BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018590
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
 pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
           From Pseudomonas Aeruginosa
          Length = 632

 Score = 35.8 bits (81), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 125/343 (36%), Gaps = 74/343 (21%)

Query: 28  VIVFGDSSVDAGNNNFIPTVARSNFQPYGRDFNGGRATGRFSN--------------GKI 73
           ++VFGDS  DAG     P  A     P G       +T RF+N              G  
Sbjct: 18  LVVFGDSLSDAGQ---FPDPA----GPAG-------STSRFTNRVGPTYQNGSGEIFGPT 63

Query: 74  ATDFISEALGVKP-TIPAYLDPAYNISDFATGVTFASAATG----YDNATSNVLAVIPMW 128
           A   +   LG+ P  + A   P       A G  +A         YD+ T+   ++I   
Sbjct: 64  APMLLGNQLGIAPGDLAASTSPVNAQQGIADGNNWAVGGYRTDQIYDSITAANGSLIERD 123

Query: 129 KELEYYKDYQKLLRAYLGETKANEIISEALHVISAGTNDFLENYYAMPAGPGSRRTQFTI 188
             L   +D   + RA  G          AL+ I+ G NDFL+            R    +
Sbjct: 124 NTLLRSRDGYLVDRARQGLGAD----PNALYYITGGGNDFLQG-----------RILNDV 168

Query: 189 TGYQDFLADIAQNFVKSLYNLGARKISLGGLPPMGCMPLERTTNLMGQHECVERYNNVAS 248
              Q   A    + V++L   GAR I +  LP +G  P      L             AS
Sbjct: 169 QAQQ--AAGRLVDSVQALQQAGARYIVVWLLPDLGLTPATFGGPLQ----------PFAS 216

Query: 249 QFNGKLSG-LVLKLNKELPGIKLVFSNPYFAFVQIIRRPALYGF--DVTEVACCATGMFE 305
           Q +G  +  L  +L++   G  ++  N      + +  PA +G   D   +  C +G   
Sbjct: 217 QLSGTFNAELTAQLSQA--GANVIPLNIPLLLKEGMANPASFGLAADQNLIGTCFSGN-- 272

Query: 306 MGYACARDSMF----SCTNADKYVFWDAFHPTQKTNRIIADHV 344
               C  +  +    S  +  K +F D+ HPT    R+IAD+ 
Sbjct: 273 ---GCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIADYT 312


>pdb|3IPV|A Chain A, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
 pdb|3IPV|C Chain C, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
          Length = 251

 Score = 28.1 bits (61), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 271 VFSNPYFAFVQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAF 330
           VF++P +  +         GFDV  ++   T  + +    A   + +  +A K +     
Sbjct: 134 VFTDPPYTHI---------GFDVNSISSIKTVKWSLANGEAAKVLITYNSAVKLLVASLV 184

Query: 331 HPTQKTNRIIADHV 344
           +P+ KT+ I+AD V
Sbjct: 185 YPSSKTSFILADIV 198


>pdb|3IPV|B Chain B, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
 pdb|3IPV|D Chain D, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
          Length = 239

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 271 VFSNPYFAFVQIIRRPALYGFDVTEVACCATGMFEMGYACARDSMFSCTNADKYVFWDAF 330
           VF++P +  +         GFDV  ++   T  + +    A   + +  +A K +     
Sbjct: 134 VFTDPPYTHI---------GFDVNSISSIKTVKWSLANGEAAKVLITYNSAVKLLVASLV 184

Query: 331 HPTQKTNRIIADHV 344
           +P+ KT+ I+AD V
Sbjct: 185 YPSSKTSFILADIV 198


>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
           Complexed With Ggpp
          Length = 306

 Score = 27.7 bits (60), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 133 YYKDYQKLLRAYLGETKANEIISEALHVISAGTNDFLENY 172
           Y +DY++++   L   KA E    ALH+   G N+   +Y
Sbjct: 28  YDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHY 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,509,577
Number of Sequences: 62578
Number of extensions: 440473
Number of successful extensions: 917
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 5
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)