 4 AFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCE 63
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
+L ++ S +L+ + +ER + VF A GA+YL G V+ L E
Sbjct: 64 PSLVRFANELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLETVWGFLKE 123
Query: 289 V 289
+
Sbjct: 124 I 124
>gi|357040499|ref|ZP_09102286.1| Ribonuclease 3 [Desulfotomaculum gibsoniae DSM 7213]
gi|355356590|gb|EHG04376.1| Ribonuclease 3 [Desulfotomaculum gibsoniae DSM 7213]
Length = 246
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 165 LLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL LA H F N+ R + RL FLG VLEL +++ + +P ++ + +
Sbjct: 24 LLRLALVHSSFTYENRGRE-EHNNERLEFLGDAVLELIISDYYYRSFPHKTEGELTKMRA 82
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
+ +L + L +F +R +ER + F AL G++YL G E
Sbjct: 83 LTVCEPSLATVARRLELGRYLFMGRGEERSGGRERPSLLADAFEALLGSVYLDAGLEEAR 142
Query: 284 RVLFE 288
RV+ +
Sbjct: 143 RVVLQ 147
>gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
Length = 244
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 163 DTLLYLAFQH-PFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
D L LA H F N+ H+ + RL FLG VL L+ ++YP + + +
Sbjct: 35 DKYLRLALTHRSFA--NEHGHL-PNNERLEFLGDAVLGLSIAARLYEKYPTRPESDISKM 91
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ R L + L I ++++ + ALFGAIYL GF
Sbjct: 92 RASIVSRFGLADVAREIGLGAFILLGKGEANSNGRDKDSILADTTEALFGAIYLQHGFET 151
Query: 282 VYRVLFEVF 290
RV+ E+F
Sbjct: 152 ARRVILELF 160
>gi|315604391|ref|ZP_07879457.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
gi|315314097|gb|EFU62148.1| ribonuclease III [Actinomyces sp. oral taxon 180 str. F0310]
Length = 241
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
TLL LA H N+A + A + RL FLG VL + + ++YP + + +
Sbjct: 29 TLLQLALVHR-SYANEAGGI-ANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRA 86
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
+ ++ L + L + +F ++++ + F AL GA YL G E
Sbjct: 87 ATVSQQPLAAAARRIGLGDFVFLGKGESTHGGRDKDSILSDTFEALIGATYLTSGLEEAR 146
Query: 284 RVLFEVFG 291
RV+ G
Sbjct: 147 RVILARLG 154
>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
gi|189043307|sp|A4J683.1|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
Length = 246
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H TLL A H C H + RL FLG VLEL E + +P + + +
Sbjct: 20 HNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFPDRTEGELTK 79
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
+ +L K + L + +R +ER + F AL GAIYL G
Sbjct: 80 MRASSVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAFEALLGAIYLDQGL- 138
Query: 281 EVYR 284
E+ R
Sbjct: 139 EISR 142
>gi|389877454|ref|YP_006371019.1| RNAse III [Tistrella mobilis KA081020-065]
gi|388528238|gb|AFK53435.1| RNAse III [Tistrella mobilis KA081020-065]
Length = 242
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 164 TLLYLAFQHPFCE---RNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
+LL A HP + R++ VR + RL FLG VL LA + R+P ES +
Sbjct: 25 SLLEAALTHPSVDGGGRDRNGRVRLNYERLEFLGDRVLGLAVADQLYHRFPGESEGALAR 84
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE------REPP-VKSVFWALFGAI 273
R L+ R +L + + SL + RL R E R P + A+ A+
Sbjct: 85 RFAALVRRESLARVAEMLSLGRYL-------RLSRGEDDSGGRRNPANLADACEAVIAAL 137
Query: 274 YLCFGFPEVYR 284
YL GF R
Sbjct: 138 YLDGGFDTARR 148
>gi|217967335|ref|YP_002352841.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
gi|217336434|gb|ACK42227.1| Ribonuclease III [Dictyoglomus turgidum DSM 6724]
Length = 238
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A HP +++ + + + RL FLG VL + E QRY S + ++
Sbjct: 31 LLIEALTHPSF-KHENPNFKQDNQRLEFLGDAVLNMIITEILFQRYREASEGFLTQKRIY 89
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
L+ L K K+ L LI ++ +++ + +F A GA+YL G+
Sbjct: 90 LVKEETLYKKAKSLDLGELILLGVGEEKQGGRDKISILSDLFEAFIGALYLDKGYEYTKN 149
Query: 285 VLFEVFGMDPEDKECQ 300
+ E+F + E E +
Sbjct: 150 FVEEIFKEEIESIEME 165
>gi|354594333|ref|ZP_09012372.1| ribonuclease 3 [Commensalibacter intestini A911]
gi|353672009|gb|EHD13709.1| ribonuclease 3 [Commensalibacter intestini A911]
Length = 245
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 177 RNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIK 236
R K + V + + RL F+G VL L E+ L+RYP E + R L+ + L + +
Sbjct: 47 RKKVKRV-SSNERLEFIGDRVLGLVMAEWLLKRYPNEQEGDLGPRHAHLVSKTVLAQIAE 105
Query: 237 AASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPED 296
++ I ++ + + A+ GA+YL G V +++ +V+ E
Sbjct: 106 ILNISEAIHVASHEEKAGVHHTDSVLADAVEAILGAMYLDGGLNPVQKLVHKVWAKIIES 165
Query: 297 KECQPK 302
+ PK
Sbjct: 166 QPLPPK 171
>gi|374997118|ref|YP_004972617.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357215484|gb|AET70102.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 261
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ L A HP + + + RL FLG +L+ E+ YP + +
Sbjct: 46 NRLFTTALTHPSYVFENPQFGKENNQRLEFLGDAILDFVIAEYLYLNYPDRPEGELTKMR 105
Query: 223 FGLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKERE-PPVKSVFW-ALFGAIYLCFGF 279
++ L + L Q L+ E L+ RE P + + W A+ GAIYL +GF
Sbjct: 106 AAVVNETTLARKAHEIELGQELLLGKGE---LVSGGRERPSILADAWEAVIGAIYLQYGF 162
Query: 280 PEVYRVLFEVF 290
E RV+ E+
Sbjct: 163 QEARRVILELL 173
>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
Length = 222
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 138 EAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFV 197
E ++ALGY E D N LL LA H ++ + + RL FLG
Sbjct: 3 EIEKALGYKFE------DKN-------LLKLALTH----KSATHSNKNCYERLEFLGDAA 45
Query: 198 LELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-K 256
LELA ++ +P S + ++ + L K + +L+N I F + +++ +
Sbjct: 46 LELAVSKYLYVYFPELSEGELTNIRAAVVCSQTLSKVAEKLNLKNHII-FGKREKMEKFH 104
Query: 257 EREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
E + + V ALFGAI++ GF V +++
Sbjct: 105 ENKSILADVLEALFGAIFIESGFDTVEKII 134
>gi|410658788|ref|YP_006911159.1| Ribonuclease III [Dehalobacter sp. DCA]
gi|410661777|ref|YP_006914148.1| Ribonuclease III [Dehalobacter sp. CF]
gi|409021143|gb|AFV03174.1| Ribonuclease III [Dehalobacter sp. DCA]
gi|409024133|gb|AFV06163.1| Ribonuclease III [Dehalobacter sp. CF]
Length = 248
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Query: 152 QLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYP 211
QLG +N L++ A HP + RL FLG VL+ E+ Q YP
Sbjct: 31 QLGLENLQSE---LIFTALTHPSFTFENPNSGLENNQRLEFLGDAVLDFIIGEYLYQNYP 87
Query: 212 RESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFG 271
+ + + ++ L + ++ +L +F ++R + A+ G
Sbjct: 88 DKPEGELTKMRAAVVNETTLARKARSINLGQALFLGKGEQSSGGRDRPSIIADALEAVIG 147
Query: 272 AIYLCFGFPEVYRVLFEVF 290
AIYL +GF +V + + ++
Sbjct: 148 AIYLQYGFEKVRKFILDML 166
>gi|399526667|ref|ZP_10766423.1| ribonuclease III [Actinomyces sp. ICM39]
gi|398362776|gb|EJN46449.1| ribonuclease III [Actinomyces sp. ICM39]
Length = 240
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL LA H N+A + A + RL FLG VL + E ++YP + + +
Sbjct: 30 LLQLALVHR-SYANEAGGI-ANNERLEFLGDSVLSIVIAEKLYEQYPDVAESDLSRMRAA 87
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
+ ++ L + L + +F ++++ + F AL GA YL G E R
Sbjct: 88 TVSQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARR 147
Query: 285 VLFE 288
V+ E
Sbjct: 148 VILE 151
>gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2]
gi|238688867|sp|B1LCY9.1|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2]
Length = 240
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V L+ R+ NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RVKSAAASEEVLALVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEVYRVLFE 288
AIYL G+ ++ + LFE
Sbjct: 134 AAIYLDQGYEKI-KELFE 150
>gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10]
gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10]
Length = 240
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V ++ R+ NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RAKSAAASEEVLAMVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEVYRVLFE 288
AIYL G+ ++ + LFE
Sbjct: 134 AAIYLDQGYEKI-KELFE 150
>gi|15674631|ref|NP_268805.1| ribonuclease III [Streptococcus pyogenes SF370]
gi|19745653|ref|NP_606789.1| ribonuclease III [Streptococcus pyogenes MGAS8232]
gi|21909911|ref|NP_664179.1| ribonuclease III [Streptococcus pyogenes MGAS315]
gi|28896390|ref|NP_802740.1| ribonuclease III [Streptococcus pyogenes SSI-1]
gi|71910251|ref|YP_281801.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
gi|94988068|ref|YP_596169.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94991954|ref|YP_600053.1| ribonuclease III [Streptococcus pyogenes MGAS2096]
gi|94993854|ref|YP_601952.1| ribonuclease III [Streptococcus pyogenes MGAS10750]
gi|383479622|ref|YP_005388516.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS15252]
gi|383493542|ref|YP_005411218.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS1882]
gi|410680121|ref|YP_006932523.1| ribonuclease III [Streptococcus pyogenes A20]
gi|417857343|ref|ZP_12502402.1| ribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
gi|421893410|ref|ZP_16323923.1| Ribonuclease III [Streptococcus pyogenes NS88.2]
gi|54039245|sp|P66672.1|RNC_STRP8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54041616|sp|P66670.1|RNC_STRP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043363|sp|Q1JCZ9.1|RNC_STRPB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043364|sp|Q1JMX4.1|RNC_STRPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043366|sp|Q1J7V3.1|RNC_STRPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|342179219|sp|P0DF14.1|RNC_STRP3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|342179220|sp|P0DF15.1|RNC_STRPQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|13621744|gb|AAK33526.1| putative ribonuclease III [Streptococcus pyogenes M1 GAS]
gi|19747784|gb|AAL97288.1| putative ribonuclease III [Streptococcus pyogenes MGAS8232]
gi|21904099|gb|AAM78982.1| putative ribonuclease III [Streptococcus pyogenes MGAS315]
gi|28811641|dbj|BAC64573.1| putative ribonuclease III [Streptococcus pyogenes SSI-1]
gi|71853033|gb|AAZ51056.1| ribonuclease III [Streptococcus pyogenes MGAS5005]
gi|94541576|gb|ABF31625.1| ribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94545462|gb|ABF35509.1| Ribonuclease III [Streptococcus pyogenes MGAS2096]
gi|94547362|gb|ABF37408.1| Ribonuclease III [Streptococcus pyogenes MGAS10750]
gi|378927612|gb|AFC65818.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS15252]
gi|378929270|gb|AFC67687.1| ribonuclease III protein Rnc [Streptococcus pyogenes MGAS1882]
gi|379980842|emb|CCG27645.1| Ribonuclease III [Streptococcus pyogenes NS88.2]
gi|387934298|gb|EIK42411.1| ribonuclease III [Streptococcus pyogenes HKU QMH11M0907901]
gi|395453490|dbj|BAM29829.1| ribonuclease III [Streptococcus pyogenes M1 476]
gi|409692710|gb|AFV37570.1| ribonuclease III [Streptococcus pyogenes A20]
Length = 230
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>gi|332296458|ref|YP_004438381.1| ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
Length = 228
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLG VL+L YP S M + L+ ++L K K +LQN +
Sbjct: 45 RLEFLGDAVLKLVVSHKLFVLYPEMSEGDMSKLRAYLVSDKHLTKIAKKLNLQNYLL-IG 103
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPK 302
+R I ++ + + F A+ GA+Y+ + Y+++ ++ + E+ E K
Sbjct: 104 SSERTI---KDSILSASFEAILGAVYMDSSLKQCYKIIDKLMNIKIEEYEEDSK 154
>gi|406882844|gb|EKD30540.1| hypothetical protein ACD_78C00013G0002 [uncultured bacterium (gcode
4)]
Length = 249
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 168 LAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIG 227
LAF H HV + RL FLG VLEL E YP ++ + + L+
Sbjct: 36 LAFIHRSVLNENIIHVSESNERLEFLGDAVLELISTELLFHAYPDKAEWELTDIRSALVR 95
Query: 228 RRNLPKWIKAASLQNLIFPFDEMDRLIRKEREP-PVKSVFWALFGAIYLCFGFPE 281
+NL A +LQ+ + + + L P V + F A A+YL G+ E
Sbjct: 96 GKNLASIGLALNLQDYVL-VSKGELLAGGNTNPYIVANTFEAFLWALYLDLGYEE 149
>gi|386714302|ref|YP_006180625.1| ribonuclease III [Halobacillus halophilus DSM 2266]
gi|384073858|emb|CCG45351.1| ribonuclease III [Halobacillus halophilus DSM 2266]
Length = 230
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 161 HFD--TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF +LL AF H + R + RL FLG VLEL ++ + YP + +
Sbjct: 14 HFQDISLLEQAFTHSSYVNEHRKTERKDNERLEFLGDAVLELGVSQYLYREYPDMAEGEL 73
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L + K + LI + + R + VF A GA+YL G
Sbjct: 74 TKFRASIVCEASLVDFAKDLNFHELILLGKGEELTGGRNRPALLADVFEAFIGALYLDQG 133
Query: 279 FPEVYRVL 286
F EV L
Sbjct: 134 FEEVVTFL 141
>gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 35 EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 94
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V ++ R+ NL K+ +F ++ ++R+ + F AL
Sbjct: 95 RVKSAAASEEVLAMVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 145
Query: 271 GAIYLCFGFPEVYRVLFE 288
AIYL G+ ++ + LFE
Sbjct: 146 AAIYLDQGYEKI-KELFE 162
>gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 231
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A +H +A + RL FLG L L + R+P S + + G
Sbjct: 19 LLAKALRHSSYVNEQADPAMEDNERLEFLGDAALSLCIGHLLMARFPELSEGDLSQTRAG 78
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
L+ L ++ +L + ++ + ++ + + AL GAIYL GF V
Sbjct: 79 LVNAGWLADIGRSMNLGEYVLLGKGEEQTNGRNKDSILANAVEALLGAIYLDGGFDAVMA 138
Query: 285 VLFEVFGMDPE 295
V+ F D E
Sbjct: 139 VVRHKFENDIE 149
>gi|374582910|ref|ZP_09656004.1| ribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374418992|gb|EHQ91427.1| ribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 261
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ L A HP + + + RL FLG +L+ E+ YP + +
Sbjct: 48 NRLFTTALTHPSYVFENPQFGKENNQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMR 107
Query: 223 FGLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKERE-PPVKSVFW-ALFGAIYLCFGF 279
++ L + L Q L+ E L+ RE P + + W A+ GAIYL +GF
Sbjct: 108 AAVVNETTLARKAHEIELGQELLLGKGE---LVSGGRERPSILADAWEAVIGAIYLQYGF 164
Query: 280 PEVYRVLFEVF 290
E RV+ E+
Sbjct: 165 QEARRVILELL 175
>gi|50913818|ref|YP_059790.1| ribonuclease III [Streptococcus pyogenes MGAS10394]
gi|56808931|ref|ZP_00366639.1| COG0571: dsRNA-specific ribonuclease [Streptococcus pyogenes M49
591]
gi|139474237|ref|YP_001128953.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
gi|209559002|ref|YP_002285474.1| ribonuclease III [Streptococcus pyogenes NZ131]
gi|255591218|ref|XP_002535468.1| ribonuclease III, putative [Ricinus communis]
gi|306827819|ref|ZP_07461089.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
gi|386362306|ref|YP_006071637.1| ribonuclease III [Streptococcus pyogenes Alab49]
gi|73917584|sp|Q5XDA6.1|RNC_STRP6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043367|sp|A2RFW8.1|RNC_STRPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226741379|sp|B5XKB7.1|RNC_STRPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50902892|gb|AAT86607.1| Ribonuclease III [Streptococcus pyogenes MGAS10394]
gi|134272484|emb|CAM30747.1| ribonuclease III [Streptococcus pyogenes str. Manfredo]
gi|209540203|gb|ACI60779.1| Ribonuclease III [Streptococcus pyogenes NZ131]
gi|223523016|gb|EEF26915.1| ribonuclease III, putative [Ricinus communis]
gi|304429989|gb|EFM33028.1| ribonuclease III [Streptococcus pyogenes ATCC 10782]
gi|350276715|gb|AEQ24083.1| ribonuclease III [Streptococcus pyogenes Alab49]
Length = 230
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg]
gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg]
Length = 235
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H K A + RL FLG VLEL E+ +++P+ + +
Sbjct: 26 LLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFEKHPKMPEGDLTKLRAS 85
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
++ + L + L N +F D ++R+ + ++ GAIYL GF
Sbjct: 86 MVCEQTLALCARELHLGNYVFLGKGEDTTGGRDRDSILSDALESIIGAIYLDGGFA 141
>gi|71903092|ref|YP_279895.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
gi|90101651|sp|Q48UR6.1|RNC_STRPM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71802187|gb|AAX71540.1| ribonuclease III [Streptococcus pyogenes MGAS6180]
Length = 230
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
Length = 232
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H LL A H R + RL FLG VL+LA E +R+P+ +
Sbjct: 19 HDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKMREGELSR 78
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
R L+ +L + + L L+ + +++ + F AL GA+YL G
Sbjct: 79 RRAALVNEAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGAVYLDGGCR 138
Query: 281 EVYRVLFEVF 290
V + E+F
Sbjct: 139 AVLDLAAELF 148
>gi|189043365|sp|Q1JI19.1|RNC_STRPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|94543456|gb|ABF33504.1| Ribonuclease III [Streptococcus pyogenes MGAS10270]
Length = 230
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
TLL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ M +
Sbjct: 20 TLLETAFTHT-SYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G V
Sbjct: 79 SMIVREESLAGFSRFCSFDAYIKLGKGEEKSGGRRRDTILGDLFEAFLGALLLDKGIDAV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLKQVM 146
>gi|403253913|ref|ZP_10920213.1| ribonuclease III [Thermotoga sp. EMP]
gi|402810816|gb|EJX25305.1| ribonuclease III [Thermotoga sp. EMP]
Length = 240
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V ++ R+ NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RVKSAAASEEVLAMVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEVYRVLFE 288
AIYL G+ ++ + LFE
Sbjct: 134 AAIYLDQGYEKI-KELFE 150
>gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola potens JR]
gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR]
Length = 245
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 46/115 (40%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H R + RL FLG VLEL E+ R+P + + G
Sbjct: 26 LLVTALTHSSYAHENKREPIEHNQRLEFLGDAVLELVISEYLYDRFPTYPEGVLTKMRAG 85
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ +L +A +L I +R + R + A+FGA+YL G
Sbjct: 86 IVCESSLASVARAMNLGQYILMGKGEERSGGRNRPSILADAMEAIFGAVYLDQGL 140
>gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8]
gi|418044738|ref|ZP_12682834.1| Ribonuclease 3 [Thermotoga maritima MSB8]
gi|7531194|sp|Q9X0I6.1|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8]
gi|351677820|gb|EHA60967.1| Ribonuclease 3 [Thermotoga maritima MSB8]
Length = 240
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V ++ R+ NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RVKSAAASEEVLAMVSRKMNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEVYRVLFE 288
AIYL G+ ++ + LFE
Sbjct: 134 AAIYLDQGYEKI-KELFE 150
>gi|406659375|ref|ZP_11067513.1| ribonuclease III [Streptococcus iniae 9117]
gi|405577484|gb|EKB51632.1| ribonuclease III [Streptococcus iniae 9117]
Length = 230
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+LL AF H N+ R + H+ RL FLG VL+L E+ +YP+++ + +
Sbjct: 20 SLLETAFTHT-SYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKKAEGDLSKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + S I ++ + R+ + +F A GA+ L G EV
Sbjct: 79 SMIVREESLAGFSRFCSFDTYIKLGKGEEKSGGRNRDTILGDLFEAFLGALLLDKGVDEV 138
Query: 283 YRVLFEVF 290
R L +V
Sbjct: 139 RRFLNQVM 146
>gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
Length = 222
Score = 45.1 bits (105), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 178 NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKA 237
N+ ++ + RL FLG ++ L ++ Q+ +E+ M ++ + ++L + K+
Sbjct: 31 NEKEFLQENNERLEFLGDAIIGLLMADYLYQK-NKENEGVMTKKRAQAVCEKSLTIYAKS 89
Query: 238 ASLQNLIFPFDEMDRLIRKEREPPVKSV----FWALFGAIYLCFGFPEVYRV 285
+LQN +F K ++ KS+ F ALFGAIYL G+ +V
Sbjct: 90 INLQNYLFLGKG-----EKNKDFNTKSIIADAFEALFGAIYLDLGYNSAKKV 136
>gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella morbillorum M424]
gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella morbillorum M424]
Length = 237
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 168 LAFQHP--FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
+AF H E+ A+H+ + RL FLG V+EL EF +++P+ + + + +
Sbjct: 29 MAFSHSSYTNEKKIAKHLN--YERLEFLGDAVVELTTSEFLFKKFPKLAEGELTKLRASI 86
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
+ + L K+ +L I+ +++ + R + +F + GA+YL
Sbjct: 87 VCEKTLVKYALQLNLDKCIYLGRGEEKMGGRSRAALLADIFESFTGALYL 136
>gi|375012984|ref|YP_004989972.1| ribonuclease III [Owenweeksia hongkongensis DSM 17368]
gi|359348908|gb|AEV33327.1| ribonuclease III [Owenweeksia hongkongensis DSM 17368]
Length = 244
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 168 LAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIG 227
LAF+H R + + R + RL +LG +L +F RYP + ++
Sbjct: 39 LAFRHSSASR-ENQGARLNNQRLEYLGDAILGAIVADFLYDRYPESGEGYLTSMRSKIVS 97
Query: 228 RRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW----ALFGAIYLCFGFPEV 282
RR+L + L L+ + R KS++ AL GA+YL GF +
Sbjct: 98 RRHLNQLGMKMGLNKLVVK--------KTSRTVNAKSIYGDALEALIGAVYLDRGFEDT 148
>gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
Length = 236
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
Query: 137 LEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQF 196
LE ++ +GY E D LL A H + + RL FLG
Sbjct: 8 LELEKKIGYEFENFD-------------LLVNALTHSSYANEHHIAYKENNERLEFLGDA 54
Query: 197 VLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRK 256
VLEL EF +Y + ++ ++ L K SL + + + +
Sbjct: 55 VLELTSSEFLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGR 114
Query: 257 EREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE--------CQPKLRRQLE 308
R + AL GAIYL GF + + D E+K+ Q ++ Q E
Sbjct: 115 NRNSIISDAMEALIGAIYLDGGFANAKEFVHKYILNDIENKQLFYDSKTTLQEIVQAQYE 174
Query: 309 -DVDYVSVEFEG 319
DV YV V+ EG
Sbjct: 175 DDVKYVLVKEEG 186
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 156 DNPAKHFDTLLYLAFQHPFCERNKARHVRA------GHSRLCFLGQFVLELAFCEFFLQR 209
D H +L F HP R H A + RL FLG VL LA E L R
Sbjct: 5 DRDLSHLAEVLGHTFNHPDILRRAVTHASAEPRAWNAYERLEFLGDRVLALAVAEQLLDR 64
Query: 210 YPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWAL 269
+P E + +R L+ R L L + D + + + A+
Sbjct: 65 FPHEREGAIAKRHVSLVRRETLADVAHTIDLGRYLIVSRGEDDAGARASDTILSDSMEAV 124
Query: 270 FGAIYLCFGF 279
A+YL G
Sbjct: 125 IAALYLDGGL 134
>gi|406706293|ref|YP_006756646.1| ribonuclease III [alpha proteobacterium HIMB5]
gi|406652069|gb|AFS47469.1| ribonuclease III [alpha proteobacterium HIMB5]
Length = 221
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 178 NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKA 237
+K+ + + + +L FLG VL L + L YP+E + ++ L+ + + K
Sbjct: 28 HKSFNSKENNEKLEFLGDRVLGLVISKKLLDLYPKEKEGVLDKKFASLVNKNTCLQIAKK 87
Query: 238 ASLQNLIFPFDEMDRLIRKEREPPVKSVFW----ALFGAIYLCFGFPEVYRVLFEVF 290
+L I + K + PP V AL GAIYL GF V + + +++
Sbjct: 88 INLDKFILTLNS-----EKAKTPPQDKVISDSCEALIGAIYLDRGFNVVEKFILDLW 139
>gi|167745647|ref|ZP_02417774.1| hypothetical protein ANACAC_00339 [Anaerostipes caccae DSM 14662]
gi|317472750|ref|ZP_07932063.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167654959|gb|EDR99088.1| ribonuclease III [Anaerostipes caccae DSM 14662]
gi|316899776|gb|EFV21777.1| ribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 231
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 47/122 (38%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H LL A H + + RL FLG VLEL ++ Y E + +
Sbjct: 18 HDKKLLTTALTHSSYANERKLSRGKDNERLEFLGDAVLELIMSDYLFHTYKDEPEGKLTK 77
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
L+ L K SL + + D +ER+ + F A+ GA+YL GF
Sbjct: 78 MRASLVCEPTLAFCAKDLSLGDYLLLSKGEDLTGGRERDSILSDAFEAVIGAVYLDQGFE 137
Query: 281 EV 282
E
Sbjct: 138 EA 139
>gi|390565713|ref|ZP_10246331.1| Ribonuclease 3 [Nitrolancetus hollandicus Lb]
gi|390171040|emb|CCF85668.1| Ribonuclease 3 [Nitrolancetus hollandicus Lb]
Length = 258
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 62/174 (35%), Gaps = 30/174 (17%)
Query: 133 DEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR---HVRAGHSR 189
DE L A ALG NP LL LA H A V A + R
Sbjct: 16 DERLARAADALGIEFR--------NP-----ELLRLALTHRSYINEVAEPLEVVDASNER 62
Query: 190 LCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDE 249
L FLG VL + EF RYPR + L+ L W + F DE
Sbjct: 63 LEFLGDSVLGMIAAEFLFDRYPRVPEGTLTAYRTALVRTETLAYWARQ-------FGLDE 115
Query: 250 MDRLIRKE-------REPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPED 296
+ L R E R+ + F A+ AIY+ G R L + D E+
Sbjct: 116 LLYLGRGETTADGEVRDRILAGAFEAVIAAIYMDRGIRGARRFLRALLNKDAEE 169
>gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583]
gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583]
Length = 263
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
Query: 137 LEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQF 196
LE ++ +GY E D LL A H + + RL FLG
Sbjct: 35 LELEKKIGYEFENFD-------------LLVNALTHSSYANEHHIAYKENNERLEFLGDA 81
Query: 197 VLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRK 256
VLEL EF +Y + ++ ++ L K SL + + + +
Sbjct: 82 VLELTSSEFLFYQYADLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGR 141
Query: 257 EREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE--------CQPKLRRQLE 308
R + AL GAIYL GF + + D E+K+ Q ++ Q E
Sbjct: 142 NRNSIISDAMEALIGAIYLDGGFANAKEFVHKYILNDIENKQLFYDSKTTLQEIVQAQYE 201
Query: 309 -DVDYVSVEFEG 319
DV YV V+ EG
Sbjct: 202 DDVKYVLVKEEG 213
>gi|399025930|ref|ZP_10727905.1| ribonuclease III [Chryseobacterium sp. CF314]
gi|398077111|gb|EJL68133.1| ribonuclease III [Chryseobacterium sp. CF314]
Length = 253
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 170 FQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRR 229
++ F +N +++ + + RL FLG VL Q YP+ + + + ++ R+
Sbjct: 44 YREAFSLKNSSKNQDSNYERLEFLGDSVLGTIISCHLFQTYPQANEGYLTQMKSKIVNRK 103
Query: 230 NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
NL K + L +L+ + + E ++F AL GA+YL F + R++ E
Sbjct: 104 NLNKLGEDLRLTDLLQKQNSVAL-----GENISGNLFEALIGAVYLDFHYDMCRRIILE 157
>gi|317154737|ref|YP_004122785.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
gi|316944988|gb|ADU64039.1| ribonuclease III [Desulfovibrio aespoeensis Aspo-2]
Length = 230
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLG VLEL E +R+P + L+ ++L ++ L I
Sbjct: 41 RLEFLGDAVLELCISEEGYRRFPHAPEGQLTRIRSQLVKEKSLAAIARSLDLHRHILLGK 100
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG-------MDPEDKECQP 301
+ ++R+ + F AL GA++L GF + + +FG M PE K+ +
Sbjct: 101 GEELQGGRDRDALLADAFEALMGAVFLDGGFAAARKSILHIFGDKWPEAEMLPETKDYKS 160
Query: 302 KLR 304
+L+
Sbjct: 161 RLQ 163
>gi|172057915|ref|YP_001814375.1| ribonuclease III [Exiguobacterium sibiricum 255-15]
gi|171990436|gb|ACB61358.1| Ribonuclease III [Exiguobacterium sibiricum 255-15]
Length = 256
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 161 HFDT--LLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAP 217
HF LL AF H F N+ R + RL FLG VLEL + Q YP S
Sbjct: 41 HFANVELLKQAFTHSSFV--NEQRESDGDNERLEFLGDAVLELTVSRYLFQHYPERSEGE 98
Query: 218 MRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF 277
+ + ++ +L ++ +I + + R + VF A GA+YL
Sbjct: 99 LTKLRAAIVCEPSLVQFANHYEFSEMILLGKGEELTGGRNRPALLADVFEAFIGALYLDQ 158
Query: 278 GFPEVYRVLFE-VF-----GMDPEDKECQPKLRRQLEDVDYVSVEFE 318
G R L E VF G E + + +L+ ++ V +E+E
Sbjct: 159 GIEAAERFLAEAVFPKVASGFFEEQTDFKSQLQEAIQRVGLGQIEYE 205
>gi|402574105|ref|YP_006623448.1| ribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255302|gb|AFQ45577.1| ribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 261
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASL-QN 242
R + RL FLG +L+ E+ YP + + ++ L + L Q
Sbjct: 69 RENNQRLEFLGDAILDFIIAEYLYLSYPDRPEGELTKMRAAVVNETTLARKAHEIELGQE 128
Query: 243 LIFPFDEMDRLIRKERE-PPVKSVFW-ALFGAIYLCFGFPEVYRVLFEVF 290
L+ E L+ RE P + + W A+ GAIYL +GF E RV+ E+
Sbjct: 129 LLLGKGE---LVSGGRERPSILADAWEAVIGAIYLQYGFQEARRVILELL 175
>gi|349686514|ref|ZP_08897656.1| ribonuclease III [Gluconacetobacter oboediens 174Bp2]
Length = 256
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 165 LLYLAFQHPFC--ERNKARHVR-------AG-HSRLCFLGQFVLELAFCEFFLQRYPRES 214
LL A H ERN R R AG + RL F+G VL L E+ L+R+P E
Sbjct: 27 LLLRALTHRSAAHERNGGRRTRQSTAKRGAGSNERLEFIGDRVLGLLMAEWLLERFPDEQ 86
Query: 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274
+ R L+ R L + A LQ+ + + R ++ + A+ GA+Y
Sbjct: 87 EGALGPRHAHLVSRTVLAQVAHAMGLQSALDVAEHEARAGVRQMANVLADAVEAILGAMY 146
Query: 275 LCFGF 279
L G
Sbjct: 147 LDGGL 151
>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
Length = 222
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 138 EAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFV 197
E ++ALGY E D N LL LA H ++ + + RL FLG
Sbjct: 3 EIEKALGYKFE------DKN-------LLRLALTH----KSATHSNKNCYERLEFLGDAA 45
Query: 198 LELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-K 256
LELA ++ +P S + ++ + L K + +L+N I F + +++ +
Sbjct: 46 LELAVSKYLYVYFPELSEGELTNIRAAVVCSQTLSKVAEKLNLKNHII-FGKREKMEKFY 104
Query: 257 EREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
E + + V ALFGAI++ GF V +++
Sbjct: 105 ENKSILADVLEALFGAIFIESGFDTVEKII 134
>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
Length = 224
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHS----RLCFLGQFVLELAFCEFFLQRYPRESPA 216
HF L F++ + H A S RL FLG VL+L EF +++P
Sbjct: 5 HFQQTLGYHFKNQNLLKEALTHKSAKKSTHNERLEFLGDAVLDLIIGEFLYKKFPSSPEG 64
Query: 217 PMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLC 276
+ + ++ + K + + +F ++ ++++ + + F A+ GAIYL
Sbjct: 65 ELSKMRASMVNEKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAIIGAIYLE 124
Query: 277 FGFPEVYRVLFEVF 290
G +V +++ ++
Sbjct: 125 SGLEKVQKIVLKIL 138
>gi|349700038|ref|ZP_08901667.1| ribonuclease III [Gluconacetobacter europaeus LMG 18494]
Length = 258
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 161 HFD--TLLYLAFQHPFC--ERNKARHVR-------AG-HSRLCFLGQFVLELAFCEFFLQ 208
HF LL A H ERN R VR AG + RL F+G VL L E+ L+
Sbjct: 21 HFTRPDLLLRALTHRSAAHERNGGRRVRQSVARRGAGSNERLEFIGDRVLGLLMAEWLLE 80
Query: 209 RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWA 268
R+P E + R L+ R L + + LQ+ + + R ++ + A
Sbjct: 81 RFPDEQEGALGPRHAHLVSRTVLAQVAQVMGLQSALDVAEHEARAGVRQMANVLADAVEA 140
Query: 269 LFGAIYLCFGF 279
+ GA+YL G
Sbjct: 141 ILGAMYLDGGL 151
>gi|302389624|ref|YP_003825445.1| RNAse III [Thermosediminibacter oceani DSM 16646]
gi|302200252|gb|ADL07822.1| RNAse III [Thermosediminibacter oceani DSM 16646]
Length = 241
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 162 FDTLLYL--AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
FD L L AF HP K + + RL FLG VLEL E+ +YP + +
Sbjct: 22 FDDLNILNQAFIHPSYAYEKGLSHQEHNQRLEFLGDAVLELVISEWIYDKYPNYTEGELT 81
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
+ L+ +L + +L + + + +E+ + F AL GA+YL GF
Sbjct: 82 KLRALLVCEESLAYLSRELTLGDFLIMGKGEEITGGREKASILADTFEALIGAMYLDKGF 141
Query: 280 PEVYRVLFEVF 290
+ + E F
Sbjct: 142 GAITGFVREKF 152
>gi|381205333|ref|ZP_09912404.1| ribonuclease III [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 243
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
Query: 165 LLYLAFQHPFC-ERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL A H C AR + + R FLG VL+L E + R+P S + +
Sbjct: 23 LLKQALTHKSCVHDGNARSPQQNNERFEFLGDAVLDLLISELLMDRFPELSEGGLSKLRA 82
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF----GF 279
L+ L + + L + + +E+ + ALF AIYL G
Sbjct: 83 SLVNESGLRRIANSLELGQFLLMGKGEEMTGGREKASLLADAVEALFAAIYLDSREKQGL 142
Query: 280 PEVYRVLFEVF 290
EV R++ ++F
Sbjct: 143 QEVTRIVHKLF 153
>gi|433546097|ref|ZP_20502435.1| ribonuclease III [Brevibacillus agri BAB-2500]
gi|432182713|gb|ELK40276.1| ribonuclease III [Brevibacillus agri BAB-2500]
Length = 228
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 161 HFDTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
H +++L AF H + + + + + + RL FLG VLEL +F + +P+ S M
Sbjct: 15 HDESVLRQAFTHSSYVNEQRGKRI-SDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMT 73
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
+ ++ +L K+ + + +L+ + ++R + VF A GA+YL G
Sbjct: 74 KLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGL 133
Query: 280 PEVY 283
V+
Sbjct: 134 DAVF 137
>gi|293192364|ref|ZP_06609475.1| ribonuclease III [Actinomyces odontolyticus F0309]
gi|292820279|gb|EFF79273.1| ribonuclease III [Actinomyces odontolyticus F0309]
Length = 240
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL LA H N+A + A + RL FLG VL + + ++YP + + +
Sbjct: 30 LLQLALVHR-SYANEAGGI-ANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAA 87
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
+ ++ L + L + +F ++++ + F AL GA YL G E R
Sbjct: 88 TVSQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARR 147
Query: 285 VLFE 288
V+ E
Sbjct: 148 VILE 151
>gi|323702685|ref|ZP_08114346.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|323532348|gb|EGB22226.1| ribonuclease III [Desulfotomaculum nigrificans DSM 574]
Length = 204
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VLEL E+ QR+P + + + + +L K + L +
Sbjct: 4 NQRLEFLGDAVLELLISEYLYQRFPDRTEGELTKMRAASVCEPSLAKVARGLDLGRCLRM 63
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
+R +ER + F AL GAIYL G + + E
Sbjct: 64 GRGEERSGGRERPSILADAFEALLGAIYLDHGLEAARKFVLE 105
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + RL FLG VLEL ++ +++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLFKKFPHMSEGELTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDQGMDAV 151
Query: 283 YRVL 286
+ L
Sbjct: 152 MQFL 155
>gi|414154272|ref|ZP_11410591.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454063|emb|CCO08495.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 249
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 13/156 (8%)
Query: 132 IDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLC 191
+DE KQ LG+ NP +LL A H C H + RL
Sbjct: 7 LDEQTHRLKQRLGFQWH--------NP-----SLLIQALTHSSCVHESRGHGIYHNQRLE 53
Query: 192 FLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMD 251
FLG VLEL E + +P + + + + +L K + L + +
Sbjct: 54 FLGDAVLELVVSEELYRMFPDRTEGELTKMRAASVCEPSLAKAARELDLGRCLRMGRGEE 113
Query: 252 RLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLF 287
R +ER + F AL GAIYL G E R +
Sbjct: 114 RSGGRERPSILADAFEALLGAIYLDQGLEEARRFVL 149
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Query: 156 DNPAKHFDT--LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213
DN HFD LLY AF H R + RL FLG VLEL +F ++P+
Sbjct: 26 DNLGLHFDNKNLLYNAFTHSSYVNEHRRKQYEDNERLEFLGDAVLELTVSKFLFLKFPKM 85
Query: 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAI 273
+ + + ++ +L + + + + +ER + F A GA+
Sbjct: 86 TEGELTKLRAAIVCEPSLVIFANELNFGEFVLLGKGEEITGGRERPALLADCFEAFVGAL 145
Query: 274 YLCFGFPEVYRVL 286
YL G V L
Sbjct: 146 YLDQGLETVVGFL 158
>gi|404482777|ref|ZP_11018002.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
gi|404343867|gb|EJZ70226.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
Length = 232
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 4/157 (2%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + RL FLG VLEL EFF YP + + + G
Sbjct: 21 LLSQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSSEFFYGVYPDKPEGELTKIRAG 80
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
+ L K L + + + R + F AL G+IYL GF
Sbjct: 81 FVCEAALADCAKNIKLSKFLKLGKGEEHTGGRMRPSIISDAFEALIGSIYLDGGFANAKE 140
Query: 285 VLFEVFGMDPEDK----ECQPKLRRQLEDVDYVSVEF 317
V+ + + E+K + + L+ ++ D SVE+
Sbjct: 141 VILKFILNEYENKVFFYDSKTILQEVIQSQDSKSVEY 177
>gi|402313792|ref|ZP_10832702.1| ribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400365574|gb|EJP18625.1| ribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 232
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 4/157 (2%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + RL FLG VLEL EFF YP + + + G
Sbjct: 21 LLNQALTHSSYANEHQLGKNGSNERLEFLGDAVLELVSSEFFYGVYPDKPEGELTKIRAG 80
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
+ L K L + + + R + F AL G+IYL GF
Sbjct: 81 FVCEAALADCAKNIKLSKFLKLGKGEEHTGGRMRPSIISDAFEALIGSIYLDGGFANAKE 140
Query: 285 VLFEVFGMDPEDK----ECQPKLRRQLEDVDYVSVEF 317
V+ + + E+K + + L+ ++ D SVE+
Sbjct: 141 VILKFILNEYENKVFFYDSKTILQEVIQSQDSKSVEY 177
>gi|407795767|ref|ZP_11142725.1| ribonuclease III [Salimicrobium sp. MJ3]
gi|407020108|gb|EKE32822.1| ribonuclease III [Salimicrobium sp. MJ3]
Length = 227
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 15/168 (8%)
Query: 165 LLYLAFQHPFCERNKARHV-RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H N+ RH R + RL FLG VLEL ++ ++YP + +
Sbjct: 20 LLEQAFTHS-SYVNEHRHTERKDNERLEFLGDAVLELGVSQYLYRKYPNMEEGDLTKLRA 78
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF---- 279
++ +L + + Q + + + R + VF A GA+YL GF
Sbjct: 79 SIVCEASLVDFANDLNFQEYVLLGKGEEMTGGRHRPALLADVFEAFIGALYLDQGFDRVL 138
Query: 280 --------PEVYRVLFEVFGMDPEDKECQPKLRRQLEDVDYVSVEFEG 319
P++ R F MD + + + R + D+DY V+ G
Sbjct: 139 SYLGYYIYPKIKRGAFS-HAMDYKSQLQEHIQREKQADIDYEIVDERG 185
>gi|193215269|ref|YP_001996468.1| ribonuclease III [Chloroherpeton thalassium ATCC 35110]
gi|193088746|gb|ACF14021.1| Ribonuclease III [Chloroherpeton thalassium ATCC 35110]
Length = 269
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLG VL+L E R+P + + L+ R L + + L +L+ +
Sbjct: 82 RLEFLGDAVLDLVVAECLYTRFPDYDEGKLTKLRSQLVNARTLASFARKIHLGSLLIVSE 141
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
+ + ++ E + F AL GAIYL + + R L
Sbjct: 142 AAEAIGVRDSETTLADAFEALVGAIYLDSDYLQTKRFL 179
>gi|399047096|ref|ZP_10739228.1| ribonuclease III [Brevibacillus sp. CF112]
gi|398054929|gb|EJL47027.1| ribonuclease III [Brevibacillus sp. CF112]
Length = 233
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 161 HFDTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
H +++L AF H + + + + + + RL FLG VLEL +F + +P+ S M
Sbjct: 20 HDESVLRQAFTHSSYVNEQRGKRI-SDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMT 78
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
+ ++ +L K+ + + +L+ + ++R + VF A GA+YL G
Sbjct: 79 KLRAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGL 138
Query: 280 PEVY 283
V+
Sbjct: 139 DAVF 142
>gi|406918003|gb|EKD56659.1| hypothetical protein ACD_58C00123G0005 [uncultured bacterium]
Length = 232
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VLEL E+ + YP R + G R L + +++ L++
Sbjct: 46 NERLEFLGDAVLELVVTEYLYKNYPNPEGELTNWRSALVKGER-LSQVATKLNIEKLLYL 104
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
+ K R+ + + F AL GAIYL G+ +V + +++
Sbjct: 105 SRGEQKSSGKSRQLILANAFEALIGAIYLDKGYQKVQKYIYD 146
>gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032]
gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032]
Length = 247
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 28 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 87
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 88 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 147
Query: 279 FPEVYRVL 286
V R L
Sbjct: 148 LEPVERFL 155
>gi|389573284|ref|ZP_10163359.1| ribonuclease III [Bacillus sp. M 2-6]
gi|388426981|gb|EIL84791.1| ribonuclease III [Bacillus sp. M 2-6]
Length = 247
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 28 HFKNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 87
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 88 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 147
Query: 279 FPEVYRVL 286
V R L
Sbjct: 148 LEPVERFL 155
>gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061]
gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061]
Length = 247
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 28 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 87
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 88 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 147
Query: 279 FPEVYRVL 286
V R L
Sbjct: 148 LEPVERFL 155
>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
Length = 248
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL+ AF H R + RL FLG VLEL +F ++YP S + +
Sbjct: 34 EALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFKKYPTMSEGELTKLR 93
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + L+ + + R + VF A GA+YL G V
Sbjct: 94 AAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADVFEAFIGALYLDQGLDTV 153
Query: 283 YRVLFEV 289
+L +V
Sbjct: 154 VTILKKV 160
>gi|384045183|ref|YP_005493200.1| Ribonuclease III [Bacillus megaterium WSH-002]
gi|345442874|gb|AEN87891.1| Ribonuclease III [Bacillus megaterium WSH-002]
Length = 248
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL+ AF H R + RL FLG VLEL +F ++YP S + +
Sbjct: 34 EALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFKKYPTMSEGELTKLR 93
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + L+ + + R + VF A GA+YL G V
Sbjct: 94 AAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADVFEAFIGALYLDQGLDTV 153
Query: 283 YRVLFEV 289
+L +V
Sbjct: 154 VTILKKV 160
>gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
Length = 224
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 51/106 (48%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VL+L EF +++P + + ++ + K + ++ ++
Sbjct: 35 NERLEFLGDAVLDLIIGEFLYKKFPHSPEGELSKMRASMVNEKAFAKIARYLNIGEYLYI 94
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292
++ +E++ + + F A+ GAIYL G +V ++ ++ +
Sbjct: 95 SHSEEQNNGREKDSILSNAFEAIVGAIYLESGLEKVQTIVLKILDI 140
>gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571]
gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
gi|385813586|ref|YP_005849979.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
helveticus H10]
gi|403514797|ref|YP_006655617.1| ribonuclease III [Lactobacillus helveticus R0052]
gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
helveticus DPC 4571]
gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
helveticus H10]
gi|403080235|gb|AFR21813.1| ribonuclease III [Lactobacillus helveticus R0052]
Length = 228
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + +L FLG VLELA ++ + YP+ + +
Sbjct: 21 EKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSDYLYRHYPKLNEGELTRLR 80
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ ++ QN I + ++ ++R+ ++ VF A GA++L G P V
Sbjct: 81 SNIVRTEGFSEFAIECGFQNEIHLGNGEEKAGARKRKTLLEDVFEAFNGALFLDQGMPAV 140
Query: 283 YRVL 286
L
Sbjct: 141 QHFL 144
>gi|154509007|ref|ZP_02044649.1| hypothetical protein ACTODO_01524 [Actinomyces odontolyticus ATCC
17982]
gi|153798641|gb|EDN81061.1| ribonuclease III [Actinomyces odontolyticus ATCC 17982]
Length = 240
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL LA H N+A + A + RL FLG VL + + ++YP + + +
Sbjct: 30 LLQLALVHR-SYANEAGGI-ANNERLEFLGDSVLSIVIAQKLYEQYPDVAESDLSRMRAA 87
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
+ ++ L + L + +F ++++ + F AL GA YL G E R
Sbjct: 88 TVSQQPLAAAARRIGLGDFVFLGKGESMHGGRDKDSILSDTFEALIGATYLTSGLEEARR 147
Query: 285 VLFE 288
V+ E
Sbjct: 148 VILE 151
>gi|111073612|emb|CAL29457.1| Ribonuclease III [Wolbachia endosymbiont of Onchocerca volvulus]
Length = 243
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
++L A HP + +++ + RL FLG +L + + +P+E + +R
Sbjct: 28 SILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVSTILFKLFPKEKEGRLAKRKT 87
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCFGFPEV 282
L+ + K L + I D +R K +++ AL GAIY+ GF V
Sbjct: 88 DLVCGSTIANVAKVIKLGDFII-MDNSERCNGGKYNLKNLENALEALIGAIYIDGGFRNV 146
Query: 283 YR 284
R
Sbjct: 147 ER 148
>gi|406933452|gb|EKD68103.1| hypothetical protein ACD_48C00077G0008 [uncultured bacterium]
Length = 228
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 171 QHPFCER---NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIG 227
QH F R N+A+H++ + RL FLG +L +F YP + L+
Sbjct: 21 QHAFYHRSYLNEAKHIKESNERLEFLGDAILSFLTSQFLYTTYPTYPEGVLTNIRSSLVK 80
Query: 228 RRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
++L + KA +L+F + + + F A GAI+L
Sbjct: 81 TKSLGESAKALGFGDLLFLSHGEEESGGRNNMSLLADSFEAFLGAIFL 128
>gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
gi|224956693|gb|EEG37902.1| ribonuclease III [Eubacterium hallii DSM 3353]
Length = 232
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 51/132 (38%)
Query: 166 LYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
L LA H + +A + RL FLG VLE+ ++ + YP + + + L
Sbjct: 24 LALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDYVFREYPGYNEGRLTKLRSSL 83
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRV 285
+ L + L + D +ER+ + F AL GAIYL G
Sbjct: 84 VCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDAFEALIGAIYLDGGMDRARTF 143
Query: 286 LFEVFGMDPEDK 297
+ D EDK
Sbjct: 144 IHTHLLKDVEDK 155
>gi|344995859|ref|YP_004798202.1| ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
gi|343964078|gb|AEM73225.1| Ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
Length = 222
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 138 EAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFV 197
E ++ALGY+ + D N LL LA H ++ + + RL FLG
Sbjct: 3 EIERALGYTFK------DKN-------LLRLALTH----KSATHSNKNCYERLEFLGDAA 45
Query: 198 LELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-K 256
LELA ++ +P S + ++ + L K + +L+N I F + +++ +
Sbjct: 46 LELAVSKYLFVHFPELSEGELTNIRAAVVCSQTLSKVAEKLNLKNHII-FGKREKMEKFH 104
Query: 257 EREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
E + + V A+FGAI++ GF V +++
Sbjct: 105 ENKSILADVLEAIFGAIFIESGFDIVEKII 134
>gi|291459099|ref|ZP_06598489.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
gi|291418353|gb|EFE92072.1| ribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
Length = 234
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A HP + A + RL FLG VLELA +F R P M +
Sbjct: 20 LLLHALTHPSYSNEQGDPKEASNQRLEFLGDAVLELAASDFLYHRVPVIQEGVMTKLRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
L+ L + + SL + + R + R+ + F A+ GAIYL GF
Sbjct: 80 LVCEPTLAEAARKLSLGDYLVLGRGEGREGIQLRDSVLSDAFEAVIGAIYLDGGFS 135
>gi|300858757|ref|YP_003783740.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
gi|375288938|ref|YP_005123479.1| ribonuclease III [Corynebacterium pseudotuberculosis 3/99-5]
gi|379715635|ref|YP_005303972.1| ribonuclease III [Corynebacterium pseudotuberculosis 316]
gi|383314516|ref|YP_005375371.1| Ribonuclease III [Corynebacterium pseudotuberculosis P54B96]
gi|384504932|ref|YP_005681602.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002]
gi|384507029|ref|YP_005683698.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231]
gi|384509117|ref|YP_005685785.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19]
gi|384511207|ref|YP_005690785.1| Ribonuclease III [Corynebacterium pseudotuberculosis PAT10]
gi|385807817|ref|YP_005844214.1| Ribonuclease III [Corynebacterium pseudotuberculosis 267]
gi|386740669|ref|YP_006213849.1| Ribonuclease III [Corynebacterium pseudotuberculosis 31]
gi|387136856|ref|YP_005692836.1| ribonuclease III [Corynebacterium pseudotuberculosis 42/02-A]
gi|387138932|ref|YP_005694911.1| Ribonuclease III [Corynebacterium pseudotuberculosis CIP 52.97]
gi|387140921|ref|YP_005696899.1| ribonuclease III [Corynebacterium pseudotuberculosis 1/06-A]
gi|389850686|ref|YP_006352921.1| Ribonuclease III [Corynebacterium pseudotuberculosis 258]
gi|392400864|ref|YP_006437464.1| ribonuclease III [Corynebacterium pseudotuberculosis Cp162]
gi|300686211|gb|ADK29133.1| ribonuclease III [Corynebacterium pseudotuberculosis FRC41]
gi|302206463|gb|ADL10805.1| Ribonuclease III [Corynebacterium pseudotuberculosis C231]
gi|302331018|gb|ADL21212.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1002]
gi|308276705|gb|ADO26604.1| Ribonuclease III [Corynebacterium pseudotuberculosis I19]
gi|341825146|gb|AEK92667.1| Ribonuclease III [Corynebacterium pseudotuberculosis PAT10]
gi|348607301|gb|AEP70574.1| Ribonuclease III [Corynebacterium pseudotuberculosis 42/02-A]
gi|349735410|gb|AEQ06888.1| Ribonuclease III [Corynebacterium pseudotuberculosis CIP 52.97]
gi|355392712|gb|AER69377.1| Ribonuclease III [Corynebacterium pseudotuberculosis 1/06-A]
gi|371576227|gb|AEX39830.1| Ribonuclease III [Corynebacterium pseudotuberculosis 3/99-5]
gi|377654341|gb|AFB72690.1| Ribonuclease III [Corynebacterium pseudotuberculosis 316]
gi|380870017|gb|AFF22491.1| Ribonuclease III [Corynebacterium pseudotuberculosis P54B96]
gi|383805210|gb|AFH52289.1| Ribonuclease III [Corynebacterium pseudotuberculosis 267]
gi|384477363|gb|AFH91159.1| Ribonuclease III [Corynebacterium pseudotuberculosis 31]
gi|388247992|gb|AFK16983.1| Ribonuclease III [Corynebacterium pseudotuberculosis 258]
gi|390531942|gb|AFM07671.1| Ribonuclease III [Corynebacterium pseudotuberculosis Cp162]
Length = 249
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Query: 151 DQLGDDNPAKHFDTLLYLAFQH-PFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQR 209
D LG D P LL LA H F N + + RL FLG VL L+ ++
Sbjct: 28 DSLGIDIPRD----LLMLALTHRSFANENGSL---PNNERLEFLGDAVLGLSVASKLYEQ 80
Query: 210 YPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWAL 269
YP + + + + ++ R L + L + I +++E + AL
Sbjct: 81 YPSRAESDISKMRASIVSRYGLADIAREIKLGSFILLGKGELMTNGRDKESILADTTEAL 140
Query: 270 FGAIYLCFGFPEVYRVLFEVF 290
GAIYL GF + +F
Sbjct: 141 LGAIYLAHGFEVARNTVLRLF 161
>gi|423317462|ref|ZP_17295367.1| hypothetical protein HMPREF9699_01938 [Bergeyella zoohelcum ATCC
43767]
gi|405580334|gb|EKB54395.1| hypothetical protein HMPREF9699_01938 [Bergeyella zoohelcum ATCC
43767]
Length = 259
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 37/204 (18%)
Query: 170 FQHPFCERNKARHVRA-GHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
++ F RN + RA + RL FLG +L + + YPRE+ + + ++ R
Sbjct: 45 YKEAFSLRNSGKKSRAKNYERLEFLGDSILGSIISCYLYEHYPRENEGFLTQMKSKIVNR 104
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
+NL K + L LI +++ E ++ AL GAIYL G+ ++
Sbjct: 105 KNLNKVGEDLQLTRLI-----INQNANALGENIHGNLLEALIGAIYLDKGYDMCKSIVLT 159
Query: 289 VFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQD-------------------VAA 329
+ PE + +++ + ++G L W + +
Sbjct: 160 KL-LPPET----------IATLEHKIISYKGLLLEWSQKHKHILQYETQEEILPNSKINS 208
Query: 330 YKASFILLSFHSVTNKTENNKKET 353
+KA F+L+ V N T+++KK+
Sbjct: 209 FKA-FVLIDGEKVANATDSSKKKA 231
>gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1]
gi|189043372|sp|A5IN74.1|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1]
Length = 240
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 163 DTLLYLAFQHP--FCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H E+N+A R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V ++ R NL K+ +F ++ ++R+ + F AL
Sbjct: 83 RAKSAAASEEVLAMVSRELNLGKF---------LFLGKGEEKTGGRDRDSILADAFEALL 133
Query: 271 GAIYLCFGFPEV 282
AIYL G+ ++
Sbjct: 134 AAIYLDQGYHKI 145
>gi|406673251|ref|ZP_11080475.1| hypothetical protein HMPREF9700_01017 [Bergeyella zoohelcum CCUG
30536]
gi|405586713|gb|EKB60463.1| hypothetical protein HMPREF9700_01017 [Bergeyella zoohelcum CCUG
30536]
Length = 259
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 37/204 (18%)
Query: 170 FQHPFCERNKARHVRA-GHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
++ F RN + RA + RL FLG +L + + YPRE+ + + ++ R
Sbjct: 45 YKEAFSLRNSGKKSRAKNYERLEFLGDSILGSIISCYLYEHYPRENEGFLTQMKSKIVNR 104
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
+NL K + L LI +++ E ++ AL GAIYL G+ ++
Sbjct: 105 KNLNKVGEDLQLTRLI-----INQNANALGENIHGNLLEALIGAIYLDKGYDMCKSIVLT 159
Query: 289 VFGMDPEDKECQPKLRRQLEDVDYVSVEFEGNKLTWQD-------------------VAA 329
+ PE + +++ + ++G L W + +
Sbjct: 160 KL-LPPET----------IATLEHKIISYKGLLLEWSQKHKHILQYETQEEILPNSKINS 208
Query: 330 YKASFILLSFHSVTNKTENNKKET 353
+KA F+L+ V N T+++KK+
Sbjct: 209 FKA-FVLIDGEKVANATDSSKKKA 231
>gi|402496724|ref|YP_006555984.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649997|emb|CCF78167.1| dsRNA-specific ribonuclease [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 235
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
++L A HP + +++ + RL FLG +L + + +P+E + +R
Sbjct: 20 SILKEALTHPSLNKRNSKNQIENYERLEFLGDSILNMVVSTILFKLFPKEKEGRLAKRKT 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
L+ + K L + I + K +++ AL GAIY+ GF V
Sbjct: 80 DLVCGSTIANVAKVIKLGDFIIMDNSEQCNGGKYNLKNLENALEALIGAIYIDGGFRNVE 139
Query: 284 R 284
R
Sbjct: 140 R 140
>gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
Length = 224
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H ++N + RL FLG VL+L EF ++ E+ + +
Sbjct: 20 LLIYALTHKSAKKN------YNNERLEFLGDAVLDLVVGEFLFHKFKNEAEGDLSKLRAA 73
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
L+ ++ K + +L + IF K + + F AL GA++L GF +
Sbjct: 74 LVNEKSFAKIATSLNLGDFIFMSIAEQNNGGKTKPSILSDTFEALIGALHLEAGFIKAKE 133
Query: 285 V 285
+
Sbjct: 134 I 134
>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
gi|189043362|sp|A8AWC2.1|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
substr. CH1]
Length = 232
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+LL AF H N+ R ++ H+ RL FLG VL+L E+ ++YP+ + +
Sbjct: 20 SLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRPEGDLTKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + I ++ +ERE + +F A GA+ L G V
Sbjct: 79 STIVREESLAGFSRDCQFDRFIKLGKGEEKSGGRERETILGDLFEAFLGALLLDKGLEVV 138
Query: 283 YRVLFEVF 290
+++V
Sbjct: 139 KNFIYQVM 146
>gi|406967857|gb|EKD92839.1| hypothetical protein ACD_28C00319G0003 [uncultured bacterium]
Length = 232
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 170 FQHPFCER---NKARHV-RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
+H F + N+A + R + RL FLG VLEL EF + YP + R L
Sbjct: 23 LEHVFVHKSYLNEAHNGPRESNERLEFLGDAVLELVVTEFLFKNYPNDEGELTNWRS-AL 81
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRV 285
+ +L K +L +F ++ + + + + F AL GAIYL G+ ++
Sbjct: 82 VKGSHLAHIAKELNLGEYLFLSHGEEKSGGRTKNYILANTFEALLGAIYLDKGYEVAHKF 141
Query: 286 L 286
+
Sbjct: 142 I 142
>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
Length = 265
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL+ AF H R + RL FLG VLEL +F ++YP S + +
Sbjct: 51 EALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLELTVSQFLFKKYPTMSEGELTKLR 110
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + L+ + + R + VF A GA+YL G V
Sbjct: 111 AAVVCEPSLVTFANEMDFGKLVLLGKGEEMTGGRSRPALLADVFEAFIGALYLDQGLDTV 170
Query: 283 YRVLFEV 289
+L +V
Sbjct: 171 VTILKKV 177
>gi|347761796|ref|YP_004869357.1| ribonuclease III [Gluconacetobacter xylinus NBRC 3288]
gi|347580766|dbj|BAK84987.1| ribonuclease III [Gluconacetobacter xylinus NBRC 3288]
Length = 258
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 165 LLYLAFQHPFC--ERNKARHVR-------AG-HSRLCFLGQFVLELAFCEFFLQRYPRES 214
LL A H ER+ R +R AG + RL F+G VL L E+ L+R+P E
Sbjct: 27 LLLRALTHRSAAHERSGNRRMRQTVATRGAGSNERLEFIGDRVLGLIMAEWLLERFPAEQ 86
Query: 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274
+ R L+ R L + A +LQ+ + + R +E + A+ GAIY
Sbjct: 87 EGALGPRHAHLVSRTVLAEVAHAMALQSALDVAEHEARAGVREMANVLADAVEAILGAIY 146
Query: 275 LCFGF 279
L G
Sbjct: 147 LDGGL 151
>gi|421872840|ref|ZP_16304457.1| ribonuclease III [Brevibacillus laterosporus GI-9]
gi|372458255|emb|CCF14006.1| ribonuclease III [Brevibacillus laterosporus GI-9]
Length = 229
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
++L+ AF H + + + + + + RL FLG VLEL +F + +P+ S M +
Sbjct: 17 ESLMRQAFTHSSYVNEQRGKRI-SDNERLEFLGDAVLELTVSQFLYKMFPKMSEGEMTKL 75
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L K+ + L+ + ++R + VF A GA+YL G
Sbjct: 76 RAAIVCEPSLVKFAELLQFGELVLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDA 135
Query: 282 VYRVL 286
V++ L
Sbjct: 136 VFQFL 140
>gi|330717913|ref|ZP_08312513.1| ribonuclease III [Leuconostoc fallax KCTC 3537]
Length = 236
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI-- 244
+ RL FLG V++ E+ +RYP+ + E ++ R+ + + L I
Sbjct: 45 YQRLEFLGDAVMQETVAEYLFRRYPKWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRL 104
Query: 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR----VLFEVFGMDPEDK--E 298
+EM+ ++R+ ++ ++ A GA+YL G V R LF D D +
Sbjct: 105 GKGEEMNGA--RDRDSLLEDIWEAFIGALYLDQGADTVKRFLDATLFAAVDTDFFDHFID 162
Query: 299 CQPKLRRQLE-----DVDYVSV 315
+ +L+ +L+ D+DY ++
Sbjct: 163 FKSRLQEKLQANGPVDIDYNTI 184
>gi|255281054|ref|ZP_05345609.1| ribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268502|gb|EET61707.1| ribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 230
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 138 EAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFV 197
E +Q GYS + + L +N +H + +K H++ + RL FLG V
Sbjct: 7 ELEQMTGYSFKDKELL--ENALRH----------SSYANEHKKYHLKD-NERLEFLGDAV 53
Query: 198 LELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE 257
LEL+ E+ + YP+ M + ++ L + A L + + ++ +
Sbjct: 54 LELSSSEYLYRHYPKMKEGEMTKLRASIVCEPTLAQCAAAIELGSFLRLGRGEEQTGGRH 113
Query: 258 REPPVKSVFWALFGAIYLCFGFP 280
R+ V AL GAI+L GF
Sbjct: 114 RDSVVSDAMEALIGAIFLDGGFT 136
>gi|226313209|ref|YP_002773103.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
gi|226096157|dbj|BAH44599.1| ribonuclease III [Brevibacillus brevis NBRC 100599]
Length = 246
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+++L AF H + + + + + + RL FLG VLEL +F + +P+ S M +
Sbjct: 35 ESVLRQAFTHSSYVNEQRGKRI-SDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMTKL 93
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L K+ + + +L+ + ++R + VF A GA+YL G
Sbjct: 94 RAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLEA 153
Query: 282 VY 283
V+
Sbjct: 154 VF 155
>gi|339009341|ref|ZP_08641913.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
gi|338773819|gb|EGP33350.1| ribonuclease 3 [Brevibacillus laterosporus LMG 15441]
Length = 239
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
++L+ AF H + + + + + + RL FLG VLEL +F + +P+ S M +
Sbjct: 27 ESLMRQAFTHSSYVNEQRGKRI-SDNERLEFLGDAVLELTVSQFLYKMFPKMSEGEMTKL 85
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L K+ + L+ + ++R + VF A GA+YL G
Sbjct: 86 RAAIVCEPSLVKFAELLQFGELVLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDA 145
Query: 282 VYRVL 286
V++ L
Sbjct: 146 VFQFL 150
>gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
Length = 258
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL F+G VL L E+ L+R+P E + R L+ R L + A +LQ+ + +
Sbjct: 61 RLEFIGDRVLGLVMAEWLLERFPTEQEGALGPRHAHLVSRTVLAEVAHAMALQSALDVAE 120
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
R ++ + A+ GAIYL G
Sbjct: 121 HEARAGVRQMANVLADAVEAILGAIYLDGGL 151
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ +++P S + +
Sbjct: 32 EKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLFKKFPHMSEGELTKLR 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ A S L+ + + R + VF A GA+YL G V
Sbjct: 92 AAIVCEPSLVKFANALSFGELVLLGKGEELTGGRTRPALLADVFEAFIGALYLDKGMDAV 151
Query: 283 YRVL 286
+ L
Sbjct: 152 MQFL 155
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H ++LL AF H + + RL FLG VLEL +F ++YP S + +
Sbjct: 28 HDESLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTISKFLFKKYPIMSEGELTK 87
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
++ +L L+ + +ER + VF A GA+YL G
Sbjct: 88 MRAAIVCEPSLVTLANDLQFGELVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQGLE 147
Query: 281 EVYRVL 286
V + L
Sbjct: 148 VVNQFL 153
>gi|374375833|ref|ZP_09633491.1| Ribonuclease 3 [Niabella soli DSM 19437]
gi|373232673|gb|EHP52468.1| Ribonuclease 3 [Niabella soli DSM 19437]
Length = 246
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 170 FQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRR 229
++ R+ +V + RL +LG VL ++ +RYP + + E ++ R+
Sbjct: 34 YKTALTHRSLKENVDENNERLEYLGDAVLSALIADYLFKRYPYQGEGFLTEMRSKMVNRQ 93
Query: 230 NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFE 288
L + +L+ I F+++D +R + AL GAIYL G+ + + +++
Sbjct: 94 QLNEVALKMNLKK-IANFNKLDHTLRGSH--IFGNTLEALVGAIYLDIGYKKTCKWVYD 149
>gi|375362237|ref|YP_005130276.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731737|ref|ZP_16170860.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347036|ref|YP_007445667.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|371568231|emb|CCF05081.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407073950|gb|EKE46940.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850794|gb|AGF27786.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 249
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEVYRVLFE 288
V + L E
Sbjct: 150 LEPVQQFLKE 159
>gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180]
gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180]
Length = 239
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 137 LEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQF 196
L ++ALGYS + LL A H C+ + + RL FLG
Sbjct: 19 LTLEKALGYSFKDK-------------RLLEQALTHKSCK------LALNNERLEFLGDA 59
Query: 197 VLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRK 256
VL L E ++ + + + ++ K KA SLQ+ + + I K
Sbjct: 60 VLGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAISLQDYLHVSSSEE--ISK 117
Query: 257 EREPP--VKSVFWALFGAIYLCFGFPEVYRVL 286
RE P + S F AL +YL G +V +++
Sbjct: 118 GREKPSILSSAFEALMAGVYLEAGLAKVRKII 149
>gi|255037664|ref|YP_003088285.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
gi|254950420|gb|ACT95120.1| ribonuclease III [Dyadobacter fermentans DSM 18053]
Length = 248
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 168 LAFQHPFCERNKA-RHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLI 226
LAF+H R A + R + RL +LG VL + EF +YP + + E ++
Sbjct: 43 LAFRHTSASRETAIKGFRESNERLEYLGDAVLGMVVAEFLFTKYPYKDEGFLTEIRSRIV 102
Query: 227 GRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
R +L + + L LI +D R + R A GAIYL GF
Sbjct: 103 NRESLNQISRKLGLDRLI-EYDGNRRGM-SPRSSMYGDALEAFVGAIYLDKGF 153
>gi|433462279|ref|ZP_20419866.1| ribonuclease III [Halobacillus sp. BAB-2008]
gi|432188967|gb|ELK46109.1| ribonuclease III [Halobacillus sp. BAB-2008]
Length = 230
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
+LL AF H + R + RL FLG VLEL ++ + +P + + +
Sbjct: 19 SLLEQAFTHSSYVNEHRKTDREDNERLEFLGDAVLELGVSQYLYREFPDMAEGELTKFRA 78
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L ++ + Q LI + + R + VF A GA+YL G+ +V
Sbjct: 79 SIVCEVSLVEFANELNFQELILLGKGEEMTGGRNRPALLADVFEAFIGALYLDQGYDKVI 138
Query: 284 RVL 286
+ L
Sbjct: 139 QFL 141
>gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
Length = 238
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+LL A HP N+AR RA H+ RL FLG VLELA + YP S + +
Sbjct: 28 SLLEEALTHP-SYVNEARE-RATHNERLEFLGDAVLELAISTYLYVAYPHCSEGELTKMR 85
Query: 223 FGLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
L+ L + + L +L EM ER+ +++VF A+ GA+YL G+
Sbjct: 86 ASLVQSETLARLARRLHLGAHLRMGRGEM-LGGGAERQNNLENVFEAVIGAVYLDRGWDA 144
Query: 282 VY 283
Y
Sbjct: 145 AY 146
>gi|394993931|ref|ZP_10386670.1| ribonuclease III [Bacillus sp. 916]
gi|452855540|ref|YP_007497223.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|393805255|gb|EJD66635.1| ribonuclease III [Bacillus sp. 916]
gi|452079800|emb|CCP21557.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 249
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEVYRVL 286
V + L
Sbjct: 150 LDPVQQFL 157
>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
gi|429505144|ref|YP_007186328.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|189043290|sp|A7Z4L3.1|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
gi|429486734|gb|AFZ90658.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 249
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEVYRVL 286
V + L
Sbjct: 150 LDPVQQFL 157
>gi|408673367|ref|YP_006873115.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
gi|387854991|gb|AFK03088.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
Length = 248
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 165 LLY-LAFQHPFCER-NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
LLY LAF+H + R + RL +LG VL + E+ ++YP + + E
Sbjct: 38 LLYQLAFRHTSASKETNIGGFRESNERLEYLGDSVLGMIVAEYLFKKYPFKDEGFLTEIR 97
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ R +L + L+ LI FD + + R AL GAIYL GF
Sbjct: 98 SRIVNRESLNILARKIGLERLI-EFD--GQRVAHNRTSMYGDAMEALIGAIYLDKGF 151
>gi|385264719|ref|ZP_10042806.1| ribonuclease III [Bacillus sp. 5B6]
gi|385149215|gb|EIF13152.1| ribonuclease III [Bacillus sp. 5B6]
Length = 253
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 34 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 93
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 94 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 153
Query: 279 FPEVYRVL 286
V + L
Sbjct: 154 LEPVQQFL 161
>gi|384265175|ref|YP_005420882.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898172|ref|YP_006328468.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
gi|380498528|emb|CCG49566.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172282|gb|AFJ61743.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
Length = 249
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEVYRVL 286
V + L
Sbjct: 150 LEPVQQFL 157
>gi|381159186|ref|ZP_09868419.1| ribonuclease III [Thiorhodovibrio sp. 970]
gi|380880544|gb|EIC22635.1| ribonuclease III [Thiorhodovibrio sp. 970]
Length = 233
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 170 FQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRR 229
F+ R+ RH + RL FLG +L E +R+P + L+ +
Sbjct: 23 FEQALTHRSAGRH---NNERLEFLGDALLGFVIAEALWRRFPDADEGRLTRARASLVKQE 79
Query: 230 NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEV 289
+L K +A +L + R R+ + F AL GA YL GF ++ +
Sbjct: 80 SLAKQARALALGEYLRMGSGEIRTGGHARDSILSDAFEALLGAYYLDQGFDGARALILRL 139
Query: 290 F 290
F
Sbjct: 140 F 140
>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|384159423|ref|YP_005541496.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
gi|384164142|ref|YP_005545521.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
gi|384168470|ref|YP_005549848.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
gi|341827749|gb|AEK89000.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
Length = 249
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEVYRVL 286
V + L
Sbjct: 150 LEPVQQFL 157
>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
Length = 222
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 169 AFQHPFCERNKAR----HVRAGHS------RLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
A + F ++N R H A HS RL FLG LELA ++ +P S +
Sbjct: 7 ALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSEGEL 66
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-KEREPPVKSVFWALFGAIYLCF 277
++ + L K + +L+N I F + +++ + E + + V A+FGAI++
Sbjct: 67 TNIRAAVVCSQTLSKIAEKLNLKNHII-FGKREKMEKFHENKSILADVVEAIFGAIFIES 125
Query: 278 GFPEVYRVL 286
GF ++ +++
Sbjct: 126 GFEKLEKII 134
>gi|415886541|ref|ZP_11548321.1| ribonuclease III [Bacillus methanolicus MGA3]
gi|387587228|gb|EIJ79551.1| ribonuclease III [Bacillus methanolicus MGA3]
Length = 252
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL +F ++YP S + +
Sbjct: 33 EKLLKQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLFKKYPMMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + S L+ + +ER + VF A GA+YL G V
Sbjct: 93 AAVVCEPSLVSFANELSFGELVLLGKGEEMTGGRERPALLADVFEAFIGALYLDKGIETV 152
Query: 283 YRVL 286
+ L
Sbjct: 153 TKFL 156
>gi|336437038|ref|ZP_08616747.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336006172|gb|EGN36208.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 236
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
+LL A +H K + + RL FLG VLEL EF + YP+ S + +
Sbjct: 27 SLLERALRHSSFTNEKRMPKQECNERLEFLGDAVLELVSSEFLFKEYPKVSEGELTKTRA 86
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + L + + ++R+ AL GAIYL GF
Sbjct: 87 SMVCEPSLAFCARDIDLGKYLLLGKGEEATGGRQRDSVTSDAMEALIGAIYLDSGFTNAK 146
Query: 284 RVLFEVFGMDPEDK 297
+ + D EDK
Sbjct: 147 EFIHKFILSDLEDK 160
>gi|313896309|ref|ZP_07829862.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
gi|320529287|ref|ZP_08030377.1| ribonuclease III [Selenomonas artemidis F0399]
gi|312975108|gb|EFR40570.1| ribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
gi|320138461|gb|EFW30353.1| ribonuclease III [Selenomonas artemidis F0399]
Length = 238
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL A HP N++R + RL FLG VLELA + + +P+ S + +
Sbjct: 28 ALLDEALTHPSYA-NESRDSIPHNERLEFLGDAVLELASSTYLYKHFPQCSEGELTKMRA 86
Query: 224 GLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
L+ L + + L ++L E+ R +R+ +++VF A+ GA+YL G+
Sbjct: 87 SLVQSDTLARLARRLHLGRHLRLGHGEL-RGGGADRQNNLENVFEAVIGAVYLDRGWESA 145
Query: 283 -----YRVLFEVFGMDPEDKECQPK--LRRQLEDVDYVSVEFE 318
+++ E+ + P C K L+ ++ ++SV +E
Sbjct: 146 RDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMSVAYE 188
>gi|431794580|ref|YP_007221485.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784806|gb|AGA70089.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 262
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG +L+ E+ YP + + ++ L + K L +
Sbjct: 73 NQRLEFLGDAILDFVVAEYLYLSYPERPEGELTKMRAAVVNESTLARTAKKIQLGKELL- 131
Query: 247 FDEMDRLIRKEREPPVKSVFW-ALFGAIYLCFGFPEVYRVLF 287
+ +++ P + + W A+ GAIYL +GF E RV+
Sbjct: 132 LGKGEQVSGGRERPSILADAWEAVVGAIYLQYGFQEARRVIL 173
>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
Length = 228
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 45/119 (37%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H LL A H RH + RL FLG V+ L +P + +
Sbjct: 13 HNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVNFPDMPEGELTK 72
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
L+ R+L ++ L N + + ++R ++ F AL GAIYL G
Sbjct: 73 LRASLVCDRSLAEFAGRIDLGNQLIMGKGEEHSGGRQRRSNLEDAFEALVGAIYLDGGL 131
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H ++A H A + RL FLG VL + C+ +P +
Sbjct: 26 LLRAALTHS----SRAVHPLASNERLEFLGDSVLGMIVCDTLFHLFPEAKEGDLTRIKSV 81
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS---VFWALFGAIYLCFGFPE 281
++ R+ K + LQN + + + + + P + VF ++ GAIYL GF
Sbjct: 82 VVSRQTCTKIARKLGLQNYLL----LGKGMGPSSQAPASTLANVFESVVGAIYLDSGFEA 137
Query: 282 VYRVLFEVFGMDPE-----DKECQPKLRRQLE 308
R F + + PE ++E Q + QL+
Sbjct: 138 ARR--FVLNNLLPEIESSKNEESQGNYKSQLQ 167
>gi|212702556|ref|ZP_03310684.1| hypothetical protein DESPIG_00579 [Desulfovibrio piger ATCC 29098]
gi|212673997|gb|EEB34480.1| ribonuclease III [Desulfovibrio piger ATCC 29098]
Length = 243
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%)
Query: 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNL 243
+A + RL FLG VLEL R+P+ M L+G +L + + + L
Sbjct: 50 QAHNERLEFLGDAVLELCISWELFTRFPQAREGDMTRVRSQLVGTTSLAQRARETGIDQL 109
Query: 244 IFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG 291
+ ++ + R+ + VF A+ ++Y G+ +V+ +FG
Sbjct: 110 LRLGRGEEQQGGRSRDAVLSDVFEAVLASVYEDGGYAAAQKVVARIFG 157
>gi|336053919|ref|YP_004562206.1| ribonuclease III [Lactobacillus kefiranofaciens ZW3]
gi|333957296|gb|AEG40104.1| Ribonuclease III [Lactobacillus kefiranofaciens ZW3]
Length = 228
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + +L FLG VLELA ++ + YP+ + +
Sbjct: 21 EKLLEEAFTHSSYSNEHSNDGIRDYEKLEFLGDAVLELAVSDYLYRHYPKLNEGELTRLR 80
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ ++ Q I + ++ + R+ ++ VF A GA++L G P V
Sbjct: 81 SNIVRTEGFSEFAIECGFQTEIHLGNGEEKAGARRRKTLLEDVFEAFNGALFLDQGMPAV 140
Query: 283 YRVL 286
L
Sbjct: 141 EHFL 144
>gi|402303315|ref|ZP_10822411.1| ribonuclease III [Selenomonas sp. FOBRC9]
gi|400378945|gb|EJP31795.1| ribonuclease III [Selenomonas sp. FOBRC9]
Length = 238
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL A HP N++R + RL FLG VLELA + + +P+ S + +
Sbjct: 28 ALLDEALTHPSYA-NESRDSIPHNERLEFLGDAVLELASSTYLYKHFPQCSEGELTKMRA 86
Query: 224 GLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
L+ L + + L ++L E+ R +R+ +++VF A+ GA+YL G+
Sbjct: 87 SLVQSDTLARLARRLHLGRHLRLGHGEL-RGGGADRQNNLENVFEAVIGAVYLDRGWESA 145
Query: 283 -----YRVLFEVFGMDPEDKECQPK--LRRQLEDVDYVSVEFE 318
+++ E+ + P C K L+ ++ ++SV +E
Sbjct: 146 RDYVCTQLVPEIGNVQPAQVRCDYKTTLQEHVQKDRHMSVAYE 188
>gi|452995961|emb|CCQ92364.1| ribonuclease III [Clostridium ultunense Esp]
Length = 232
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL LAF H R V + RL FLG VLEL + +R P S M +
Sbjct: 21 EGLLRLAFTHASYINEHHRRVDEDNERLEFLGDAVLELTVSHYLYRRTPPMSEGEMTKLR 80
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + + I + + R + VF A GA+YL G V
Sbjct: 81 ASIVCEPSLVSYADSLGFGDYILLGKGEELAGGRSRPALLADVFEAFIGALYLDQGLHAV 140
Query: 283 YRVL 286
R L
Sbjct: 141 ERFL 144
>gi|224542836|ref|ZP_03683375.1| hypothetical protein CATMIT_02028 [Catenibacterium mitsuokai DSM
15897]
gi|224524248|gb|EEF93353.1| ribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 230
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
AF H H+ + RL F+G VL+L EF +P + + L+
Sbjct: 23 AFTHSSYANESNAHI-PDYERLEFMGDAVLQLFVSEFIFALHPEYKEGQLTQLRSKLVRE 81
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
+L ++ + L L++ ++ + RE + +++ + GA+YL G +V R+L
Sbjct: 82 ESLARFSEELHLGELLYLGVGEEKSGGRHRESVLANIYESFIGALYLDCGKEQVIRIL 139
>gi|398814573|ref|ZP_10573254.1| ribonuclease III [Brevibacillus sp. BC25]
gi|398036842|gb|EJL30051.1| ribonuclease III [Brevibacillus sp. BC25]
Length = 233
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+++L AF H + + + + + + RL FLG VLEL +F + +P+ S M +
Sbjct: 22 ESVLRQAFTHSSYVNEQRGKRI-SDNERLEFLGDAVLELTVSQFLYKTFPKMSEGEMTKL 80
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L K+ + + +L+ + ++R + VF A GA+YL G
Sbjct: 81 RAAIVCEPSLVKFAELLNFGDLVLLGKGEELTGGRQRPALLADVFEAFVGALYLDQGLDA 140
Query: 282 VY 283
V+
Sbjct: 141 VF 142
>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
Length = 222
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRN---LPKWIKAASLQ 241
A + RL FLG V++L ++ ++ R S + + L+ ++ L K++ L
Sbjct: 31 ANNERLEFLGDAVMDLVIGDYLFHKFSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLI 90
Query: 242 NLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
N I P +E + + + + F AL GAIYL GF V + F
Sbjct: 91 N-ISPAEEHNG--GRAKASILSDAFEALMGAIYLESGFDAVRAASLKAF 136
>gi|424782431|ref|ZP_18209278.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
gi|421959751|gb|EKU11359.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
Length = 222
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRN---LPKWIKAASLQ 241
A + RL FLG V++L ++ ++ R S + + L+ ++ L K++ L
Sbjct: 31 ANNERLEFLGDAVMDLVIGDYLFHKFSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLI 90
Query: 242 NLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
N I P +E + + + + F AL GAIYL GF V + F
Sbjct: 91 N-ISPAEEHNG--GRAKASILSDAFEALMGAIYLESGFDAVRAASLKAF 136
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL F+G VL L E+ ++R+P E + R+ L+ R++L + + + L+
Sbjct: 39 RLEFIGDRVLGLLIAEWLIERFPHEREGGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSP 98
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
R + R + AL GA+YL G
Sbjct: 99 GESRRGVRNRATVLADALEALIGALYLDGGL 129
>gi|292670166|ref|ZP_06603592.1| ribonuclease III [Selenomonas noxia ATCC 43541]
gi|292648118|gb|EFF66090.1| ribonuclease III [Selenomonas noxia ATCC 43541]
Length = 238
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL A HP N+A+ + RL FLG VLELA + R+P S + +
Sbjct: 28 ALLDEALTHP-SYTNEAKDTIPHNERLEFLGDAVLELASSTYLYARFPDCSEGELTKMRA 86
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE-------REPPVKSVFWALFGAIYLC 276
L+ L + +A L + + RL R E R+ +++ F A+ GA+YL
Sbjct: 87 SLVQSNTLARLARALDLGSCL-------RLGRGEFHNGGADRQNNLENAFEAVIGAVYLD 139
Query: 277 FGF 279
G+
Sbjct: 140 AGW 142
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL F+G VL L E+ ++R+P E + R+ L+ R++L + + + L+
Sbjct: 39 RLEFIGDRVLGLLIAEWLIERFPHEREGGLGPRLAHLVSRQSLAEIAEHGGIAGLLSVSP 98
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
R + R + AL GA+YL G
Sbjct: 99 GESRRGVRNRATVLADALEALIGALYLDGGL 129
>gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
Length = 227
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIF- 245
+ RL +LG VL+L E+ +P+ + + L+ + K K +L +F
Sbjct: 35 NERLEYLGDAVLDLIVGEYLYNLFPKAEEGILSKLRAALVNEESFDKLAKRLNLGKYLFL 94
Query: 246 -PFDEMDRLIRKEREPP--VKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPK 302
P +E + K RE P + S F AL GA+YL GF + + ++ KE PK
Sbjct: 95 SPAEENN----KGREKPSILSSAFEALIGALYLEAGFDKAKEIALKLL------KEEYPK 144
Query: 303 L 303
+
Sbjct: 145 I 145
>gi|407977619|ref|ZP_11158456.1| ribonuclease III [Bacillus sp. HYC-10]
gi|407415872|gb|EKF37453.1| ribonuclease III [Bacillus sp. HYC-10]
Length = 247
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 28 HFKNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 87
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 88 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 147
Query: 279 FPEVYRVL 286
V + L
Sbjct: 148 LEPVEQFL 155
>gi|391228467|ref|ZP_10264673.1| ribonuclease III [Opitutaceae bacterium TAV1]
gi|391218128|gb|EIP96548.1| ribonuclease III [Opitutaceae bacterium TAV1]
Length = 271
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL LG VL+L E +P E P+ + L L + + L +
Sbjct: 70 RLELLGDAVLQLLLTEKLFHLFPAEREGPLSKHRAVLSRGSFLAQLARETGLDAALRLGS 129
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG-----MDPEDKECQPKL 303
++ ++R+ ++ F ALFGA++L G RVL ++G + PK
Sbjct: 130 SEEQTGGRQRDSTLEDAFEALFGALWLDAGLEPARRVLHAIYGPLEARLSSNAGADNPKG 189
Query: 304 RRQLEDVDYVSVEFEGNKLTWQ 325
R Q + V E+ N L ++
Sbjct: 190 RLQ----ERVQPEYGNNALRYE 207
>gi|269838233|ref|YP_003320461.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
gi|269787496|gb|ACZ39639.1| ribonuclease III [Sphaerobacter thermophilus DSM 20745]
Length = 259
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 183 VRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN 242
VR + RL FLG VL + EF +R+PR + L+ L +W +
Sbjct: 57 VRDSNERLEFLGDSVLGMITAEFLYRRFPRLPEGMLTAYRTALVRTETLARWARR----- 111
Query: 243 LIFPFDEMDRLIRKE-------REPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295
F DE+ L R E R+ + F A+ AIYL G R L ++ D E
Sbjct: 112 --FGLDELLYLGRGEITADGEIRDRILAGAFEAVIAAIYLDRGIRATRRFLRQLLIEDAE 169
>gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21]
gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21]
Length = 224
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H ++N + RL FLG VL+L EF ++ E+ + +
Sbjct: 20 LLIYALTHKSAKKN------YNNERLEFLGDAVLDLVVGEFLFHKFKNEAEGDLSKLRAA 73
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
L+ ++ K + +L IF K + + F AL GA++L GF +
Sbjct: 74 LVNEKSFAKIATSLNLGAFIFMSIAEQNNGGKTKPSILSDAFEALIGALHLEAGFIKAKE 133
Query: 285 V 285
+
Sbjct: 134 I 134
>gi|384135020|ref|YP_005517734.1| Ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289105|gb|AEJ43215.1| Ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 241
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 161 HFDTLLYLAFQHPFCERNKAR--HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
H LL AF H RN+ R HV + RL FLG VLEL +F + YP+ +
Sbjct: 17 HDINLLKQAFTHA-SYRNEHRKLHVED-NERLEFLGDAVLELVVSDFLYRTYPKMPEGEL 74
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS-------VFWALFG 271
++ +L ++ K S FD+ RL R E +S VF A G
Sbjct: 75 TRMRAAIVCEASLVRFAKRLS-------FDQYIRLGRGEERSGGRSRPALLADVFEAFLG 127
Query: 272 AIYLCFGFPEV 282
A+YL G V
Sbjct: 128 ALYLDQGLEAV 138
>gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
Length = 222
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 169 AFQHPFCERNKAR----HVRAGHS------RLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
A + F ++N R H A HS RL FLG LEL ++ +P S +
Sbjct: 7 ALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPELSEGEL 66
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-KEREPPVKSVFWALFGAIYLCF 277
++ + L K + +L+N I F + +++ + E + + V A+FGAI++
Sbjct: 67 TNIRAAVVCSQTLSKIAEKLNLKNHII-FGKREKMEKFHENKSILTDVVEAIFGAIFIES 125
Query: 278 GFPEVYRVL 286
GF ++ +++
Sbjct: 126 GFEKLEKII 134
>gi|339480187|ref|ZP_08655846.1| ribonuclease III [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 236
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 186 GHS--RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNL 243
GH RL FLG V+++ E+ +RYP + E ++ R+ + + L
Sbjct: 42 GHDYQRLEFLGDSVMQVTVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFARLVHLNEG 101
Query: 244 IFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
I + ++R+ ++ ++ A GA+YL G EV + L
Sbjct: 102 IRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGPKEVNQFL 144
>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
Length = 223
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 160 KHFDTLLYLAF--QHPFCERNKARHVRAG--HSRLCFLGQFVLELAFCEFFLQRYPRESP 215
KHF+ L F Q+ E + + G + RL FLG VL+L EF ++P
Sbjct: 5 KHFEKTLGYHFKAQNLLKEALTHKSAKKGTHNERLEFLGDAVLDLIIGEFLYNKFPNSRE 64
Query: 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
+ + ++ + K + ++ +F + ++ ++++ + + F A+ GAIYL
Sbjct: 65 GELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVIGAIYL 124
Query: 276 CFGF 279
G
Sbjct: 125 ESGL 128
>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
gi|189043369|sp|A6QCJ0.1|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
Length = 223
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VL+L E+ +++P+ + + L+ + L + I+
Sbjct: 36 NERLEFLGDAVLDLIVGEYLFKKFPKSDEGILSKIRASLVNESGFTLLARKIDLGSYIYL 95
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQ 306
+ +++ + + F A+ GA+YL G + ++ +EC PK+ Q
Sbjct: 96 SLAEENNNGRDKPSLLSNAFEAIIGAVYLEAGLDTAKEISIKLL------EECHPKIDLQ 149
Query: 307 LEDVDY 312
DY
Sbjct: 150 SLSKDY 155
>gi|399516063|ref|ZP_10757687.1| Ribonuclease III [Leuconostoc pseudomesenteroides 4882]
gi|398649157|emb|CCJ65714.1| Ribonuclease III [Leuconostoc pseudomesenteroides 4882]
Length = 236
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 186 GHS--RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNL 243
GH RL FLG V+++ E+ +RYP + E ++ R+ + + L
Sbjct: 42 GHDYQRLEFLGDSVMQVTVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFARLVHLNEG 101
Query: 244 IFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
I + ++R+ ++ ++ A GA+YL G EV + L
Sbjct: 102 IRLGKGEEMSGARDRDSLLEDIWEAFIGALYLDQGPKEVNQFL 144
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + + RL FLG VLEL ++ +++P+ S + +
Sbjct: 24 EKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYLFEQFPQMSEGELTKMR 83
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + A S +L+ + + R + VF A GA+YL G V
Sbjct: 84 AAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVFEAFIGALYLDQGIEAV 143
Query: 283 YRVL 286
+ L
Sbjct: 144 VQFL 147
>gi|339640388|ref|ZP_08661832.1| ribonuclease III [Streptococcus sp. oral taxon 056 str. F0418]
gi|339453657|gb|EGP66272.1| ribonuclease III [Streptococcus sp. oral taxon 056 str. F0418]
Length = 232
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+LL AF H N+ R ++ H+ RL FLG VL+L E+ +YP++ + +
Sbjct: 20 SLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYAKYPKKPEGDLTKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + + I ++ ++RE + +F A GA+ L G V
Sbjct: 79 STIVREESLAGFTRDCQFEKFIKLGKGEEKSGGRDRETILGDLFEAFLGALLLDKGIEAV 138
Query: 283 YRVLFEVF 290
L++
Sbjct: 139 RDFLYQTM 146
>gi|293376124|ref|ZP_06622372.1| ribonuclease III [Turicibacter sanguinis PC909]
gi|325841637|ref|ZP_08167414.1| ribonuclease III [Turicibacter sp. HGF1]
gi|292645251|gb|EFF63313.1| ribonuclease III [Turicibacter sanguinis PC909]
gi|325489915|gb|EGC92263.1| ribonuclease III [Turicibacter sp. HGF1]
Length = 236
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 169 AFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIG 227
AF H N+ RH++ + RL +LG VLEL + P S M + L+
Sbjct: 27 AFTHS-SYVNEHRHLKIEDNERLEYLGDAVLELTVSNYLFNLKPSLSEGEMTKIRAQLVC 85
Query: 228 RRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLF 287
+L + + +L L+ + +ER + F A GA+YL G VY +
Sbjct: 86 EPSLESYARNLNLGKLMLLGRGEENSGGRERPTVLADAFEAFVGAMYLDLGMDTVYSFVH 145
Query: 288 EVF 290
E+
Sbjct: 146 EII 148
>gi|209964796|ref|YP_002297711.1| ribonuclease III [Rhodospirillum centenum SW]
gi|209958262|gb|ACI98898.1| ribonuclease III [Rhodospirillum centenum SW]
Length = 236
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 160 KHFDTLLYLAFQHP---FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPA 216
+H D LL A HP ERN R G+ RL FLG VL L E+ L+R+P E+
Sbjct: 23 RHRD-LLVQALTHPSLGGVERNAGR----GYERLEFLGDRVLGLVIAEWLLERFPAEAEG 77
Query: 217 PMRERVFGLI 226
+ R L+
Sbjct: 78 ALARRHTALV 87
>gi|373850411|ref|ZP_09593212.1| Ribonuclease 3 [Opitutaceae bacterium TAV5]
gi|372476576|gb|EHP36585.1| Ribonuclease 3 [Opitutaceae bacterium TAV5]
Length = 271
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL LG VL+L E +P E P+ + L L + + L +
Sbjct: 70 RLELLGDAVLQLLLTEKLFHLFPAEREGPLSKHRAVLSRGSFLAQLARETGLDAALRLGS 129
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFG-----MDPEDKECQPKL 303
++ ++R+ ++ F ALFGA++L G RVL ++G + PK
Sbjct: 130 SEEQTGGRQRDSTLEDAFEALFGALWLDAGLEPARRVLHAIYGPLEARLSSNAGADNPKG 189
Query: 304 RRQLEDVDYVSVEFEGNKLTWQ 325
R Q + V E+ N L ++
Sbjct: 190 RLQ----ERVQPEYGNNALRYE 207
>gi|337287867|ref|YP_004627339.1| Ribonuclease 3 [Thermodesulfobacterium sp. OPB45]
gi|334901605|gb|AEH22411.1| Ribonuclease 3 [Thermodesulfobacterium geofontis OPF15]
Length = 237
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VL L Q++ + + ++ L+ + L K K +L + I+
Sbjct: 43 NERLEFLGDSVLNLCISLLLFQKFKEDREGALTQKRAYLVCKNTLIKISKKLNLCDYIYL 102
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++L +K +E AL GAI+L GF +
Sbjct: 103 GKREEKLDKKSKENICARAMEALIGAIFLEGGFSTTF 139
>gi|323351215|ref|ZP_08086871.1| ribonuclease III [Streptococcus sanguinis VMC66]
gi|422820878|ref|ZP_16869071.1| ribonuclease III [Streptococcus sanguinis SK353]
gi|422870540|ref|ZP_16917033.1| ribonuclease III [Streptococcus sanguinis SK1087]
gi|322122439|gb|EFX94150.1| ribonuclease III [Streptococcus sanguinis VMC66]
gi|324991496|gb|EGC23429.1| ribonuclease III [Streptococcus sanguinis SK353]
gi|328946755|gb|EGG40893.1| ribonuclease III [Streptococcus sanguinis SK1087]
Length = 232
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H N+ R ++ H+ RL FLG VL+L E+ +YP+ + +
Sbjct: 19 ETLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPEGDLSKL 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L + + + I ++ + R+ + +F A GA+ L G
Sbjct: 78 RSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEA 137
Query: 282 VYRVLFEVF 290
V L++V
Sbjct: 138 VKSFLYQVM 146
>gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
Length = 228
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAG---HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ LL AF H H AG + +L FLG VLELA + + YP+ + +
Sbjct: 21 EKLLEEAFTHSSYSN---EHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELT 77
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ ++ Q I + ++ + R+ ++ VF A GA+YL G
Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARNRKTLLEDVFEAFNGALYLDQGM 137
Query: 280 PEVYRVL 286
P V L
Sbjct: 138 PAVEHFL 144
>gi|429750568|ref|ZP_19283592.1| ribonuclease III [Capnocytophaga sp. oral taxon 332 str. F0381]
gi|429164539|gb|EKY06668.1| ribonuclease III [Capnocytophaga sp. oral taxon 332 str. F0381]
Length = 252
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
AF HP + KA R + RL FLG +L ++ P E+ + + ++ R
Sbjct: 43 AFTHPSYQYQKA--TRKSYERLEFLGDAILGAVIADYIFTNAPEENEGYLTKMRSKIVER 100
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL------CFGFPE 281
RNL + + L F R+ ++F AL GAIYL CF F E
Sbjct: 101 RNLNRLGEELDL----LSFLRTKLTPRQLGNNITGNLFEALIGAIYLDKGYKTCFSFIE 155
>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 222
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 138 EAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFV 197
E ++ALGY+ + D N LL LA H ++ + + R FLG
Sbjct: 3 EIERALGYTFK------DKN-------LLRLALTH----KSATHSNKNCYERFEFLGDAA 45
Query: 198 LELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIR-K 256
LELA ++ +P S + ++ + L K + +L+N I F + +++ +
Sbjct: 46 LELAVSKYLFVHFPELSEGELTNIRAAVVCSQTLSKVAEKLNLKNHII-FGKREKMEKFH 104
Query: 257 EREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
E + + V A+FGAI++ GF V +++
Sbjct: 105 ENKSILADVLEAIFGAIFIESGFDIVEKII 134
>gi|431931182|ref|YP_007244228.1| ribonuclease III [Thioflavicoccus mobilis 8321]
gi|431829485|gb|AGA90598.1| ribonuclease III [Thioflavicoccus mobilis 8321]
Length = 225
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLG +L + E QR+P S + L+ + L + + +L + +
Sbjct: 37 RLEFLGDALLGVVIAEVLWQRFPDASEGDLSRLRASLVNKEMLARLARDLTLGDYLVLGP 96
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM-------DPEDKECQP 301
R +R+ + A+F A+YL F V +V+ +F D DK+ +
Sbjct: 97 GEQRTGGHQRDSILADALEAIFAAVYLDADFHTVRQVILGIFEAALAETRDDQVDKDPKT 156
Query: 302 KLRRQLE 308
+L+ +L+
Sbjct: 157 RLQERLQ 163
>gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942]
gi|419823905|ref|ZP_14347438.1| ribonuclease III [Bacillus atrophaeus C89]
gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942]
gi|388471942|gb|EIM08732.1| ribonuclease III [Bacillus atrophaeus C89]
Length = 249
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL +F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEV 282
V
Sbjct: 150 LEPV 153
>gi|422855143|ref|ZP_16901801.1| ribonuclease III [Streptococcus sanguinis SK1]
gi|422862136|ref|ZP_16908768.1| ribonuclease III [Streptococcus sanguinis SK408]
gi|422865104|ref|ZP_16911729.1| ribonuclease III [Streptococcus sanguinis SK1058]
gi|422876018|ref|ZP_16922488.1| ribonuclease III [Streptococcus sanguinis SK1056]
gi|327463120|gb|EGF09441.1| ribonuclease III [Streptococcus sanguinis SK1]
gi|327474731|gb|EGF20136.1| ribonuclease III [Streptococcus sanguinis SK408]
gi|327490288|gb|EGF22076.1| ribonuclease III [Streptococcus sanguinis SK1058]
gi|332362454|gb|EGJ40254.1| ribonuclease III [Streptococcus sanguinis SK1056]
Length = 232
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H N+ R ++ H+ RL FLG VL+L E+ +YP+ + +
Sbjct: 19 ETLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPEGDLSKL 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L + + + I ++ + R+ + +F A GA+ L G
Sbjct: 78 RSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEA 137
Query: 282 VYRVLFEVF 290
V L++V
Sbjct: 138 VKSFLYQVM 146
>gi|422823206|ref|ZP_16871394.1| ribonuclease III [Streptococcus sanguinis SK405]
gi|422848274|ref|ZP_16894950.1| ribonuclease III [Streptococcus sanguinis SK115]
gi|422878402|ref|ZP_16924868.1| ribonuclease III [Streptococcus sanguinis SK1059]
gi|422928255|ref|ZP_16961197.1| ribonuclease III [Streptococcus sanguinis ATCC 29667]
gi|422931251|ref|ZP_16964182.1| ribonuclease III [Streptococcus sanguinis SK340]
gi|324993856|gb|EGC25775.1| ribonuclease III [Streptococcus sanguinis SK405]
gi|325690806|gb|EGD32807.1| ribonuclease III [Streptococcus sanguinis SK115]
gi|332367146|gb|EGJ44882.1| ribonuclease III [Streptococcus sanguinis SK1059]
gi|339617400|gb|EGQ22026.1| ribonuclease III [Streptococcus sanguinis ATCC 29667]
gi|339620433|gb|EGQ25003.1| ribonuclease III [Streptococcus sanguinis SK340]
Length = 232
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H N+ R ++ H+ RL FLG VL+L E+ +YP+ + +
Sbjct: 19 ETLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPEGDLSKL 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE-------REPPVKSVFWALFGAIY 274
++ +L + + FD+ +L R E R+ + +F A GA+
Sbjct: 78 RSMIVREESLAGFARDC-------QFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 275 LCFGFPEVYRVLFEVF 290
L G V L++V
Sbjct: 131 LDKGVEAVKSFLYQVM 146
>gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
Length = 237
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL LA H N+ H++ + RL FLG VLELA E RYP +
Sbjct: 22 LLLLALTHS-SYANEHPHIQEHNERLEFLGDAVLELAISEELYLRYPEAPEGSLTSLRSK 80
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
L+ L + + +F + +ER+ + V ++FGAI+L +
Sbjct: 81 LVSEPALAALGRQLEIAPALFLGRGEESQGGRERDAILCDVMESIFGAIFLDSDYDRAKT 140
Query: 285 VLFEVF 290
+ E++
Sbjct: 141 CILELY 146
>gi|218291547|ref|ZP_03495421.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
gi|258511329|ref|YP_003184763.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|218238642|gb|EED05867.1| Ribonuclease III [Alicyclobacillus acidocaldarius LAA1]
gi|257478055|gb|ACV58374.1| ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 241
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 164 TLLYLAFQHPFCERNKAR--HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
LL AF H RN+ R HV + RL FLG VLEL +F + YP+ +
Sbjct: 20 NLLKQAFTHA-SYRNEHRKLHVED-NERLEFLGDAVLELVVSDFLYRTYPKMPEGELTRM 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS-------VFWALFGAIY 274
++ +L ++ K S FD+ RL R E +S VF A GA+Y
Sbjct: 78 RAAIVCEASLVRFAKRLS-------FDQYIRLGRGEERSGGRSRPALLADVFEAFLGALY 130
Query: 275 LCFGFPEV 282
L G V
Sbjct: 131 LDQGLEAV 138
>gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC]
gi|385817880|ref|YP_005854270.1| ribonuclease III [Lactobacillus amylovorus GRL1118]
gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC]
gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL1118]
Length = 228
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAG---HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
+ LL AF H H AG + +L FLG VLELA + + YP+ + +
Sbjct: 21 EKLLEEAFTHSSYSN---EHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEGELT 77
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ ++ Q I + ++ + R+ ++ VF A GA+YL G
Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQKEIHLGNGEEKAGARSRKTLLEDVFEAFNGALYLDQGM 137
Query: 280 PEVYRVL 286
P V L
Sbjct: 138 PAVEHFL 144
>gi|125718368|ref|YP_001035501.1| ribonuclease III [Streptococcus sanguinis SK36]
gi|401681358|ref|ZP_10813258.1| ribonuclease III [Streptococcus sp. AS14]
gi|422826705|ref|ZP_16874884.1| ribonuclease III [Streptococcus sanguinis SK678]
gi|422847071|ref|ZP_16893754.1| ribonuclease III [Streptococcus sanguinis SK72]
gi|422851262|ref|ZP_16897932.1| ribonuclease III [Streptococcus sanguinis SK150]
gi|422882646|ref|ZP_16929102.1| ribonuclease III [Streptococcus sanguinis SK355]
gi|422884520|ref|ZP_16930968.1| ribonuclease III [Streptococcus sanguinis SK49]
gi|189043368|sp|A3CP46.1|RNC_STRSV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|125498285|gb|ABN44951.1| Ribonuclease III, putative [Streptococcus sanguinis SK36]
gi|324994823|gb|EGC26736.1| ribonuclease III [Streptococcus sanguinis SK678]
gi|325687264|gb|EGD29286.1| ribonuclease III [Streptococcus sanguinis SK72]
gi|325694850|gb|EGD36755.1| ribonuclease III [Streptococcus sanguinis SK150]
gi|332358679|gb|EGJ36502.1| ribonuclease III [Streptococcus sanguinis SK355]
gi|332358950|gb|EGJ36771.1| ribonuclease III [Streptococcus sanguinis SK49]
gi|400186128|gb|EJO20341.1| ribonuclease III [Streptococcus sp. AS14]
Length = 232
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H N+ R ++ H+ RL FLG VL+L E+ +YP+ + +
Sbjct: 19 ETLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPEGDLSKL 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE-------REPPVKSVFWALFGAIY 274
++ +L + + FD+ +L R E R+ + +F A GA+
Sbjct: 78 RSMIVREESLAGFARDC-------QFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 275 LCFGFPEVYRVLFEVF 290
L G V L++V
Sbjct: 131 LDKGVEAVKSFLYQVM 146
>gi|387792520|ref|YP_006257585.1| ribonuclease III [Solitalea canadensis DSM 3403]
gi|379655353|gb|AFD08409.1| ribonuclease III [Solitalea canadensis DSM 3403]
Length = 242
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
TL LAF+H ++ + RL FLG VL E ++YP + E
Sbjct: 33 TLYKLAFRHKSVAPQLKEGLKNSNERLEFLGDAVLGAVVGEMLFKKYPFRDEGFLTEMRS 92
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRK--EREPPVKSVFWALFGAIYLCFGFP 280
++ R +L + K + +L+ D R+I ++ + F AL GA+YL G+
Sbjct: 93 KIVNRNHLNQLAKKIGIGDLM---DYDTRMINNPIKQGSLMGDAFEALIGAVYLDKGYA 148
>gi|338210252|ref|YP_004654299.1| ribonuclease 3 [Runella slithyformis DSM 19594]
gi|336304065|gb|AEI47167.1| Ribonuclease 3 [Runella slithyformis DSM 19594]
Length = 248
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 168 LAFQHPFCER-NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLI 226
LAF+H + + R + RL FLG VL + E+ +++P + + E ++
Sbjct: 43 LAFRHTSASKETNIKGFRESNERLEFLGDSVLGMVIAEYLFKKFPYKDEGFLTEIRSRIV 102
Query: 227 GRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW----ALFGAIYLCFGF 279
R L + L LI FD ++ PP S++ AL GA+YL GF
Sbjct: 103 NRETLNGIARKIGLDRLI-EFDG-----NRKGMPPNSSMYGDALEALVGAVYLDKGF 153
>gi|422854630|ref|ZP_16901294.1| ribonuclease III [Streptococcus sanguinis SK160]
gi|325696125|gb|EGD38016.1| ribonuclease III [Streptococcus sanguinis SK160]
Length = 232
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H N+ R ++ H+ RL FLG VL+L E+ +YP+ + +
Sbjct: 19 ETLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPEGDLSKL 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L + + + I ++ + R+ + +F A GA+ L G
Sbjct: 78 RSMIVREESLAGFARDCQFDHFIKLGRGEEKSGGRNRDTILGDLFEAFLGALLLDKGVEA 137
Query: 282 VYRVLFEVF 290
V L++V
Sbjct: 138 VKSFLYQVM 146
>gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
Length = 232
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+LL AF H N+ R ++ H+ RL FLG VL+L E+ ++YP+ + +
Sbjct: 20 SLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRPEGDLTKLR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + I ++ +ERE + +F A GA+ L G V
Sbjct: 79 STIVREESLAGFSRDCQFDLFIKLGKGEEKSGGRERETILGDLFEAFLGALLLDKGLEIV 138
Query: 283 YRVLFEVF 290
+++V
Sbjct: 139 KDFIYQVM 146
>gi|392394753|ref|YP_006431355.1| ribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525831|gb|AFM01562.1| ribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
Length = 262
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 155 DDNPAKHFDTLL----YLAFQHP--FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQ 208
DD P + F T L YL F++P E N+ RL FLG +L+ E+
Sbjct: 45 DDPPNRLFTTALTHPSYL-FENPQSGLENNQ---------RLEFLGDAILDFVVAEYLYL 94
Query: 209 RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW- 267
YP + + ++ L + K L + + +++ P + + W
Sbjct: 95 SYPERPEGELTKMRAAVVNESTLARTAKKIRLGEELL-LGKGEQVSGGRERPSILADAWE 153
Query: 268 ALFGAIYLCFGFPEVYRVLFEVF 290
A+ GA+YL +GF E RV+ +
Sbjct: 154 AIVGAVYLQYGFQEARRVVLTLL 176
>gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2]
Length = 262
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 155 DDNPAKHFDTLL----YLAFQHP--FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQ 208
DD P + F T L YL F++P E N+ RL FLG +L+ E+
Sbjct: 45 DDPPNRLFTTALTHPSYL-FENPQSGLENNQ---------RLEFLGDAILDFVVAEYLYL 94
Query: 209 RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW- 267
YP + + ++ L + K L + + +++ P + + W
Sbjct: 95 SYPERPEGELTKMRAAVVNESTLARTAKKIRLGEELL-LGKGEQVSGGRERPSILADAWE 153
Query: 268 ALFGAIYLCFGFPEVYRVLF 287
A+ GA+YL +GF E RV+
Sbjct: 154 AIVGAVYLQYGFQEARRVVL 173
>gi|422859768|ref|ZP_16906412.1| ribonuclease III [Streptococcus sanguinis SK330]
gi|327470651|gb|EGF16107.1| ribonuclease III [Streptococcus sanguinis SK330]
Length = 232
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H N+ R ++ H+ RL FLG VL+L E+ +YP+ + +
Sbjct: 19 ETLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPEGDLSKL 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE-------REPPVKSVFWALFGAIY 274
++ +L + + FD+ +L R E R+ + +F A GA+
Sbjct: 78 RSMIVREESLAGFARDC-------QFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 275 LCFGFPEVYRVLFEVF 290
L G V L++V
Sbjct: 131 LDKGVEAVKSFLYQVM 146
>gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 233
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
+L AF H A+ + RL FLG VLEL +F YP + +
Sbjct: 21 ILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITSDFLFNTYPDKPEGQLTRMRAQ 80
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
L+ +L + L LI + + R+ V F A GAIYL GF V
Sbjct: 81 LVKEPSLALVARKYQLDQLIQLGKGEEASGGRFRDSIVSDAFEAFLGAIYLDQGFARVTE 140
Query: 285 VL 286
L
Sbjct: 141 FL 142
>gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
Length = 227
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 1/126 (0%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRE 220
H + LL AF H VR + +L FLG VLELA ++ + YP + +
Sbjct: 19 HNEKLLEEAFTHSSYANEHPEGVRD-YEKLEFLGDAVLELAVSDYLYRHYPNLNEGELTR 77
Query: 221 RVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFP 280
++ ++ Q+ I ++ + R+ ++ VF A GA+YL G
Sbjct: 78 MRSNIVRTEGFSEFAIECGFQDEINLGKGEEKAGARHRKTLLEDVFEAFNGALYLDQGMK 137
Query: 281 EVYRVL 286
V L
Sbjct: 138 AVTHFL 143
>gi|406989921|gb|EKE09630.1| hypothetical protein ACD_16C00130G0035 [uncultured bacterium]
Length = 223
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 189 RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFD 248
RL FLG VL L + +++P+++ + +R L+ + L K +LQ +
Sbjct: 38 RLEFLGDRVLGLVIASWLFKKFPKDAEGDLAKRFTNLVRKEALLKIASIINLQQFMLIKH 97
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
E +K E + AL GA+YL G EV R F
Sbjct: 98 ETSSSQKKRLETLLADGCEALIGALYLDGGL-EVARSFIHRF 138
>gi|333979683|ref|YP_004517628.1| ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823164|gb|AEG15827.1| Ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
Length = 243
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL LA H K + + RL FLG VLEL ++ + YP + +
Sbjct: 22 EDLLCLALTHSSYAYEKIFRGQENNQRLEFLGDAVLELVVSDYLYRTYPGHTEGELTRLR 81
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + L + ++ +R +ER + F AL GA+YL G
Sbjct: 82 AAIVCEPSLARTARELDLGSCLYMGRGEERSGGRERPSILADAFEALLGAVYLDQGLEMA 141
Query: 283 YRVLFE 288
+V +
Sbjct: 142 RKVALQ 147
>gi|121602768|ref|YP_988789.1| ribonuclease III [Bartonella bacilliformis KC583]
gi|421760594|ref|ZP_16197410.1| ribonuclease III [Bartonella bacilliformis INS]
gi|189043293|sp|A1US36.1|RNC_BARBK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|120614945|gb|ABM45546.1| ribonuclease III [Bartonella bacilliformis KC583]
gi|411175011|gb|EKS45038.1| ribonuclease III [Bartonella bacilliformis INS]
Length = 235
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL A H +R++ + + RL FLG VL L E Q +P+ S + R+
Sbjct: 20 EDLLKKALTHSSVQRSE----QGNYERLEFLGDRVLGLLVAEMLYQFFPQASEGELSVRL 75
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
GL+ + + L +++ EM L + V AL IYL G V
Sbjct: 76 NGLVNAQTCADIAREIGLPDMVHVGCEMKNLEGRRLANMHADVVEALIAVIYLDGGLKSV 135
>gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1]
gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1]
Length = 236
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 190 LCFLGQFVLELAFCEFFLQRYPRESPAPMRE-RVFGLIGRRNLPKWIKAASLQNLIFPFD 248
L FLG V+ L E ++R+P +S + + R F L+ +L K + +L ++
Sbjct: 46 LEFLGDAVIGLIVSEELIKRFPEKSEGELSQIRAF-LVSEPSLSKLARTINLGQFLYLGK 104
Query: 249 EMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRV 285
R +E++ + VF ++FGA+YL GF + +
Sbjct: 105 GEKRTGGREKDSILCDVFESVFGALYLDAGFEKAKEI 141
>gi|423074940|ref|ZP_17063660.1| ribonuclease III [Desulfitobacterium hafniense DP7]
gi|361854146|gb|EHL06251.1| ribonuclease III [Desulfitobacterium hafniense DP7]
Length = 262
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 155 DDNPAKHFDTLL----YLAFQHP--FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQ 208
D++P + F T L YL F++P E N+ RL FLG +L+ E+
Sbjct: 45 DESPNRLFTTALTHPSYL-FENPQSGLENNQ---------RLEFLGDAILDFVVAEYLYL 94
Query: 209 RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW- 267
YP + + ++ L + K L + + +++ P + + W
Sbjct: 95 SYPERPEGELTKMRAAVVNESTLARTAKKIRLGEELL-LGKGEQVSGGRERPSILADAWE 153
Query: 268 ALFGAIYLCFGFPEVYRVLF 287
A+ GA+YL +GF E RV+
Sbjct: 154 AIVGAVYLQYGFQEARRVVL 173
>gi|154249761|ref|YP_001410586.1| ribonuclease III [Fervidobacterium nodosum Rt17-B1]
gi|154153697|gb|ABS60929.1| Ribonuclease III [Fervidobacterium nodosum Rt17-B1]
Length = 239
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 13/122 (10%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V+EL C+ + YP S M + + L + L IF
Sbjct: 52 NERLEFLGDAVVELVVCDILYRNYPDSSEGDMAKVKGAVASEEVLTELANEIELGKYIFL 111
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKECQPKLRRQ 306
++ ++R + F AL AIYL V + VFG KL+R+
Sbjct: 112 GKGEEKTGGRKRSSILADAFEALCAAIYLDGNLESVVK----VFG---------EKLKRE 158
Query: 307 LE 308
+E
Sbjct: 159 IE 160
>gi|393201759|ref|YP_006463601.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
gi|406664636|ref|ZP_11072411.1| Ribonuclease 3 [Bacillus isronensis B3W22]
gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
gi|405387484|gb|EKB46908.1| Ribonuclease 3 [Bacillus isronensis B3W22]
Length = 253
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 161 HFDT--LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF LLY AF H R + + RL FLG VLEL+ ++ +++P S +
Sbjct: 33 HFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKFPHMSEGEL 92
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L + + + + +ER + VF + GA+YL G
Sbjct: 93 TKLRASIVCEPSLVVFANELNFGQFVLLGKGEELTGGRERPALLADVFESFVGALYLDQG 152
Query: 279 FPEVY----RVLF 287
V RV+F
Sbjct: 153 LEVVVAFLERVVF 165
>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
Length = 222
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRN---LPKWIKAASLQ 241
A + RL FLG V++L ++ ++ R S + + L+ ++ L K++ L
Sbjct: 31 ANNERLEFLGDAVMDLVIGDYLFHKFSRLSEGDLSKLRAALVNEKSFAELAKYLNLGQLI 90
Query: 242 NLIFPFDEMD--RLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
N I P +E + RL + + F AL GAIYL GF V + F
Sbjct: 91 N-ISPAEEHNGGRL----KASILSDAFEALMGAIYLESGFDAVRAASLKAF 136
>gi|422858043|ref|ZP_16904693.1| ribonuclease III [Streptococcus sanguinis SK1057]
gi|327461014|gb|EGF07347.1| ribonuclease III [Streptococcus sanguinis SK1057]
Length = 232
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H N+ R ++ H+ RL FLG VL+L E+ +YP+ + +
Sbjct: 19 ETLLETAFTHT-SYANEHRLLKISHNERLEFLGDAVLQLIISEYLYTKYPKRPEGDLSKL 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKE-------REPPVKSVFWALFGAIY 274
++ +L + + FD+ +L R E R+ + +F A GA+
Sbjct: 78 RSMIVREESLAGFARDC-------QFDQFIKLGRGEEKSGGRNRDTILGDLFEAFLGALL 130
Query: 275 LCFGFPEVYRVLFEVF 290
L G V L++V
Sbjct: 131 LDKGVEAVKSFLYQVM 146
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + + RL FLG VLEL ++ +++P+ S + +
Sbjct: 17 EKLLMQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYLFEQFPQMSEGELTKLR 76
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + A S +L+ + + R + VF A GA+YL G V
Sbjct: 77 AAIVCEPSLVTFAHALSFGDLVLLGKGEELTGGRMRPSLLADVFEAFIGALYLDQGMEAV 136
Query: 283 YRVL 286
+ L
Sbjct: 137 VQFL 140
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPEMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51]
gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 262
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 155 DDNPAKHFDTLL----YLAFQHP--FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQ 208
D++P + F T L YL F++P E N+ RL FLG +L+ E+
Sbjct: 45 DESPNRLFTTALTHPSYL-FENPQSGLENNQ---------RLEFLGDAILDFVVAEYLYL 94
Query: 209 RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW- 267
YP + + ++ L + K L + + +++ P + + W
Sbjct: 95 SYPERPEGELTKMRAAVVNESTLARTAKKIRLGEELL-LGKGEQVSGGRERPSILADAWE 153
Query: 268 ALFGAIYLCFGFPEVYRVLF 287
A+ GA+YL +GF E RV+
Sbjct: 154 AIVGAVYLQYGFQEARRVVL 173
>gi|365174613|ref|ZP_09362054.1| ribonuclease III [Synergistes sp. 3_1_syn1]
gi|363614536|gb|EHL66027.1| ribonuclease III [Synergistes sp. 3_1_syn1]
Length = 230
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 53/139 (38%), Gaps = 22/139 (15%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VLEL + YP + ++ + +L W L+NLI
Sbjct: 46 NERLEFLGDAVLELVTSDKLFSSYPDYDEGQLTRLRARIVCKNSLSLWASEMGLKNLI-- 103
Query: 247 FDEMDRLIRK-EREPPVKSV----FWALFGAIYLCFGFPEVYRVLFEVFGMDPE------ 295
R+ + + P SV ALFGAI+L GFP + PE
Sbjct: 104 -----RIGKSLVKSGPTDSVAADCVEALFGAIFLDGGFPNAVEAVSNFLDTKPEISGAAV 158
Query: 296 ----DKECQPKLRRQLEDV 310
E Q +RQ DV
Sbjct: 159 IKDPKTELQEYFQRQGMDV 177
>gi|398310689|ref|ZP_10514163.1| ribonuclease III [Bacillus mojavensis RO-H-1]
Length = 249
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEV 282
V
Sbjct: 150 LEPV 153
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ +L ++ +A + ++ + R + VF + GA+YL G +V +
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVK 139
Query: 285 VL 286
L
Sbjct: 140 FL 141
>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642]
gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY]
gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5]
gi|384175334|ref|YP_005556719.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|386758316|ref|YP_006231532.1| ribonuclease III [Bacillus sp. JS]
gi|402775838|ref|YP_006629782.1| ribonuclease III [Bacillus subtilis QB928]
gi|418033261|ref|ZP_12671738.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|428279187|ref|YP_005560922.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
gi|430758984|ref|YP_007209705.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
gi|443632739|ref|ZP_21116918.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|449094285|ref|YP_007426776.1| ribonuclease III [Bacillus subtilis XF-1]
gi|452914014|ref|ZP_21962641.1| ribonuclease III [Bacillus subtilis MB73/2]
gi|7531275|sp|P51833.2|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5]
gi|349594558|gb|AEP90745.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|351469409|gb|EHA29585.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|384931598|gb|AFI28276.1| ribonuclease III [Bacillus sp. JS]
gi|402481020|gb|AFQ57529.1| Ribonuclease III [Bacillus subtilis QB928]
gi|407958999|dbj|BAM52239.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|407964576|dbj|BAM57815.1| ribonuclease III [Bacillus subtilis BEST7003]
gi|430023504|gb|AGA24110.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
gi|443347562|gb|ELS61620.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|449028200|gb|AGE63439.1| ribonuclease III [Bacillus subtilis XF-1]
gi|452116434|gb|EME06829.1| ribonuclease III [Bacillus subtilis MB73/2]
Length = 249
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEV 282
V
Sbjct: 150 LEPV 153
>gi|406669308|ref|ZP_11076587.1| ribonuclease III [Facklamia ignava CCUG 37419]
gi|405583821|gb|EKB57752.1| ribonuclease III [Facklamia ignava CCUG 37419]
Length = 228
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYP--------RESPAPMRE 220
A QH R A + RL FLG VLE+ EF Q+YP R +RE
Sbjct: 25 AMQHTSFVNEHRRRKLASNERLEFLGDAVLEIIVSEFLYQQYPNLAEGELSRMRAQLVRE 84
Query: 221 RVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
+ R+ NLP ++K E+ + ER+ + AL GA+YL G
Sbjct: 85 PSLARLARQLNLPDYLKLGR--------GEL-KSGGLERDSILSDALEALLGALYLDQGL 135
Query: 280 PEV----YRVLFE--VFGMDPEDKECQPKLRRQLEDVDYVSVEF 317
V YR L + V + +K+ + L+ +L+ V +E+
Sbjct: 136 EVVRDFLYRELLKDHVNWLKLINKDYKTLLQERLQQQGAVLIEY 179
>gi|395242485|ref|ZP_10419482.1| Ribonuclease III [Lactobacillus pasteurii CRBIP 24.76]
gi|394480217|emb|CCI85722.1| Ribonuclease III [Lactobacillus pasteurii CRBIP 24.76]
Length = 227
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
A +HP R+ + +L FLG VLELA ++ + YP+ + + ++
Sbjct: 34 ANEHPEGSRD--------YEKLEFLGDAVLELAISDYLYRHYPKLNEGELTRMRSNIVRT 85
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
++ Q+ I ++ + R+ ++ VF A GA++L G P V + L
Sbjct: 86 EGFSEFAIECGFQDQINLGKGEEKAGSRNRKTLLEDVFEAFNGALFLDQGLPAVQKFL 143
>gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM]
gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
ATCC 4796]
gi|75432899|sp|Q5FJJ7.1|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
NCFM]
gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
ATCC 4796]
Length = 228
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ +L FLG VLELA + + YP+ + + ++ ++ Q I
Sbjct: 45 YEKLEFLGDAVLELAVSNYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHL 104
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
+ ++ + R+ ++ VF A GA++L G P V R L
Sbjct: 105 GNGEEKAGARNRKTLLEDVFEAFNGALFLDQGMPAVERFL 144
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + RL FLG VLEL +F ++YP + + +
Sbjct: 33 EKLLKQAFTHSSYVNEHRRKPFEDNERLEFLGDAVLELTVSQFLFKKYPMMTEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + LI + +ER + VF A GA+YL G +V
Sbjct: 93 AAIVCEPSLVAFANELEFGKLILLGKGEEMTGGRERPALLADVFEAYIGALYLDQGIEKV 152
Query: 283 YRVLFEV 289
L +V
Sbjct: 153 IEFLEKV 159
>gi|350265905|ref|YP_004877212.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349598792|gb|AEP86580.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 249
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEV 282
V
Sbjct: 150 LEPV 153
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
Length = 249
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEV 282
V
Sbjct: 150 LEPV 153
>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
Length = 232
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 181 RHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASL 240
RH+ + RL FLG VLEL R+PR + L+ L + ++ +L
Sbjct: 32 RHMEH-NERLEFLGDAVLELCISNVLFFRFPRAPEGHLTRLRAALVSEPTLARLARSLTL 90
Query: 241 QNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
+ IF + ++R+ + A+ GA+YL G+ + + +F
Sbjct: 91 GDYIFLGRGEELQGGRDRDSVLADTLEAILGAVYLDSGYDGAFECIAALF 140
>gi|452852629|ref|YP_007494313.1| Ribonuclease 3 [Desulfovibrio piezophilus]
gi|451896283|emb|CCH49162.1| Ribonuclease 3 [Desulfovibrio piezophilus]
Length = 233
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244
A + RL FLG VLEL E +RYP + L+ ++L + L +
Sbjct: 37 ADNERLEFLGDAVLELCISEEGFKRYPCAPEGQLTRIRSQLVKEKSLASLARELQLHQYV 96
Query: 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF-------GMDPEDK 297
+ ++R+ + F AL GA++L GF + + +F M PE K
Sbjct: 97 RLGKGEEIQGGRDRDALLADTFEALLGAVFLDGGFDAAKKTILLIFENEWPERAMLPETK 156
Query: 298 ECQPKLR 304
+ + +L+
Sbjct: 157 DYKSRLQ 163
>gi|213963479|ref|ZP_03391733.1| ribonuclease III [Capnocytophaga sputigena Capno]
gi|213953887|gb|EEB65215.1| ribonuclease III [Capnocytophaga sputigena Capno]
Length = 252
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
AF HP + KA R + RL FLG +L ++ P + + + ++ R
Sbjct: 43 AFTHPSYQFQKA--TRKSYERLEFLGDAILGAVIADYIFTNAPEQDEGYLTKMRSKIVER 100
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
RNL + K L F R+ ++F AL GAIYL G+ +R +
Sbjct: 101 RNLNQLGKDMGL----LDFLRTKLTPRQLGNNITGNLFEALIGAIYLDRGYKACFRFI 154
>gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
16841]
gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
16841]
Length = 230
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 12/182 (6%)
Query: 147 LEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFF 206
LE D++G + + LL A H K + + RL FLG VLE+ +F
Sbjct: 5 LELQDKIGYEFKQ---EKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFL 61
Query: 207 LQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVF 266
+ YP +S + + L+ L + L +F + + R +
Sbjct: 62 YKAYPDKSEGDLTKLRASLVCEPTLAICTREMELGKYLFLGKGENLTGGRNRNSILSDAL 121
Query: 267 WALFGAIYLCFGFPEVYRVLFEVFGMDPEDK----ECQPKLRRQL-----EDVDYVSVEF 317
A+ GAIYL GF + + D E K +C+ L+ + E+++Y +
Sbjct: 122 EAVIGAIYLDGGFEHAKTFIHKFILTDIEHKKLFYDCKTSLQEVVQGHYEEELNYRLISE 181
Query: 318 EG 319
EG
Sbjct: 182 EG 183
>gi|452974503|gb|EME74323.1| ribonuclease III [Bacillus sonorensis L12]
Length = 249
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LLY AF H + + RL FLG VLEL +F +YP S + +
Sbjct: 34 EKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYAKYPAMSEGDLTKLR 93
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L S L+ + ++R + VF A GA+YL G V
Sbjct: 94 AAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLDSV 153
Query: 283 YRVL 286
L
Sbjct: 154 VAFL 157
>gi|218247605|ref|YP_002372976.1| Ribonuclease III [Cyanothece sp. PCC 8801]
gi|257061062|ref|YP_003138950.1| ribonuclease III [Cyanothece sp. PCC 8802]
gi|218168083|gb|ACK66820.1| Ribonuclease III [Cyanothece sp. PCC 8801]
gi|256591228|gb|ACV02115.1| ribonuclease III [Cyanothece sp. PCC 8802]
Length = 236
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 153 LGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPR 212
L + +P +F L LA HP + K + +L FLG V+ LA E L+ YP
Sbjct: 21 LSEQSPVNYF--WLDLALTHPTISQEK------NYQQLEFLGDSVIRLAAAELLLETYPN 72
Query: 213 ESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEM--DRLIRKEREPPVKSVFWALF 270
++ R L + + +L++ + D D++ R R + F A+
Sbjct: 73 APVGEFAALRSMMVSDRTLAELADSFTLESYLLVSDSAAKDKVGRVSR---LADAFEAVL 129
Query: 271 GAIYLCFGFPEVYR 284
GA+YL E+ R
Sbjct: 130 GALYLSTHTMELIR 143
>gi|110633304|ref|YP_673512.1| ribonuclease III [Chelativorans sp. BNC1]
gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1]
Length = 238
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H + AR + RL FLG VL LA E + YP S + R+
Sbjct: 28 LLERALTH-----SSARGKGGDYQRLEFLGDRVLGLAVAEMLYEAYPDASEGELSLRLNS 82
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
L+ L + + L LI ++ L +++ V AL IYL G
Sbjct: 83 LVNAETLAEITEELGLDTLIRTGSDLKALAMRKQVNLRADVLEALIAVIYLQDGL 137
>gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
gi|404489084|ref|YP_006713190.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385589|sp|Q65JQ5.1|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52348075|gb|AAU40709.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
Length = 249
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LLY AF H + + RL FLG VLEL +F +YP S + +
Sbjct: 34 EKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYAKYPAMSEGDLTKLR 93
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L S L+ + ++R + VF A GA+YL G V
Sbjct: 94 AAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEAV 153
Query: 283 YRVL 286
L
Sbjct: 154 VTFL 157
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
Length = 249
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 51/126 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL +F ++YP S + +
Sbjct: 34 EKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLYKKYPTMSEGELTKLR 93
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + L+ + +ER + VF A GA+YL G V
Sbjct: 94 AAIVCEPSLVTFANELKFGELVLLGKGEELTGGRERPALLADVFEAFIGALYLDQGLEPV 153
Query: 283 YRVLFE 288
+L E
Sbjct: 154 LSILEE 159
>gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
Length = 228
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ +L FLG VLELA ++ + YP+ + + ++ ++ Q I
Sbjct: 45 YEKLEFLGDAVLELAVSDYLYRHYPKLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHL 104
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
+ ++ ++R+ ++ VF A GA++L G P V L
Sbjct: 105 GNGEEKAGARKRKTLLEDVFEAFNGALFLDQGMPAVQHFL 144
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|423682137|ref|ZP_17656976.1| ribonuclease III [Bacillus licheniformis WX-02]
gi|383438911|gb|EID46686.1| ribonuclease III [Bacillus licheniformis WX-02]
Length = 253
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LLY AF H + + RL FLG VLEL +F +YP S + +
Sbjct: 38 EKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYAKYPAMSEGDLTKLR 97
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L S L+ + ++R + VF A GA+YL G V
Sbjct: 98 AAIVCEPSLVSLAHELSFGELVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEAV 157
Query: 283 YRVL 286
L
Sbjct: 158 VTFL 161
>gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4]
gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4]
Length = 263
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H + + RL FLG VLELA +F +++ S M +
Sbjct: 51 LLIQAFTHSSYVNEHRIYSFQDNERLEFLGDAVLELAVSQFLYKKFNSMSEGEMTKLRAS 110
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ +L ++ + L+ + + R + VF + GA+YL G VY+
Sbjct: 111 IVCEPSLARFAEELEFGELVLLGKGEEMTGGRNRPALLADVFESFIGALYLDQGLEAVYK 170
Query: 285 VL 286
L
Sbjct: 171 FL 172
>gi|345859715|ref|ZP_08812049.1| ribonuclease III [Desulfosporosinus sp. OT]
gi|344327172|gb|EGW38616.1| ribonuclease III [Desulfosporosinus sp. OT]
Length = 261
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 20/172 (11%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ L A HP + + + RL FLG +L+ E+ YP + +
Sbjct: 48 NRLFSTALTHPSYVFENPQFGKENNQRLEFLGDAILDFVIAEYLYLSYPDRPEGELTKMR 107
Query: 223 FGLIGRRNLPKWIKAASL-QNLIFPFDEMDRLIRKERE-PPVKSVFW-ALFGAIYLCFGF 279
++ L L Q L+ E + RE P + + W A+ GAIYL +G
Sbjct: 108 AAVVNETTLAHKAHEIELGQELLLGKGEQ---VSGGRERPSILADAWEAVVGAIYLQYGL 164
Query: 280 PEVYRVLFEVFGMDPEDKEC------------QPKLRRQLEDVDYVSVEFEG 319
E RV+ E+ + P E Q K +R+ ++V+Y + EG
Sbjct: 165 QEARRVILEL--LKPSINEVAEGNYGDYKTVLQEKAQREEKEVNYQILAEEG 214
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
Length = 259
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + RL FLG VLEL +F ++YP S + +
Sbjct: 34 EKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQFLYKKYPMMSEGELTKLR 93
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + L+ + +ER + VF A GA+YL G V
Sbjct: 94 AAVVCEPSLVTFANELEFGKLVLLGKGEEMTGGRERPALLADVFEAFIGALYLEKGIDTV 153
Query: 283 YRVL 286
L
Sbjct: 154 IGFL 157
>gi|429752220|ref|ZP_19285090.1| ribonuclease III [Capnocytophaga sp. oral taxon 326 str. F0382]
gi|429177374|gb|EKY18702.1| ribonuclease III [Capnocytophaga sp. oral taxon 326 str. F0382]
Length = 252
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
AF HP + KA R + RL FLG +L ++ P + + + ++ R
Sbjct: 43 AFTHPSYQFQKA--TRKSYERLEFLGDAILGAVIADYIFTNAPEQDEGYLTKMRSKIVER 100
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
RNL + K L F R+ ++F AL GAIYL G+ +R +
Sbjct: 101 RNLNQLGKDMGL----LDFLRTKLTPRQLGNNITGNLFEALIGAIYLDRGYKACFRFI 154
>gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis]
Length = 266
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 161 HF--DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218
HF + LLY AF H + + RL FLG VLEL F +YP S +
Sbjct: 30 HFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFPKYPAMSEGDL 89
Query: 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278
+ ++ +L S +L+ + ++R + VF A GA+YL G
Sbjct: 90 TKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQG 149
Query: 279 FPEV 282
V
Sbjct: 150 LEPV 153
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H R + RL FLG VLEL +F +YP S + +
Sbjct: 33 EKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLYLKYPMMSEGELTKLR 92
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + A S +L+ + + R + VF A GA+YL G V
Sbjct: 93 AAVVCEPSLVSFAHALSFGSLVLLGKGEEMTGGRTRPALLADVFEAFIGALYLDKGLDTV 152
Query: 283 YRVLFEV 289
L +V
Sbjct: 153 VGFLEKV 159
>gi|222100439|ref|YP_002535007.1| ribonuclease III [Thermotoga neapolitana DSM 4359]
gi|254807907|sp|B9K9K8.1|RNC_THENN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|221572829|gb|ACM23641.1| Ribonuclease 3 [Thermotoga neapolitana DSM 4359]
Length = 240
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 163 DTLLYLAFQHPFC---ERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYP-------- 211
+ LL+ A H ++ R + +L FLG VLEL CE ++YP
Sbjct: 23 EELLFRALCHSSYANEQKQAGREDVESNEKLEFLGDAVLELFVCEILYRKYPEAEVGDLA 82
Query: 212 RESPAPMRERVFGLIGRR-NLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALF 270
R A E V + RR L K+ +F ++ +ER+ + F AL
Sbjct: 83 RVKSAVASEEVLARVSRRLELGKY---------LFLGKGEEKTGGRERDSILADAFEALL 133
Query: 271 GAIYLCFGFPEVYRVLFE 288
A+YL G+ ++ + LFE
Sbjct: 134 AALYLDQGYQKI-KDLFE 150
>gi|116511619|ref|YP_808835.1| ribonuclease III [Lactococcus lactis subsp. cremoris SK11]
gi|385838719|ref|YP_005876349.1| Ribonuclease III [Lactococcus lactis subsp. cremoris A76]
gi|122940253|sp|Q030F9.1|RNC_LACLS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116107273|gb|ABJ72413.1| RNAse III [Lactococcus lactis subsp. cremoris SK11]
gi|358749947|gb|AEU40926.1| Ribonuclease III [Lactococcus lactis subsp. cremoris A76]
Length = 231
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+ LL AF H F + + A + RL FLG L L ++ + YP + + +
Sbjct: 19 EDLLKTAFTHSSFTNEERLPKI-ANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKM 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L + ++ + +++ ++RE ++++F A GA+++ G E
Sbjct: 78 RSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDE 137
Query: 282 VYRVLFEV 289
V + + V
Sbjct: 138 VRKFIQHV 145
>gi|436834214|ref|YP_007319430.1| ribonuclease III [Fibrella aestuarina BUZ 2]
gi|384065627|emb|CCG98837.1| ribonuclease III [Fibrella aestuarina BUZ 2]
Length = 251
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 168 LAFQHPFCER-NKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLI 226
LA +H + K + R + RL +LG VL + E+ ++YP + + E ++
Sbjct: 45 LAVRHTSAAKETKIKGFRESNERLEYLGDAVLGMVIAEYLFKKYPFKDEGFLTEIRSRIV 104
Query: 227 GRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
R +L + L +LI +D + R AL GA+YL GF
Sbjct: 105 NRESLNGISRKIGLDHLI-EYDGQRGRLMPARTSMYGDALEALVGAVYLDKGF 156
>gi|326693698|ref|ZP_08230703.1| ribonuclease III [Leuconostoc argentinum KCTC 3773]
Length = 240
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++++ E+ +RYP + E ++ R+ + + L +
Sbjct: 52 YQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRL 111
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
+ +ER+ ++ ++ A GA+YL G V L
Sbjct: 112 GKGEEMSGARERDSLLEDIWEAFIGALYLDQGADAVQEFL 151
>gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|122973320|sp|Q17XJ6.1|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba]
Length = 234
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 141 QALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLEL 200
+ALGYS + KH LL A H C+ + + RL FLG VL L
Sbjct: 18 KALGYSFKD----------KH---LLEQALTHKSCK------LALNNERLEFLGDAVLGL 58
Query: 201 AFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREP 260
E ++ + + + ++ + K +A SLQ+ + + +E+
Sbjct: 59 VIGELLYHKFYQYDEGKLSKLRASIVSAQGFTKLARAISLQDYLRVSSSEETSKGREKPS 118
Query: 261 PVKSVFWALFGAIYLCFGFPEVYRVL 286
+ S F AL +YL G +V +++
Sbjct: 119 ILSSAFEALMAGVYLEAGLDKVRKIM 144
>gi|116618659|ref|YP_819030.1| ribonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|381337037|ref|YP_005174812.1| ribonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
J18]
gi|122271141|sp|Q03VW5.1|RNC_LEUMM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116097506|gb|ABJ62657.1| RNAse III [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|356645003|gb|AET30846.1| ribonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
J18]
Length = 236
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V+++ E+ +RYP + E ++ R+ + + L I
Sbjct: 45 YQRLEFLGDSVMQMIVAEYLFKRYPDWHEGQLTEMRIAMVQTRSFAHFSRMVHLNEGIRL 104
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR-----VLFEVFGMDPEDK--EC 299
+ ++R+ ++ ++ A GA+YL G +V R LF D D+ +
Sbjct: 105 GKGEEMSGARDRDSLLEDIWEAFIGALYLDQG-ADVVRQFLNQTLFAAIDTDFFDRFIDF 163
Query: 300 QPKLRRQLEDVDYVSVEFEGNK 321
+ +L+ +L+ V ++++ K
Sbjct: 164 KSRLQERLQTKGSVDIDYQTEK 185
>gi|15672784|ref|NP_266958.1| ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|385830346|ref|YP_005868159.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|13878708|sp|Q9CHD0.1|RNC_LACLA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|12723723|gb|AAK04900.1|AE006313_7 ribonuclease III [Lactococcus lactis subsp. lactis Il1403]
gi|326406354|gb|ADZ63425.1| ribonuclease III [Lactococcus lactis subsp. lactis CV56]
gi|374672851|dbj|BAL50742.1| ribonuclease III [Lactococcus lactis subsp. lactis IO-1]
Length = 231
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+ LL AF H F + + A + RL FLG L L ++ + YP + + +
Sbjct: 19 EDLLKTAFTHSSFTNEERLPKI-ANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKM 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L + ++ + +++ ++RE ++++F A GA+++ G E
Sbjct: 78 RSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDE 137
Query: 282 VYRVLFEV 289
V + + V
Sbjct: 138 VRKFIQHV 145
>gi|332685822|ref|YP_004455596.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
gi|379728091|ref|YP_005320276.1| ribonuclease III [Melissococcus plutonius DAT561]
gi|332369831|dbj|BAK20787.1| ribonuclease III [Melissococcus plutonius ATCC 35311]
gi|376318994|dbj|BAL62781.1| ribonuclease III [Melissococcus plutonius DAT561]
Length = 230
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 161 HFDTLLYLAFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMR 219
H LL AF H N+ R+++ + + R+ FLG VLEL ++ Q+Y +
Sbjct: 18 HDVNLLEQAFTHS-SYVNEHRYLKLSDNERIEFLGDAVLELIISQYLYQKYQNLPEGKLT 76
Query: 220 ERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
+ ++ +L K+ K I + + +ER + +F A GA+YL G
Sbjct: 77 KMRAAIVREDSLAKFAKECQFDQYILLGNGEENSGGRERSALLCDLFEAFLGALYLDQGI 136
Query: 280 PEVYRVLFEVF 290
V + E+
Sbjct: 137 ETVKYFISEII 147
>gi|407451687|ref|YP_006723411.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-CH-1]
gi|403312671|gb|AFR35512.1| dsRNA-specific ribonuclease [Riemerella anatipestifer RA-CH-1]
Length = 247
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 170 FQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRR 229
+Q F ++ + + + RL FLG VL + ++YP+ES + + ++ R+
Sbjct: 44 YQEAFSLKSTSSQLN--YDRLEFLGDAVLGSIVSYYLYRQYPQESEGFLTQMKSKIVNRK 101
Query: 230 NLPKWIKAASLQNLI------FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
NL + + +L +L+ F D L+ AL GAIY+ FG+ +
Sbjct: 102 NLNQIGEKLNLTSLVLKNGSKFGADLSGNLLE------------ALVGAIYMDFGYDKCQ 149
Query: 284 RVLF 287
+V+
Sbjct: 150 KVVL 153
>gi|407717946|ref|YP_006795351.1| ribonuclease III [Leuconostoc carnosum JB16]
gi|407241702|gb|AFT81352.1| ribonuclease III [Leuconostoc carnosum JB16]
Length = 233
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++++ E+ +RYP + E ++ R+ + + L I
Sbjct: 45 YQRLEFLGDSVMQVSVAEYLFKRYPNWHEGQLTEMRIAMVQTRSFAHFARQVRLNEAIRL 104
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR----VLFEVFGMDPEDK--ECQ 300
+ ++R+ ++ ++ A GA+YL V R LF D D+ + +
Sbjct: 105 GKGEEMSGARDRDSLLEDIWEAFIGALYLDQDADVVRRFLDKTLFAAIDTDFFDRFIDFK 164
Query: 301 PKLRRQLEDVDYVSVEF 317
+L+ +L++ V +++
Sbjct: 165 SRLQEKLQENGSVDIDY 181
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H + + RL FLG VLEL ++ Q+YP + + +
Sbjct: 20 LLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLFQKYPNLAEGQLTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ +L ++ + I + ++ + R + VF + GA+YL G V R
Sbjct: 80 IVCEPSLVEFAENIHFSKYIRLGNGEEKAGGRTRPALLADVFESFIGALYLDNGLKNVIR 139
Query: 285 VLFEVF 290
L V
Sbjct: 140 FLERVI 145
>gi|335040133|ref|ZP_08533269.1| Ribonuclease 3 [Caldalkalibacillus thermarum TA2.A1]
gi|334179958|gb|EGL82587.1| Ribonuclease 3 [Caldalkalibacillus thermarum TA2.A1]
Length = 234
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+TLL AF H + +K + ++ + RL FLG VLEL ++ + + S M +
Sbjct: 21 ETLLIQAFTHSSYVNEHKDKALKD-NERLEFLGDAVLELTVSQYLYKHFQTMSEGEMTKL 79
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L K+ LI + +ER + VF A GA+YL G
Sbjct: 80 RAAIVCEPSLVKFAHELEFGKLIRLGKGEEIAGGRERPALLADVFEAFIGALYLDQGLEA 139
Query: 282 VYRVL 286
V R L
Sbjct: 140 VDRFL 144
>gi|418039238|ref|ZP_12677544.1| Ribonuclease III [Lactococcus lactis subsp. cremoris CNCM I-1631]
gi|354692354|gb|EHE92184.1| Ribonuclease III [Lactococcus lactis subsp. cremoris CNCM I-1631]
Length = 236
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+ LL AF H F + + A + RL FLG L L ++ + YP + + +
Sbjct: 24 EDLLKTAFTHSSFTNEERLPKI-ANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKM 82
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L + ++ + +++ ++RE ++++F A GA+++ G E
Sbjct: 83 RSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDE 142
Query: 282 VYRVLFEV 289
V + + V
Sbjct: 143 VRKFIQHV 150
>gi|300770264|ref|ZP_07080143.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
gi|300762740|gb|EFK59557.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
Length = 229
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
L +AF+H + + RL FLG +L E ++YP + + E
Sbjct: 17 LYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKYPYKDEGFLTEMRSK 76
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIR--KEREPPVKSVFWALFGAIYLCFGFP 280
++ R NL + + L LI +D R+I ++ + F AL GA+YL G+
Sbjct: 77 IVSRANLNQLSRKLGLNELI-QYDA--RMISFPNKQGSLLGDAFEALVGAVYLDKGYT 131
>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
gi|189043328|sp|A6Q1H0.1|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
Length = 226
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG VL+L E+ +++P+ + + + L+ K + + IF
Sbjct: 36 NERLEFLGDAVLDLVVGEYLFKKFPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYIFI 95
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
+ + + + + F A+ GAIYL G +V
Sbjct: 96 SQAEENNQGRTKPSLLSNAFEAVMGAIYLEKGLEKV 131
>gi|227538735|ref|ZP_03968784.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
gi|227241244|gb|EEI91259.1| ribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
Length = 229
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
L +AF+H + + RL FLG +L E ++YP + + E
Sbjct: 17 LYQMAFRHKSVATAIKEGAKNSNERLEFLGDAILGSVVAELLFKKYPYKDEGFLTEMRSK 76
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIR--KEREPPVKSVFWALFGAIYLCFGFP 280
++ R NL + + L LI +D R+I ++ + F AL GA+YL G+
Sbjct: 77 IVSRANLNQLSRKLGLNELI-QYDA--RMISFPNKQGSLLGDAFEALVGAVYLDKGYA 131
>gi|343083248|ref|YP_004772543.1| ribonuclease 3 [Cyclobacterium marinum DSM 745]
gi|342351782|gb|AEL24312.1| Ribonuclease 3 [Cyclobacterium marinum DSM 745]
Length = 247
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
+L LAF+H + V+ + RL +LG VL EF Q++P + E
Sbjct: 37 SLYRLAFRHVSASKEIKAGVKISNERLEYLGDAVLGTIVAEFLFQKFPYRDEGFLTETRS 96
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
++ R +L + + L ++ EM + + AL GAIYL G+
Sbjct: 97 RIVNRESLNQVGQKIGLPKIVES--EMGNKVPYSFKSLYGDTLEALIGAIYLDRGY 150
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL + +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A I ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAIHFSKYIRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|387907302|ref|YP_006337638.1| ribonuclease III [Blattabacterium sp. (Blaberus giganteus)]
gi|387582195|gb|AFJ90973.1| ribonuclease III [Blattabacterium sp. (Blaberus giganteus)]
Length = 243
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 169 AFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGR 228
F + F +RN ++ RL FLG VL F +R+P + + + ++ R
Sbjct: 38 VFIYSFYKRNFNQNYYLNFQRLEFLGDAVLNSIISYFLCKRFPEKKEGELTQIRSKIVCR 97
Query: 229 RNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
RNL + K +++++ F + + + ++ AL G IY G+ E
Sbjct: 98 RNLNEISKKLTIEDIFFDKSMIS-------DNTLGNILEALIGFIYFEVGYQE 143
>gi|417315456|ref|ZP_12102132.1| ribonuclease III [Listeria monocytogenes J1816]
gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes J1816]
Length = 222
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL + +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|430848263|ref|ZP_19466089.1| ribonuclease 3 [Enterococcus faecium E1133]
gi|430535606|gb|ELA76006.1| ribonuclease 3 [Enterococcus faecium E1133]
Length = 228
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 157 NPAKHFDTLLYLAFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215
N H LL AF H N+ R+++ + + RL FLG VLEL ++ + YP
Sbjct: 14 NIVFHDLNLLEQAFTHS-SYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPE 72
Query: 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
+ + ++ +L K+ K + + + R + +F A GA+YL
Sbjct: 73 GKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLGALYL 132
Query: 276 CFGFPEVYRVLFEVF------GMDPEDKECQPKLRRQLEDVDYVSVEF 317
GF + + +V G + + + KL+ L+ VS+E+
Sbjct: 133 DQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 180
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL + +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|125624543|ref|YP_001033026.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
gi|389854915|ref|YP_006357159.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
gi|189043323|sp|A2RLZ8.1|RNC_LACLM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|124493351|emb|CAL98325.1| ribonuclease III [Lactococcus lactis subsp. cremoris MG1363]
gi|300071337|gb|ADJ60737.1| ribonuclease III [Lactococcus lactis subsp. cremoris NZ9000]
Length = 231
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 165 LLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H F + + A + RL FLG L L ++ + YP + + +
Sbjct: 21 LLKTAFTHSSFTNEERLPKI-ANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRS 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + ++ + +++ ++RE ++++F A GA+++ G EV
Sbjct: 80 SIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDEVR 139
Query: 284 RVLFEV 289
+ + V
Sbjct: 140 KFIQHV 145
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 157 NPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPA 216
NP + L + +++ P+ + RL FLG VL+L EF ++P+
Sbjct: 17 NPQLIVEALTHKSYKKPY-----------NNERLEFLGDAVLDLIVGEFLFHKFPQSDEG 65
Query: 217 PMRERVFGLIGRRNLPKWIKAASLQNLIF--PFDEMDRLIRKEREPP--VKSVFWALFGA 272
+ + L+ +A L I+ P +E + + R P + + F A+ GA
Sbjct: 66 VLSKIRASLVNESGFATLARAIDLGRYIYLSPAEENN----QGRSKPSLLSNAFEAVIGA 121
Query: 273 IYLCFGFPE----VYRVLFEVF 290
IYL G V R+L E +
Sbjct: 122 IYLEAGLENARSIVVRLLDETY 143
>gi|339450918|ref|ZP_08654288.1| ribonuclease III [Leuconostoc lactis KCTC 3528]
Length = 240
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++++ E+ +RYP + E ++ R+ + + L +
Sbjct: 52 YQRLEFLGDSVMQVSVAEYLFKRYPAWHEGQLTEMRIAMVQTRSFAHFSRLVHLNEAVRL 111
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
+ +ER+ ++ ++ A GA+YL G V L
Sbjct: 112 GKGEEMSGARERDSLLEDIWEAFIGALYLDQGADAVQEFL 151
>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
gi|383327459|ref|YP_005353343.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|406580108|ref|ZP_11055328.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|406582771|ref|ZP_11057868.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|406585121|ref|ZP_11060116.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410938000|ref|ZP_11369858.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|415897961|ref|ZP_11551209.1| ribonuclease III [Enterococcus faecium E4453]
gi|416134603|ref|ZP_11598307.1| ribonuclease III [Enterococcus faecium E4452]
gi|427396987|ref|ZP_18889613.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430820973|ref|ZP_19439591.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430823321|ref|ZP_19441893.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430826392|ref|ZP_19444576.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430828822|ref|ZP_19446936.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430831864|ref|ZP_19449912.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430834832|ref|ZP_19452834.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430836416|ref|ZP_19454397.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430839338|ref|ZP_19457279.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430842447|ref|ZP_19460362.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430843103|ref|ZP_19461005.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430850746|ref|ZP_19468503.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430853246|ref|ZP_19470976.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430855706|ref|ZP_19473412.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430858967|ref|ZP_19476585.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430861281|ref|ZP_19478870.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430866354|ref|ZP_19481631.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430892080|ref|ZP_19484486.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430952324|ref|ZP_19486367.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430999207|ref|ZP_19488175.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|431036460|ref|ZP_19492230.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|431081664|ref|ZP_19495754.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|431118143|ref|ZP_19498097.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|431209600|ref|ZP_19500961.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|431234955|ref|ZP_19502978.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|431255661|ref|ZP_19504784.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|431303493|ref|ZP_19508340.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|431380466|ref|ZP_19510847.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|431438089|ref|ZP_19513252.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|431506848|ref|ZP_19515674.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|431545032|ref|ZP_19518673.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|431592292|ref|ZP_19521528.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|431695910|ref|ZP_19524804.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|431739025|ref|ZP_19527965.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|431740695|ref|ZP_19529606.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|431744016|ref|ZP_19532889.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|431747189|ref|ZP_19535988.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|431749381|ref|ZP_19538122.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|431753069|ref|ZP_19541747.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|431755895|ref|ZP_19544537.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|431757896|ref|ZP_19546525.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|431760118|ref|ZP_19548722.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|431763163|ref|ZP_19551716.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|431764954|ref|ZP_19553480.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|431768030|ref|ZP_19556471.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|431769465|ref|ZP_19557875.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|431773324|ref|ZP_19561650.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|431776421|ref|ZP_19564683.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|431779658|ref|ZP_19567850.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|431782539|ref|ZP_19570672.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|431784360|ref|ZP_19572402.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|447911625|ref|YP_007393037.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|364090286|gb|EHM32892.1| ribonuclease III [Enterococcus faecium E4453]
gi|364092476|gb|EHM34848.1| ribonuclease III [Enterococcus faecium E4452]
gi|378937153|gb|AFC62225.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|404454612|gb|EKA01534.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|404457508|gb|EKA04045.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|404463103|gb|EKA08801.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410733639|gb|EKQ75562.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|425722734|gb|EKU85628.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430438958|gb|ELA49349.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430442419|gb|ELA52464.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430445116|gb|ELA54900.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430480505|gb|ELA57679.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430482717|gb|ELA59822.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430484901|gb|ELA61848.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430488543|gb|ELA65214.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430490796|gb|ELA67292.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430493528|gb|ELA69831.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430498157|gb|ELA74165.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430535105|gb|ELA75528.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430541068|gb|ELA81245.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430544486|gb|ELA84515.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430546248|gb|ELA86210.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430550314|gb|ELA90111.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430551582|gb|ELA91333.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430555745|gb|ELA95280.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430557459|gb|ELA96918.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430563000|gb|ELB02231.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|430563314|gb|ELB02543.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|430565596|gb|ELB04742.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|430568100|gb|ELB07157.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|430570632|gb|ELB09578.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|430572815|gb|ELB11651.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|430577859|gb|ELB16439.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|430580134|gb|ELB18614.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|430582334|gb|ELB20761.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|430586924|gb|ELB25166.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|430587235|gb|ELB25468.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|430591917|gb|ELB29944.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|430592080|gb|ELB30102.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|430596568|gb|ELB34392.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|430597863|gb|ELB35645.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|430602778|gb|ELB40328.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|430606079|gb|ELB43451.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|430606718|gb|ELB44056.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|430611510|gb|ELB48591.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|430612817|gb|ELB49848.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|430616010|gb|ELB52935.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|430618401|gb|ELB55248.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|430622857|gb|ELB59567.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|430625387|gb|ELB62027.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|430629725|gb|ELB66114.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|430629759|gb|ELB66147.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|430636747|gb|ELB72807.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|430637040|gb|ELB73084.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|430640972|gb|ELB76793.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|430641420|gb|ELB77222.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|430647176|gb|ELB82624.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|430649934|gb|ELB85301.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|445187334|gb|AGE28976.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 228
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 157 NPAKHFDTLLYLAFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215
N H LL AF H N+ R+++ + + RL FLG VLEL ++ + YP
Sbjct: 14 NIVFHDLNLLEQAFTHS-SYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPE 72
Query: 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
+ + ++ +L K+ K + + + R + +F A GA+YL
Sbjct: 73 GKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLGALYL 132
Query: 276 CFGFPEVYRVLFEVF------GMDPEDKECQPKLRRQLEDVDYVSVEF 317
GF + + +V G + + + KL+ L+ VS+E+
Sbjct: 133 DQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 180
>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|389867284|ref|YP_006374707.1| ribonuclease III [Enterococcus faecium DO]
gi|424763790|ref|ZP_18191255.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|424791403|ref|ZP_18217835.1| ribonuclease III [Enterococcus faecium V689]
gi|424797447|ref|ZP_18223031.1| ribonuclease III [Enterococcus faecium S447]
gi|424828237|ref|ZP_18252973.1| ribonuclease III [Enterococcus faecium R501]
gi|424854841|ref|ZP_18279184.1| ribonuclease III [Enterococcus faecium R499]
gi|424869418|ref|ZP_18293122.1| ribonuclease III [Enterococcus faecium R497]
gi|424950205|ref|ZP_18365376.1| ribonuclease III [Enterococcus faecium R496]
gi|424954344|ref|ZP_18369246.1| ribonuclease III [Enterococcus faecium R494]
gi|424958431|ref|ZP_18373077.1| ribonuclease III [Enterococcus faecium R446]
gi|424960282|ref|ZP_18374813.1| ribonuclease III [Enterococcus faecium P1986]
gi|424965596|ref|ZP_18379547.1| ribonuclease III [Enterococcus faecium P1190]
gi|424969514|ref|ZP_18383084.1| ribonuclease III [Enterococcus faecium P1140]
gi|424970489|ref|ZP_18383998.1| ribonuclease III [Enterococcus faecium P1139]
gi|424974109|ref|ZP_18387361.1| ribonuclease III [Enterococcus faecium P1137]
gi|424976652|ref|ZP_18389725.1| ribonuclease III [Enterococcus faecium P1123]
gi|424981080|ref|ZP_18393833.1| ribonuclease III [Enterococcus faecium ERV99]
gi|424984594|ref|ZP_18397122.1| ribonuclease III [Enterococcus faecium ERV69]
gi|424987454|ref|ZP_18399829.1| ribonuclease III [Enterococcus faecium ERV38]
gi|424990906|ref|ZP_18403096.1| ribonuclease III [Enterococcus faecium ERV26]
gi|424994563|ref|ZP_18406498.1| ribonuclease III [Enterococcus faecium ERV168]
gi|424997392|ref|ZP_18409155.1| ribonuclease III [Enterococcus faecium ERV165]
gi|425001410|ref|ZP_18412929.1| ribonuclease III [Enterococcus faecium ERV161]
gi|425003989|ref|ZP_18415319.1| ribonuclease III [Enterococcus faecium ERV102]
gi|425006908|ref|ZP_18418063.1| ribonuclease III [Enterococcus faecium ERV1]
gi|425010840|ref|ZP_18421771.1| ribonuclease III [Enterococcus faecium E422]
gi|425014158|ref|ZP_18424853.1| ribonuclease III [Enterococcus faecium E417]
gi|425017866|ref|ZP_18428347.1| ribonuclease III [Enterococcus faecium C621]
gi|425020875|ref|ZP_18431162.1| ribonuclease III [Enterococcus faecium C497]
gi|425030492|ref|ZP_18435665.1| ribonuclease III [Enterococcus faecium C1904]
gi|425032631|ref|ZP_18437657.1| ribonuclease III [Enterococcus faecium 515]
gi|425035582|ref|ZP_18440417.1| ribonuclease III [Enterococcus faecium 514]
gi|425037922|ref|ZP_18442559.1| ribonuclease III [Enterococcus faecium 513]
gi|425041759|ref|ZP_18446142.1| ribonuclease III [Enterococcus faecium 511]
gi|425045378|ref|ZP_18449484.1| ribonuclease III [Enterococcus faecium 510]
gi|425048552|ref|ZP_18452452.1| ribonuclease III [Enterococcus faecium 509]
gi|425051643|ref|ZP_18455300.1| ribonuclease III [Enterococcus faecium 506]
gi|425054205|ref|ZP_18457718.1| ribonuclease III [Enterococcus faecium 505]
gi|425058185|ref|ZP_18461576.1| ribonuclease III [Enterococcus faecium 504]
gi|425060584|ref|ZP_18463875.1| ribonuclease III [Enterococcus faecium 503]
gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
gi|388532533|gb|AFK57725.1| ribonuclease III [Enterococcus faecium DO]
gi|402421966|gb|EJV54209.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|402919418|gb|EJX40018.1| ribonuclease III [Enterococcus faecium V689]
gi|402921003|gb|EJX41473.1| ribonuclease III [Enterococcus faecium S447]
gi|402922876|gb|EJX43220.1| ribonuclease III [Enterococcus faecium R501]
gi|402932233|gb|EJX51763.1| ribonuclease III [Enterococcus faecium R499]
gi|402933494|gb|EJX52920.1| ribonuclease III [Enterococcus faecium R496]
gi|402935590|gb|EJX54830.1| ribonuclease III [Enterococcus faecium R497]
gi|402936978|gb|EJX56122.1| ribonuclease III [Enterococcus faecium R494]
gi|402940215|gb|EJX59069.1| ribonuclease III [Enterococcus faecium R446]
gi|402943291|gb|EJX61787.1| ribonuclease III [Enterococcus faecium P1190]
gi|402948361|gb|EJX66507.1| ribonuclease III [Enterococcus faecium P1986]
gi|402948484|gb|EJX66621.1| ribonuclease III [Enterococcus faecium P1140]
gi|402957456|gb|EJX74847.1| ribonuclease III [Enterococcus faecium P1137]
gi|402961653|gb|EJX78665.1| ribonuclease III [Enterococcus faecium P1139]
gi|402964694|gb|EJX81462.1| ribonuclease III [Enterococcus faecium ERV99]
gi|402968541|gb|EJX85020.1| ribonuclease III [Enterococcus faecium ERV69]
gi|402968950|gb|EJX85399.1| ribonuclease III [Enterococcus faecium P1123]
gi|402974331|gb|EJX90387.1| ribonuclease III [Enterococcus faecium ERV38]
gi|402978365|gb|EJX94109.1| ribonuclease III [Enterococcus faecium ERV26]
gi|402979859|gb|EJX95504.1| ribonuclease III [Enterococcus faecium ERV168]
gi|402986368|gb|EJY01496.1| ribonuclease III [Enterococcus faecium ERV165]
gi|402986862|gb|EJY01966.1| ribonuclease III [Enterococcus faecium ERV161]
gi|402990642|gb|EJY05507.1| ribonuclease III [Enterococcus faecium ERV102]
gi|402996112|gb|EJY10515.1| ribonuclease III [Enterococcus faecium ERV1]
gi|402998652|gb|EJY12898.1| ribonuclease III [Enterococcus faecium E422]
gi|402999508|gb|EJY13695.1| ribonuclease III [Enterococcus faecium E417]
gi|403002725|gb|EJY16671.1| ribonuclease III [Enterococcus faecium C1904]
gi|403003493|gb|EJY17390.1| ribonuclease III [Enterococcus faecium C621]
gi|403008053|gb|EJY21582.1| ribonuclease III [Enterococcus faecium C497]
gi|403012388|gb|EJY25615.1| ribonuclease III [Enterococcus faecium 515]
gi|403017688|gb|EJY30416.1| ribonuclease III [Enterococcus faecium 514]
gi|403020703|gb|EJY33211.1| ribonuclease III [Enterococcus faecium 513]
gi|403025540|gb|EJY37618.1| ribonuclease III [Enterococcus faecium 511]
gi|403027144|gb|EJY39053.1| ribonuclease III [Enterococcus faecium 510]
gi|403030483|gb|EJY42166.1| ribonuclease III [Enterococcus faecium 509]
gi|403036473|gb|EJY47821.1| ribonuclease III [Enterococcus faecium 505]
gi|403037263|gb|EJY48563.1| ribonuclease III [Enterococcus faecium 506]
gi|403038979|gb|EJY50160.1| ribonuclease III [Enterococcus faecium 504]
gi|403042468|gb|EJY53418.1| ribonuclease III [Enterococcus faecium 503]
Length = 231
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 157 NPAKHFDTLLYLAFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215
N H LL AF H N+ R+++ + + RL FLG VLEL ++ + YP
Sbjct: 17 NIVFHDLNLLEQAFTHS-SYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPE 75
Query: 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
+ + ++ +L K+ K + + + R + +F A GA+YL
Sbjct: 76 GKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLGALYL 135
Query: 276 CFGFPEVYRVLFEVF------GMDPEDKECQPKLRRQLEDVDYVSVEF 317
GF + + +V G + + + KL+ L+ VS+E+
Sbjct: 136 DQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 183
>gi|385222103|ref|YP_005771236.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 234
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 141 QALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLEL 200
+ALGYS + KH LL A H C+ + + RL FLG VL L
Sbjct: 18 KALGYSFKD----------KH---LLEQALTHKSCK------LALNNERLEFLGDAVLGL 58
Query: 201 AFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREP 260
E ++ + + + ++ + K K SLQ+ + + +E+
Sbjct: 59 VIGELLYHKFYQYDEGKLSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGREKPS 118
Query: 261 PVKSVFWALFGAIYLCFGFPEVYRVL 286
+ S F AL +YL G +V +++
Sbjct: 119 ILSSAFEALMAGVYLEAGLDKVRKIM 144
>gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629]
gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1]
Length = 227
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H K + + RL FLG VLE+ EF YP++ + +
Sbjct: 20 LLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFINYPQKPEGELTKLRAS 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ L K L + D ++R+ + A+ GAIYL GF
Sbjct: 80 IVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAVIGAIYLDGGFTNAKE 139
Query: 285 VLFEVFGMDPEDKE 298
+ D E+K+
Sbjct: 140 FVLRFIMTDIENKQ 153
>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|424737014|ref|ZP_18165470.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|422948846|gb|EKU43222.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
Length = 254
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LLY AF H R + + RL FLG VLEL+ ++ ++YP S + +
Sbjct: 38 NLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRA 97
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
++ +L + + + +ER + VF + GA+YL
Sbjct: 98 SIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFESFVGALYL 149
>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
Length = 254
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LLY AF H R + + RL FLG VLEL+ ++ ++YP S + +
Sbjct: 38 NLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRA 97
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
++ +L + + + +ER + VF + GA+YL
Sbjct: 98 SIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFESFVGALYL 149
>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
Length = 254
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LLY AF H R + + RL FLG VLEL+ ++ ++YP S + +
Sbjct: 38 NLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRA 97
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
++ +L + + + +ER + VF + GA+YL
Sbjct: 98 SIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFESFVGALYL 149
>gi|338732330|ref|YP_004670803.1| ribonuclease 3 [Simkania negevensis Z]
gi|336481713|emb|CCB88312.1| ribonuclease 3 [Simkania negevensis Z]
Length = 236
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 163 DTLLYLAFQH-PFCERNKARHVRAGHS-RLCFLGQFVLELAFCEFF---LQRYPRESPAP 217
++LL AF H F N+ R V GH+ RL FLG VL + +F L +P +
Sbjct: 25 ESLLERAFIHRSFI--NENRGVVKGHNERLEFLGDAVLSVLVSDFLYSELPDHPEGELSY 82
Query: 218 MRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF 277
+R R L+ +I+ +Q+ I K R + +F AL GAIYL
Sbjct: 83 LRSR---LVEATTCAMYIEKLDVQSFILMGKGESMNQGKGRSTILADLFEALIGAIYLDG 139
Query: 278 GFPEVYR 284
E +R
Sbjct: 140 AMEEAHR 146
>gi|281491298|ref|YP_003353278.1| ribonuclease III [Lactococcus lactis subsp. lactis KF147]
gi|281375039|gb|ADA64557.1| Ribonuclease III [Lactococcus lactis subsp. lactis KF147]
Length = 231
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 49/105 (46%)
Query: 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244
A + RL FLG L L ++ + YP + + + ++ +L + ++ +
Sbjct: 41 ANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFL 100
Query: 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEV 289
+++ ++RE ++++F A GA+++ G EV + + V
Sbjct: 101 RLGHGEEKMGGRDRETTLENLFEAFLGALFIDQGMDEVRKFIQHV 145
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
+LL AF H RN+ R + RL FLG VLEL EF + YPR +
Sbjct: 20 SLLRQAFTHS-SYRNEHRGDVEDNERLEFLGDAVLELLVSEFLFRAYPRFPEGELTRMRA 78
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP-VKSVFWALFGAIYLCFGF 279
++ +L ++ A L I + + R P + V+ AL GAI+L G
Sbjct: 79 AIVCEPSLVRFATALGLDQYI-RLGRGEEMSGGRRRPSLLADVYEALIGAIFLDQGL 134
>gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003]
Length = 151
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|347521284|ref|YP_004778855.1| ribonuclease III [Lactococcus garvieae ATCC 49156]
gi|385832667|ref|YP_005870442.1| ribonuclease III [Lactococcus garvieae Lg2]
gi|420143885|ref|ZP_14651373.1| Ribonuclease 3 (Ribonuclease III) [Lactococcus garvieae IPLA 31405]
gi|343179852|dbj|BAK58191.1| ribonuclease III [Lactococcus garvieae ATCC 49156]
gi|343181820|dbj|BAK60158.1| ribonuclease III [Lactococcus garvieae Lg2]
gi|391855337|gb|EIT65886.1| Ribonuclease 3 (Ribonuclease III) [Lactococcus garvieae IPLA 31405]
Length = 231
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL +AF H + A + RL FLG L L E+ + YP + + +
Sbjct: 19 EELLKIAFTHSSYTNEERLPKVANNERLEFLGDVALSLIISEYLYRTYPDKLEGELSKMR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + + + ++ + R+ ++++F A GA++L G EV
Sbjct: 79 SSIVRTESLANFSRQCEFGRFLRLGNGEEKTGGRNRDTNLENLFEAFLGALFLDAGMEEV 138
Query: 283 YRVLFEV 289
R + V
Sbjct: 139 RRFINRV 145
>gi|403069218|ref|ZP_10910550.1| ribonuclease III [Oceanobacillus sp. Ndiop]
Length = 227
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Query: 151 DQLGDD-NPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQR 209
DQL ++ N H +L+ AF H + V + + RL FLG VLEL ++ ++
Sbjct: 4 DQLENELNIKFHDHSLIKQAFTHSSYVNEHRKTVFSDNERLEFLGDAVLELGVSQYLFRK 63
Query: 210 YPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWAL 269
M + ++ +L + + + + +ER + VF A
Sbjct: 64 NQDMPEGEMTKLRAAIVCEPSLMNFAVELNFGEFLLLGKGEEMTGGRERPAILADVFEAF 123
Query: 270 FGAIYLCFGFPEVYRVLFE 288
GA+YL GF E R L E
Sbjct: 124 LGALYLDQGFDEALRFLKE 142
>gi|406589966|ref|ZP_11064377.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
gi|404470038|gb|EKA14718.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
Length = 220
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 157 NPAKHFDTLLYLAFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215
N H LL AF H N+ R+++ + + RL FLG VLEL ++ + YP
Sbjct: 6 NIVFHDLNLLEQAFTHS-SYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLPE 64
Query: 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYL 275
+ + ++ +L K+ K + + + R + +F A GA+YL
Sbjct: 65 GKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKGEENSGGRTRPALLCDLFEAFLGALYL 124
Query: 276 CFGFPEVYRVLFEVF------GMDPEDKECQPKLRRQLEDVDYVSVEF 317
GF + + +V G + + + KL+ L+ VS+E+
Sbjct: 125 DQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQKSGDVSIEY 172
>gi|365904207|ref|ZP_09441966.1| ribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 229
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 178 NKARHVRAG-HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRN-LPKWI 235
N+ + + G + RL FLG VLE+ E+ +P E P R+ I R + K+
Sbjct: 35 NEHKELNIGDYERLEFLGDAVLEINISEYLFTHFP-ELPEGKLTRLRSDIVRTDSFAKFA 93
Query: 236 KAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF----- 290
K + + ++ + R ++ +F A GA+YL G V + L +V
Sbjct: 94 KQIHIDKYLQIGRGEEKQGARSRHTLLEDIFEAFNGALYLDQGNDVVEQFLTQVVYPHIA 153
Query: 291 -GMDPEDKECQPKLRRQLE-----DVDYVSVEFEG 319
G ED + + L+ +L+ D+DY V+ EG
Sbjct: 154 SGEFSEDTDFKTHLQEKLQKSGEVDIDYHVVDEEG 188
>gi|389575595|ref|ZP_10165623.1| ribonuclease III [Eubacterium cellulosolvens 6]
gi|389311080|gb|EIM56013.1| ribonuclease III [Eubacterium cellulosolvens 6]
Length = 228
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 48/133 (36%)
Query: 166 LYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
L LA H + R + RL FLG VLEL E+ YP + L
Sbjct: 21 LKLAMSHSSYANEQHLGHRGCNERLEFLGDAVLELVSSEYLYDTYPEMPEGKLTRLRASL 80
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRV 285
+ L + L + D ++R+ V A GAI+ GF E +
Sbjct: 81 VCEPTLAYDARCIGLPEYLLLGKGEDATGGRKRDSVVSDALEATIGAIFKDGGFEEAKKF 140
Query: 286 LFEVFGMDPEDKE 298
+ D E+K+
Sbjct: 141 ILRYIMNDVENKQ 153
>gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064]
Length = 206
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL + +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|429205352|ref|ZP_19196629.1| ribonuclease III [Lactobacillus saerimneri 30a]
gi|428146424|gb|EKW98663.1| ribonuclease III [Lactobacillus saerimneri 30a]
Length = 230
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 165 LLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL AF H + +K H++ + R+ FLG V++L E+ +RYP +
Sbjct: 22 LLDEAFTHASYANEHKREHLKY-YERIEFLGDAVMQLCVSEYLFKRYPLMPEGKLSRLRA 80
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVK-------SVFWALFGAIYLC 276
++ + K+ FDE RL + E + + +F A GA+YL
Sbjct: 81 AMVREESFSKFAVECH-------FDEYIRLGKGEEKSNARQRPALLCDIFEAFIGALYLD 133
Query: 277 FGFPEVYRVL 286
G EV R +
Sbjct: 134 QGKDEVVRFI 143
>gi|167765553|ref|ZP_02437617.1| hypothetical protein CLOSS21_00047 [Clostridium sp. SS2/1]
gi|317498509|ref|ZP_07956803.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|429761479|ref|ZP_19293904.1| ribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167712738|gb|EDS23317.1| ribonuclease III [Clostridium sp. SS2/1]
gi|291559019|emb|CBL37819.1| RNAse III [butyrate-producing bacterium SSC/2]
gi|316894202|gb|EFV16390.1| ribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|429183732|gb|EKY24773.1| ribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 228
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%)
Query: 166 LYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
L+ AF H + + RL FLG VLEL + + Y +ES + + L
Sbjct: 23 LWNAFIHSSYANERRMSKDKNNERLEFLGDAVLELVTSNYLYRTYQKESEGKLSKIRASL 82
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRV 285
+ L + +L + D + R+ + F A+ GAIYL G +
Sbjct: 83 VCEPTLAGCARDINLGKYVLLSKGEDMTGGRSRDSILSDAFEAVIGAIYLDQGIETATKF 142
Query: 286 LFEVFGMDPEDK 297
+ D E+K
Sbjct: 143 IETYLFKDVENK 154
>gi|421766726|ref|ZP_16203495.1| Ribonuclease III [Lactococcus garvieae DCC43]
gi|407624752|gb|EKF51485.1| Ribonuclease III [Lactococcus garvieae DCC43]
Length = 231
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL +AF H + A + RL FLG L L E+ + YP + + +
Sbjct: 19 EELLKIAFTHSSYTNEERLPKVANNERLEFLGDVALSLIISEYLYRTYPDKLEGELSKMR 78
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + + + + ++ + R+ ++++F A GA++L G EV
Sbjct: 79 SSIVRTESLANFSRQCEFGRFLLLGNGEEKTGGRNRDTNLENLFEAFLGALFLDSGMEEV 138
>gi|387927066|ref|ZP_10129745.1| ribonuclease III [Bacillus methanolicus PB1]
gi|387589210|gb|EIJ81530.1| ribonuclease III [Bacillus methanolicus PB1]
Length = 253
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL AF H + + RL FLG VLEL ++ ++YP S + +
Sbjct: 34 EKLLKQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQYLFKKYPMMSEGELTKLR 93
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + S LI + + R + VF A GA+YL G V
Sbjct: 94 AAVVCEPSLVSFANELSFGELILLGKGEEMTGGRARPALLADVFEAFIGALYLDKGIETV 153
Query: 283 YRVL 286
+ L
Sbjct: 154 TKFL 157
>gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
Length = 221
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
+LL+LA H + + + +L FLG +L ++ ES + +
Sbjct: 16 SLLFLALTH-------SSYSNINNEKLEFLGDSILNTCITSILFNKFKNESEGFLSKFRS 68
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
L+ R L K +L N +F + + + + S ALFGAIY+ F +
Sbjct: 69 YLVRREKLYNISKKINLYNFLFLGNSEIKNSGNLKISILSSTLEALFGAIYIDSDFNTIN 128
Query: 284 RVLFEVFGMDPED-------KECQPKLRRQLEDVDY 312
++++++ D + K+ + L+ L+ + Y
Sbjct: 129 NIIYKLYKFDINNFNIKYNIKDFKTLLQENLQKMKY 164
>gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656]
gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656]
Length = 237
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H K + + RL FLG VLE+ EF YP++ + +
Sbjct: 30 LLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFINYPQKPEGELTKLRAS 89
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ L K L + D ++R+ + A+ GAIYL GF
Sbjct: 90 IVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALEAVIGAIYLDGGFTNAKE 149
Query: 285 VLFEVFGMDPEDKE 298
+ D E+K+
Sbjct: 150 FVLRFIMTDIENKQ 163
>gi|296535948|ref|ZP_06898097.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
gi|296263721|gb|EFH10197.1| ribonuclease III [Roseomonas cervicalis ATCC 49957]
Length = 234
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A H N R + + RL FLG VL L E+ +R+P E + +R+
Sbjct: 27 LLEQALTHRSAA-NPRRDMLDSNERLEFLGDRVLALVMAEWLSERFPAEREGALGKRLSV 85
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
L+ L K +A L ++ R + R + AL GA+YL G
Sbjct: 86 LVAAETLAKVGEAIGLPAMLRVPPAEGRTGLRGRATVIADATEALIGALYLDAGL 140
>gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ]
gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ]
Length = 228
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL A HP + A + RL FLG VL + Q +P +
Sbjct: 18 LLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALPEGDLSRLRSS 77
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
L+ + L + A + LI +R + + VF AL GAI+ GF V +
Sbjct: 78 LVDQPRLARLAVDAGIPPLILMGKGAEREGGRTNPSILADVFEALLGAIHCDAGFAAVQQ 137
Query: 285 VLFEVF 290
V+ ++
Sbjct: 138 VVKHIY 143
>gi|381169118|ref|ZP_09878292.1| Ribonuclease 3 [Phaeospirillum molischianum DSM 120]
gi|380681732|emb|CCG43114.1| Ribonuclease 3 [Phaeospirillum molischianum DSM 120]
Length = 228
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Query: 165 LLYLAFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
LL A HP ++ + R A + RL FLG VL L + QRYP E+ + R
Sbjct: 20 LLTQALTHPSIDQGRRNRKRSANYERLEFLGDRVLGLVVADMLYQRYPNEAEGALARRFT 79
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGF 279
L+ + + + L + D + + A+ GA++ GF
Sbjct: 80 ALVRGETVAQVAETIGLGAYLAMARGDDEAGGRANPGILADACEAVIGALFADAGF 135
>gi|339443141|ref|YP_004709146.1| hypothetical protein CXIVA_20770 [Clostridium sp. SY8519]
gi|338902542|dbj|BAK48044.1| hypothetical protein CXIVA_20770 [Clostridium sp. SY8519]
Length = 230
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
+ LL A H K R+ + RL FLG VLEL ++ RY + ++
Sbjct: 18 EGLLRQALTHSSYANEKHMKKRSDNERLEFLGDAVLELVSSDWLYSRYTDVPEGELTKKR 77
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKS-VFWALFGAIYLCFGFP 280
++ +L + L +F + + L R P V S F A+ GAIYL GF
Sbjct: 78 ASIVCEPSLAFLSRKIDLGRYLF-LGKGEDLTGGRRRPSVLSDAFEAVIGAIYLDGGFS 135
>gi|414074022|ref|YP_006999239.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
gi|413973942|gb|AFW91406.1| ribonuclease III [Lactococcus lactis subsp. cremoris UC509.9]
Length = 231
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 163 DTLLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRER 221
+ LL AF H F + + A + RL FLG L L ++ + YP + + +
Sbjct: 19 EDLLKTAFTHSSFTNEERLPKI-ANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKM 77
Query: 222 VFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE 281
++ +L + ++ + +++ ++RE ++++F + GA+++ G E
Sbjct: 78 RSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRETTLENLFESFLGALFIDQGMDE 137
Query: 282 VYRVLFEV 289
V + + V
Sbjct: 138 VRKFIQHV 145
>gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515]
Length = 158
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL ++ +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY- 283
++ +L ++ +A + ++ + R + VF + GA+YL G +V
Sbjct: 80 IVCEPSLVEFAEAVHFSXYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVT 139
Query: 284 ---RVLF 287
RV+F
Sbjct: 140 FLERVIF 146
>gi|408356893|ref|YP_006845424.1| ribonuclease III [Amphibacillus xylanus NBRC 15112]
gi|407727664|dbj|BAM47662.1| ribonuclease III [Amphibacillus xylanus NBRC 15112]
Length = 229
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H ++ + RL FLG VLEL ++ + YP + + +
Sbjct: 19 LLIQAFTHSSYVNENRNKIQQDNERLEFLGDAVLELGISQYLYRTYPNKPEGELTKLRAT 78
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ L K+ + +R ++R + VF A GA+YL F V
Sbjct: 79 IVCEPALVKFALDLKFDQYVLLGKGEERTGGRKRPALLADVFEAFIGALYLDQDFNAVVN 138
Query: 285 VLFEVFGMDPEDKECQPKLRR--QLEDVDYVS 314
L K PK++ ++++DY S
Sbjct: 139 FLH---------KYIYPKIKNGFMIKEIDYKS 161
>gi|395243006|ref|ZP_10419994.1| Ribonuclease 3 [Lactobacillus hominis CRBIP 24.179]
gi|394484826|emb|CCI81002.1| Ribonuclease 3 [Lactobacillus hominis CRBIP 24.179]
Length = 225
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ +L FLG VLELA ++ + +P+ + + ++ ++ K Q +
Sbjct: 43 YEKLEFLGDAVLELAVSDYLYRHFPKLNEGELTRLRSNIVRTEGFSEFAKECGFQKEVNL 102
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVL 286
++ ++R+ ++ VF A GA++L G P V L
Sbjct: 103 GKGEEKAGARQRKTLLEDVFEAFNGALFLDQGMPAVQHFL 142
>gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
29176]
gi|197297926|gb|EDY32478.1| ribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 229
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 60/166 (36%), Gaps = 13/166 (7%)
Query: 132 IDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLC 191
+D+ L E ++ +GY+ E LL A H K + RL
Sbjct: 1 MDKRLKELEKKIGYTFENH-------------KLLERAMMHSSYTNEKHLEKYRCNERLE 47
Query: 192 FLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMD 251
FLG VLEL E+ PR S + + ++ +L + L + + +
Sbjct: 48 FLGDAVLELISSEYLFGELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEE 107
Query: 252 RLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDK 297
+ R+ AL GAIYL GF + D EDK
Sbjct: 108 ATGGRMRDSITSDAMEALIGAIYLDGGFTSAKEFIHRFILTDLEDK 153
>gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
10507]
gi|225040509|gb|EEG50755.1| ribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 244
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 13/167 (7%)
Query: 132 IDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLC 191
+ E L E ++ LGY Q D N LL A H K + RL
Sbjct: 8 MTETLKELEKELGY------QFRDIN-------LLKQAVTHSSYSNEKNMGKLGCNERLE 54
Query: 192 FLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMD 251
FLG VLE+ EF Q++P + ++ ++ L + L N + +
Sbjct: 55 FLGDAVLEVISSEFLYQKFPILQEGELTKKRASMVCEPTLALCAREIRLDNYLLLGHGEE 114
Query: 252 RLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE 298
++R+ V A+ GAIYL G + + D E K+
Sbjct: 115 NTGGRKRDSIVSDALEAVIGAIYLDGGLASAKEFILKHVLNDMEHKQ 161
>gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
Length = 220
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 179 KARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA 238
K+ + + ++ FLG VL L + L+ YP E + ++ L+ +R + K
Sbjct: 29 KSHNSLKNNEKIEFLGDRVLGLVIAKKLLEIYPDEKEGILDKKFASLVNKRTCLEIAKNI 88
Query: 239 SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290
+L+ I F+ ++ K + + AL GA+YL G +++ +++
Sbjct: 89 NLEKYILTFN-LNNKKIKIEDKIISDCCEALIGALYLDKGLNITEKIILDLW 139
>gi|402299450|ref|ZP_10819056.1| ribonuclease III [Bacillus alcalophilus ATCC 27647]
gi|401725368|gb|EJS98656.1| ribonuclease III [Bacillus alcalophilus ATCC 27647]
Length = 263
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H + + RL FLG VLELA +F +++ S M +
Sbjct: 51 LLIQAFTHSSYVNEHRIYTFQDNERLEFLGDAVLELAVSQFLFKKFKAMSEGDMTKLRAS 110
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ +L K+ + L+ + + R + VF A GA+YL G V+
Sbjct: 111 IVCEPSLAKFAEELQFGQLVLLGKGEEITGGRLRPALLADVFEAFIGALYLDQGIDAVFE 170
Query: 285 VL 286
L
Sbjct: 171 FL 172
>gi|224476345|ref|YP_002633951.1| ribonuclease III [Staphylococcus carnosus subsp. carnosus TM300]
gi|254807899|sp|B9DPJ2.1|RNC_STACT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|222420952|emb|CAL27766.1| putative ribonuclease III [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 242
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%)
Query: 185 AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244
A + RL FLG VLEL + +YP + + ++ +L + L LI
Sbjct: 53 AHNERLEFLGDAVLELTVSRYLFDKYPELPEGNLTKMRATIVCEPSLVIFANKIQLNELI 112
Query: 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPEDKE 298
++ + R V F A GA+YL G V++ EV ED E
Sbjct: 113 LLGKGEEKTGGRTRPSLVSDAFEAFVGALYLDQGLDAVWQFSEEVIFPHVEDDE 166
>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
Length = 251
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
TLLY AF H R + RL FLG VLEL+ + +YP S + +
Sbjct: 38 TLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYMKYPEMSEGELTKLRA 97
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVY 283
++ +L + I + + R + VF + GA+YL G V
Sbjct: 98 AIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFESYIGALYLDQGLEPVV 157
Query: 284 RVL 286
L
Sbjct: 158 SFL 160
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFG 224
LL AF H R + RL FLG VLEL + +YP + M +
Sbjct: 20 LLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAA 79
Query: 225 LIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYR 284
++ +L ++ + + ++ + R + VF + GA+YL G +V +
Sbjct: 80 IVCEPSLVEFAEVVHFSKYVRLGKGEEKAGGRTRPALLADVFESFIGALYLDNGLEKVVK 139
Query: 285 VL 286
L
Sbjct: 140 FL 141
>gi|407477596|ref|YP_006791473.1| ribonuclease 3 [Exiguobacterium antarcticum B7]
gi|407061675|gb|AFS70865.1| Ribonuclease 3 [Exiguobacterium antarcticum B7]
Length = 269
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 11/167 (6%)
Query: 161 HFDT--LLYLAFQHP-FCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAP 217
HF LL AF H F N+ R + RL FLG VLEL + Q Y
Sbjct: 54 HFSNVDLLKQAFTHSSFV--NEQRESDGDNERLEFLGDAVLELTVSRYLFQHYHLVDEGE 111
Query: 218 MRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCF 277
+ + ++ +L ++ +I + + R + VF A GA+YL
Sbjct: 112 LTKLRAAIVCEPSLVQFANHYQFSEMILLGKGEELTGGRNRPALLADVFEAFIGALYLDQ 171
Query: 278 GFPEVYRVLFE-VF-----GMDPEDKECQPKLRRQLEDVDYVSVEFE 318
G R L E VF G E + + +L+ ++ V +E+E
Sbjct: 172 GIDAAERFLAEAVFPKVASGFFEEQTDFKSQLQEAIQRVGLGQIEYE 218
>gi|398304079|ref|ZP_10507665.1| ribonuclease III [Bacillus vallismortis DV1-F-3]
Length = 213
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%)
Query: 166 LYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
+Y AF H + + RL FLG VLEL F +YP S + + +
Sbjct: 1 MYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAI 60
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
+ +L S +L+ + ++R + VF A GA+YL G V
Sbjct: 61 VCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPV 117
>gi|296331168|ref|ZP_06873642.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|296151812|gb|EFG92687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii ATCC 6633]
Length = 213
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%)
Query: 166 LYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGL 225
+Y AF H + + RL FLG VLEL F +YP S + + +
Sbjct: 1 MYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAI 60
Query: 226 IGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
+ +L S +L+ + ++R + VF A GA+YL G V
Sbjct: 61 VCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPV 117
>gi|403745343|ref|ZP_10954281.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
gi|403121571|gb|EJY55864.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
Length = 241
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Query: 151 DQLGDDNPAKHFD-TLLYLAFQHPFCERNKAR--HVRAGHSRLCFLGQFVLELAFCEFFL 207
DQL D + D LL AF H RN+ R HV + RL FLG VLEL +F
Sbjct: 6 DQLQDIVDFRFTDLNLLKQAFTHA-SYRNEHRKAHVE-DNERLEFLGDAVLELIISDFLY 63
Query: 208 QRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFW 267
YPR + ++ +L + + S + I +R + R + VF
Sbjct: 64 HTYPRLPEGELTRMRAAIVCEPSLVVFARRLSFEQFIRLGRGEERSGGRSRPALLADVFE 123
Query: 268 ALFGAIYLCFGFPEV 282
A GA+Y+ G V
Sbjct: 124 AFLGALYIDQGIEAV 138
>gi|456012685|gb|EMF46373.1| Ribonuclease III [Planococcus halocryophilus Or1]
Length = 251
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%)
Query: 164 TLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVF 223
TLLY AF H R + RL FLG VLEL+ + +YP S + +
Sbjct: 38 TLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYMKYPEMSEGELTKLRA 97
Query: 224 GLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L + I + + R + VF + GA+YL G V
Sbjct: 98 AIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVFESYIGALYLDQGLEPV 156
>gi|336395264|ref|ZP_08576663.1| ribonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 202
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRN-LPKWIKAASLQNLIF 245
+ RL FLG VLE+ + ++YP E P R+ I R + ++ K + +
Sbjct: 18 YERLEFLGDAVLEINISRYLFEKYP-ELPEGKLTRLRSDIVRTDSFARFAKEIQIDKYLL 76
Query: 246 PFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF------GMDPEDKEC 299
++ ++R ++ +F A GA+YL G V L +V G ED +
Sbjct: 77 IGKGEEKQGARQRHTLLEDIFEAFNGALYLDQGNEVVNEFLKKVVYPHIDSGEFSEDTDF 136
Query: 300 QPKLRRQLE-----DVDYVSVEFEG 319
+ L+ +L+ ++DY ++ EG
Sbjct: 137 KTHLQEKLQQSGEVEIDYKVIDEEG 161
>gi|327403887|ref|YP_004344725.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
gi|327319395|gb|AEA43887.1| Ribonuclease 3 [Fluviicola taffensis DSM 16823]
Length = 240
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 165 LLYLAFQHPFCERNKARHVRAGHS--RLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
L Y A H R+ A H + S RL FLG +L+ EF QR+P E + +
Sbjct: 36 LFYQAVTH----RSIAYHGQKDFSNERLEFLGDAILDSIIAEFLFQRFPEEDEGYLTKVK 91
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSV----FWALFGAIYLCFG 278
++ R+ L + + L++++ K R + S+ F A+ GAIYL
Sbjct: 92 SKVVSRKTLSEIGEELELRSIL--------RYNKGRSINLSSLEGNAFEAIIGAIYLDSS 143
Query: 279 FPEVYRVLF 287
+ E ++++
Sbjct: 144 YEETKKIIY 152
>gi|392988132|ref|YP_006486725.1| ribonuclease III [Enterococcus hirae ATCC 9790]
gi|392335552|gb|AFM69834.1| ribonuclease III [Enterococcus hirae ATCC 9790]
Length = 228
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 164 TLLYLAFQHPFCERNKARHVR-AGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERV 222
LL AF H N+ R+++ + + RL FLG VLEL E+ + YP + +
Sbjct: 21 NLLEQAFTHS-SYVNEHRNLQLSDNERLEFLGDAVLELMVSEYLYRLYPDIPEGKLTKTR 79
Query: 223 FGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEV 282
++ +L K+ K I + + R + +F A GA+YL GF
Sbjct: 80 AAIVREDSLSKFAKECGFDKYIMLGKGEENSGGRTRPALLCDLFEAFLGALYLDQGFEAA 139
Query: 283 YRVL 286
+ L
Sbjct: 140 HAFL 143
>gi|421187978|ref|ZP_15645319.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB419]
gi|421193202|ref|ZP_15650453.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB553]
gi|399966651|gb|EJO01171.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB419]
gi|399973184|gb|EJO07370.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB553]
Length = 231
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++L ++ RYP + E ++ ++ + + A I
Sbjct: 43 YQRLEFLGDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRL 102
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF------GMDPEDKECQ 300
+ + R+ ++ ++ A GA+Y G V+ L + F G E + +
Sbjct: 103 GKGEELSGARNRDSLLEDIWEAFIGALYKDQGTKAVFTFLNKAFFPAIDEGFFEEFIDYK 162
Query: 301 PKLRRQLEDVDYVSVEF 317
KL+ L+ V +E+
Sbjct: 163 SKLQELLQKAGSVDIEY 179
>gi|421190069|ref|ZP_15647373.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB422]
gi|399970869|gb|EJO05159.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB422]
Length = 243
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++L ++ RYP + E ++ ++ + + A I
Sbjct: 55 YQRLEFLGDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRL 114
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF------GMDPEDKECQ 300
+ + R+ ++ ++ A GA+Y G V+ L + F G E + +
Sbjct: 115 GKGEELSGARNRDSLLEDIWEAFIGALYKDQGTKAVFTFLNKAFFPAIDEGFFEEFIDYK 174
Query: 301 PKLRRQLEDVDYVSVEF 317
KL+ L+ V +E+
Sbjct: 175 SKLQELLQKAGSVDIEY 191
>gi|421192049|ref|ZP_15649318.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB548]
gi|399969996|gb|EJO04302.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB548]
Length = 231
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++L ++ RYP + E ++ ++ + + A I
Sbjct: 43 YQRLEFLGDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRL 102
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF------GMDPEDKECQ 300
+ + R+ ++ ++ A GA+Y G V+ L + F G E + +
Sbjct: 103 GKGEELSGARNRDSLLEDIWEAFIGALYKDQGTKAVFTFLNKAFFPAIDEGFFEEFIDYK 162
Query: 301 PKLRRQLEDVDYVSVEF 317
KL+ L+ V +E+
Sbjct: 163 SKLQELLQKAGSVDIEY 179
>gi|421186072|ref|ZP_15643467.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB418]
gi|399967716|gb|EJO02182.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB418]
Length = 231
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++L ++ RYP + E ++ ++ + + A I
Sbjct: 43 YQRLEFLGDSVMQLIVADYLFTRYPDWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRL 102
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF------GMDPEDKECQ 300
+ + R+ ++ ++ A GA+Y G V+ L + F G E + +
Sbjct: 103 GKGEELSGARNRDSLLEDIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFFEEFIDYK 162
Query: 301 PKLRRQLEDVDYVSVEF 317
KL+ L+ V +E+
Sbjct: 163 SKLQELLQKAGSVDIEY 179
>gi|116490531|ref|YP_810075.1| ribonuclease III [Oenococcus oeni PSU-1]
gi|290889932|ref|ZP_06553019.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
gi|419757837|ref|ZP_14284162.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB304]
gi|419858989|ref|ZP_14381646.1| dsRNA-specific ribonuclease [Oenococcus oeni DSM 20252 = AWRIB129]
gi|122277282|sp|Q04GL2.1|RNC_OENOB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116091256|gb|ABJ56410.1| RNAse III [Oenococcus oeni PSU-1]
gi|290480542|gb|EFD89179.1| hypothetical protein AWRIB429_0409 [Oenococcus oeni AWRIB429]
gi|399905346|gb|EJN92789.1| dsRNA-specific ribonuclease [Oenococcus oeni AWRIB304]
gi|410497350|gb|EKP88824.1| dsRNA-specific ribonuclease [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 231
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 187 HSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFP 246
+ RL FLG V++L ++ RYP + E ++ ++ + + A I
Sbjct: 43 YQRLEFLGDSVMQLIVADYLFTRYPAWEEGQLTEMRIAMVQSKSFSHFARLAGFNRYIRL 102
Query: 247 FDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF------GMDPEDKECQ 300
+ + R+ ++ ++ A GA+Y G V+ L + F G E + +
Sbjct: 103 GKGEELSGARNRDSLLEDIWEAFIGALYKDQGAKAVFTFLNKAFFPAIDEGFFEEFIDYK 162
Query: 301 PKLRRQLEDVDYVSVEF 317
KL+ L+ V +E+
Sbjct: 163 SKLQELLQKAGSVDIEY 179
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,565,092,171
Number of Sequences: 23463169
Number of extensions: 233445195
Number of successful extensions: 583038
Number of sequences better than 100.0: 421
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 352
Number of HSP's that attempted gapping in prelim test: 582724
Number of HSP's gapped (non-prelim): 452
length of query: 353
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 210
effective length of database: 9,003,962,200
effective search space: 1890832062000
effective search space used: 1890832062000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)