Query 018589
Match_columns 353
No_of_seqs 309 out of 1537
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0571 Rnc dsRNA-specific rib 100.0 1.4E-44 3E-49 338.7 17.4 186 134-346 6-203 (235)
2 PRK12371 ribonuclease III; Rev 100.0 1.8E-42 3.8E-47 325.2 17.9 181 134-343 10-200 (235)
3 PRK14718 ribonuclease III; Pro 100.0 1.3E-41 2.8E-46 339.0 16.7 175 137-343 4-190 (467)
4 PRK12372 ribonuclease III; Rev 100.0 2.7E-41 6E-46 334.7 17.0 176 136-343 3-190 (413)
5 PRK00102 rnc ribonuclease III; 100.0 4.7E-38 1E-42 291.8 17.0 183 135-344 4-198 (229)
6 TIGR02191 RNaseIII ribonucleas 100.0 3.6E-37 7.9E-42 283.6 15.6 181 139-345 1-193 (220)
7 PF14622 Ribonucleas_3_3: Ribo 100.0 1.2E-32 2.7E-37 235.6 9.9 126 163-293 2-127 (128)
8 smart00535 RIBOc Ribonuclease 100.0 7.6E-30 1.6E-34 216.1 11.8 126 165-295 2-127 (129)
9 cd00593 RIBOc RIBOc. Ribonucle 100.0 5.6E-29 1.2E-33 211.1 11.4 128 165-295 2-129 (133)
10 KOG1817 Ribonuclease [RNA proc 99.9 5.1E-28 1.1E-32 238.7 12.1 181 137-345 276-474 (533)
11 PF00636 Ribonuclease_3: Ribon 99.9 3.4E-24 7.4E-29 178.2 6.7 91 188-278 1-114 (114)
12 KOG1817 Ribonuclease [RNA proc 99.6 5.5E-16 1.2E-20 153.9 7.7 144 134-290 41-235 (533)
13 KOG3769 Ribonuclease III domai 99.6 7.3E-15 1.6E-19 140.3 11.8 188 130-343 58-272 (333)
14 KOG0701 dsRNA-specific nucleas 99.5 1E-14 2.3E-19 164.1 9.4 147 137-295 982-1188(1606)
15 KOG0701 dsRNA-specific nucleas 99.2 4.1E-12 9E-17 143.5 4.0 128 135-278 1370-1518(1606)
16 COG1939 Ribonuclease III famil 98.1 1.6E-05 3.4E-10 68.3 8.1 100 186-290 14-127 (132)
17 PHA02701 ORF020 dsRNA-binding 96.2 0.0067 1.5E-07 55.4 4.9 41 293-345 107-148 (183)
18 PHA03103 double-strand RNA-bin 94.2 0.078 1.7E-06 48.6 5.1 39 293-344 108-147 (183)
19 smart00358 DSRM Double-strande 92.9 0.19 4.2E-06 36.8 4.5 36 296-343 1-37 (67)
20 cd00048 DSRM Double-stranded R 92.6 0.21 4.5E-06 36.5 4.2 37 295-343 1-39 (68)
21 PF14709 DND1_DSRM: double str 89.8 0.44 9.5E-06 37.8 3.8 41 297-349 4-46 (80)
22 PF11469 Ribonucleas_3_2: Ribo 88.7 1.6 3.6E-05 36.6 6.4 87 189-294 2-92 (120)
23 KOG3732 Staufen and related do 78.9 2.1 4.6E-05 42.7 3.7 43 294-348 142-188 (339)
24 KOG3732 Staufen and related do 76.9 2.8 6E-05 41.9 3.8 34 299-344 44-77 (339)
25 PF00035 dsrm: Double-stranded 76.1 3 6.6E-05 30.5 3.0 35 297-343 2-38 (67)
26 PRK02287 hypothetical protein; 45.1 22 0.00049 32.3 3.2 27 263-289 107-133 (171)
27 COG2042 Uncharacterized conser 31.9 46 0.001 30.4 3.0 28 262-289 114-141 (179)
28 PF08383 Maf_N: Maf N-terminal 31.1 21 0.00045 24.2 0.5 11 262-272 25-35 (35)
29 PF04034 DUF367: Domain of unk 30.5 49 0.0011 28.8 2.9 28 262-289 65-92 (127)
30 PF03672 UPF0154: Uncharacteri 20.3 2.4E+02 0.0052 21.7 4.6 36 190-225 5-44 (64)
No 1
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=1.4e-44 Score=338.69 Aligned_cols=186 Identities=24% Similarity=0.305 Sum_probs=173.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCC
Q 018589 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (353)
Q Consensus 134 ~~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~ 213 (353)
..+..+++.+||.|+| ++||.+||||+||.+++. ...||||||||||+||+++|+++||++||+.
T Consensus 6 ~~~~~l~~~lg~~f~~-------------~~lL~~AltH~S~~~e~~--~~~~nERLEFLGDavL~l~vae~Lf~~yP~~ 70 (235)
T COG0571 6 KKLEALEKKLGYTFKD-------------KELLEQALTHRSYANEHK--AVENNERLEFLGDAVLGLVVAEYLFKKYPNL 70 (235)
T ss_pred HHHHHHHHHhCCCcCC-------------HHHHHHHhcCcchhcccc--CCcchHHHHhhHHHHHHHHHHHHHHHHCCCC
Confidence 3567899999999999 899999999999998642 5679999999999999999999999999999
Q ss_pred ChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Q 018589 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293 (353)
Q Consensus 214 ~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~ 293 (353)
+||.||.+|+.+||+..|+.+|+.+||++||+.++|+...+++.+++++||+|||+|||||+|+|++.|++|+.++|.+.
T Consensus 71 ~EG~Ls~~ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g~~~~~~~i~~l~~~~ 150 (235)
T COG0571 71 PEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLFLPR 150 (235)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCccchhhccCChhhcCCCCchhHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998544
Q ss_pred ----------CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEeeecc
Q 018589 294 ----------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTNKT 346 (353)
Q Consensus 294 ----------id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~~~ 346 (353)
.|+|+ ||||+|++ +..|.|+++.++| |+|+..|++.|.-..
T Consensus 151 ~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g------------~~h~~~F~v~v~v~~ 203 (235)
T COG0571 151 LEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEG------------PAHDKEFTVEVAVGG 203 (235)
T ss_pred HhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccC------------CCCCceEEEEEEECC
Confidence 34888 99999999 8889999999999 999999999997654
No 2
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=1.8e-42 Score=325.20 Aligned_cols=181 Identities=20% Similarity=0.163 Sum_probs=164.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCC
Q 018589 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRE 213 (353)
Q Consensus 134 ~~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~ 213 (353)
+.+..++++|||+|+| +.||.+||||+||.+. ...||||||||||+||+++|+++||.+||++
T Consensus 10 ~~~~~le~~lgy~F~~-------------~~Ll~~AlTH~S~~~~----~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~ 72 (235)
T PRK12371 10 ATASILEERTGHRFAN-------------KERLERALTHSSARAS----KQGNYERLEFLGDRVLGLCVAEMLFEAFPDA 72 (235)
T ss_pred HHHHHHHHHHCCCCCC-------------HHHHHHHHcCcCcccC----CccchHhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4567899999999999 8999999999999763 2358999999999999999999999999999
Q ss_pred ChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCC-
Q 018589 214 SPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM- 292 (353)
Q Consensus 214 ~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~- 292 (353)
++|.||.+|+.+|||.+|+.+|.++||++||+.+.+.....++..++++||+|||+|||||+|+|++.|++|+.+++.+
T Consensus 73 ~eG~Lt~~rs~lV~n~~La~ia~~lgL~~~i~~~~~~~~~~~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~~~~~ 152 (235)
T PRK12371 73 SEGELSVRLNQLVNAETCAAIADEIGLHDLIRTGSDVKKLTGKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRYWQKR 152 (235)
T ss_pred CHHHHHHHHHHHhChHHHHHHHHHCCcHHHhccCcchhhcCCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998876555555568999999999999999999999999999998743
Q ss_pred -------CCCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 -------DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 -------~id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|||+ ||||||++ ...|.|++++++| |.|...|.+.|.
T Consensus 153 ~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~G------------p~h~~~F~v~v~ 200 (235)
T PRK12371 153 ALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSG------------PDHDPRFTVEVE 200 (235)
T ss_pred HhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeec------------CCCCCeEEEEEE
Confidence 236899 99999987 7789999999999 899999999985
No 3
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=1.3e-41 Score=338.98 Aligned_cols=175 Identities=21% Similarity=0.215 Sum_probs=161.9
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChh
Q 018589 137 LEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPA 216 (353)
Q Consensus 137 ~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg 216 (353)
..|+++|||+|+| ..||.+||||+||.+ .||||||||||+||+++|+++||++||++++|
T Consensus 4 ~~LEkrLGY~Fkn-------------~~LL~eALTH~Sys~-------e~NERLEFLGDAVL~liVse~Lf~~fPdl~EG 63 (467)
T PRK14718 4 SQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDEG 63 (467)
T ss_pred HHHHHHhCCCcCC-------------HHHHHHHHhccCcCc-------ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 4689999999999 899999999999965 48999999999999999999999999999999
Q ss_pred hHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC---
Q 018589 217 PMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD--- 293 (353)
Q Consensus 217 ~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~--- 293 (353)
.||.+|+.+|||.+|+.+|+++||++||+.+.++...++..++++++|+|||||||||+|+|++.|+.||.++|.+.
T Consensus 64 eLT~LRS~LVSnetLA~IAr~LGL~d~Lrlg~gE~~sgG~~~~sILADvFEALIGAIYLDsG~e~a~~fI~~ll~p~i~~ 143 (467)
T PRK14718 64 DLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILDH 143 (467)
T ss_pred HHHHHHHHHhhhHHHHHHHHHcCchHHHhhCCcccccCCCCChhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998876666666799999999999999999999999999999887422
Q ss_pred -------CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 -------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 -------id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|+|+ ||||||++ ...|+|++++++| |.|...|.+.|.
T Consensus 144 ~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esG------------PdH~k~F~V~V~ 190 (467)
T PRK14718 144 IDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHG------------AAHNQQFEVECT 190 (467)
T ss_pred hcccccccCHHHHHHHHHHhcCCCCCeeEEeeeec------------CCCCCeEEEEEE
Confidence 35888 99999999 6779999999999 999999999995
No 4
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=2.7e-41 Score=334.71 Aligned_cols=176 Identities=22% Similarity=0.226 Sum_probs=162.0
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 018589 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (353)
Q Consensus 136 l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~e 215 (353)
+..|+++|||+|+| +.||.+||||+||.+ .+|||||||||+||+++|+++||++||++++
T Consensus 3 l~~LEk~LGY~Fkn-------------~~LL~eALTH~Sy~~-------~~NERLEFLGDAVL~liVse~Lf~~fP~~~E 62 (413)
T PRK12372 3 LSQLESRLRYEFRN-------------AELLRQALTHRSHSA-------THNERLEFLGDSVLNCAVAALLFQRFGKLDE 62 (413)
T ss_pred HHHHHHHhCCCcCC-------------HHHHHHHHhcccccc-------ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34689999999999 899999999999865 4899999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCC---
Q 018589 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM--- 292 (353)
Q Consensus 216 g~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~--- 292 (353)
|.||.+|+.+|||.+|+.+|.++||.+||+.+.++...++..++++++|+|||||||||+|+|++.|+.||.++|.+
T Consensus 63 G~LT~lRS~LVsn~tLA~IA~~LgL~~~Lrlg~ge~~sgg~~~~kILADvfEALIGAIYLDsG~e~a~~fV~~ll~p~l~ 142 (413)
T PRK12372 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGGFEAAQGVIKRLYVPILD 142 (413)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHcCchHhhhcCcchhhcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887666666679999999999999999999999999999988642
Q ss_pred -------CCCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 -------DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 -------~id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|+|+ ||||||++ ...|+|++++++| |.|+..|.+.|.
T Consensus 143 ~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~G------------p~h~~~F~V~V~ 190 (413)
T PRK12372 143 HIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHG------------AAHNQQFEVECT 190 (413)
T ss_pred hcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeec------------CCCCceEEEEEE
Confidence 236888 99999998 6779999999999 999999999995
No 5
>PRK00102 rnc ribonuclease III; Reviewed
Probab=100.00 E-value=4.7e-38 Score=291.78 Aligned_cols=183 Identities=25% Similarity=0.317 Sum_probs=161.4
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 018589 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (353)
Q Consensus 135 ~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~ 214 (353)
.+..++++|||+|++ +.|+.+||||+||.+. .+...+|||||||||+||+++++++||.+||+.+
T Consensus 4 ~~~~l~~~lg~~f~~-------------~~ll~~Alth~S~~~~--~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~ 68 (229)
T PRK00102 4 DLEELQKKLGYTFKD-------------PELLIQALTHRSYANE--NKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLD 68 (229)
T ss_pred hHHHHHHHhCCCCCC-------------HHHHHHHhCccchhcc--CCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457799999999999 8999999999999653 1346799999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC-
Q 018589 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD- 293 (353)
Q Consensus 215 eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~- 293 (353)
+|.|+.+|+.+|||++|+.+|.++||++||+++++.....+..+++++||+|||+|||||+|+|++.|++|+.+++.+.
T Consensus 69 ~g~l~~~~~~lvsn~~la~~a~~lgl~~~i~~~~~~~~~~~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~~l 148 (229)
T PRK00102 69 EGDLSKLRAALVREESLAEIARELGLGEYLLLGKGEEKSGGRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEPRI 148 (229)
T ss_pred hhHHHHHHHHHhCHHHHHHHHHHCCcHHHHccCcHHHHcCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987654444445689999999999999999999999999999887443
Q ss_pred ---------CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 294 ---------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 294 ---------id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
.+||+ |+|+||+. ...|+|++++++| +.|.+.|+++|.=
T Consensus 149 ~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g------------~~~~~~f~~~v~i 198 (229)
T PRK00102 149 EEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEG------------PAHDKEFTVEVTV 198 (229)
T ss_pred HhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccC------------CCCCceEEEEEEE
Confidence 24778 99999988 5679999999999 7778888888764
No 6
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=100.00 E-value=3.6e-37 Score=283.64 Aligned_cols=181 Identities=21% Similarity=0.276 Sum_probs=159.1
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhH
Q 018589 139 AKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPM 218 (353)
Q Consensus 139 l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~L 218 (353)
++++|||+|++ ++|+.+||||+||.+.. .....+|||||||||+||++++++++|.+||+.++|.|
T Consensus 1 ~e~~lgy~F~~-------------~~ll~~Alth~S~~~~~-~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l 66 (220)
T TIGR02191 1 LEKRLGYKFKN-------------KELLEQALTHSSYANEH-HKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGEL 66 (220)
T ss_pred ChHHhCCCcCC-------------HHHHHHHhcCccccccc-ccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH
Confidence 47899999999 89999999999997632 12356999999999999999999999999999999999
Q ss_pred HHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCC----
Q 018589 219 RERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP---- 294 (353)
Q Consensus 219 t~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~i---- 294 (353)
+.+|+.+|||.+|+.+|.++||+++|+++++.....++..++++||+|||+|||||+|+|++.|++|+.+++.+.+
T Consensus 67 ~~~~~~lvsn~~la~~a~~~gl~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~~~~~ 146 (220)
T TIGR02191 67 SKLRAALVSEESLAEVARELGLGKFLLLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKFILKLLIPRIDAIE 146 (220)
T ss_pred HHHHHHHhCHHHHHHHHHHCCcHHHhccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999876554444556899999999999999999999999999998875442
Q ss_pred ------CCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEeeec
Q 018589 295 ------EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTNK 345 (353)
Q Consensus 295 ------d~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~~ 345 (353)
+||+ |+|+||++ ...|.|+++.+.| ++|.+.|.+.|.-.
T Consensus 147 ~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g------------~~~~~~f~~~v~~~ 193 (220)
T TIGR02191 147 KEETLKDYKTALQEWAQARGKPLPEYRLIKEEG------------PDHDKEFTVEVSVN 193 (220)
T ss_pred cccccCChHHHHHHHHHHcCCCCceEEEecccC------------CCCCceEEEEEEEC
Confidence 3777 99999987 5579999998888 77888888888753
No 7
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.98 E-value=1.2e-32 Score=235.64 Aligned_cols=126 Identities=27% Similarity=0.342 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCcc
Q 018589 163 DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN 242 (353)
Q Consensus 163 ~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~ 242 (353)
++|+.+||||+||.++ ...+|||||||||+||++++++++|+++| .++|.++..|+.+|++++|+.+|.++||++
T Consensus 2 ~~Ll~~alTH~S~~~~----~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~ 76 (128)
T PF14622_consen 2 DELLLQALTHKSYAHE----RKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDK 76 (128)
T ss_dssp HHHHHHHTB-HHHHHH----TCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGG
T ss_pred HHHHHHHhcCcccccc----ccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHH
Confidence 6899999999999763 34799999999999999999999999955 489999999999999999999999999999
Q ss_pred ccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Q 018589 243 LIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMD 293 (353)
Q Consensus 243 ~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~ 293 (353)
+|+++.+......+..++++||+|||+|||||+|+|+++|++|+.+++.+.
T Consensus 77 ~i~~~~~~~~~~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~i~~~ 127 (128)
T PF14622_consen 77 LIRWGPGEEKSGGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKLILPR 127 (128)
T ss_dssp C-B--HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---
T ss_pred HHHhCccHhhcCCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHHhccc
Confidence 999987666555666789999999999999999999999999999988653
No 8
>smart00535 RIBOc Ribonuclease III family.
Probab=99.96 E-value=7.6e-30 Score=216.13 Aligned_cols=126 Identities=27% Similarity=0.363 Sum_probs=114.5
Q ss_pred HHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCcccc
Q 018589 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (353)
Q Consensus 165 LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I 244 (353)
+|.+|||||||... ..+|||||||||+||+++++++++.+||+.++|.|+.+++.+|||++|+.+|.++||++++
T Consensus 2 ll~~alth~s~~~~-----~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i 76 (129)
T smart00535 2 LLLRALTHASYSNE-----HEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFI 76 (129)
T ss_pred HHHHHhhccccccc-----CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHH
Confidence 78999999999752 2699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCC
Q 018589 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~id 295 (353)
+.+.......+...+|++||+|||+|||||+|+|++.|.+|+.+++.+.++
T Consensus 77 ~~~~~~~~~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~~~~~~~~ 127 (129)
T smart00535 77 RLGRGEAISGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRDLLGPRLE 127 (129)
T ss_pred ccCchHhhcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 988765433344578999999999999999999999999999999877655
No 9
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.96 E-value=5.6e-29 Score=211.05 Aligned_cols=128 Identities=29% Similarity=0.404 Sum_probs=114.4
Q ss_pred HHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCcccc
Q 018589 165 LLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLI 244 (353)
Q Consensus 165 LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I 244 (353)
++.+||||+||... ....+|||||||||+||+++++++++..+|+.++|.++.+++.+|||++|+.+|.++||++++
T Consensus 2 ll~~alth~s~~~~---~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i 78 (133)
T cd00593 2 LLLEALTHPSYANE---HGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYL 78 (133)
T ss_pred HHHHhhcCcccccc---CCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHh
Confidence 78999999999763 124799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCC
Q 018589 245 FPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDPE 295 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~id 295 (353)
+.++..........+|++||+|||+|||||+|+|.+.|.+|+.+++.+.++
T Consensus 79 ~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~~~~~~ 129 (133)
T cd00593 79 RLGKGEEKSGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRLLGPLIE 129 (133)
T ss_pred ccCchHhhcCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 998765433334568999999999999999999999999999998765543
No 10
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.95 E-value=5.1e-28 Score=238.66 Aligned_cols=181 Identities=17% Similarity=0.139 Sum_probs=154.3
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChh
Q 018589 137 LEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPA 216 (353)
Q Consensus 137 ~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg 216 (353)
.++++++|..|.. ..++.+|||-.|-...+ -...+|||||||||+||+++++++||.+||+.+||
T Consensus 276 ~~~e~~~g~vF~H-------------irlla~aft~rs~~~n~--Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEG 340 (533)
T KOG1817|consen 276 TQFEEIIGIVFIH-------------IRLLARAFTLRSIPFNH--LTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEG 340 (533)
T ss_pred hhHHHHHHHHHHH-------------HHHHHHHhhccCCCchh--hhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccc
Confidence 5678999999998 89999999999865321 23468999999999999999999999999999999
Q ss_pred hHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCC--
Q 018589 217 PMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP-- 294 (353)
Q Consensus 217 ~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~i-- 294 (353)
.|+.+|+.+|||++.+.||..+|+++++..+..... ....+.|.+||+|||+|||+|+|.|++.|+.|+..++.|.+
T Consensus 341 hLSlLRssLVsNetqakva~~lgf~e~li~n~~~k~-~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~Prl~~ 419 (533)
T KOG1817|consen 341 HLSLLRSSLVSNETQAKVADDLGFHEYLITNFDLKD-FQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFPRLKE 419 (533)
T ss_pred hHHHHHHHHhccHHHHHHHHHhCCchhhhhCcchhh-hhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999998764322 22345899999999999999999999999999999987765
Q ss_pred --------CCCc-HHHHHhcc----CC---CcceEEEeeecCccccchhhhhccCccceeEEEeeec
Q 018589 295 --------EDKE-CQPKLRRQ----LE---DVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTNK 345 (353)
Q Consensus 295 --------d~K~-Lqe~lq~~----~~---~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~~ 345 (353)
|+|+ ||++|-.+ .. -|.|++....| |.+++.++|.|-=+
T Consensus 420 fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~g------------pa~~r~y~Vavyf~ 474 (533)
T KOG1817|consen 420 FIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKG------------PANDRNYKVAVYFK 474 (533)
T ss_pred HHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccC------------CCCCCceEEEEEEC
Confidence 3788 99998655 12 25577778888 88999999888543
No 11
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.90 E-value=3.4e-24 Score=178.22 Aligned_cols=91 Identities=26% Similarity=0.343 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhh--------------
Q 018589 188 SRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-------------- 253 (353)
Q Consensus 188 ERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~-------------- 253 (353)
||||||||+||+++++++||.+||+.++|.|+.+|+.+|||++|+.+|.++||++|++........
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999999999999999999999999999999999999853221110
Q ss_pred ---------cccCCCchHHHHHHHHHHHHHHhcC
Q 018589 254 ---------IRKEREPPVKSVFWALFGAIYLCFG 278 (353)
Q Consensus 254 ---------~~~~~~KvlADvfEALIGAIYlDsG 278 (353)
.....+|++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0111379999999999999999998
No 12
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.62 E-value=5.5e-16 Score=153.92 Aligned_cols=144 Identities=24% Similarity=0.328 Sum_probs=122.0
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccc---c---------------c--------------
Q 018589 134 EYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNK---A---------------R-------------- 181 (353)
Q Consensus 134 ~~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~---~---------------~-------------- 181 (353)
..+..+++.|||+|+| ..+|+.|+||||+...- . +
T Consensus 41 ~~l~~~e~~i~y~f~~-------------r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~~ 107 (533)
T KOG1817|consen 41 QSLDHLEELIGYTFQD-------------RCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRKL 107 (533)
T ss_pred HhHHHHHHHhCeeecc-------------hHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHHh
Confidence 4578899999999999 79999999999985210 0 0
Q ss_pred -------------------ccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCcc
Q 018589 182 -------------------HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQN 242 (353)
Q Consensus 182 -------------------~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~ 242 (353)
....+|||||||||++.+++++.++|-.+|...+|.|...|+++|.|+.++.+++++.++.
T Consensus 108 gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~ 187 (533)
T KOG1817|consen 108 GINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDE 187 (533)
T ss_pred hhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 0135799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHh
Q 018589 243 LIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (353)
Q Consensus 243 ~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l 290 (353)
|+....|.+.....+-...++++|||+|||+|+|+|..++...+.+.+
T Consensus 188 fl~yahg~dl~~~~E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~ 235 (533)
T KOG1817|consen 188 FLLYAHGYDLCFETELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRAL 235 (533)
T ss_pred HHHHhcCcchhhHHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHh
Confidence 998665444332223357899999999999999999999988887765
No 13
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=7.3e-15 Score=140.34 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=149.2
Q ss_pred hhhHHH-HHHHHHHhC-CCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccc-----------c--ccCCCchhHHHHH
Q 018589 130 TWIDEY-LLEAKQALG-YSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKA-----------R--HVRAGHSRLCFLG 194 (353)
Q Consensus 130 ~w~~~~-l~~l~~~LG-y~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~-----------~--~~~~nyERLEFLG 194 (353)
.|..+. +..+.++|| -.|. .+.+..|||.+||..... . ....+|+-|--.|
T Consensus 58 ~W~~~sel~afg~RL~~~~is--------------~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~G 123 (333)
T KOG3769|consen 58 NWDYNSELSAFGKRLQSEEIS--------------LSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIG 123 (333)
T ss_pred CcchhHHHHHHHHHhcccccc--------------HHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHH
Confidence 465554 788999999 4444 589999999999865321 0 2457899999999
Q ss_pred HHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHH
Q 018589 195 QFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIY 274 (353)
Q Consensus 195 DaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIY 274 (353)
..+++++|.+||-++||++++..++.+.+.+++.+.||.+|..+|+.++++...-... +.....+...+++=|++|+++
T Consensus 124 k~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~-~eisq~ess~~aI~Al~~~~~ 202 (333)
T KOG3769|consen 124 KQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV-GEISQDESSRRAIGALLGSVG 202 (333)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc-hhhhHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999998876543211 111124678889999999999
Q ss_pred HhcChHHHHHHHHHHh-CCCCC---------CCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEe
Q 018589 275 LCFGFPEVYRVLFEVF-GMDPE---------DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSV 342 (353)
Q Consensus 275 lDsG~e~v~~fv~~~l-~~~id---------~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~ 342 (353)
...|+..|++|+.+++ ..++| |-. |.++|+++ ...|+++++.++| +....++|+|-+
T Consensus 203 ~ek~~~~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esG-----------r~S~~PvyvVgi 271 (333)
T KOG3769|consen 203 LEKGFNFVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESG-----------RNSAEPVYVVGI 271 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhc-----------cCccCceEEEEe
Confidence 9999999999998876 44555 222 77789888 7889999999999 345566777665
Q ss_pred e
Q 018589 343 T 343 (353)
Q Consensus 343 ~ 343 (353)
.
T Consensus 272 Y 272 (333)
T KOG3769|consen 272 Y 272 (333)
T ss_pred e
Confidence 4
No 14
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.54 E-value=1e-14 Score=164.06 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=116.1
Q ss_pred HHHHHHhC--CCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 018589 137 LEAKQALG--YSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (353)
Q Consensus 137 ~~l~~~LG--y~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~ 214 (353)
+.++.++. |.|.++ ++.|-- -..+|++|||+.+|.. ..++||||+|||++|+++++.+||.+||+..
T Consensus 982 E~~e~i~n~~~~Fs~~--~~~i~~---~~s~LLEAlT~~~~~~------s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~ 1050 (1606)
T KOG0701|consen 982 EAVEKILNFRYVFSIS--LASIAL---STSLLLEALTTSSCQD------SFSLERLELLGDSLLKLAVSRHLFLTYPDLD 1050 (1606)
T ss_pred cccccccccceecccc--cccccc---chhHHHHHhhcCcccc------chhHHHHHhhHHHHHHHHHHHHHHHhCCccc
Confidence 55677777 999881 111000 0189999999999975 5899999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhh---------------------------------h--------
Q 018589 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDR---------------------------------L-------- 253 (353)
Q Consensus 215 eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~---------------------------------~-------- 253 (353)
||+++.+|..++++.+|+.+|...||..+++.+..+.. .
T Consensus 1051 Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~ 1130 (1606)
T KOG0701|consen 1051 EGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAME 1130 (1606)
T ss_pred chhHHHHHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhh
Confidence 99999999999999999999999999999986510000 0
Q ss_pred ---------c---ccCCCchHHHHHHHHHHHHHHhcChHHHH-----HHHHHHhCCCCC
Q 018589 254 ---------I---RKEREPPVKSVFWALFGAIYLCFGFPEVY-----RVLFEVFGMDPE 295 (353)
Q Consensus 254 ---------~---~~~~~KvlADvfEALIGAIYlDsG~e~v~-----~fv~~~l~~~id 295 (353)
. ....+|.++|++||++||+|+|+|+.... .++. |.+...|
T Consensus 1131 ~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk-~~~~~~d 1188 (1606)
T KOG0701|consen 1131 KEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLK-WSITNYD 1188 (1606)
T ss_pred ccCCcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHh-hhhhhhh
Confidence 0 11248999999999999999999988655 5554 5544444
No 15
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.23 E-value=4.1e-12 Score=143.45 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=111.1
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 018589 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (353)
Q Consensus 135 ~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~ 214 (353)
.+..+++.+||.|.. ..++.+|+||-||... ....+|+|||||||+|+++.++++++...+..+
T Consensus 1370 ~~~~~e~~l~y~f~~-------------~~~l~~a~th~s~~~~---~~~~C~qrleflgd~vld~~it~hl~~~~~~~s 1433 (1606)
T KOG0701|consen 1370 SFGKFEEKLNYRFKL-------------KPYLTQATTHASYIYN---RITDCYQRLEFLGDAVLDYLITKHLYEDPRQHS 1433 (1606)
T ss_pred HHHhhhcccchhhhh-------------hhcccccccccccccC---ccchhhhhHHHhHHhhhhhhhhhcccccccccC
Confidence 467789999999999 6899999999999764 456799999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhh-----------h----------hcccCCCchHHHHHHHHHHHH
Q 018589 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMD-----------R----------LIRKEREPPVKSVFWALFGAI 273 (353)
Q Consensus 215 eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~-----------~----------~~~~~~~KvlADvfEALIGAI 273 (353)
+|.++.+++++|+|.-.+.+|.+.+++++++...... . ......+|+++|++|++.|||
T Consensus 1434 p~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~esiagai 1513 (1606)
T KOG0701|consen 1434 PGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFESIAGAI 1513 (1606)
T ss_pred chhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhccccee
Confidence 9999999999999999999999999999987532100 0 001245999999999999999
Q ss_pred HHhcC
Q 018589 274 YLCFG 278 (353)
Q Consensus 274 YlDsG 278 (353)
|+|+|
T Consensus 1514 ~~dsg 1518 (1606)
T KOG0701|consen 1514 KLDSG 1518 (1606)
T ss_pred ecCcc
Confidence 99999
No 16
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=98.08 E-value=1.6e-05 Score=68.35 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=72.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhc--c-----cCC
Q 018589 186 GHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLI--R-----KER 258 (353)
Q Consensus 186 nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~--~-----~~~ 258 (353)
|==-|+|+||||+++.|-.|+...+- -.+..||..-.+.||.+.-|.+-..+- +++. ..+.... | ...
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~-~k~~~lH~~a~~~VsAk~QA~il~~~~--~~Lt--e~E~~I~KRgRNaks~T~ 88 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGK-TKPNDLHKRATAYVSAKAQALILKALL--EFLT--EEEEEIVKRGRNAKSGTK 88 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhccc-CChHHHHHHHHHHhhHHHHHHHHHHHH--HHhh--HHHHHHHHHhcccccCCC
Confidence 33579999999999999999998743 368999999999999998887765431 2221 1111100 0 011
Q ss_pred Cc-------hHHHHHHHHHHHHHHhcChHHHHHHHHHHh
Q 018589 259 EP-------PVKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (353)
Q Consensus 259 ~K-------vlADvfEALIGAIYlDsG~e~v~~fv~~~l 290 (353)
+| -.+.-|||+||.+|+..-.+....++...+
T Consensus 89 ~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~i 127 (132)
T COG1939 89 PKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKVI 127 (132)
T ss_pred CCCCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 368899999999999999988888877665
No 17
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=96.23 E-value=0.0067 Score=55.39 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=35.4
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeeec
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTNK 345 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~~ 345 (353)
..|||+ ||||+|++.....|++++++| |+|.+.|.+.|.=.
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~G------------pdH~~~Ftv~V~V~ 148 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSGG------------HDHCPLFTCTIVVS 148 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeEC------------CCCCceEEEEEEEC
Confidence 568999 999999994444899999999 99999999998643
No 18
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=94.23 E-value=0.078 Score=48.60 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=31.5
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
..|||+ ||||+|++.... |..+.++| |+|.+.|.++|.=
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~-y~~i~~~G------------p~H~p~F~v~V~I 147 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW-SINITSSG------------PSHSPTFTASVII 147 (183)
T ss_pred cCChhHHHHHHHHHhCCCe-EEEEEeeC------------CCCCceEEEEEEE
Confidence 346789 999999984444 77788899 9999999998863
No 19
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=92.91 E-value=0.19 Score=36.76 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=29.7
Q ss_pred CCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 296 DKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 296 ~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
|++ |+|+||+++..|.|+..+..| +.|...|.+.|.
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g------------~~~~~~f~~~v~ 37 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEG------------PDHAPRFTVTVK 37 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeC------------CCCCCcEEEEEE
Confidence 567 999999985589999998888 777778887774
No 20
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=92.57 E-value=0.21 Score=36.47 Aligned_cols=37 Identities=24% Similarity=0.116 Sum_probs=30.3
Q ss_pred CCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 295 EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 295 d~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
||++ |+|+||++ ...|.|..+...| +.|...|...|.
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g------------~~~~~~f~~~v~ 39 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEG------------PDHAPRFTVEVT 39 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeC------------CCCCCeEEEEEE
Confidence 3677 99999998 7889999988888 777778777663
No 21
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=89.83 E-value=0.44 Score=37.79 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=36.1
Q ss_pred Cc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEeeeccccc
Q 018589 297 KE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTNKTENN 349 (353)
Q Consensus 297 K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~~~~~~ 349 (353)
+. |.|+|+++ -..|.|.+..+.| |+|..+|+-.|...+.+.
T Consensus 4 ~~~L~elC~k~~W~~P~y~l~~~~G------------p~~~~~F~ykV~i~~~~~ 46 (80)
T PF14709_consen 4 VSLLNELCQKNKWGPPVYELVSESG------------PDHRKLFLYKVVIPGLEY 46 (80)
T ss_pred HHHHHHHHHhcCCCCCeEEEEeccC------------CCccEEEEEEEEEcCCCC
Confidence 34 99999998 7889999999999 999999999999877654
No 22
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=88.66 E-value=1.6 Score=36.61 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHh--hCCCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHH
Q 018589 189 RLCFLGQFVLELAFCEFFLQ--RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVF 266 (353)
Q Consensus 189 RLEFLGDaVL~lvvs~~Lf~--~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvf 266 (353)
.|.-+||++++++++-.|-. -+|. | .-|-|..|+-.-...||.+.+...-+ ...-+|..
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~Pt---g-------~rVPnaSLaiAl~~a~L~~~~~PR~d---------kh~kGd~a 62 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRPT---G-------DRVPNASLAIALELAGLSHLLPPRTD---------KHGKGDIA 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--CGG---------CCGHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCCC---C-------CCCCChHHHHHHHHHhhhhhCccccc---------ccCccHHH
Confidence 47889999999998887754 3342 2 24677888877788888888764321 23449999
Q ss_pred HHHHHHHHHhcC--hHHHHHHHHHHhCCCC
Q 018589 267 WALFGAIYLCFG--FPEVYRVLFEVFGMDP 294 (353)
Q Consensus 267 EALIGAIYlDsG--~e~v~~fv~~~l~~~i 294 (353)
||+|+-.|+.+- .+++-+++..-+.+++
T Consensus 63 EA~iAyAWLeg~it~eEaveil~~nl~~dv 92 (120)
T PF11469_consen 63 EALIAYAWLEGKITIEEAVEILKANLTEDV 92 (120)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHCT--GGG
T ss_pred HHHHHHHHHhccccHHHHHHHHHhcCchhh
Confidence 999999999986 4577777776665443
No 23
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=78.91 E-value=2.1 Score=42.66 Aligned_cols=43 Identities=16% Similarity=0.013 Sum_probs=35.0
Q ss_pred CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee--ecccc
Q 018589 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT--NKTEN 348 (353)
Q Consensus 294 id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~--~~~~~ 348 (353)
++|-. |||++|++ -..|+|+++.+.| ++|..-|+++|. |.++.
T Consensus 142 ~NPI~~L~e~~q~k~~k~P~yelv~E~G------------~~~~rEFv~q~sv~~~~~~ 188 (339)
T KOG3732|consen 142 LNPIGRLQELAQAKKWKLPEYELVQESG------------VPHRREFVIQCSVENFTEE 188 (339)
T ss_pred cChHHHHHHHHHHhCCCCCceEEEeccC------------CCccceEEEEEEecceeee
Confidence 34545 99999988 6779999999999 999999998764 55553
No 24
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=76.87 E-value=2.8 Score=41.88 Aligned_cols=34 Identities=21% Similarity=-0.015 Sum_probs=31.9
Q ss_pred HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 299 CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 299 Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
|||++.+.+..|.|++++++| |+|++-|+.+|+=
T Consensus 44 l~E~~~r~~~~v~fevl~eeG------------p~H~~~fv~rvtv 77 (339)
T KOG3732|consen 44 LQEYGLRRGLTPVYEVLREEG------------PPHMPNFVFRVTV 77 (339)
T ss_pred HHHHHHHhCCCcceeeeeccC------------CccCCCeEEEEEE
Confidence 999999889999999999999 9999999999863
No 25
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=76.14 E-value=3 Score=30.46 Aligned_cols=35 Identities=20% Similarity=0.075 Sum_probs=26.7
Q ss_pred Cc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCcc-ceeEEEee
Q 018589 297 KE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFI-LLSFHSVT 343 (353)
Q Consensus 297 K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~-~lf~~~~~ 343 (353)
++ |+|+|++.+..+.|..+...| +++. ..|.+.|.
T Consensus 2 ~~~L~e~~~~~~~~~~~~~~~~~~------------~~~~~~~f~~~~~ 38 (67)
T PF00035_consen 2 KSRLNEYCQKNKFPPPYYYIEEEG------------PSHHRPRFICTVY 38 (67)
T ss_dssp HHHHHHHHHHCTSSEEEEEEEEES------------SSSSSEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCCEEEEEEeC------------CCCCCceEEEEEE
Confidence 56 999999988888888887777 5554 67777664
No 26
>PRK02287 hypothetical protein; Provisional
Probab=45.05 E-value=22 Score=32.35 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHH
Q 018589 263 KSVFWALFGAIYLCFGFPEVYRVLFEV 289 (353)
Q Consensus 263 ADvfEALIGAIYlDsG~e~v~~fv~~~ 289 (353)
=.++||+++|+|+-+..+.|.+++..+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 468999999999999999999988654
No 27
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=31.90 E-value=46 Score=30.40 Aligned_cols=28 Identities=25% Similarity=0.042 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 018589 262 VKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (353)
Q Consensus 262 lADvfEALIGAIYlDsG~e~v~~fv~~~ 289 (353)
.=.++||+++|+|+-+=.+.|..++..+
T Consensus 114 kLss~EAlaAaLYI~G~~deA~~lls~F 141 (179)
T COG2042 114 KLSSAEALAAALYIVGFKDEASELLSKF 141 (179)
T ss_pred hhchHHHHHHHHHHhCcHHHHHHHHhhC
Confidence 3468999999999998899999988764
No 28
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=31.05 E-value=21 Score=24.22 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH
Q 018589 262 VKSVFWALFGA 272 (353)
Q Consensus 262 lADvfEALIGA 272 (353)
-.|++||+||+
T Consensus 25 pEDAvEaLi~~ 35 (35)
T PF08383_consen 25 PEDAVEALIGN 35 (35)
T ss_pred HHHHHHHHhcC
Confidence 47999999984
No 29
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=30.51 E-value=49 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.035 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 018589 262 VKSVFWALFGAIYLCFGFPEVYRVLFEV 289 (353)
Q Consensus 262 lADvfEALIGAIYlDsG~e~v~~fv~~~ 289 (353)
.=.++||+.+|+|+-+=.+.|.+++..+
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~F 92 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKF 92 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 3568999999999998888899887654
No 30
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.29 E-value=2.4e+02 Score=21.70 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhC----CCCChhhHHHHHHHH
Q 018589 190 LCFLGQFVLELAFCEFFLQRY----PRESPAPMRERVFGL 225 (353)
Q Consensus 190 LEFLGDaVL~lvvs~~Lf~~~----P~~~eg~Lt~~rs~l 225 (353)
|.+++-.+++++++...++++ |-.+|..+..+-..+
T Consensus 5 lali~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QM 44 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQM 44 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 678999999999999988864 666676666554443
Done!