Query 018589
Match_columns 353
No_of_seqs 309 out of 1537
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 02:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n3w_A Ribonuclease III; nucle 100.0 1E-41 3.5E-46 320.7 13.2 177 136-343 28-216 (248)
2 1o0w_A Ribonuclease III, RNAse 100.0 1.9E-40 6.6E-45 312.2 15.4 185 133-344 18-219 (252)
3 2nug_A Ribonuclease III, RNAse 100.0 2.9E-39 1E-43 298.2 16.9 173 135-344 3-190 (221)
4 2a11_A Ribonuclease III, RNAse 100.0 4E-40 1.4E-44 307.8 9.4 179 136-343 7-200 (242)
5 3c4b_A Endoribonuclease dicer; 100.0 4.9E-37 1.7E-41 290.0 16.6 177 136-343 15-232 (265)
6 3o2r_A Ribonuclease III; struc 100.0 5.7E-37 1.9E-41 273.7 13.9 140 136-294 28-167 (170)
7 3rv0_A K. polysporus DCR1; RNA 100.0 2.1E-36 7.3E-41 296.4 9.3 170 137-319 86-282 (341)
8 3rv1_A K. polysporus DCR1; RNA 100.0 2.1E-33 7.3E-38 263.9 9.1 144 137-293 86-239 (246)
9 2qvw_A GLP_546_48378_50642; di 100.0 1.1E-28 3.9E-33 262.8 11.8 144 135-295 594-753 (756)
10 2qvw_A GLP_546_48378_50642; di 99.9 9.5E-29 3.3E-33 263.4 8.2 169 117-306 265-461 (756)
11 1u61_A Hypothetical protein; s 99.9 1.8E-22 6.1E-27 174.4 10.4 106 184-290 9-126 (138)
12 2gsl_A Hypothetical protein; a 99.8 2.1E-20 7.3E-25 161.1 8.5 109 184-294 12-130 (137)
13 2dix_A Interferon-inducible do 97.4 0.00011 3.9E-09 57.5 4.1 39 293-343 7-46 (84)
14 3adg_A F21M12.9 protein; HYL1, 97.3 0.00015 5E-09 55.1 3.7 37 294-343 3-41 (73)
15 1uhz_A Staufen (RNA binding pr 97.3 0.00016 5.5E-09 57.4 3.9 39 293-343 5-45 (89)
16 2khx_A Ribonuclease 3; drosha, 97.3 0.00018 6.2E-09 56.6 4.0 38 295-344 2-46 (85)
17 3adj_A F21M12.9 protein; HYL1, 97.3 0.00016 5.5E-09 55.4 3.5 37 295-343 5-43 (76)
18 3adl_A RISC-loading complex su 97.3 0.00021 7.4E-09 56.5 4.1 38 294-343 15-54 (88)
19 1di2_A XLRBPA, double stranded 97.2 0.00015 5.2E-09 54.4 3.0 36 296-343 2-39 (69)
20 2b7t_A Double-stranded RNA-spe 97.2 0.00029 1E-08 53.5 4.5 38 293-343 3-41 (73)
21 2cpn_A TAR RNA-binding protein 97.2 0.00022 7.6E-09 56.5 3.8 38 294-343 16-55 (89)
22 3llh_A RISC-loading complex su 97.2 0.00018 6.2E-09 57.0 3.2 40 293-344 13-53 (90)
23 1ekz_A DSRBDIII, maternal effe 97.2 0.00013 4.4E-09 55.9 2.1 39 293-343 6-45 (76)
24 2dmy_A Spermatid perinuclear R 97.1 0.00044 1.5E-08 55.6 4.5 38 294-344 16-54 (97)
25 1t4n_A Ribonuclease III; DSRBD 97.0 0.00019 6.4E-09 57.8 1.3 37 294-343 6-43 (94)
26 2l2n_A Hyponastic leave 1; DSR 97.0 0.00076 2.6E-08 54.8 4.9 40 291-343 14-55 (103)
27 1t4o_A Ribonuclease III; RNT1P 97.0 0.00035 1.2E-08 58.3 2.9 39 293-344 7-46 (117)
28 1whq_A RNA helicase A; double- 96.9 0.0007 2.4E-08 54.7 4.1 38 293-343 5-43 (99)
29 2l33_A Interleukin enhancer-bi 96.9 0.001 3.4E-08 53.1 4.7 38 294-344 14-52 (91)
30 1x49_A Interferon-induced, dou 96.9 0.00051 1.7E-08 55.3 3.0 37 295-343 15-52 (97)
31 1uil_A Double-stranded RNA-bin 96.6 0.00091 3.1E-08 55.3 2.4 37 295-344 27-64 (113)
32 1x48_A Interferon-induced, dou 95.9 0.0041 1.4E-07 49.0 3.0 37 293-343 5-43 (88)
33 2ljh_A Double-stranded RNA-spe 95.8 0.0043 1.5E-07 51.4 2.9 34 294-343 37-71 (114)
34 1x47_A DGCR8 protein; structur 95.8 0.0051 1.7E-07 49.4 3.2 36 294-343 16-53 (98)
35 1qu6_A Protein kinase PKR; dsR 95.7 0.0045 1.5E-07 54.6 2.8 37 295-343 14-51 (179)
36 1whn_A Hypothetical protein ri 94.6 0.0087 3E-07 50.5 1.1 42 287-343 19-62 (128)
37 3p1x_A Interleukin enhancer-bi 94.2 0.059 2E-06 40.9 4.8 36 296-344 6-42 (75)
38 2b7v_A Double-stranded RNA-spe 93.5 0.05 1.7E-06 40.6 3.3 33 295-343 5-38 (71)
39 2yt4_A Protein DGCR8; DSRBD, R 91.1 0.11 3.8E-06 47.6 3.0 36 294-343 22-59 (232)
40 2l3j_A Double-stranded RNA-spe 85.9 0.41 1.4E-05 43.9 3.0 34 294-343 161-195 (236)
41 1ztd_A Hypothetical protein PF 85.6 1.8 6.3E-05 35.6 6.3 90 185-294 10-103 (133)
42 2yt4_A Protein DGCR8; DSRBD, R 84.4 0.3 1E-05 44.7 1.3 38 293-343 129-170 (232)
43 1qu6_A Protein kinase PKR; dsR 74.6 2.4 8.3E-05 36.8 3.9 38 293-343 103-141 (179)
44 1v18_B APC protein, adenomatou 39.3 11 0.00038 25.8 1.2 22 10-31 14-35 (47)
No 1
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1e-41 Score=320.66 Aligned_cols=177 Identities=19% Similarity=0.275 Sum_probs=130.6
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 018589 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (353)
Q Consensus 136 l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~e 215 (353)
+..++++|||+|+| +.||.+||||+||.+. .+|||||||||+||+++|+++||.+||+.++
T Consensus 28 l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~------~~neRLefLGDavL~~~v~~~L~~~~p~~~e 88 (248)
T 3n3w_A 28 IEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 (248)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHTBCTTSBTT------BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHCCCCCC-------------HHHHHHHhcCcCCCCC------CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 57899999999999 8999999999999762 6999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCC-
Q 018589 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP- 294 (353)
Q Consensus 216 g~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~i- 294 (353)
|.|+.+|+.+|||++|+.+|.++||+++|+.++++...+++.+++++||+|||+|||||+|+|++.|++|+.+++.+.+
T Consensus 89 g~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~ 168 (248)
T 3n3w_A 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFP 168 (248)
T ss_dssp CCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988766666778999999999999999999999999999999875432
Q ss_pred ---------CCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 295 ---------EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 295 ---------d~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
|||+ ||||||++ ...|.|++++++| |+|++.|++.|.
T Consensus 169 ~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~G------------p~h~~~F~v~v~ 216 (248)
T 3n3w_A 169 QIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFG------------PDHLKQFEIALM 216 (248)
T ss_dssp ------------------------------------------------------------
T ss_pred HhhccccccCHHHHHHHHHHHcCCCCCceEEeeccC------------CCCCceEEEEEE
Confidence 4888 99999988 6678999999999 889999998875
No 2
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=1.9e-40 Score=312.17 Aligned_cols=185 Identities=20% Similarity=0.282 Sum_probs=166.1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccC-----CCchhHHHHHHHHHHHHHHHHHH
Q 018589 133 DEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVR-----AGHSRLCFLGQFVLELAFCEFFL 207 (353)
Q Consensus 133 ~~~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~-----~nyERLEFLGDaVL~lvvs~~Lf 207 (353)
...+..|+++|||+|+| +.||.+||||+||.+++ ... .+|||||||||+||+++|+++||
T Consensus 18 ~~~~~~l~~~lgy~f~~-------------~~LL~~AlTH~S~~~~~--~~~~~~~~~~nerLefLGDavL~l~v~~~L~ 82 (252)
T 1o0w_A 18 RKIVEEFQKETGINFKN-------------EELLFRALCHSSYANEQ--NQAGRKDVESNEKLEFLGDAVLELFVCEILY 82 (252)
T ss_dssp HHHHHHHHHHHCCCCSS-------------HHHHHHHHBCHHHHHHH--HHTTCTTCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-------------HHHHHHHhCCCCccccc--cccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999 89999999999997642 112 39999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHH
Q 018589 208 QRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLF 287 (353)
Q Consensus 208 ~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~ 287 (353)
.+||+.++|.|+.+|+.+|||.+|+.+|.++||++||+.+.++...+++..++++||+|||+|||||+|+|++.|++||.
T Consensus 83 ~~~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~ 162 (252)
T 1o0w_A 83 KKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFE 162 (252)
T ss_dssp HHCTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876666667799999999999999999999999999999
Q ss_pred HHhCC----------CCCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 288 EVFGM----------DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 288 ~~l~~----------~id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
+++.+ ..|||+ ||||||++ ...|+|++++++| |+|++.|++.|.=
T Consensus 163 ~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~G------------p~h~~~F~v~v~v 219 (252)
T 1o0w_A 163 QEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEK------------NDGDRIFVVEVRV 219 (252)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEEC------------CTTSCEEEEEEEE
T ss_pred HHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeC------------CCCCCeEEEEEEE
Confidence 88742 235888 99999998 6789999999999 9999999998864
No 3
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=2.9e-39 Score=298.16 Aligned_cols=173 Identities=19% Similarity=0.242 Sum_probs=157.3
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCC
Q 018589 135 YLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRES 214 (353)
Q Consensus 135 ~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~ 214 (353)
.+..++++|||+|+| +.||.+||||+||.++ .+|||||||||+||+++++++||.+||+.+
T Consensus 3 ~~~~l~~~lg~~f~~-------------~~ll~~AlTh~S~~~~------~~nerLefLGDavL~~~v~~~L~~~~p~~~ 63 (221)
T 2nug_A 3 MLEQLEKKLGYTFKD-------------KSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKR 63 (221)
T ss_dssp CHHHHHHHHTCCCSS-------------HHHHHHHHBCTTTCSS------SCSHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHhCCCcCC-------------HHHHHHHhCCCCCCCC------CCchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 356799999999999 8999999999999762 599999999999999999999999999999
Q ss_pred hhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHH--HHHHHHHHhCC
Q 018589 215 PAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPE--VYRVLFEVFGM 292 (353)
Q Consensus 215 eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~--v~~fv~~~l~~ 292 (353)
+|.|+.+|+.+|||.+|+.+|.++||++||+.+.++.. ++++||+|||+|||||+|+|++. |++|+.+++.+
T Consensus 64 ~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~~~~------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~ 137 (221)
T 2nug_A 64 EGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKIN------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKE 137 (221)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTTCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCCccc------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877542 79999999999999999999998 99999887632
Q ss_pred -----------CCCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 293 -----------DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 293 -----------~id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
..|||+ ||||||++ ...|+|++++++| |+|++.|++.|.=
T Consensus 138 ~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G------------~~h~~~F~v~v~v 190 (221)
T 2nug_A 138 DILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEG------------PHHKKKFIVEAKI 190 (221)
T ss_dssp HHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEES------------CGGGCEEEEEEEE
T ss_pred HHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeC------------CCCCceEEEEEEE
Confidence 235788 99999998 6779999999999 9999999998864
No 4
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4e-40 Score=307.78 Aligned_cols=179 Identities=22% Similarity=0.245 Sum_probs=129.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 018589 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (353)
Q Consensus 136 l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~e 215 (353)
+..++++|||+| + +.||.+||||+||.+++ +...||||||||||+||+++++++||.+||+.++
T Consensus 7 l~~l~~~lgy~f-~-------------~~ll~~AlTH~S~~~~~--~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~ 70 (242)
T 2a11_A 7 RQPLLDALGVDL-P-------------DELLSLALTHRSYAYEN--GGLPTNERLEFLGDAVLGLTITDALFHRHPDRSE 70 (242)
T ss_dssp CHHHHHHHTSCC-C-------------HHHHHHHTBCHHHHHHT--TSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred HHHHHHHHCCCC-C-------------HHHHHHHhCCcCccccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 467999999999 8 89999999999997532 2357999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHc---CCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCC
Q 018589 216 APMRERVFGLIGRRNLPKWIKAA---SLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGM 292 (353)
Q Consensus 216 g~Lt~~rs~lVsn~~La~lA~~l---gL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~ 292 (353)
|.|+.+|+.+|||++|+.+|.++ ||++||+.++++...+++..++++||+|||+|||||+|+|++.|++|+.+++.+
T Consensus 71 g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~ 150 (242)
T 2a11_A 71 GDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGP 150 (242)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999887666666678999999999999999999999999999988633
Q ss_pred C----------CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 D----------PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~----------id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
. .|||+ ||||||++ ...|+|++++ +| |+|++.|++.|.
T Consensus 151 ~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~G------------p~h~~~F~v~v~ 200 (242)
T 2a11_A 151 LLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-TG------------PDHDKEFTAVVV 200 (242)
T ss_dssp HHHHTTC--------------------------------------------------------
T ss_pred HHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEec-cC------------CCCCCeEEEEEE
Confidence 2 35899 99999988 5679999988 89 889999998874
No 5
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=4.9e-37 Score=290.02 Aligned_cols=177 Identities=16% Similarity=0.198 Sum_probs=146.3
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 018589 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (353)
Q Consensus 136 l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~e 215 (353)
+..++++|||+|+| +.||.+||||+||.++ ....||||||||||+||+++|+++||.+||++++
T Consensus 15 l~~le~~lgy~F~~-------------~~LL~~AlTH~S~~~~---~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~ 78 (265)
T 3c4b_A 15 FETFEKKINYRFKN-------------KAYLLQAFTHASYHYN---TITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 78 (265)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHHBCTTCTTC---CSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCH
T ss_pred HHHHHHHhCCccCC-------------HHHHHHHhcCcCcCCC---CCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCH
Confidence 57899999999999 8999999999999763 2356999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCccccccCchh--------------------------------hhhcccCCCchHH
Q 018589 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEM--------------------------------DRLIRKEREPPVK 263 (353)
Q Consensus 216 g~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~--------------------------------~~~~~~~~~KvlA 263 (353)
|.||.+|+.+|||.+|+.+|+++||++||++.... ...+++..++++|
T Consensus 79 g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~la 158 (265)
T 3c4b_A 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG 158 (265)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHH
Confidence 99999999999999999999999999999853211 1122345689999
Q ss_pred HHHHHHHHHHHHhcCh--HHHHHHHHHHhCCCC------CCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCc
Q 018589 264 SVFWALFGAIYLCFGF--PEVYRVLFEVFGMDP------EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASF 334 (353)
Q Consensus 264 DvfEALIGAIYlDsG~--e~v~~fv~~~l~~~i------d~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~ 334 (353)
|+|||||||||+|+|+ +.|++||.+++.+.+ ++|+ +|+++|.... |......| +.|
T Consensus 159 D~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~---~~~~~~~~------------~~~ 223 (265)
T 3c4b_A 159 DIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPE---TAKFSPAE------------RTY 223 (265)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTT---TEEECCCE------------ECT
T ss_pred HHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccC---Cceeeecc------------ccC
Confidence 9999999999999998 789999998886554 3788 9998876532 22222333 247
Q ss_pred cceeEEEee
Q 018589 335 ILLSFHSVT 343 (353)
Q Consensus 335 ~~lf~~~~~ 343 (353)
+..|++.|.
T Consensus 224 ~~~f~v~v~ 232 (265)
T 3c4b_A 224 DGKVRVTVE 232 (265)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 788888874
No 6
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=5.7e-37 Score=273.72 Aligned_cols=140 Identities=21% Similarity=0.339 Sum_probs=131.8
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCCh
Q 018589 136 LLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESP 215 (353)
Q Consensus 136 l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~e 215 (353)
+.+++++|||+|+| +.||.+||||+||.++ .+|||||||||+||+++++++||.+||+.++
T Consensus 28 l~~le~~lgy~F~d-------------~~LL~~AlTH~S~~~~------~~neRLEfLGDaVL~l~vs~~L~~~~P~~~e 88 (170)
T 3o2r_A 28 IEKLEQSLTYEFKD-------------KNLLIHALTHKSFKKS------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAE 88 (170)
T ss_dssp HHHHHHHHTCCCSS-------------HHHHHHHTBCTTSSTT------CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhCCCCCC-------------HHHHHHHhcCCCCCCC------cchHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Confidence 67899999999999 8999999999999762 7999999999999999999999999999999
Q ss_pred hhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCC
Q 018589 216 APMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294 (353)
Q Consensus 216 g~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG~e~v~~fv~~~l~~~i 294 (353)
|.|+.+|+.+|||++|+.+|.++||+++|+.++++...+++.+++++||+|||+|||||+|+|+++|++|+.+++.+.+
T Consensus 89 g~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~~~~ 167 (170)
T 3o2r_A 89 GDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNF 167 (170)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988776666778999999999999999999999999999999986654
No 7
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.1e-36 Score=296.37 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=121.0
Q ss_pred HHHHHHhCCC-CCCCCCCCCCCCCCChHHHHHHHhcCCCccccccc-----ccCCCchhHHHHHHHHHHHHHHHHHHhhC
Q 018589 137 LEAKQALGYS-LEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR-----HVRAGHSRLCFLGQFVLELAFCEFFLQRY 210 (353)
Q Consensus 137 ~~l~~~LGy~-f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~-----~~~~nyERLEFLGDaVL~lvvs~~Lf~~~ 210 (353)
..++++|||+ |+| +.||.+||||+||.+++.. ....+|||||||||+||+++++++||.+|
T Consensus 86 ~~lE~~igy~~F~d-------------~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~ 152 (341)
T 3rv0_A 86 TDVDMFIKYPVVYD-------------ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRF 152 (341)
T ss_dssp CTTGGGCSSCCCSC-------------HHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhcCCCCcCC-------------HHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4589999999 999 8999999999999864210 12468999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhh-cccCCCchHHHHHHHHHHHHHHhc---ChHHHHHHH
Q 018589 211 PRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF---GFPEVYRVL 286 (353)
Q Consensus 211 P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~-~~~~~~KvlADvfEALIGAIYlDs---G~e~v~~fv 286 (353)
|++++|.|+.+|+.+|||.+|+.+|.++||+++|+++.+.... .+...++++||+|||+|||||+|+ |++.|++|+
T Consensus 153 P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi 232 (341)
T 3rv0_A 153 PSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWL 232 (341)
T ss_dssp TTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHH
Confidence 9999999999999999999999999999999999975332211 122357899999999999999999 999999999
Q ss_pred HHHhCC--------------CCCCCc-HHHHHhccC--CCcceEEEeeec
Q 018589 287 FEVFGM--------------DPEDKE-CQPKLRRQL--EDVDYVSVEFEG 319 (353)
Q Consensus 287 ~~~l~~--------------~id~K~-Lqe~lq~~~--~~~~Y~~i~e~G 319 (353)
.+++.+ ..|||+ ||||+|+++ ..|+|++++++|
T Consensus 233 ~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~G 282 (341)
T 3rv0_A 233 EELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMP 282 (341)
T ss_dssp HHHTHHHHHCGGGC------------------------------------
T ss_pred HHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccC
Confidence 887532 136899 999999873 357999999888
No 8
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.98 E-value=2.1e-33 Score=263.87 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=117.4
Q ss_pred HHHHHHhCCC-CCCCCCCCCCCCCCChHHHHHHHhcCCCcccccc-----cccCCCchhHHHHHHHHHHHHHHHHHHhhC
Q 018589 137 LEAKQALGYS-LEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKA-----RHVRAGHSRLCFLGQFVLELAFCEFFLQRY 210 (353)
Q Consensus 137 ~~l~~~LGy~-f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~-----~~~~~nyERLEFLGDaVL~lvvs~~Lf~~~ 210 (353)
..++++|||+ |++ +.||.+||||+||.+++. .....+|||||||||+||+++++++||.+|
T Consensus 86 ~~lE~~lgY~~F~d-------------~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~ 152 (246)
T 3rv1_A 86 TDVDMFIKYPVVYD-------------ENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRF 152 (246)
T ss_dssp CGGGGGCSSCCCSC-------------HHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCcCC-------------HHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4688999999 999 999999999999976421 123579999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhh-cccCCCchHHHHHHHHHHHHHHhc-C--hHHHHHHH
Q 018589 211 PRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRL-IRKEREPPVKSVFWALFGAIYLCF-G--FPEVYRVL 286 (353)
Q Consensus 211 P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~-~~~~~~KvlADvfEALIGAIYlDs-G--~e~v~~fv 286 (353)
|+.++|.|+.+|+.+|||.+|+.+|.++||+++|+++.+.... .+...++++||+|||+|||||+|+ | ++.|++|+
T Consensus 153 P~~~eG~Lt~lRs~lVsn~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l 232 (246)
T 3rv1_A 153 PSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWL 232 (246)
T ss_dssp TTCCHHHHHHHHHHHHSHHHHHHHHHHTTSHHHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHH
T ss_pred CCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999975332221 122468999999999999999998 4 88999999
Q ss_pred HHHhCCC
Q 018589 287 FEVFGMD 293 (353)
Q Consensus 287 ~~~l~~~ 293 (353)
.+++.|.
T Consensus 233 ~~L~~p~ 239 (246)
T 3rv1_A 233 EELSEKK 239 (246)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 9988654
No 9
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.95 E-value=1.1e-28 Score=262.78 Aligned_cols=144 Identities=16% Similarity=0.096 Sum_probs=124.5
Q ss_pred HHHHHHHHhCCCCCCC----------CCC-CCCCCCCCh---HHHHHHHhcCCCcccccccccCCCchhHHHHHHHHHHH
Q 018589 135 YLLEAKQALGYSLEPS----------DQL-GDDNPAKHF---DTLLYLAFQHPFCERNKARHVRAGHSRLCFLGQFVLEL 200 (353)
Q Consensus 135 ~l~~l~~~LGy~f~~~----------~~~-~~~~~~~~~---~~LL~~ALTH~S~~~~~~~~~~~nyERLEFLGDaVL~l 200 (353)
.+..+|++|||+|+++ .++ ..+ +.... +.||.+||||+| |||||||||+||++
T Consensus 594 ~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i-~~~~~~~~~~LL~~AlTH~S------------neRLEfLGDaVL~l 660 (756)
T 2qvw_A 594 VLALYEKILAYESSGGSKHIAAQTVSRSLAVPI-PSGTIPFLIRLLQIALTPHV------------YQKLELLGDAFLKC 660 (756)
T ss_dssp HHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCC-CSSCHHHHHHHHHHHHSTGG------------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccCcchhhhHhhhhhhhcccc-ccccccccHHHHHHHhcCcc------------chHHHHHHHHHHHH
Confidence 4788999999999981 000 000 00001 589999999998 79999999999999
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcC--CccccccCchhhhhcccCCCchHHHHHHHHHHHHHHhcC
Q 018589 201 AFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQNLIFPFDEMDRLIRKEREPPVKSVFWALFGAIYLCFG 278 (353)
Q Consensus 201 vvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lg--L~~~I~~~~~~~~~~~~~~~KvlADvfEALIGAIYlDsG 278 (353)
+++++||.+||++++|.|+.+|+.+|||++|+.+|+++| |++||+.++++.. .++|++||+|||+|||||+|+|
T Consensus 661 ~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~~----~~~kilaD~~EAliGAiylD~G 736 (756)
T 2qvw_A 661 SLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKIQ----PDSKVYGDTFEAILAAILLACG 736 (756)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTCC----TTCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhhc----CCccHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999 9999999877543 4689999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCC
Q 018589 279 FPEVYRVLFEVFGMDPE 295 (353)
Q Consensus 279 ~e~v~~fv~~~l~~~id 295 (353)
++.|++|+.+++.+.++
T Consensus 737 ~~~a~~~v~~~~~~~l~ 753 (756)
T 2qvw_A 737 EEAAGAFVREHVLPQVV 753 (756)
T ss_dssp HHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999876654
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.95 E-value=9.5e-29 Score=263.37 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=132.6
Q ss_pred ccCCCccccccchhhhHHHHHHHHHHhCCCCCCCCCCCCCCCCCChHHHHHHHhcCCCccccccc---------------
Q 018589 117 SCLPPSRLNNADQTWIDEYLLEAKQALGYSLEPSDQLGDDNPAKHFDTLLYLAFQHPFCERNKAR--------------- 181 (353)
Q Consensus 117 ~~lP~~~~~~~~~~w~~~~l~~l~~~LGy~f~~~~~~~~~~~~~~~~~LL~~ALTH~S~~~~~~~--------------- 181 (353)
.++|++++|.++..-.. .+++. .|.. ...++..+++|+|++++......
T Consensus 265 ~~lPsil~rie~ll~a~---~al~~----~~p~---------~~~i~~~~leAlT~~~~~~~g~~~~~~~~~~AlTh~s~ 328 (756)
T 2qvw_A 265 QFLPEIAKHICDIQNTI---CALDK----SFPD---------CGRIGGERYFAITAGLRLDQGRGRGLAGWRTPFGPFGV 328 (756)
T ss_dssp TTHHHHHHHHHHHHHHH---HHHGG----GSCC---------CSCCHHHHHHHHHHHHBCSCCBTTBSBTTEEECBGGGB
T ss_pred HHhHHHHHHHHHHHHHH---HHHHh----cCCc---------ccccCHHHHHHHhhhhhhhhccccchhhhhhhcccccc
Confidence 48899999886543221 12222 2222 11234566788877765432000
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCch
Q 018589 182 HVRAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPP 261 (353)
Q Consensus 182 ~~~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~Kv 261 (353)
....||||||||||+||+++++++||.+||+.+||.|+.+|+++|||++|+.+|+++||++||+.++++. .++++
T Consensus 329 ~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~-----~~~~i 403 (756)
T 2qvw_A 329 SHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV-----AKSKT 403 (756)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC-------CCCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-----CcccH
Confidence 0114899999999999999999999999999999999999999999999999999999999999988764 35899
Q ss_pred HHHHHHHHHHHHHHh-cChHHHHHHHHHHhCCCCC----------C-Cc-HHHHHhcc
Q 018589 262 VKSVFWALFGAIYLC-FGFPEVYRVLFEVFGMDPE----------D-KE-CQPKLRRQ 306 (353)
Q Consensus 262 lADvfEALIGAIYlD-sG~e~v~~fv~~~l~~~id----------~-K~-Lqe~lq~~ 306 (353)
+||+|||+|||||+| +|++.|++|+.+++.+.++ + |+ |||++|++
T Consensus 404 laD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~ 461 (756)
T 2qvw_A 404 WADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGE 461 (756)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSC
T ss_pred HHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhcc
Confidence 999999999999999 9999999999999876543 3 77 99999876
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.87 E-value=1.8e-22 Score=174.35 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=97.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHc----CCc----cccccCchhhhhcc
Q 018589 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAA----SLQ----NLIFPFDEMDRLIR 255 (353)
Q Consensus 184 ~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~l----gL~----~~I~~~~~~~~~~~ 255 (353)
..|.+||||||||||+++|+++||.+ |..++|.||++|+.+||.++++.++.++ +|. ++++.|.+....++
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~ 87 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTV 87 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCC
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCC
Confidence 46899999999999999999999999 8889999999999999999999999999 998 79998887655555
Q ss_pred cCCCch----HHHHHHHHHHHHHHhcChHHHHHHHHHHh
Q 018589 256 KEREPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVF 290 (353)
Q Consensus 256 ~~~~Kv----lADvfEALIGAIYlDsG~e~v~~fv~~~l 290 (353)
+.+..+ +||.|||||||+|+|+|++.++.|+..++
T Consensus 88 ~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 88 PKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAI 126 (138)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667788 99999999999999999999999998776
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.82 E-value=2.1e-20 Score=161.13 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=90.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHcCcchHHHHHHHcC--Cc----cccccCchhhhhcccC
Q 018589 184 RAGHSRLCFLGQFVLELAFCEFFLQRYPRESPAPMRERVFGLIGRRNLPKWIKAAS--LQ----NLIFPFDEMDRLIRKE 257 (353)
Q Consensus 184 ~~nyERLEFLGDaVL~lvvs~~Lf~~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lg--L~----~~I~~~~~~~~~~~~~ 257 (353)
..|.+|||||||||++++|+++||.+ |. ++|.|++.+..+||.+.++.++.+++ |. .+++.|.+.....+..
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k 89 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPR 89 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCS
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCC
Confidence 46899999999999999999999998 88 99999999999999999999999996 55 4555554432222233
Q ss_pred CCch----HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCC
Q 018589 258 REPP----VKSVFWALFGAIYLCFGFPEVYRVLFEVFGMDP 294 (353)
Q Consensus 258 ~~Kv----lADvfEALIGAIYlDsG~e~v~~fv~~~l~~~i 294 (353)
+..+ +||.|||+|||+|+|+|++.++.|+..++...+
T Consensus 90 ~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~~~~~ 130 (137)
T 2gsl_A 90 SCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGEL 130 (137)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4554 999999999999999999999999998875433
No 13
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=97.40 E-value=0.00011 Score=57.47 Aligned_cols=39 Identities=8% Similarity=-0.156 Sum_probs=35.1
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|||+ ||||||++...|.|++++++| |+|++.|++.|.
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 46 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSDV------------QIHVPTFTFRVT 46 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEEC------------SSSSCEEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeEC------------CCCCCeEEEEEE
Confidence 356888 999999987679999999999 999999999985
No 14
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=97.32 E-value=0.00015 Score=55.11 Aligned_cols=37 Identities=24% Similarity=0.064 Sum_probs=33.0
Q ss_pred CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|+|+ ||||||++ ...|.|+++++ | |+|+..|++.|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~-G------------p~h~~~F~~~v~ 41 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKE-G------------PSHKSLFQSTVI 41 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEE-S------------STTSCEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeE-C------------CCCCCeEEEEEE
Confidence 57889 99999998 56799999986 9 999999999985
No 15
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=97.30 E-value=0.00016 Score=57.36 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=34.9
Q ss_pred CCCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 DPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|+|+ ||||||++ ...|.|++++++| |+|+..|++.|.
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~G------------p~H~~~F~~~v~ 45 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERG------------MPRRREFVMQVK 45 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEES------------CSTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeEC------------CCCCCeEEEEEE
Confidence 357889 99999998 5669999999999 999999999985
No 16
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=97.29 E-value=0.00018 Score=56.57 Aligned_cols=38 Identities=16% Similarity=-0.023 Sum_probs=33.5
Q ss_pred CCCc-HHHHHhc-----c-CCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 295 EDKE-CQPKLRR-----Q-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 295 d~K~-Lqe~lq~-----~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
|||+ ||||||+ . ...|+|++++++| |+|++.|++.|.=
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~G------------p~H~~~F~v~V~v 46 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVG------------PSHARTYTVAVYF 46 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCC------------SSSCCCEEEEEEE
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeEC------------CCCCCcEEEEEEE
Confidence 6899 9999997 3 4579999999999 9999999999864
No 17
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=97.27 E-value=0.00016 Score=55.43 Aligned_cols=37 Identities=14% Similarity=-0.065 Sum_probs=33.4
Q ss_pred CCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 295 EDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 295 d~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
|+|+ ||||||++ ...|.|++++++| |+|++.|++.|.
T Consensus 5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 43 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPLYQCQKVET------------LGRVTQFTCTVE 43 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEEC------------SSSCEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCeEEEeeccC------------CCCCCcEEEEEE
Confidence 4788 99999998 5668999999999 999999999985
No 18
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=97.26 E-value=0.00021 Score=56.52 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=34.4
Q ss_pred CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|+|+ ||||||++ ...|+|++++++| |+|++.|++.|.
T Consensus 15 ~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~G------------p~H~~~F~~~v~ 54 (88)
T 3adl_A 15 SHEVGALQELVVQKGWRLPEYTVTQESG------------PAHRKEFTMTCR 54 (88)
T ss_dssp CCHHHHHHHHHHHTTCCCCEEEEEEEES------------CTTSCEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEEeEC------------CCCCCeEEEEEE
Confidence 46888 99999999 5669999999999 999999999985
No 19
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=97.25 E-value=0.00015 Score=54.38 Aligned_cols=36 Identities=8% Similarity=-0.081 Sum_probs=32.2
Q ss_pred CCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 296 DKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 296 ~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
|++ ||||||++ ...|+|++++++| |+|+..|++.|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 39 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESG------------PPHKREFTITCR 39 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEES------------CGGGCEEEEEEE
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeEC------------CCCCCeEEEEEE
Confidence 456 99999998 5669999999999 999999999985
No 20
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=97.23 E-value=0.00029 Score=53.46 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=34.3
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|+|+ ||||+|. ...|.|++++++| |+|+..|++.|.
T Consensus 3 ~~d~Ks~Lqe~~q~-~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 41 (73)
T 2b7t_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTG------------PVHAPLFVMSVE 41 (73)
T ss_dssp SSSSHHHHHHHHHH-CSCCEEEEEEEEC------------SSSSCEEEEEEE
T ss_pred CCCHHHHHHHHHcC-CCCceEEEEEeeC------------CCCCCeEEEEEE
Confidence 467999 9999996 6789999999999 999999999985
No 21
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=97.22 E-value=0.00022 Score=56.52 Aligned_cols=38 Identities=8% Similarity=-0.059 Sum_probs=34.0
Q ss_pred CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|+|+ ||||||++ ...|+|++++++| |+|+..|++.|.
T Consensus 16 ~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~G------------p~h~~~F~~~v~ 55 (89)
T 2cpn_A 16 CNPVGALQELVVQKGWRLPEYTVTQESG------------PAHRKEFTMTCR 55 (89)
T ss_dssp CCHHHHHHHHHHHHTCCCCEEEEEEEEC------------CSSSCEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEEeeEC------------CCCCCeEEEEEE
Confidence 36788 99999998 5669999999999 999999999985
No 22
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=97.20 E-value=0.00018 Score=57.04 Aligned_cols=40 Identities=18% Similarity=-0.069 Sum_probs=30.6
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
..|+|+ ||||||++...|.|++++++| |+|+..|++.|.=
T Consensus 13 ~kd~Ks~LqE~~q~~~~~p~Y~~~~~~G------------p~H~~~F~~~v~v 53 (90)
T 3llh_A 13 GKTPISLLQEYGTRIGKTPVYDLLKAEG------------QAHQPNFTFRVTV 53 (90)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEC-----------------CCEEEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCCEEEEEEeEC------------CCCCCcEEEEEEE
Confidence 346888 999999887689999999999 9999999999864
No 23
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=97.19 E-value=0.00013 Score=55.86 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=34.0
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|||+ ||||||++...|.|++++++| |+|++.|++.|.
T Consensus 6 ~~d~ks~LqE~~q~~~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 45 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMTVHFKVLREEG------------PAHMKNFITACI 45 (76)
T ss_dssp CSCHHHHHHHHHHHTTCCCEEEESSSCC------------SSSCSCSSEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEeEC------------CCCCCcEEEEEE
Confidence 346888 999999994449999999999 999999999985
No 24
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=97.10 E-value=0.00044 Score=55.63 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=34.0
Q ss_pred CCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 294 id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
.|+|+ ||||+|++ ..|+|++++++| |+|++.|++.|.=
T Consensus 16 ~d~Kt~LqE~~Q~~-~~p~Y~~~~~~G------------p~H~~~F~~~v~v 54 (97)
T 2dmy_A 16 IDLMNALMRLNQIR-PGLQYKLLSQSG------------PVHAPVFTMSVDV 54 (97)
T ss_dssp SSCTHHHHHHHHHS-CSCCCEEEEEES------------CSSSCEEEEEEEE
T ss_pred CCHHHHHHHHHhcC-CCceEEEEEeeC------------CCCCCeEEEEEEE
Confidence 46999 99999996 779999999999 9999999998863
No 25
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=96.99 E-value=0.00019 Score=57.78 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=32.8
Q ss_pred CCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|+|+ ||||+|+....|.|+++++ | |+|+..|++.|.
T Consensus 6 ~D~KT~LQE~~Q~~~~~p~Y~v~~~-G------------pdH~k~F~v~v~ 43 (94)
T 1t4n_A 6 MNAKRQLYSLIGYASLRLHYVTVKK-P------------TAVDPNSIVECR 43 (94)
T ss_dssp HHHHHHHHHHTCSSSSCCEEEECCC-C------------SSSCCSEEEEEE
T ss_pred CCchHHHHHHHcCCCCCCEEEEeee-C------------CCCCCeEEEEEE
Confidence 36899 9999998866799999876 9 999999999986
No 26
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=96.98 E-value=0.00076 Score=54.83 Aligned_cols=40 Identities=23% Similarity=0.002 Sum_probs=31.9
Q ss_pred CCCCCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 291 GMDPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 291 ~~~id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
....|+|+ ||||||++ ...|.|+++++ | |+|+..|++.|.
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-G------------p~H~~~F~~~V~ 55 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKE-G------------PSHKSLFQSTVI 55 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEE-S------------CSSSCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeE-c------------CCCCCeEEEEEE
Confidence 34457999 99999999 56689999986 9 999999999985
No 27
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=96.97 E-value=0.00035 Score=58.33 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=34.2
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
..|+|+ ||||+|+....|.|+++++ | |+|+..|++.|.=
T Consensus 7 ~~D~KT~LQE~~Q~~~~~P~Y~vv~~-G------------PdH~k~F~v~V~i 46 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYASLRLHYVTVKK-P------------TAVDPNSIVECRV 46 (117)
T ss_dssp CTTHHHHHHHHHCCGGGCCEEEEEEC-C------------CSSCCCEEEEEEC
T ss_pred CCCchHHHHHHHcCCCCCCEEEEeee-C------------CCCCCeEEEEEEE
Confidence 358999 9999998766799999987 9 9999999998864
No 28
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=96.91 E-value=0.0007 Score=54.71 Aligned_cols=38 Identities=11% Similarity=-0.103 Sum_probs=34.2
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|+|+ ||||||++...|+|++ +++| |+|+..|++.|.
T Consensus 5 ~~d~Kt~LqE~~Qk~~~~P~Y~~-~~~G------------p~H~~~F~~~V~ 43 (99)
T 1whq_A 5 SSGIKNFLYAWCGKRKMTPAYEI-RAVG------------NKNRQKFMCEVR 43 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEE-EEEE------------CSSSEEEEEEEE
T ss_pred CCCHHHHHHHHHHHCCCCCeEEE-eeec------------CCCCCeEEEEEE
Confidence 457999 9999999966799999 8899 999999999986
No 29
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=96.87 E-value=0.001 Score=53.11 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=34.2
Q ss_pred CCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 294 id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
.++|+ ||||+|++. .|.|++++++| |+|++.|+++|.=
T Consensus 14 ~~~K~~LqEl~Qk~~-~p~Y~~v~~~G------------p~H~~~F~v~V~v 52 (91)
T 2l33_A 14 KHGKNPVMELNEKRR-GLKYELISETG------------GSHDKRFVMEVEV 52 (91)
T ss_dssp SSTTCHHHHHHHHCS-SCEEEEEEEEE------------CSSCEEEEEEEEE
T ss_pred cCCCCHHHHHHHhCC-CCeEEEEEeeC------------CCCCCeEEEEEEE
Confidence 35888 999999988 89999999999 9999999998863
No 30
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.87 E-value=0.00051 Score=55.30 Aligned_cols=37 Identities=8% Similarity=-0.097 Sum_probs=33.1
Q ss_pred CCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 295 d~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
++|+ ||||||++...|.|++++++| |+|++.|++.|.
T Consensus 15 n~Kt~LqE~~Q~~~~~p~Y~~~~~~G------------p~H~~~F~v~v~ 52 (97)
T 1x49_A 15 FYMDKLNKYRQMHGVAITYKELSTSG------------PPHDRRFTFQVL 52 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEEEES------------CSSSCEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCCeEEEEEeeC------------CCCCCcEEEEEE
Confidence 4788 999999995568999999999 999999999985
No 31
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=96.56 E-value=0.00091 Score=55.31 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=32.9
Q ss_pred CCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 295 d~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
|||+ ||||||++...|.|+ ++++| |+|++.|++.|.=
T Consensus 27 d~Kt~LqE~~Qk~~~~p~Y~-~~~~G------------p~H~~~F~~~V~v 64 (113)
T 1uil_A 27 NAKARLNQYFQKEKIQGEYK-YTQVG------------PDHNRSFIAEMTI 64 (113)
T ss_dssp HHHHHHHHHHHHSCCCCCCE-EEEES------------CSTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCCeEE-EeeEC------------CCCCCcEEEEEEE
Confidence 5788 999999994489999 79999 9999999999874
No 32
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=95.93 E-value=0.0041 Score=49.00 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=31.4
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccc-eeEEEee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFIL-LSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~-lf~~~~~ 343 (353)
..|+|+ ||||||++...+.|+ .++| |+|++ .|++.|.
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~~Y~--~~~G------------p~H~~~~F~~~v~ 43 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSVNYE--QCEP------------NSELPQRFICKCK 43 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCEEEE--ECCC------------SSSSSCCEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCeeE--EeeC------------CCCCCceEEEEEE
Confidence 457899 999999995566999 7789 99999 7999885
No 33
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=95.84 E-value=0.0043 Score=51.42 Aligned_cols=34 Identities=15% Similarity=-0.044 Sum_probs=30.4
Q ss_pred CCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|+|+ ||||+|. |+|++++++| |+|+..|+++|.
T Consensus 37 kd~Ks~LQE~~q~----p~Y~~v~~~G------------p~H~k~F~v~V~ 71 (114)
T 2ljh_A 37 KNTVAMLNELRHG----LIYKLESQTG------------PVHAPLFTISVE 71 (114)
T ss_dssp SCHHHHHHHHCSC----CEEEEEEEEC------------CSSSCEEEEEEE
T ss_pred CCHHHHHHHHccC----CeEEEEEeeC------------CCCCCeEEEEEE
Confidence 46888 9999874 8999999999 999999999885
No 34
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=95.81 E-value=0.0051 Score=49.43 Aligned_cols=36 Identities=22% Similarity=-0.001 Sum_probs=30.5
Q ss_pred CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|||+ ||||||++ ...|+|++++++| |+ ..|++.|.
T Consensus 16 kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~G------------p~--~~F~~~V~ 53 (98)
T 1x47_A 16 KSEVCILHEYMQRVLKVRPVYNFFECEN------------PS--EPFGASVT 53 (98)
T ss_dssp CCHHHHHHHHHHHHTCSCCEEEEEECSS------------SS--CCEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEEEeEC------------CC--CcEEEEEE
Confidence 45788 99999998 5669999999999 66 88888875
No 35
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=95.74 E-value=0.0045 Score=54.60 Aligned_cols=37 Identities=14% Similarity=-0.082 Sum_probs=33.1
Q ss_pred CCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 295 d~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
++|+ ||||+|+++..|.|++++++| |+|+..|++.|.
T Consensus 14 n~ks~LqE~~q~~~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 51 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVVLKYQELPNSG------------PPHDRRFTFQVI 51 (179)
T ss_dssp SHHHHHHHHHHHHTCCCEEEEEESCB------------TTTBCCEEEEEE
T ss_pred CHHHHHHHHHHhCCCCCeEEEeeccC------------CCCCCeEEEEEE
Confidence 4778 999999995569999999999 999999999885
No 36
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=94.64 E-value=0.0087 Score=50.52 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=32.5
Q ss_pred HHHhCCCCCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 287 FEVFGMDPEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 287 ~~~l~~~id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
...+....|||+ ||||||++ ...|+|+++++ +|++.|++.|.
T Consensus 19 r~~~~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---------------~H~~~F~v~V~ 62 (128)
T 1whn_A 19 RRAYPPQITPKMCLLEWCRREKLPQPVYETVQR---------------TIDRMFCSVVT 62 (128)
T ss_dssp GGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEEC---------------SSSCCEEEEEE
T ss_pred hhhcccCCCHHHHHHHHHHHcCCCCCeEEEEee---------------cCCCcEEEEEE
Confidence 334444567999 99999998 66789998875 57888888875
No 37
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=94.17 E-value=0.059 Score=40.91 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=31.1
Q ss_pred CCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEeee
Q 018589 296 DKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVTN 344 (353)
Q Consensus 296 ~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~~ 344 (353)
.|+ +++|.|.. ..|.|++++++| |+|++.|++.|.=
T Consensus 6 ~K~pl~~L~q~~-~~p~Y~~~~~~G------------p~H~~~F~~~v~v 42 (75)
T 3p1x_A 6 GKNPVMELNEKR-RGLKYELISETG------------GSHDKRFVMEVEV 42 (75)
T ss_dssp CCCHHHHHHHHS-TTCCEEEEEEES------------CTTSCEEEEEEEE
T ss_pred CCCHHHHHHHcC-CCCEEEEEEeeC------------CCCCceEEEEEEE
Confidence 466 88998874 689999999999 9999999999864
No 38
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=93.52 E-value=0.05 Score=40.61 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=28.6
Q ss_pred CCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 295 EDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 295 d~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
+|++ |||+ +..|.|++++++| |+|++.|++.|.
T Consensus 5 np~s~L~E~----~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 38 (71)
T 2b7v_A 5 NPVMILNEL----RPGLKYDFLSESG------------ESHAKSFVMSVV 38 (71)
T ss_dssp CHHHHHHHH----CCSCEEEEEECCC------------CTTTCCEEEEEE
T ss_pred CHHHHHHHh----CCCCEEEEEEeEC------------CCCCceEEEEEE
Confidence 4566 9998 4678999999999 999999999986
No 39
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=91.09 E-value=0.11 Score=47.64 Aligned_cols=36 Identities=22% Similarity=-0.001 Sum_probs=30.4
Q ss_pred CCCCc-HHHHHhcc-CCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQ-LEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~-~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|||+ ||||||++ ...|.|++++++| |+ ..|++.|.
T Consensus 22 kd~ks~LqE~~q~~~~~~p~Y~~~~~~G------------p~--~~F~~~v~ 59 (232)
T 2yt4_A 22 KSEVCILHEYMQRVLKVRPVYNFFECEN------------PS--EPFGASVT 59 (232)
T ss_dssp SCHHHHHHHHHHHTTCCCCEEEEEECSC------------TT--SCEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEEeeEC------------CC--CcEEEEEE
Confidence 45778 99999999 5679999999999 66 88888874
No 40
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=85.89 E-value=0.41 Score=43.90 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=30.3
Q ss_pred CCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 294 PEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 294 id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
.|+|+ |||| +..|.|++++++| |+|+..|+++|.
T Consensus 161 ~d~ks~LqE~----~~~p~Y~~~~~~G------------p~h~~~F~~~v~ 195 (236)
T 2l3j_A 161 KNPVMILNEL----RPGLKYDFLSESG------------ESHAKSFVMSVV 195 (236)
T ss_dssp CCHHHHHHHH----CCCEEEEEECCSS------------SSSSCCEEEEEE
T ss_pred CCHHHHHHhc----CCCCcEEEEEeeC------------CCCCCeEEEEEE
Confidence 47888 9999 5678999999999 999999999886
No 41
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=85.58 E-value=1.8 Score=35.56 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=64.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHh--hCCCCChhhHHHHHHHHcCcchHHHHHHHcCCccccccCchhhhhcccCCCchH
Q 018589 185 AGHSRLCFLGQFVLELAFCEFFLQ--RYPRESPAPMRERVFGLIGRRNLPKWIKAASLQNLIFPFDEMDRLIRKEREPPV 262 (353)
Q Consensus 185 ~nyERLEFLGDaVL~lvvs~~Lf~--~~P~~~eg~Lt~~rs~lVsn~~La~lA~~lgL~~~I~~~~~~~~~~~~~~~Kvl 262 (353)
..-..|.-+||++++++++--|-. -+|. |. -|-|..|+-.....||...+.-. + ...-
T Consensus 10 ~tdK~LakfGDSLvNfl~SlALse~lG~Pt---g~-------rVPnaSLaiale~agL~~~~pR~---D-------Kh~k 69 (133)
T 1ztd_A 10 EIDKGLAKFGDSLINFLYSLALTEFLGKPT---GD-------RVPNASLAIALELTGLSKNLRRV---D-------KHAK 69 (133)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTSCC---CC-------CCCHHHHHHHHHHHTGGGGCCGG---G-------TTCH
T ss_pred hhcchHHHHhHHHHHHHHHHHHHHHhCCCC---CC-------CCCChHHHHHHHHhhhhhcCCcc---c-------ccCc
Confidence 345789999999999998887754 3443 21 36677787777777888777211 1 2344
Q ss_pred HHHHHHHHHHHHHhcC--hHHHHHHHHHHhCCCC
Q 018589 263 KSVFWALFGAIYLCFG--FPEVYRVLFEVFGMDP 294 (353)
Q Consensus 263 ADvfEALIGAIYlDsG--~e~v~~fv~~~l~~~i 294 (353)
+|..||+|+-.|+.+- .+++-.++..-+..++
T Consensus 70 Gd~aEA~iAyAWleG~is~eEaveilk~nl~~dv 103 (133)
T 1ztd_A 70 GDYAEALIAKAWLMGLISEREAVEIIKKNLYPEV 103 (133)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHTTCCGGG
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHhcCcHhh
Confidence 9999999999999985 4578888877665543
No 42
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=84.43 E-value=0.3 Score=44.75 Aligned_cols=38 Identities=5% Similarity=-0.236 Sum_probs=26.9
Q ss_pred CCCCCc-HHHHHhcc-CCCcceE--EEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 DPEDKE-CQPKLRRQ-LEDVDYV--SVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~-~~~~~Y~--~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..|+|+ ||| |+++ ...|.|+ ++.++| |+|...|++.|.
T Consensus 129 ~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~G------------p~h~~~F~~~v~ 170 (232)
T 2yt4_A 129 LLSPYQILHE-CLKRNHGMGDTSIKFEVVPG------------KNQKSEYVMACG 170 (232)
T ss_dssp CCCHHHHHHH-HHHTSSSCCCEEEECC------------------CCEEEEEEET
T ss_pred CCChhHHHHH-HHHcCCCCCceEEEEeecCC------------CCCCCEEEEEEE
Confidence 457899 999 7766 6678999 888899 999999999987
No 43
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=74.61 E-value=2.4 Score=36.82 Aligned_cols=38 Identities=8% Similarity=-0.173 Sum_probs=31.6
Q ss_pred CCCCCc-HHHHHhccCCCcceEEEeeecCccccchhhhhccCccceeEEEee
Q 018589 293 DPEDKE-CQPKLRRQLEDVDYVSVEFEGNKLTWQDVAAYKASFILLSFHSVT 343 (353)
Q Consensus 293 ~id~K~-Lqe~lq~~~~~~~Y~~i~e~G~~~s~~~i~~y~~~~~~lf~~~~~ 343 (353)
..+++. |+|++|+++..++|++ .++| |+|.+.|+.+|.
T Consensus 103 ~~n~~~~L~E~~qk~~~~~~Y~~-~~~G------------~~h~~~F~~~v~ 141 (179)
T 1qu6_A 103 MGNYIGLINRIAQKKRLTVNYEQ-CASG------------VHGPEGFHYKCK 141 (179)
T ss_dssp CCCCHHHHHHHHHHSCCEEEEEE-EEEC------------SSSSSEEEEEEE
T ss_pred CCCHHHHHHHHHHhcCCcceEEe-cCcC------------CCCCCeEEEEEE
Confidence 346888 9999999966779996 5788 999999999875
No 44
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=39.33 E-value=11 Score=25.78 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=14.3
Q ss_pred CCCCccccccccCCCccccchh
Q 018589 10 LVSDNISFSSAISPFPLQSSLK 31 (353)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (353)
+.+.+|||.||+|-+|++-+..
T Consensus 14 ~~~~~FScaSSLSAL~l~E~yi 35 (47)
T 1v18_B 14 STPDGFSCSSSLSALSLDEPFI 35 (47)
T ss_dssp SCCCCCC----CCCCCCSSCCC
T ss_pred cCCCCccchhccccccccchhh
Confidence 3778999999999999876643
Done!