BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018591
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 20/215 (9%)
Query: 121 KRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI 180
KR+ H S+ CL +I +GS D T++VW V + L ++ H +AV L + G+
Sbjct: 166 KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 225
Query: 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMG 240
+ + S D I W ++ +L+ +L GH+ K++ D +
Sbjct: 226 MVTCSKDRSIAVW--DMASPTDITLRRVLVGHR---AAVNVVDFDDKYIVSASGDRTIKV 280
Query: 241 WEGNV-EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
W + E VR H+ + C+ + SGS+D +I +W E G RV +
Sbjct: 281 WNTSTCEFVR-----TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACLRV--L 332
Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
GHE V+C++ + SG+ D ++VW
Sbjct: 333 EGHEELVRCIRFDNKRI------VSGAYDGKIKVW 361
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 121/319 (37%), Gaps = 67/319 (21%)
Query: 29 ILSASQGKDIIVWQQPDL---RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSR 85
I+S + I +W + L R+ T GH GSV + + T DS +RVW V
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILT--GHT-GSVLCLQYDERVIITGSSDSTVRVWDV-- 200
Query: 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS 145
N +++TL I H +++ L NG++ + S
Sbjct: 201 ---NTGEMLNTL---------------------------IHHCEAVLHLRFNNGMMVTCS 230
Query: 146 WDKTLKVWRVA---DLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHC 202
D+++ VW +A D+ + H AVN + + SAS D IK W S C
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW----NTSTC 286
Query: 203 HSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA 262
++ L GHK + V G SD + W+ L + HE
Sbjct: 287 EFVR-TLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL----EGHEEL 338
Query: 263 VLCVCLVGEFLCSGSADKSIGIW-------KREAFGKLCRVGAITGHEGPVKCLQASPNA 315
V C+ + + SG+ D I +W R G LC + + H G V LQ
Sbjct: 339 VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC-LRTLVEHSGRVFRLQFDE-- 395
Query: 316 VGGGFLLYSGSLDKSLRVW 334
F + S S D ++ +W
Sbjct: 396 ----FQIVSSSHDDTILIW 410
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 48/224 (21%)
Query: 126 EHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSAS 185
E + + CL + I SG D T+K+W L+C + H +V L + ++ + S
Sbjct: 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 190
Query: 186 ADGKIKAWGKELGK------SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVM 239
+D ++ W G+ HC ++ ++ ++G ++
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAV-----------------------LHLRFNNGMMV 227
Query: 240 GWEGNVEIVRWKLACETK--------AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG 291
+ I W +A T H AV V +++ S S D++I +W
Sbjct: 228 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST-- 285
Query: 292 KLCR-VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
C V + GH+ + CLQ L+ SGS D ++R+W
Sbjct: 286 --CEFVRTLNGHKRGIACLQYRDR------LVVSGSSDNTIRLW 321
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 81/204 (39%), Gaps = 21/204 (10%)
Query: 131 ISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKI 190
I+CL I SGS D TLKVW KCL ++ H V I+ S S D +
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL 181
Query: 191 KAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRW 250
K W E G+ H+L G K V G D + W +I
Sbjct: 182 KVWNAETGEC-IHTLYG-------HTSTVRCMHLHEKRVVSGSRDATLRVW----DIETG 229
Query: 251 KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310
+ H AV CV G + SG+ D + +W E + C + + GH V LQ
Sbjct: 230 QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--ETC-LHTLQGHTNRVYSLQ 286
Query: 311 ASPNAVGGGFLLYSGSLDKSLRVW 334
G + SGSLD S+RVW
Sbjct: 287 FD------GIHVVSGSLDTSIRVW 304
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 116/305 (38%), Gaps = 57/305 (18%)
Query: 53 GHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN 112
GH D + + GN++ + D+ ++VW GK +
Sbjct: 116 GHDDHVITCLQFCGNRIVSGSDDNTLKVWSA-------------------VTGKCL---- 152
Query: 113 YVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN 172
R + H + + + +I SGS D+TLKVW +C+ ++ H V
Sbjct: 153 ---------RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 203
Query: 173 GLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGG 232
+ + V S S D ++ W E G+ +L GH G+ V G
Sbjct: 204 CMHLHEKRVVSGSRDATLRVWDIETGQC-----LHVLMGH---VAAVRCVQYDGRRVVSG 255
Query: 233 GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292
D V W+ E L + H V + G + SGS D SI +W E
Sbjct: 256 AYDFMVKVWDPETETCLHTL----QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN- 310
Query: 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK----QSSTSDSEEK 348
C + +TGH+ ++ N +L SG+ D ++++W + Q+ ++ +
Sbjct: 311 -C-IHTLTGHQSLTSGMELKDN------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 362
Query: 349 SIISC 353
S ++C
Sbjct: 363 SAVTC 367
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 127 HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA---HDDAVNGLVASKGIVYS 183
H S + + + ++ SG+ D T+K+W + +CL++++ H AV L +K V +
Sbjct: 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVIT 377
Query: 184 ASADGKIKAWGKELGK 199
+S DG +K W + G+
Sbjct: 378 SSDDGTVKLWDLKTGE 393
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 69 VFTAHQDSRIRVWKVSRSS-------ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK 121
+ T +D+ + VWK+ + S E+ + LV P Y ++
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG----------- 268
Query: 122 RLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG 179
H S+ ++ + ++ SGS+D TL VW VA +KCL + H D + + +
Sbjct: 269 -----HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVM 239
SAS D I+ W E G+ L L+GH K++ +DG +
Sbjct: 324 RCISASMDTTIRIWDLENGE-----LMYTLQGH---TALVGLLRLSDKFLVSAAADGSIR 375
Query: 240 GWEGN 244
GW+ N
Sbjct: 376 GWDAN 380
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 88/233 (37%), Gaps = 49/233 (21%)
Query: 131 ISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL-VASKGIVYSASADGK 189
I+CL + + +G+ DK ++V+ + K L + HD V L A GI+ S S D
Sbjct: 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 190 IKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXG-KWVYGGGSDGFVMGW----EGN 244
++ W ++ K C + EGH K++ G D + W E +
Sbjct: 185 VRVW--DIKKGCC---THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239
Query: 245 V----EIVRWKLACET-----------KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA 289
V E + L T + H +V V G + SGS D ++ +W
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299
Query: 290 F-------GKLCRV-GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
G R+ I HE +C+ S S+D ++R+W
Sbjct: 300 MKCLYILSGHTDRIYSTIYDHERK-RCI--------------SASMDTTIRIW 337
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 227 KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIW 285
+V G D + ++ + K + H+ V + G L SGS D+++ +W
Sbjct: 133 NYVITGADDKMIRVYDS----INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW 188
Query: 286 KREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345
K C GH V+CL + +GS D +L VW + K+SS D
Sbjct: 189 D---IKKGCCTHVFEGHNSTVRCLDIV--EYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243
Query: 346 EEK 348
E+
Sbjct: 244 GEE 246
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 40/220 (18%)
Query: 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN--GLVASKGIVY--SASADGKIKAWG 194
G++ SGS D+T++VW + C + H+ V +V K I Y + S D + W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 195 -------KELGKSHCHSL-----------KGILEGHKXXXXXXXXXXXXGKWVYGGGSDG 236
+ G+ H + L G+L GH G V G D
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH---MASVRTVSGHGNIVVSGSYDN 290
Query: 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWKREAFGKLC 294
++ W ++ + K H + E S S D +I IW E G+L
Sbjct: 291 TLIVW----DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GEL- 344
Query: 295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
+ + GH V L+ S L S + D S+R W
Sbjct: 345 -MYTLQGHTALVGLLRLSDK------FLVSAAADGSIRGW 377
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 257 KAHEMAVL-CVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA 315
+ H +V+ C+ ++ +G+ DK I ++ L + ++GH+G V L+ A
Sbjct: 118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKY---A 171
Query: 316 VGGGFLLYSGSLDKSLRVWWVSK 338
GG +L SGS D+++RVW + K
Sbjct: 172 HGG--ILVSGSTDRTVRVWDIKK 192
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 135/331 (40%), Gaps = 50/331 (15%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV--TVGNKVFTAHQDSRIRVWKV 83
G+ I SAS K + +W + + T GH SV V G + +A D +++W
Sbjct: 233 GQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 84 SRSSENVFRLVDTLP--TTKDYLGKFMKQSNYVQTRRHHK--RLWIEHADSISCLTVYNG 139
+ +L+ TL ++ + F + + K +LW + + LT ++
Sbjct: 292 N------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 140 ------------LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSAS 185
I S S DKT+K+W + + L+++ H +V G+ S + SAS
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Query: 186 ADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNV 245
D +K W + L L GH + + D V W N
Sbjct: 405 DDKTVKLWNRN------GQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG 457
Query: 246 EIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
++++ H +V V G+ + S S DK++ +W R G+L + +TGH
Sbjct: 458 QLLQ-----TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT--LTGHS 508
Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
V+ + SP+ G + S S DK++++W
Sbjct: 509 SSVRGVAFSPD----GQTIASASDDKTVKLW 535
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 135/331 (40%), Gaps = 50/331 (15%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV--TVGNKVFTAHQDSRIRVWKV 83
G+ I SAS K + +W + + T GH SV V G + +A D +++W
Sbjct: 110 GQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNR 168
Query: 84 SRSSENVFRLVDTLP--TTKDYLGKFMKQSNYVQTRRHHK--RLWIEHADSISCLTVYNG 139
+ +L+ TL ++ + F + + K +LW + + LT ++
Sbjct: 169 N------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 140 ------------LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV--ASKGIVYSAS 185
I S S DKT+K+W + + L+++ H +VNG+ + SAS
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 186 ADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNV 245
D +K W + L L GH G+ + D V W N
Sbjct: 282 DDKTVKLWNRN------GQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNG 334
Query: 246 EIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
+ ++ H +V V G+ + S S DK++ +W R G+L + +TGH
Sbjct: 335 QHLQ-----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT--LTGHS 385
Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
V+ + SP+ G + S S DK++++W
Sbjct: 386 SSVRGVAFSPD----GQTIASASDDKTVKLW 412
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 133/331 (40%), Gaps = 50/331 (15%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV--TVGNKVFTAHQDSRIRVWKV 83
G+ I SAS K + +W + + T GH SV+ V G + +A D +++W
Sbjct: 69 GQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 84 SRSSENVFRLVDTLP--TTKDYLGKFMKQSNYVQTRRHHK--RLWIEHADSISCLTVYNG 139
+ +L+ TL ++ + F + + K +LW + + LT ++
Sbjct: 128 N------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 181
Query: 140 ------------LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSAS 185
I S S DKT+K+W + + L+++ H +V G+ S + SAS
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 186 ADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNV 245
D +K W + L L GH G+ + D V W N
Sbjct: 241 DDKTVKLWNRN------GQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNG 293
Query: 246 EIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
++++ H +V V G+ + S S DK++ +W R + +TGH
Sbjct: 294 QLLQ-----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QHLQTLTGHS 344
Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
V + SP+ G + S S DK++++W
Sbjct: 345 SSVWGVAFSPD----GQTIASASDDKTVKLW 371
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 56/334 (16%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV--TVGNKVFTAHQDSRIRVWKV 83
G+ I SAS K + +W + + T GH SV V G + +A D +++W
Sbjct: 274 GQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWN- 331
Query: 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK--RLWIEHADSISCLTVYNG-- 139
R+ +++ L T ++ + F + + K +LW + + LT ++
Sbjct: 332 -RNGQHLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 388
Query: 140 ----------LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASAD 187
I S S DKT+K+W + + L+++ H +V G+ S + SAS D
Sbjct: 389 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447
Query: 188 GKIKAWGK-----ELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWE 242
+K W + + H S++G+ G+ + D V W
Sbjct: 448 KTVKLWNRNGQLLQTLTGHSSSVRGV------------AFSPDGQTIASASDDKTVKLWN 495
Query: 243 GNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT 300
N ++++ H +V V G+ + S S DK++ +W R G+L + +T
Sbjct: 496 RNGQLLQ-----TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT--LT 546
Query: 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
GH V + SP+ G + S S DK++++W
Sbjct: 547 GHSSSVWGVAFSPD----GQTIASASSDKTVKLW 576
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 136/334 (40%), Gaps = 56/334 (16%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV--TVGNKVFTAHQDSRIRVWKV 83
G+ I SAS K + +W + + T GH SV V G + +A D +++W
Sbjct: 28 GQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWN- 85
Query: 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK--RLWIEHADSISCLTVYNG-- 139
R+ + + L + + F + + K +LW + + LT ++
Sbjct: 86 -RNGQLLQTLTGHSSSVRGV--AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 142
Query: 140 ----------LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASAD 187
I S S DKT+K+W + + L+++ H +V G+ S + SAS D
Sbjct: 143 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 201
Query: 188 GKIKAWGK-----ELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWE 242
+K W + + H S++G+ G+ + D V W
Sbjct: 202 KTVKLWNRNGQLLQTLTGHSSSVRGV------------AFSPDGQTIASASDDKTVKLWN 249
Query: 243 GNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT 300
N ++++ H +V V G+ + S S DK++ +W R G+L + +T
Sbjct: 250 RNGQLLQ-----TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQT--LT 300
Query: 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
GH V + SP+ G + S S DK++++W
Sbjct: 301 GHSSSVWGVAFSPD----GQTIASASDDKTVKLW 330
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 134/329 (40%), Gaps = 46/329 (13%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV--TVGNKVFTAHQDSRIRVWKV 83
G+ I SAS K + +W + + T GH SV V G + +A D +++W
Sbjct: 151 GQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWN- 208
Query: 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK--RLWIEHADSISCLTVY---- 137
R+ + + L + + F + + K +LW + + LT +
Sbjct: 209 -RNGQLLQTLTGHSSSVRGV--AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 265
Query: 138 NGL--------IYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASAD 187
NG+ I S S DKT+K+W + + L+++ H +V G+ S + SAS D
Sbjct: 266 NGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 188 GKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEI 247
+K W + H +L G G+ + D V W N ++
Sbjct: 325 KTVKLWNRN--GQHLQTLTG-----HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 377
Query: 248 VRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP 305
++ H +V V G+ + S S DK++ +W R G+L + +TGH
Sbjct: 378 LQ-----TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT--LTGHSSS 428
Query: 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
V + SP+ + S S DK++++W
Sbjct: 429 VWGVAFSPDDQ----TIASASDDKTVKLW 453
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 158 LKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXX 215
+K ++AH +V G+ S + SAS D +K W + L L GH
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQTLTGHSSS 59
Query: 216 XXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFL 273
G+ + D V W N ++++ H +V V G+ +
Sbjct: 60 VWGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVRGVAFSPDGQTI 113
Query: 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333
S S DK++ +W R G+L + +TGH V + SP+ G + S S DK++++
Sbjct: 114 ASASDDKTVKLWNRN--GQLLQT--LTGHSSSVWGVAFSPD----GQTIASASDDKTVKL 165
Query: 334 W 334
W
Sbjct: 166 W 166
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 33/185 (17%)
Query: 69 VFTAHQDSRIRVWKVSRSS-------ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK 121
+ T +D+ + VWK+ + S E+ + LV P Y ++
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG----------- 268
Query: 122 RLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG 179
H S+ ++ + ++ SGS+D TL VW VA KCL + H D + + +
Sbjct: 269 -----HXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVM 239
SAS D I+ W E G+ L L+GH K++ +DG +
Sbjct: 324 RCISASXDTTIRIWDLENGE-----LXYTLQGH---TALVGLLRLSDKFLVSAAADGSIR 375
Query: 240 GWEGN 244
GW+ N
Sbjct: 376 GWDAN 380
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 37/210 (17%)
Query: 131 ISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL-VASKGIVYSASADGK 189
I+CL + + +G+ DK ++V+ + K L + HD V L A GI+ S S D
Sbjct: 125 ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 190 IKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXG-KWVYGGGSDGFVMGWEGNVEIV 248
++ W ++ K C + EGH K++ G D +
Sbjct: 185 VRVW--DIKKGCC---THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN---------TLH 230
Query: 249 RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC 308
WKL E+ + GE D + E VG + GH V+
Sbjct: 231 VWKLPKESSVPDH--------GE-----EHDYPLVFHTPEENPYF--VGVLRGHXASVRT 275
Query: 309 LQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338
+ G G ++ SGS D +L VW V++
Sbjct: 276 VS------GHGNIVVSGSYDNTLIVWDVAQ 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
G L SGS D+++ +W K C GH V+CL + +GS D
Sbjct: 173 GGILVSGSTDRTVRVWD---IKKGCCTHVFEGHNSTVRCLDIV--EYKNIKYIVTGSRDN 227
Query: 330 SLRVWWVSKQSSTSDSEEK 348
+L VW + K+SS D E+
Sbjct: 228 TLHVWKLPKESSVPDHGEE 246
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 40/220 (18%)
Query: 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN--GLVASKGIVY--SASADGKIKAWG 194
G++ SGS D+T++VW + C + H+ V +V K I Y + S D + W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 195 -------KELGKSHCHSL-----------KGILEGHKXXXXXXXXXXXXGKWVYGGGSDG 236
+ G+ H + L G+L GH G V G D
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHX---ASVRTVSGHGNIVVSGSYDN 290
Query: 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWKREAFGKLC 294
++ W ++ + K H + E S S D +I IW E G+L
Sbjct: 291 TLIVW----DVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN-GELX 345
Query: 295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
+ GH V L+ S L S + D S+R W
Sbjct: 346 Y--TLQGHTALVGLLRLSDK------FLVSAAADGSIRGW 377
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 257 KAHEMAVL-CVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA 315
+ H +V+ C+ ++ +G+ DK I ++ L + ++GH+G V L+ A
Sbjct: 118 RGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQ---LSGHDGGVWALKY---A 171
Query: 316 VGGGFLLYSGSLDKSLRVWWVSK 338
GG +L SGS D+++RVW + K
Sbjct: 172 HGG--ILVSGSTDRTVRVWDIKK 192
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 59/242 (24%)
Query: 127 HADSISCLTVYNG--LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN--GLVASKGIVY 182
H DS+ ++ + L+ S S D T+K+W +C+ ++ HD V+ ++ + +
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWV--YGGGSDGFVMG 240
SAS D IK W E+ +C GH+ +WV DG ++
Sbjct: 209 SASRDKTIKMW--EVQTGYC---VKTFTGHR-------------EWVRMVRPNQDGTLIA 250
Query: 241 WEGNVEIVR-WKLA-----CETKAHEMAVLCVCLV----------------------GEF 272
N + VR W +A E + H V C+ G F
Sbjct: 251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310
Query: 273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332
L SGS DK+I +W + +C + + GH+ V+ + GG F+L S + DK+LR
Sbjct: 311 LLSGSRDKTIKMW--DVSTGMC-LMTLVGHDNWVRGVLFHS---GGKFIL-SCADDKTLR 363
Query: 333 VW 334
VW
Sbjct: 364 VW 365
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 180 IVYSASADGKIKAWGKELG------KSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGG 233
++ SAS D IK W E G K H S++ I H GK +
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH------------SGKLLASCS 169
Query: 234 SDGFVMGWEGN-VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292
+D + W+ E +R H ++ + + G+ + S S DK+I +W E
Sbjct: 170 ADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW--EVQTG 224
Query: 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV-SKQSSTSDSEEKSII 351
C V TGH V+ ++ PN G L+ S S D+++RVW V +K+ E + ++
Sbjct: 225 YC-VKTFTGHREWVRMVR--PNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 352 SC 353
C
Sbjct: 280 EC 281
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 140 LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVY--SASADGKIKAW 193
I S + DKTL+VW + +C++++ AH+ V L K Y + S D +K W
Sbjct: 352 FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 31 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 90
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 91 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 118
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 179 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 229
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 286
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 287 EN----IIASAALENDKTIKLW 304
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 11 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 65
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 66 DVAWSSDSN----LLVSASDDKTLKIWDVS 91
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 36 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 95
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 96 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 123
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 184 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 234
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 291
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 292 EN----IIASAALENDKTIKLW 309
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 16 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 70
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 71 DVAWSSDSN----LLVSASDDKTLKIWDVS 96
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 95 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 122
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 183 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 233
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 290
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 291 E----NIIASAALENDKTIKLW 308
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 15 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 69
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 70 DVAWSSDS----NLLVSASDDKTLKIWDVS 95
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 95 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 122
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 183 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 233
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 290
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 291 E----NIIASAALENDKTIKLW 308
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 15 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 69
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 70 DVAWSSDS----NLLVSASDDKTLKIWDVS 95
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 52 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 111
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 112 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 139
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 200 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 250
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 307
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 308 EN----IIASAALENDKTIKLW 325
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 32 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 86
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 87 DVAWSSDSN----LLVSASDDKTLKIWDVS 112
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 100
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 101 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 128
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 189 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 239
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 296
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 297 EN----IIASAALENDKTIKLW 314
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 21 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 75
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 76 DVAWSSDSN----LLVSASDDKTLKIWDVS 101
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 57 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 116
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 117 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 144
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 205 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 255
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 312
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 313 E----NIIASAALENDKTIKLW 330
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 37 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 91
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 92 DVAWSSDS----NLLVSASDDKTLKIWDVS 117
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 34 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 93
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 94 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 121
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 182 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 232
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 289
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 290 E----NIIASAALENDKTIKLW 307
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 14 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 68
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 69 DVAWSSDS----NLLVSASDDKTLKIWDVS 94
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 59 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 118
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 119 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 146
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 207 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 257
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 314
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 315 E----NIIASAALENDKTIKLW 332
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 39 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 93
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 94 DVAWSSDS----NLLVSASDDKTLKIWDVS 119
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 100
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 101 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 128
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 189 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 239
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 296
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 297 E----NIIASAALENDKTIKLW 314
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 21 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 75
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 76 DVAWSSDS----NLLVSASDDKTLKIWDVS 101
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 40 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 99
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 100 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 127
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 188 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 238
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 295
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 296 E----NIIASAALENDKTIKLW 313
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 20 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 74
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 75 DVAWSSDS----NLLVSASDDKTLKIWDVS 100
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 100
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 101 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 128
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 189 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 239
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 296
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 297 E----NIIASAALENDKTIKLW 314
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 21 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 75
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 76 DVAWSSDS----NLLVSASDDKTLKIWDVS 101
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 52/275 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 98 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W + + K H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREA 289
+ C+ G+++ SGS D + IW +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 194 GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLA 253
G E K + ++LK L GH G+W+ +D + W K
Sbjct: 8 GSEFVKPN-YALKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFE 61
Query: 254 CETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311
H++ + V + L S S DK++ IW + GK + + GH V C
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKT--LKGHSNYVFCCNF 118
Query: 312 SPNAVGGGFLLYSGSLDKSLRVW 334
+P + L+ SGS D+S+R+W
Sbjct: 119 NPQSN----LIVSGSFDESVRIW 137
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 18 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 72
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 73 DVAWSSDSN----LLVSASDDKTLKIWDVS 98
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 19/154 (12%)
Query: 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWE 242
S+SAD IK WG GK + + GHK V D + W
Sbjct: 43 SSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLV-SASDDKTLKIW- 95
Query: 243 GNVEIVRWKLACETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWKREAFGKLCRVGAIT 300
++ K K H V C + + SGS D+S+ IW + GK + +
Sbjct: 96 ---DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKT--LP 149
Query: 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
H PV + + + G L+ S S D R+W
Sbjct: 150 AHSDPVSAVHFNRD----GSLIVSSSYDGLCRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 52/275 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 98 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W + + K H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREA 289
+ C+ G+++ SGS D + IW +
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 194 GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLA 253
G E K + ++LK L GH G+W+ +D + W K
Sbjct: 8 GSEFVKPN-YALKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YDGKFE 61
Query: 254 CETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311
H++ + V + L S S DK++ IW + GK + + GH V C
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKT--LKGHSNYVFCCNF 118
Query: 312 SPNAVGGGFLLYSGSLDKSLRVW 334
+P + L+ SGS D+S+R+W
Sbjct: 119 NPQSN----LIVSGSFDESVRIW 137
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L S SADK I IW GK + I+GH+ +
Sbjct: 18 LKFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 72
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 73 DVAWSSDSN----LLVSASDDKTLKIWDVS 98
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 19/154 (12%)
Query: 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWE 242
S+SAD IK WG GK + + GHK V D + W
Sbjct: 43 SSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLV-SASDDKTLKIW- 95
Query: 243 GNVEIVRWKLACETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWKREAFGKLCRVGAIT 300
++ K K H V C + + SGS D+S+ IW + GK + +
Sbjct: 96 ---DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKT--LP 149
Query: 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
H PV + + + G L+ S S D R+W
Sbjct: 150 AHSDPVSAVHFNRD----GSLIVSSSYDGLCRIW 179
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ ++S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 38 GEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 98 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V KCL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W + + K H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 293
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 294 EN----IIASAALENDKTIKLW 311
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
+++ LA TKA ++ + GE+L + SADK I IW GK + I+GH+ +
Sbjct: 18 LKFTLAGHTKA--VSSVKFSPNGEWLAASSADKLIKIWGAYD-GKFEKT--ISGHKLGIS 72
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+ S ++ LL S S DK+L++W VS
Sbjct: 73 DVAWSSDSN----LLVSASDDKTLKIWDVS 98
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 98 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V CL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 293
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 294 E----NIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
GE+L S SADK I IW GK + I+GH+ + + S ++ LL S S DK
Sbjct: 38 GEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGISDVAWSSDSN----LLVSASDDK 90
Query: 330 SLRVWWVS 337
+L++W VS
Sbjct: 91 TLKIWDVS 98
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 61/322 (18%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
GE++ S+S K I +W D + T GH G S A + N + +A D +++W V
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84 SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
S + + TL +Y+ F QSN LI
Sbjct: 98 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
SGS+D+++++W V CL+++ AH D V+ + ++ ++ S+S DG + W G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
LK +++ GK++ D + W+ + + K H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNDLKLWDYS----KGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
+ C+ G+++ SGS D + IW + V + GH V P
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 293
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
++ S +L DK++++W
Sbjct: 294 E----NIIASAALENDKTIKLW 311
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
GE+L S SADK I IW GK + I+GH+ + + S ++ LL S S DK
Sbjct: 38 GEWLASSSADKLIKIWGAYD-GKFEKT--ISGHKLGISDVAWSSDSN----LLVSASDDK 90
Query: 330 SLRVWWVS 337
+L++W VS
Sbjct: 91 TLKIWDVS 98
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 120 HKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178
HK L +H + C+ N G + +KT +V+RV+D + + + D A N +
Sbjct: 58 HKSL--DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARL-SDDSAANKDPENL 114
Query: 179 GIVYSASAD-----------GKIKAWGKE-----LGKSHCHSLKGILEGHKXXXXXXXXX 222
S S+D GK A G E + + IL+GH+
Sbjct: 115 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 174
Query: 223 XXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSI 282
K V G G D V W+ L+ E +AV G+++ +GS D+++
Sbjct: 175 PSGDKLVSGSG-DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD--GKYIAAGSLDRAV 231
Query: 283 GIWKREAFGKLCRVGAI----TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338
+W E + R+ + TGH+ V + + + G + SGSLD+S+++W +
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQN 287
Query: 339 QSSTSDSEEKSIISC 353
++ SDS+ + +C
Sbjct: 288 ANNKSDSKTPNSGTC 302
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 141 IYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKEL 197
+ SGS D+T+++W + +C ++ +D V + S G + + S D ++ W E
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 198 G--KSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACE 255
G S GHK G+ V G D V W N++ K +
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLW--NLQNANNKSDSK 295
Query: 256 TK----------AHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
T H+ VL V E++ SGS D+ + W +++ L + GH
Sbjct: 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHR 352
Query: 304 GPVKCLQ-ASPNAVGGGFLLY-SGSLDKSLRVW 334
V + A+ +++G + ++ +GS D R+W
Sbjct: 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 42/289 (14%)
Query: 66 GNKVFTAHQDSRIRVWKVSRSSEN-----------VFRLVDTLPTTKDYLGKFMKQSNYV 114
G+ TA D IRVW+ + +N VF+ +T+ D + + +
Sbjct: 901 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI----RGLQLI 956
Query: 115 QTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174
+ E S CL+ + + G D +K+ + + + S H AV +
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1016
Query: 175 --VASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXG--KWVY 230
A + S+S D I+ W + G L+ H+ W +
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLLSWSF 1070
Query: 231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF--LCSGSADKSIGIWKRE 288
DG V W ++ ++ + H+ VL + + S SADK+ IW
Sbjct: 1071 ----DGTVKVW----NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW--- 1119
Query: 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+F L + + GH G V+C S + G LL +G + +R+W VS
Sbjct: 1120 SFDLLSPLHELKGHNGCVRCSAFSLD----GILLATGDDNGEIRIWNVS 1164
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 13/177 (7%)
Query: 115 QTRRHHKRLWIE-HADSI--SCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171
+T ++ RL + H D++ +C + I S DKTL+V++ + L IKAH+D V
Sbjct: 608 KTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV 667
Query: 172 N--GLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWV 229
+ + + SAD K+K W GK L + H +
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 230 YGGGSDGFVMG-WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIW 285
GS+ F + W+ N + R + T + E L S SAD ++ +W
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP--DDELLASCSADGTLRLW 777
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVW 81
E++ + I + + P+ R+F+ G G KAV + G + ++ +DS I+VW
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSS---GVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Query: 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY-------------VQTRRHHKRLWIEHA 128
++ + VF L T KD+ + ++ S V T R +
Sbjct: 1038 NW-QTGDYVF-LQAHQETVKDF--RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1093
Query: 129 DSISCLTVYNGLIYSG-SWDKTLKVWRVADLKCLESIKAHDDAVN-GLVASKGIVYSASA 186
+SC + +S S DKT K+W L L +K H+ V + GI+ +
Sbjct: 1094 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD 1153
Query: 187 D-GKIKAWGKELGK 199
D G+I+ W G+
Sbjct: 1154 DNGEIRIWNVSDGQ 1167
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 42/289 (14%)
Query: 66 GNKVFTAHQDSRIRVWKVSRSSEN-----------VFRLVDTLPTTKDYLGKFMKQSNYV 114
G+ TA D IRVW+ + +N VF+ +T+ D + + +
Sbjct: 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI----RGLQLI 949
Query: 115 QTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174
+ E S CL+ + + G D +K+ + + + S H AV +
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009
Query: 175 --VASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXG--KWVY 230
A + S+S D I+ W + G L+ H+ W +
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLLSWSF 1063
Query: 231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF--LCSGSADKSIGIWKRE 288
DG V W ++ ++ + H+ VL + + S SADK+ IW
Sbjct: 1064 ----DGTVKVW----NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW--- 1112
Query: 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
+F L + + GH G V+C S + G LL +G + +R+W VS
Sbjct: 1113 SFDLLSPLHELKGHNGCVRCSAFSLD----GILLATGDDNGEIRIWNVS 1157
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 13/177 (7%)
Query: 115 QTRRHHKRLWIE-HADSI--SCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171
+T ++ RL + H D++ +C + I S DKTL+V++ + L IKAH+D V
Sbjct: 601 KTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV 660
Query: 172 N--GLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWV 229
+ + + SAD K+K W GK L + H +
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNHLL 715
Query: 230 YGGGSDGFVMG-WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIW 285
GS+ F + W+ N + R + T + E L S SAD ++ +W
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP--DDELLASCSADGTLRLW 770
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVW 81
E++ + I + + P+ R+F+ G G KAV + G + ++ +DS I+VW
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRVFSS---GVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Query: 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY-------------VQTRRHHKRLWIEHA 128
++ + VF L T KD+ + ++ S V T R +
Sbjct: 1031 NW-QTGDYVF-LQAHQETVKDF--RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG 1086
Query: 129 DSISCLTVYNGLIYSG-SWDKTLKVWRVADLKCLESIKAHDDAVN-GLVASKGIVYSASA 186
+SC + +S S DKT K+W L L +K H+ V + GI+ +
Sbjct: 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD 1146
Query: 187 D-GKIKAWGKELGK 199
D G+I+ W G+
Sbjct: 1147 DNGEIRIWNVSDGQ 1160
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV---NGLVASKGIV 181
I H ++ L+ +G++ SGSWDKT KVW+ L + +++AH+ +V + S+
Sbjct: 101 IGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKF 158
Query: 182 YSASADGKIKAWGKE 196
+ASAD IK W +
Sbjct: 159 LTASADKTIKLWQND 173
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVK---------AVVTVGNKVFTAHQDSR 77
+ ILSAS+ K II+W+ R T +G +++ + + G + D
Sbjct: 52 DMILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109
Query: 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN---YVQTRRHHKRLWI--------- 125
+R+W ++ + R V TKD L N +R +LW
Sbjct: 110 LRLWDLT-TGTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 126 ---EHADSISCL----TVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178
H++ +SC+ N +I S WDK +KVW +A+ K + H +N + S
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225
Query: 179 --GIVYSASADGKIKAWGKELGKSHCHSLKG 207
+ S DG+ W GK H ++L G
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGK-HLYTLDG 255
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 27/170 (15%)
Query: 204 SLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKL---ACETKAHE 260
+L+G L+GH + D ++ W+ + + + A +H
Sbjct: 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 88
Query: 261 MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF 320
++ + + G+F SGS D ++ +W G R GH V + S +
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTT-GTTTR--RFVGHTKDVLSVAFSSD----NR 141
Query: 321 LLYSGSLDKSLRVW-----------------WVSKQSSTSDSEEKSIISC 353
+ SGS DK++++W WVS + +S I+SC
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVK---------AVVTVGNKVFTAHQDSR 77
+ ILSAS+ K II+W+ R T +G +++ + + G + D
Sbjct: 29 DMILSASRDKTIIMWKL--TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN---YVQTRRHHKRLWI--------- 125
+R+W ++ + R V TKD L N +R +LW
Sbjct: 87 LRLWDLT-TGTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 126 ---EHADSISCL----TVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178
H++ +SC+ N +I S WDK +KVW +A+ K + H +N + S
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202
Query: 179 --GIVYSASADGKIKAWGKELGKSHCHSLKG 207
+ S DG+ W GK H ++L G
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGK-HLYTLDG 232
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 27/170 (15%)
Query: 204 SLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKL---ACETKAHE 260
+L+G L+GH + D ++ W+ + + + A +H
Sbjct: 6 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF 65
Query: 261 MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF 320
++ + + G+F SGS D ++ +W G R GH V + S +
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTT-GTTTR--RFVGHTKDVLSVAFSSD----NR 118
Query: 321 LLYSGSLDKSLRVW-----------------WVSKQSSTSDSEEKSIISC 353
+ SGS DK++++W WVS + +S I+SC
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 141 IYSGSWDKTLKVWRVADLKCLESIKAH---DDAVNGLVASKGIVYSASADGKIKAWGKEL 197
I S S DKT+K+W VA LK ++I +D G++ +K + S SA+G I EL
Sbjct: 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313
Query: 198 GKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWE 242
G S+ + GH GK ++ ++G + W+
Sbjct: 314 G-----SIDQVRYGHN-KAITALSSSADGKTLFSADAEGHINSWD 352
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 254 CETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311
+T H + V G FL + + + + +L + T H V C+
Sbjct: 485 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 544
Query: 312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340
SP+ V L +GSLD S+ VW ++K S
Sbjct: 545 SPDNV----RLATGSLDNSVIVWNMNKPS 569
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 14/207 (6%)
Query: 138 NGLIYSGSWDKTLKVWRVA--DLKCLESIK--AHDDAVNGLV--ASKGIVYSASADGKIK 191
G++ +GS D+ +K+ V D ++ + AH A+ + ++ + S D +
Sbjct: 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83
Query: 192 AWGKE--LGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVR 249
W KE ++ L I+EGH+ G ++ D V WE +
Sbjct: 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIWETDESGEE 142
Query: 250 WKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
++ + H V V L S S D ++ IWK C V + GHEG V
Sbjct: 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC-VAVLNGHEGTV- 200
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVW 334
+ + G F L SGS D ++RVW
Sbjct: 201 -WSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 268 LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL 327
L G L +G D +I +W K RV + GHE V L+ SP+ G SGS
Sbjct: 294 LSGRLLFAGYNDYTINVWD---VLKGSRVSILFGHENRVSTLRVSPD----GTAFCSGSW 346
Query: 328 DKSLRVW 334
D +LRVW
Sbjct: 347 DHTLRVW 353
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332
+ + S D + +W E+ G+L + + GH V CL +P+ G F+ SG DK
Sbjct: 169 ILTASGDGTCALWDVES-GQLLQ--SFHGHGADVLCLDLAPSETGNTFV--SGGCDKKAM 223
Query: 333 VW 334
VW
Sbjct: 224 VW 225
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
G +L S S D + IWK+ C V + GHE VK + +P+ G LL + S DK
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFEC-VTTLEGHENEVKSVAWAPS----GNLLATCSRDK 127
Query: 330 SLRVWWVSKQ 339
S+ VW V ++
Sbjct: 128 SVWVWEVDEE 137
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 10/180 (5%)
Query: 158 LKCLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKX 214
L L + AH D+ +A + ++ S D +I+ WG E C S+ + EGH+
Sbjct: 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV--LSEGHQR 62
Query: 215 XXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274
G ++ D W+ N + E +E+ + G L
Sbjct: 63 TVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA 121
Query: 275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
+ S DKS+ +W+ + + V + H VK + P+ LL S S D +++++
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE----LLASASYDDTVKLY 177
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 56/200 (28%)
Query: 139 GLIYSGSWDKTLKVWR--VADLKCLESIKAHDDAVNGL--VASKGIVYSASADGKIKAWG 194
+ S S+D T +W+ D +C+ +++ H++ V + S ++ + S D + W
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW- 132
Query: 195 KELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLAC 254
E+ + + +L H +V+ V W +
Sbjct: 133 -EVDEEDEYECVSVLNSHTQ-----------------------------DVKHVVWHPS- 161
Query: 255 ETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
E L S S D ++ +++ E +C + GHE V L P+
Sbjct: 162 ---------------QELLASASYDDTVKLYREEEDDWVC-CATLEGHESTVWSLAFDPS 205
Query: 315 AVGGGFLLYSGSLDKSLRVW 334
G L S S D+++R+W
Sbjct: 206 ----GQRLASCSDDRTVRIW 221
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 39/183 (21%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTVGNK-VFTAHQDSRIRVWKV 83
G F +SAS + +W + + KF GH + + N+ + + +D+ +RVW V
Sbjct: 79 GNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Query: 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGL--- 140
G+ M H H D +SC+ L
Sbjct: 139 K--------------------GECM-----------HTLSRGAHTDWVSCVRFSPSLDAP 167
Query: 141 -IYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKEL 197
I SG WD +KVW +A + + +K H + V + S + S+ DG + W
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 198 GKS 200
G++
Sbjct: 228 GEA 230
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 29/215 (13%)
Query: 138 NGLIYSGSWDKTLKVWRVADLKCLESIK--AHDDAVNGLVASKG----IVYSASADGKIK 191
N I SG D L+VW V +C+ ++ AH D V+ + S ++ S D +K
Sbjct: 121 NRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 192 AWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWK 251
W G+ L L+GH G DG W+ + + +
Sbjct: 180 VWDLATGR-----LVTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLWD----LTKGE 229
Query: 252 LACETKA-HEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310
E A + +C ++C+ + +K I I+ E K V H+G K +
Sbjct: 230 ALSEMAAGAPINQICFSPNRYWMCAAT-EKGIRIFDLE--NKDIIVELAPEHQGSKKIV- 285
Query: 311 ASPNAV-----GGGFLLYSGSLDKSLRVWWVSKQS 340
P V G LYSG D +RVW VS+ +
Sbjct: 286 --PECVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 65/172 (37%), Gaps = 21/172 (12%)
Query: 127 HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSA 184
H S L+ N S SWDKTL++W + + H V + S + SA
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 185 SADGKIKAWGKELGKSHCHSLKGILEGH---------KXXXXXXXXXXXXGKWVYGGGSD 235
A+ +IK W LG+ C E H + G D
Sbjct: 137 GAEREIKLWNI-LGE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 236 GFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIW 285
G + W N +I R+ KAHE V L + G+++ +G DK + IW
Sbjct: 194 GRLKVWNTNFQI-RYTF----KAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 273 LCSGSADKSIGIWKREAFGKLCRVG----AITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328
L SGS DK++ IWK + G A+TGH V L S S S D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC----FAISSSWD 97
Query: 329 KSLRVW 334
K+LR+W
Sbjct: 98 KTLRLW 103
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 126 EHADSISCLTVYNG----LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNG--LVASKG 179
EH++ ++C N L+ +GS D LK+W + +C ++ H ++VN
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK 762
Query: 180 IVYSASADGKIKAW 193
++ S SADG +K W
Sbjct: 763 LLASCSADGTLKLW 776
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 127 HADSI--SCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN--GLVASKGIVY 182
H D++ +C + I S DKTL+V++ + L IKAH+D V +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 183 SASADGKIKAWGKELGK 199
+ S D K+K W G+
Sbjct: 680 TCSVDKKVKIWNSMTGE 696
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 258 AHEMAVLCVCL--VGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
AH V C+ EF L +GSADK++ +W ++ + H+ + +Q SP+
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPH 332
Query: 315 AVGGGFLLYSGSLDKSLRVWWVSK---QSSTSDSEE 347
+L S D+ L VW +SK + ST D+E+
Sbjct: 333 ---NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 127 HADSISCLTV--YNGLIY-SGSWDKTLKVWRVADLKC-LESIKAHDDAVNGL---VASKG 179
H ++CL+ Y+ I +GS DKT+ +W + +LK L S ++H D + + ++
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 180 IVYSASADGKIKAW 193
I+ S+ D ++ W
Sbjct: 336 ILASSGTDRRLHVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 258 AHEMAVLCVCL--VGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
AH V C+ EF L +GSADK++ +W ++ + H+ + +Q SP+
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPH 334
Query: 315 AVGGGFLLYSGSLDKSLRVWWVSK---QSSTSDSEE 347
+L S D+ L VW +SK + ST D+E+
Sbjct: 335 ---NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 367
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 127 HADSISCLTV--YNGLIY-SGSWDKTLKVWRVADLKC-LESIKAHDDAVNGL---VASKG 179
H ++CL+ Y+ I +GS DKT+ +W + +LK L S ++H D + + ++
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 180 IVYSASADGKIKAW 193
I+ S+ D ++ W
Sbjct: 338 ILASSGTDRRLHVW 351
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 258 AHEMAVLCVCL--VGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
AH V C+ EF L +GSADK++ +W ++ + H+ + +Q SP+
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPH 336
Query: 315 AVGGGFLLYSGSLDKSLRVWWVSK---QSSTSDSEE 347
+L S D+ L VW +SK + ST D+E+
Sbjct: 337 ---NETILASSGTDRRLHVWDLSKIGEEQSTEDAED 369
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 127 HADSISCLTV--YNGLIY-SGSWDKTLKVWRVADLKC-LESIKAHDDAVNGL---VASKG 179
H ++CL+ Y+ I +GS DKT+ +W + +LK L S ++H D + + ++
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 180 IVYSASADGKIKAW 193
I+ S+ D ++ W
Sbjct: 340 ILASSGTDRRLHVW 353
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 19/198 (9%)
Query: 141 IYSGSWDKTLKVWRVAD--LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKE 196
+ +GS D +KVW+ D L S++ H V + S I S+S D I+ W E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 197 LGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACET 256
GK G ++ G V G + F VE + + + +T
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV--GKVNIF------GVESGKKEYSLDT 162
Query: 257 KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV 316
+ + + G++L SG+ D I I+ A GKL + GH P++ L SP++
Sbjct: 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLH--TLEGHAMPIRSLTFSPDSQ 219
Query: 317 GGGFLLYSGSLDKSLRVW 334
LL + S D ++++
Sbjct: 220 ----LLVTASDDGYIKIY 233
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 27/193 (13%)
Query: 133 CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKI 190
LT S SWDKTL++W VA + + H V + K ++ S S D I
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 191 KAW-------GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG 243
K W LG + S ++ K + G+D V W
Sbjct: 126 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------IISAGNDKMVKAWNL 177
Query: 244 NVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301
N ++++ + H + L G + S D I +W A + + A
Sbjct: 178 N----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--- 230
Query: 302 HEGPVKCLQASPN 314
+ V L SPN
Sbjct: 231 -QDEVFSLAFSPN 242
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 205 LKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAHEMAV 263
L+G LEGH + D ++ W+ + ++ + + K H V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 264 LCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321
L G + S S DK++ +W R GH+ V + A +
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVDIDKKAS----M 115
Query: 322 LYSGSLDKSLRVWWVSKQ 339
+ SGS DK+++VW + Q
Sbjct: 116 IISGSRDKTIKVWTIKGQ 133
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 27/193 (13%)
Query: 133 CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKI 190
LT S SWDKTL++W VA + + H V + K ++ S S D I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 191 KAW-------GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG 243
K W LG + S ++ K + G+D V W
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------IISAGNDKMVKAWNL 183
Query: 244 NVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301
N ++++ + H + L G + S D I +W A + + A
Sbjct: 184 N----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--- 236
Query: 302 HEGPVKCLQASPN 314
+ V L SPN
Sbjct: 237 -QDEVFSLAFSPN 248
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 205 LKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAHEMAV 263
L+G LEGH + D ++ W+ + ++ + + K H V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 264 LCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321
L G + S S DK++ +W R GH+ V + A +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVDIDKKAS----M 121
Query: 322 LYSGSLDKSLRVWWVSKQ 339
+ SGS DK+++VW + Q
Sbjct: 122 IISGSRDKTIKVWTIKGQ 139
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 27/193 (13%)
Query: 133 CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKI 190
LT S SWDKTL++W VA + + H V + K ++ S S D I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 191 KAW-------GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG 243
K W LG + S ++ K + G+D V W
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------IISAGNDKMVKAWNL 183
Query: 244 NVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301
N ++++ + H + L G + S D I +W A + + A
Sbjct: 184 N----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--- 236
Query: 302 HEGPVKCLQASPN 314
+ V L SPN
Sbjct: 237 -QDEVFSLAFSPN 248
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 205 LKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAHEMAV 263
L+G LEGH + D ++ W+ + ++ + + K H V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 264 LCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321
L G + S S DK++ +W R GH+ V + A +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVDIDKKAS----M 121
Query: 322 LYSGSLDKSLRVWWVSKQ 339
+ SGS DK+++VW + Q
Sbjct: 122 IISGSRDKTIKVWTIKGQ 139
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 27/193 (13%)
Query: 133 CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKI 190
LT S SWDKTL++W VA + + H V + K ++ S S D I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 191 KAW-------GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG 243
K W LG + S ++ K + G+D V W
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------IISAGNDKMVKAWNL 183
Query: 244 NVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301
N ++++ + H + L G + S D I +W A + + A
Sbjct: 184 N----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--- 236
Query: 302 HEGPVKCLQASPN 314
+ V L SPN
Sbjct: 237 -QDEVFSLAFSPN 248
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 205 LKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAHEMAV 263
L+G LEGH + D ++ W+ + ++ + + K H V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 264 LCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321
L G + S S DK++ +W R GH+ V + A +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVDIDKKAS----M 121
Query: 322 LYSGSLDKSLRVWWVSKQ 339
+ SGS DK+++VW + Q
Sbjct: 122 IISGSRDKTIKVWTIKGQ 139
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 67/193 (34%), Gaps = 27/193 (13%)
Query: 133 CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKI 190
LT S SWDKTL++W VA + + H V + K ++ S S D I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 191 KAW-------GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG 243
K W LG + S ++ K + G+D V W
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------IISAGNDKMVKAWNL 183
Query: 244 NVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301
N ++++ + H + L G + S D I +W A + + A
Sbjct: 184 N----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--- 236
Query: 302 HEGPVKCLQASPN 314
+ V L SPN
Sbjct: 237 -QDEVFSLAFSPN 248
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 205 LKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAHEMAV 263
L+G LEGH + D ++ W+ + ++ + + K H V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 264 LCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321
L G + S S DK++ +W R GH+ V + A +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVMSVDIDKKAS----M 121
Query: 322 LYSGSLDKSLRVWWVSKQ 339
+ SGS DK+++VW + Q
Sbjct: 122 IISGSRDKTIKVWTIKGQ 139
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 80/207 (38%), Gaps = 40/207 (19%)
Query: 26 GEFILSASQGKDIIVWQQPD--------LRMFTKFGHGDGSVKAVV--TVGNKVFTAHQD 75
+ I+SAS+ K II+W+ R T H V+ VV + G + D
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH---FVEDVVLSSDGQFALSGSWD 451
Query: 76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN---YVQTRRHHKRLWIE------ 126
+R+W ++ + + R V TKD L N +R +LW
Sbjct: 452 GELRLWDLA-AGVSTRRFVGH---TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY 507
Query: 127 --------HADSISCL----TVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174
H D +SC+ I S SWDKT+KVW +++ K ++ H V+ +
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 175 VASK--GIVYSASADGKIKAWGKELGK 199
S + S DG + W GK
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDLAEGK 594
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 257 KAHEMAVLCVCLV---GEFLCSGSADKSIGIWK----REAFGKLCRVGAITGHEGPVKCL 309
+AH V + + + S S DKSI +WK +A+G R +TGH V+ +
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR--RLTGHSHFVEDV 436
Query: 310 QASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342
S + G F L SGS D LR+W ++ ST
Sbjct: 437 VLSSD---GQFAL-SGSWDGELRLWDLAAGVST 465
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 126 EHADSISCLTVYNG--LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---I 180
EH D + L+V++ SG D ++KVW ++ L+S AH VN + A G I
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 181 VYSASADGKIKAW 193
S DG+I W
Sbjct: 197 FLSCGEDGRILLW 209
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 251 KLACETKAHEMAVLCVCL--VGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307
K + AH V C+ EF L +GSADK++ +W ++ + H+ +
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIF 321
Query: 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVSK---QSSTSDSEE 347
+Q SP+ +L S D+ L VW +SK + S D+E+
Sbjct: 322 QVQWSPH---NETILASSGTDRRLNVWDLSKIGEEQSPEDAED 361
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 127 HADSISCLTV--YNGLIY-SGSWDKTLKVWRVADLKC-LESIKAHDDAVNGL---VASKG 179
H ++CL+ Y+ I +GS DKT+ +W + +LK L S ++H D + + ++
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 331
Query: 180 IVYSASADGKIKAW 193
I+ S+ D ++ W
Sbjct: 332 ILASSGTDRRLNVW 345
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 130 SISCLTVYNGLIYSGSWDKTLKVW--RVADLKCLESIKAHDDAVNGL-VASKGIVY-SAS 185
S+S ++ + SGS D T+++W R+ + + + H+ +N + G + + S
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGHEGDINSVKFFPDGQRFGTGS 268
Query: 186 ADGKIKAWGKELG-KSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGN 244
DG + + G + ++ + ++ G+ ++ G S+G W+
Sbjct: 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328
Query: 245 VEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIW 285
+ + L +HE + C+ L G LC+GS DK++ IW
Sbjct: 329 LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 268 LVGEFLCSGSADKSIGIWKREAFGKLCRVGAI-TGHEGPVKCLQASPNAVGGGFLLYSGS 326
+ G L +G ++ +W + +G + HEG + CL S + G L +GS
Sbjct: 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD----GSALCTGS 363
Query: 327 LDKSLRVWWVS 337
DK+L++W S
Sbjct: 364 WDKNLKIWAFS 374
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 126 EHADSISCLTVYNG--LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK---GI 180
EH D +S ++V + SGS D +KVW +A L S +AH V + AS +
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184
Query: 181 VYSASADGKIKAWGKELGK 199
S S D +I W K
Sbjct: 185 FLSCSEDNRILLWDTRCPK 203
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 65/193 (33%), Gaps = 27/193 (13%)
Query: 133 CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKI 190
LT S SWDKTL++W VA + + H V + K + S S D I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 191 KAW-------GKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG 243
K W LG + S ++ K + G+D V W
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT--------IISAGNDKXVKAWNL 183
Query: 244 NVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301
N ++++ + H + L G + S D I +W A + A
Sbjct: 184 N----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--- 236
Query: 302 HEGPVKCLQASPN 314
+ V L SPN
Sbjct: 237 -QDEVFSLAFSPN 248
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 99/270 (36%), Gaps = 41/270 (15%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKF-GH-GDGSVKAVVTVGNKVFTAHQDSRIRVWKV 83
G + LSAS K + +W + +F GH D + + + + +D I+VW +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Query: 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYS 143
+ + TL D++ + N E AD S I S
Sbjct: 137 KG------QCLATLLGHNDWVSQVRVVPN-------------EKADDDSVT------IIS 171
Query: 144 GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSH 201
DK +K W + + H+ +N L AS ++ SA DG+I W K
Sbjct: 172 AGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA-AKKA 230
Query: 202 CHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETKA 258
++L E W+ + G F + + V+ +R + A +KA
Sbjct: 231 XYTLSAQDEVFSLAFSPNRY------WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 259 HEMAVLCVC--LVGEFLCSGSADKSIGIWK 286
E + + G+ L +G D I +W+
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 10/138 (7%)
Query: 205 LKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAHEMAV 263
L+G LEGH + D ++ W+ + ++ + + K H V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 264 LCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321
L G + S S DK++ +W R GH+ V + A
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQR---FVGHKSDVXSVDIDKKAS----X 121
Query: 322 LYSGSLDKSLRVWWVSKQ 339
+ SGS DK+++VW + Q
Sbjct: 122 IISGSRDKTIKVWTIKGQ 139
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 258 AHEMAVLCVCL--VGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
AH V C+ EF L +GSADK++ +W ++ H+ + + SP+
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPH 330
Query: 315 AVGGGFLLYSGSLDKSLRVWWVSK---QSSTSDSEE 347
+L S D+ L VW +SK + S D+E+
Sbjct: 331 ---NETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 127 HADSISCLTV--YNGLIY-SGSWDKTLKVWRVADLKC-LESIKAHDDAVNGL---VASKG 179
H ++CL+ Y+ I +GS DKT+ +W + +LK L + ++H D + + ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 180 IVYSASADGKIKAW 193
I+ S+ D ++ W
Sbjct: 334 ILASSGTDRRLNVW 347
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 258 AHEMAVLCVCL--VGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
AH V C+ EF L +GSADK++ +W ++ H+ + + SP+
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPH 330
Query: 315 AVGGGFLLYSGSLDKSLRVWWVSK---QSSTSDSEE 347
+L S D+ L VW +SK + S D+E+
Sbjct: 331 ---NETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 127 HADSISCLTV--YNGLIY-SGSWDKTLKVWRVADLKC-LESIKAHDDAVNGL---VASKG 179
H ++CL+ Y+ I +GS DKT+ +W + +LK L + ++H D + + ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 180 IVYSASADGKIKAW 193
I+ S+ D ++ W
Sbjct: 334 ILASSGTDRRLNVW 347
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 29/224 (12%)
Query: 147 DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHC 202
DK W ++D S +AHD ++ + + I+ SAS D +K W ++ + C
Sbjct: 41 DKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95
Query: 203 -----HSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG--NVEIVRWKLACE 255
+ L + + G + G+DG + ++ ++ W L E
Sbjct: 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 155
Query: 256 TKA-------HEMAVLCVC-----LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
K H + C+ E L + +++I I++R GKL + GH+
Sbjct: 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHK 214
Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347
++ + +P+ L+ +G D +R++ ++++ S SEE
Sbjct: 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/133 (18%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 226 GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV----CLVGEFLCSGSADKS 281
G+ V SD + ++ + + W+L+ +AH+ +++ + G + S S DK+
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 282 IGIWKREAFGKLC------RVGAITGHEGPVKCLQASPNAVG---------GGFLLYSGS 326
+ +W+ + + C ++ + +G + ++ +P +G G LY
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Query: 327 LDKSLRVWWVSKQ 339
LR W ++ +
Sbjct: 143 EPSDLRSWTLTSE 155
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 29/224 (12%)
Query: 147 DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHC 202
DK W ++D S +AHD ++ + + I+ SAS D +K W ++ + C
Sbjct: 39 DKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 93
Query: 203 -----HSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG--NVEIVRWKLACE 255
+ L + + G + G+DG + ++ ++ W L E
Sbjct: 94 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 153
Query: 256 TKA-------HEMAVLCVC-----LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
K H + C+ E L + +++I I++R GKL + GH+
Sbjct: 154 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHK 212
Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347
++ + +P+ L+ +G D +R++ ++++ S SEE
Sbjct: 213 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 256
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/133 (18%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 226 GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV----CLVGEFLCSGSADKS 281
G+ V SD + ++ + + W+L+ +AH+ +++ + G + S S DK+
Sbjct: 21 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 80
Query: 282 IGIWKREAFGKLC------RVGAITGHEGPVKCLQASPNAVG---------GGFLLYSGS 326
+ +W+ + + C ++ + +G + ++ +P +G G LY
Sbjct: 81 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140
Query: 327 LDKSLRVWWVSKQ 339
LR W ++ +
Sbjct: 141 EPSDLRSWTLTSE 153
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 29/224 (12%)
Query: 147 DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHC 202
DK W ++D S +AHD ++ + + I+ SAS D +K W ++ + C
Sbjct: 41 DKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95
Query: 203 -----HSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEG--NVEIVRWKLACE 255
+ L + + G + G+DG + ++ ++ W L E
Sbjct: 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 155
Query: 256 TKA-------HEMAVLCVC-----LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
K H + C+ E L + +++I I++R GKL + GH+
Sbjct: 156 XKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHK 214
Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347
++ + +P+ L+ +G D +R++ ++++ S SEE
Sbjct: 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/133 (18%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 226 GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV----CLVGEFLCSGSADKS 281
G+ V SD + ++ + + W+L+ +AH+ +++ + G + S S DK+
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 282 IGIWKREAFGKLC------RVGAITGHEGPVKCLQASPNAVG---------GGFLLYSGS 326
+ +W+ + + C ++ + +G + ++ +P +G G LY
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Query: 327 LDKSLRVWWVSKQ 339
LR W ++ +
Sbjct: 143 EPSDLRSWTLTSE 155
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
G L +G D + +W +A K R G + GH+ V CL + + G + +GS D
Sbjct: 282 GRLLLAGYDDFNCNVW--DAL-KADRAGVLAGHDNRVSCLGVTDD----GMAVATGSWDS 334
Query: 330 SLRVW 334
L++W
Sbjct: 335 FLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
G L +G D + +W +A K R G + GH+ V CL + + G + +GS D
Sbjct: 282 GRLLLAGYDDFNCNVW--DAL-KADRAGVLAGHDNRVSCLGVTDD----GMAVATGSWDS 334
Query: 330 SLRVW 334
L++W
Sbjct: 335 FLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
G L +G D + +W +A K R G + GH+ V CL + + G + +GS D
Sbjct: 282 GRLLLAGYDDFNCNVW--DAL-KADRAGVLAGHDNRVSCLGVTDD----GMAVATGSWDS 334
Query: 330 SLRVW 334
L++W
Sbjct: 335 FLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
G L +G D + +W +A K R G + GH+ V CL + + G + +GS D
Sbjct: 282 GRLLLAGYDDFNCNVW--DAL-KADRAGVLAGHDNRVSCLGVTDD----GMAVATGSWDS 334
Query: 330 SLRVW 334
L++W
Sbjct: 335 FLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
G L +G D + +W +A K R G + GH+ V CL + + G + +GS D
Sbjct: 293 GRLLLAGYDDFNCNVW--DAL-KADRAGVLAGHDNRVSCLGVTDD----GMAVATGSWDS 345
Query: 330 SLRVW 334
L++W
Sbjct: 346 FLKIW 350
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 29/126 (23%)
Query: 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127
K T D+ IRVW V+ S + V K LG
Sbjct: 266 KFATVGADATIRVWDVTTS-----KCVQKWTLDKQQLGN--------------------- 299
Query: 128 ADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASAD 187
+ + NG I S S D TL + + + L++I H+ + L + I S S D
Sbjct: 300 -QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI--SGSYD 356
Query: 188 GKIKAW 193
G+I W
Sbjct: 357 GRIXEW 362
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 46/126 (36%), Gaps = 29/126 (23%)
Query: 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127
K T D+ IRVW V+ S + V K LG
Sbjct: 266 KFATVGADATIRVWDVTTS-----KCVQKWTLDKQQLGN--------------------- 299
Query: 128 ADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASAD 187
+ + NG I S S D TL + + + L++I H+ + L + I S S D
Sbjct: 300 -QQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI--SGSYD 356
Query: 188 GKIKAW 193
G+I W
Sbjct: 357 GRIMEW 362
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV--ASKGIVYSASADGKIKAWGKELGK 199
+ S D T+K+W C+ +++ H V+ V + I+ S S DG +K W K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV--ASKGIVYSASADGKIKAWGKELGK 199
+ S D T+K+W C+ +++ H V+ V + I+ S S DG +K W K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK-----RLWIEHADSISCLT 135
+N R+ D LPT D +G F+ NY++ R+ K ++ + ADS+ T
Sbjct: 60 DNELRVSDFLPTATDQMGNFV---NYIEVRQPEKNPTNEKIRSKEADSMRPPT 109
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCR-VGAITGHEGPV-KCLQASPNAVGGGFLLYSGSL 327
G+ L + S+DK+I I++ E G+ + + +TGHEGPV + A P G +L S S
Sbjct: 21 GKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWAHPKF---GTILASCSY 75
Query: 328 DKSLRVW 334
D + +W
Sbjct: 76 DGKVLIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCR-VGAITGHEGPV-KCLQASPNAVGGGFLLYSGSL 327
G+ L + S+DK+I I++ E G+ + + +TGHEGPV + A P G +L S S
Sbjct: 23 GKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWAHPKF---GTILASCSY 77
Query: 328 DKSLRVW 334
D + +W
Sbjct: 78 DGKVLIW 84
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCR-VGAITGHEGPV-KCLQASPNAVGGGFLLYSGSL 327
G+ L + S+DK+I I++ E G+ + + +TGHEGPV + A P G +L S S
Sbjct: 21 GKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWAHPKF---GTILASCSY 75
Query: 328 DKSLRVW 334
D + +W
Sbjct: 76 DGKVLIW 82
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCR-VGAITGHEGPV-KCLQASPNAVGGGFLLYSGSL 327
G+ + + S+DK+I I++ E G+ + + +TGHEGPV + A P G +L S S
Sbjct: 21 GKRMATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWAHPKF---GTILASCSY 75
Query: 328 DKSLRVW 334
D + +W
Sbjct: 76 DGKVMIW 82
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV--ASKGIVYSASADGKIKAWGKELGK 199
+ S D T+K+W C+ +++ H V+ V + I+ S S DG +K W K
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV--ASKGIVYSASADGKIKAWG 194
+ S D T+K+W C+ +++ H V+ V + I+ S S DG +K W
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 41/136 (30%)
Query: 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHG--DGSVKAVV--TVGNKVFTAHQDSRIRVW 81
G F+++ S D+ W+ D G V V G+KVFTA D ++W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL----WIEHADSISCLTVY 137
+S + +Q +H + WI+ A + SC
Sbjct: 114 DLSSNQA-------------------------IQIAQHDAPVKTIHWIK-APNYSC---- 143
Query: 138 NGLIYSGSWDKTLKVW 153
+ +GSWDKTLK W
Sbjct: 144 ---VMTGSWDKTLKFW 156
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 141 IYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL-VASKG-IVYSASADGKIKAW 193
+ S S D LK+W V D ++ H V + + +G V SAS DG I+ W
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 141 IYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL-VASKG-IVYSASADGKIKAW 193
+ S S D LK+W V D ++ H V + + +G V SAS DG I+ W
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 56 DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKF---MKQSN 112
+ V + T GNK+ H + R + +S D + T +D L + +KQSN
Sbjct: 241 NARVSHMETTGNKIEAVHLEDGRRFLTQAVASN-----ADVVHTYRDLLSQHPAAVKQSN 295
Query: 113 YVQTRRHHKRLWI------EHADSISCLTVYNGLIYSGSWDKTLK 151
+QT+R L++ H D ++ TV G Y D+
Sbjct: 296 KLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFN 340
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
G + GH GP+ L+ + LL S S D +LR+W
Sbjct: 240 TGKLIGHHGPISVLEFNDT----NKLLLSASDDGTLRIW 274
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 270 GEFLCSGSADKSIGIWKREAFGKLCR-VGAITGHEGPV-KCLQASPNAVGGGFLLYSGSL 327
G+ + S+DK+I I++ E G+ + + +TGHEGPV + A P G +L S S
Sbjct: 21 GKRXATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDWAHPKF---GTILASCSY 75
Query: 328 DKSLRVW 334
D + +W
Sbjct: 76 DGKVXIW 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,528,133
Number of Sequences: 62578
Number of extensions: 410995
Number of successful extensions: 1426
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 297
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)