Query 018591
Match_columns 353
No_of_seqs 813 out of 1312
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 02:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.1E-55 1.3E-59 329.0 26.6 294 6-346 105-448 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.1E-53 4.5E-58 320.8 25.7 286 2-335 143-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-50 8.2E-55 306.6 22.9 274 13-335 172-458 (459)
4 KOG0286 G-protein beta subunit 100.0 7.2E-48 1.6E-52 280.9 31.5 287 7-335 46-343 (343)
5 KOG0281 Beta-TrCP (transducin 100.0 2.2E-47 4.9E-52 285.3 17.8 279 15-343 196-483 (499)
6 KOG0285 Pleiotropic regulator 100.0 2.6E-45 5.6E-50 274.9 26.9 288 5-339 140-441 (460)
7 KOG0279 G protein beta subunit 100.0 5.5E-44 1.2E-48 259.0 31.6 285 6-338 5-314 (315)
8 KOG0315 G-protein beta subunit 100.0 5.3E-44 1.2E-48 255.1 29.2 279 26-347 10-298 (311)
9 KOG0295 WD40 repeat-containing 100.0 7.5E-43 1.6E-47 262.0 24.9 283 6-336 98-405 (406)
10 KOG0319 WD40-repeat-containing 100.0 8.3E-43 1.8E-47 284.1 26.7 334 2-347 90-587 (775)
11 KOG0273 Beta-transducin family 100.0 1.1E-42 2.4E-47 269.5 26.0 288 10-348 173-493 (524)
12 KOG0265 U5 snRNP-specific prot 100.0 2E-42 4.3E-47 253.5 25.3 283 7-335 38-336 (338)
13 KOG0645 WD40 repeat protein [G 100.0 3.2E-41 6.9E-46 243.7 31.1 288 6-337 4-311 (312)
14 KOG0316 Conserved WD40 repeat- 100.0 1.5E-41 3.2E-46 240.8 26.5 277 8-336 9-298 (307)
15 KOG0272 U4/U6 small nuclear ri 100.0 3.9E-43 8.4E-48 268.4 19.0 242 3-286 204-458 (459)
16 KOG0281 Beta-TrCP (transducin 100.0 3.8E-43 8.2E-48 262.7 14.8 251 4-291 225-480 (499)
17 KOG0282 mRNA splicing factor [ 100.0 1.5E-42 3.3E-47 269.5 17.4 284 7-335 205-503 (503)
18 KOG0284 Polyadenylation factor 100.0 3.8E-42 8.2E-47 261.9 18.6 276 16-339 96-382 (464)
19 KOG0318 WD40 repeat stress pro 100.0 2.7E-39 5.9E-44 254.1 34.1 325 5-342 179-565 (603)
20 KOG0319 WD40-repeat-containing 100.0 1.1E-40 2.3E-45 271.8 25.6 290 4-339 311-621 (775)
21 KOG0296 Angio-associated migra 100.0 1.3E-39 2.7E-44 244.8 27.7 287 7-337 55-398 (399)
22 KOG0263 Transcription initiati 100.0 1.8E-40 4E-45 272.7 24.3 274 51-342 373-654 (707)
23 KOG0273 Beta-transducin family 100.0 1.6E-39 3.4E-44 252.0 28.0 270 17-337 236-523 (524)
24 KOG0291 WD40-repeat-containing 100.0 1.6E-38 3.5E-43 260.0 34.9 325 6-346 135-559 (893)
25 KOG0266 WD40 repeat-containing 100.0 4E-39 8.6E-44 270.5 31.6 285 8-337 150-454 (456)
26 cd00200 WD40 WD40 domain, foun 100.0 3E-38 6.6E-43 254.2 34.9 278 9-335 2-289 (289)
27 KOG0279 G protein beta subunit 100.0 8.2E-39 1.8E-43 232.2 27.4 256 46-347 5-272 (315)
28 KOG0313 Microtubule binding pr 100.0 3.1E-39 6.6E-44 244.0 24.4 279 15-337 104-418 (423)
29 KOG0315 G-protein beta subunit 100.0 5.2E-38 1.1E-42 224.6 28.0 269 3-312 27-309 (311)
30 KOG0274 Cdc4 and related F-box 100.0 1.4E-38 3E-43 266.2 28.3 284 11-345 202-490 (537)
31 KOG0293 WD40 repeat-containing 100.0 6.7E-39 1.4E-43 244.8 22.8 283 8-339 216-515 (519)
32 KOG0278 Serine/threonine kinas 100.0 1.6E-39 3.4E-44 232.6 18.2 281 10-342 8-302 (334)
33 KOG0263 Transcription initiati 100.0 3.7E-38 8E-43 259.2 26.4 264 9-314 371-696 (707)
34 KOG0286 G-protein beta subunit 100.0 3.3E-37 7.2E-42 225.4 27.2 252 48-346 47-312 (343)
35 KOG0306 WD40-repeat-containing 100.0 1.5E-36 3.2E-41 248.4 29.6 330 4-346 95-631 (888)
36 KOG0276 Vesicle coat complex C 100.0 4.8E-37 1E-41 246.5 25.9 283 9-341 6-302 (794)
37 PLN00181 protein SPA1-RELATED; 100.0 5.7E-36 1.2E-40 269.6 35.8 281 12-336 479-792 (793)
38 KOG0291 WD40-repeat-containing 100.0 5.4E-36 1.2E-40 245.3 31.6 300 3-346 294-621 (893)
39 KOG0285 Pleiotropic regulator 100.0 3E-37 6.6E-42 231.8 21.9 248 47-345 142-397 (460)
40 KOG0295 WD40 repeat-containing 100.0 1.8E-37 3.8E-42 233.2 20.0 274 27-349 77-376 (406)
41 KOG0277 Peroxisomal targeting 100.0 1.3E-36 2.8E-41 218.0 21.5 272 20-336 12-308 (311)
42 KOG0274 Cdc4 and related F-box 100.0 4.2E-36 9.1E-41 251.4 27.7 245 4-292 236-486 (537)
43 KOG0318 WD40 repeat stress pro 100.0 1.2E-34 2.6E-39 228.1 32.0 293 3-343 46-356 (603)
44 KOG0316 Conserved WD40 repeat- 100.0 1E-35 2.2E-40 211.2 23.1 251 48-347 9-267 (307)
45 KOG0284 Polyadenylation factor 100.0 1.9E-37 4E-42 236.5 14.4 238 11-289 133-381 (464)
46 KOG0268 Sof1-like rRNA process 100.0 7.4E-37 1.6E-41 229.9 16.7 282 8-341 58-349 (433)
47 KOG0643 Translation initiation 100.0 7E-35 1.5E-39 210.7 26.2 281 11-338 5-318 (327)
48 KOG1446 Histone H3 (Lys4) meth 100.0 7.3E-34 1.6E-38 210.4 32.0 293 4-340 2-306 (311)
49 KOG0292 Vesicle coat complex C 100.0 2.1E-35 4.6E-40 246.0 24.6 288 11-341 4-325 (1202)
50 KOG0300 WD40 repeat-containing 100.0 2E-35 4.4E-40 219.1 20.8 322 6-340 138-479 (481)
51 KOG1407 WD40 repeat protein [F 100.0 2.5E-34 5.3E-39 207.2 24.7 276 10-337 14-311 (313)
52 KOG0276 Vesicle coat complex C 100.0 2.1E-35 4.5E-40 237.1 20.9 247 50-344 7-264 (794)
53 KOG0294 WD40 repeat-containing 100.0 7.2E-34 1.5E-38 210.1 26.1 262 28-339 3-283 (362)
54 KOG0288 WD40 repeat protein Ti 100.0 5.5E-36 1.2E-40 228.8 14.8 283 8-335 167-459 (459)
55 KOG0645 WD40 repeat protein [G 100.0 1.1E-32 2.4E-37 199.7 29.1 247 47-338 5-262 (312)
56 KOG0283 WD40 repeat-containing 100.0 3.3E-34 7.2E-39 237.8 23.8 276 50-340 260-579 (712)
57 KOG0306 WD40-repeat-containing 100.0 2.4E-33 5.1E-38 229.8 27.9 278 10-339 367-666 (888)
58 KOG0313 Microtubule binding pr 100.0 7.1E-34 1.5E-38 215.1 22.9 271 4-288 132-418 (423)
59 KOG0275 Conserved WD40 repeat- 100.0 5.4E-35 1.2E-39 217.5 15.9 279 14-335 211-507 (508)
60 KOG0265 U5 snRNP-specific prot 100.0 7.9E-34 1.7E-38 208.5 21.1 251 48-344 39-303 (338)
61 KOG0292 Vesicle coat complex C 100.0 5.2E-34 1.1E-38 237.8 21.7 254 50-346 3-289 (1202)
62 KOG1036 Mitotic spindle checkp 100.0 1.2E-32 2.5E-37 203.2 25.6 267 15-327 12-294 (323)
63 KOG0282 mRNA splicing factor [ 100.0 1.2E-34 2.5E-39 225.9 15.3 258 46-346 204-471 (503)
64 PLN00181 protein SPA1-RELATED; 100.0 1.7E-32 3.6E-37 247.3 31.7 267 35-340 457-741 (793)
65 KOG0266 WD40 repeat-containing 100.0 8.7E-33 1.9E-37 232.3 27.5 240 8-288 195-454 (456)
66 KOG0301 Phospholipase A2-activ 100.0 1.1E-32 2.3E-37 224.0 26.3 281 4-342 2-293 (745)
67 KOG0277 Peroxisomal targeting 100.0 1.5E-33 3.2E-38 202.4 17.9 232 16-287 60-308 (311)
68 KOG0647 mRNA export protein (c 100.0 2.4E-32 5.3E-37 200.9 23.7 265 14-325 25-311 (347)
69 KOG0772 Uncharacterized conser 100.0 5.6E-33 1.2E-37 218.4 21.6 298 9-335 160-485 (641)
70 KOG0305 Anaphase promoting com 100.0 7.8E-32 1.7E-36 217.8 26.8 267 26-343 188-467 (484)
71 KOG0310 Conserved WD40 repeat- 100.0 5.7E-32 1.2E-36 211.2 24.9 273 16-340 26-312 (487)
72 KOG0283 WD40 repeat-containing 100.0 2.3E-32 4.9E-37 227.0 22.9 246 10-289 260-577 (712)
73 PTZ00421 coronin; Provisional 100.0 1E-30 2.3E-35 218.8 32.9 257 23-314 29-314 (493)
74 KOG0640 mRNA cleavage stimulat 100.0 1E-31 2.2E-36 198.7 22.0 284 9-337 105-426 (430)
75 cd00200 WD40 WD40 domain, foun 100.0 7.3E-31 1.6E-35 211.2 29.1 248 50-346 3-258 (289)
76 KOG0296 Angio-associated migra 100.0 4E-31 8.7E-36 199.3 23.6 241 4-288 94-398 (399)
77 KOG0973 Histone transcription 100.0 4.4E-31 9.6E-36 225.1 26.0 297 15-340 12-358 (942)
78 KOG0278 Serine/threonine kinas 100.0 1.4E-32 3E-37 197.1 14.2 245 4-291 47-300 (334)
79 PTZ00420 coronin; Provisional 100.0 8.3E-30 1.8E-34 214.4 32.7 260 22-314 34-317 (568)
80 KOG0299 U3 snoRNP-associated p 100.0 1.1E-30 2.5E-35 202.5 25.2 284 9-337 135-456 (479)
81 KOG0308 Conserved WD40 repeat- 100.0 3.9E-32 8.4E-37 219.3 17.5 282 14-342 19-332 (735)
82 KOG0289 mRNA splicing factor [ 100.0 2.4E-30 5.3E-35 199.4 26.3 273 17-336 220-505 (506)
83 KOG0294 WD40 repeat-containing 100.0 1.7E-30 3.7E-35 192.4 22.4 261 5-312 32-306 (362)
84 KOG1539 WD repeat protein [Gen 100.0 4.2E-30 9.1E-35 213.1 27.1 336 3-344 189-613 (910)
85 KOG0264 Nucleosome remodeling 100.0 6.8E-31 1.5E-35 203.5 20.3 259 14-338 122-405 (422)
86 KOG1407 WD40 repeat protein [F 100.0 1.6E-30 3.4E-35 187.6 20.7 250 50-347 14-271 (313)
87 KOG1332 Vesicle coat complex C 100.0 6.6E-31 1.4E-35 187.8 18.3 251 11-296 6-294 (299)
88 KOG0641 WD40 repeat protein [G 100.0 1.4E-28 3E-33 174.4 29.6 290 7-337 24-349 (350)
89 KOG4283 Transcription-coupled 100.0 6E-30 1.3E-34 188.0 23.5 286 11-337 38-365 (397)
90 PTZ00420 coronin; Provisional 100.0 2.3E-29 5E-34 211.7 29.7 202 124-340 70-296 (568)
91 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-28 3.4E-33 182.3 29.0 255 46-347 4-272 (311)
92 KOG1332 Vesicle coat complex C 100.0 1.8E-30 3.9E-35 185.6 17.8 249 53-339 8-288 (299)
93 PTZ00421 coronin; Provisional 100.0 2.5E-29 5.3E-34 210.6 27.6 249 61-344 27-297 (493)
94 KOG2096 WD40 repeat protein [G 100.0 1.8E-29 3.9E-34 187.4 23.4 295 9-335 79-400 (420)
95 KOG0305 Anaphase promoting com 100.0 1.8E-29 3.8E-34 204.3 24.5 244 5-290 206-463 (484)
96 KOG0299 U3 snoRNP-associated p 100.0 1.2E-29 2.7E-34 196.8 22.1 262 49-339 135-412 (479)
97 KOG0647 mRNA export protein (c 100.0 3.2E-29 6.8E-34 184.6 22.2 256 53-353 24-298 (347)
98 KOG1408 WD40 repeat protein [F 100.0 3.1E-29 6.7E-34 205.1 24.2 288 10-338 363-714 (1080)
99 KOG0289 mRNA splicing factor [ 100.0 3.1E-29 6.8E-34 193.3 22.8 248 3-287 248-505 (506)
100 KOG0300 WD40 repeat-containing 100.0 1.1E-29 2.5E-34 188.7 19.3 251 2-290 176-478 (481)
101 KOG0650 WD40 repeat nucleolar 100.0 1.1E-28 2.4E-33 197.8 24.8 311 7-334 391-732 (733)
102 KOG0288 WD40 repeat protein Ti 100.0 6.4E-30 1.4E-34 195.8 16.9 238 6-286 209-459 (459)
103 KOG0772 Uncharacterized conser 100.0 2E-29 4.3E-34 198.6 19.9 265 48-346 159-454 (641)
104 KOG0293 WD40 repeat-containing 100.0 6E-29 1.3E-33 190.7 21.1 255 47-347 215-480 (519)
105 KOG0301 Phospholipase A2-activ 100.0 7.3E-29 1.6E-33 201.9 21.2 245 46-345 4-255 (745)
106 KOG0310 Conserved WD40 repeat- 100.0 1.1E-28 2.5E-33 192.9 20.1 239 9-291 61-312 (487)
107 KOG0308 Conserved WD40 repeat- 100.0 2.7E-29 6E-34 202.9 17.1 304 8-346 65-402 (735)
108 KOG2445 Nuclear pore complex c 100.0 2.3E-27 5E-32 175.3 24.7 262 13-300 10-330 (361)
109 KOG0646 WD40 repeat protein [G 100.0 6.1E-28 1.3E-32 187.8 22.3 276 31-346 12-316 (476)
110 KOG0275 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 183.6 17.8 250 56-345 213-475 (508)
111 KOG2445 Nuclear pore complex c 100.0 4.8E-27 1E-31 173.7 25.7 251 53-337 10-318 (361)
112 KOG2106 Uncharacterized conser 100.0 6.7E-26 1.5E-30 178.4 31.6 307 10-336 239-625 (626)
113 KOG1274 WD40 repeat protein [G 100.0 7E-27 1.5E-31 196.2 27.3 278 14-334 11-297 (933)
114 KOG0646 WD40 repeat protein [G 100.0 1.4E-27 3E-32 185.9 20.8 248 25-314 49-330 (476)
115 KOG0321 WD40 repeat-containing 100.0 2.2E-27 4.7E-32 191.7 22.5 280 26-342 64-396 (720)
116 KOG1063 RNA polymerase II elon 100.0 5E-27 1.1E-31 191.3 24.2 326 5-339 180-650 (764)
117 KOG0643 Translation initiation 100.0 2.8E-27 6.2E-32 171.5 20.0 217 124-353 6-236 (327)
118 KOG1036 Mitotic spindle checkp 100.0 7E-27 1.5E-31 172.8 22.3 243 56-347 13-272 (323)
119 KOG2106 Uncharacterized conser 100.0 1.1E-25 2.3E-30 177.3 29.9 293 5-341 143-481 (626)
120 KOG0269 WD40 repeat-containing 100.0 1.3E-28 2.7E-33 202.9 14.1 233 19-291 90-343 (839)
121 KOG0269 WD40 repeat-containing 100.0 5.6E-28 1.2E-32 199.1 17.4 280 18-340 41-343 (839)
122 KOG0639 Transducin-like enhanc 100.0 3E-27 6.6E-32 186.0 20.4 276 9-336 413-703 (705)
123 KOG1539 WD repeat protein [Gen 100.0 6.9E-26 1.5E-30 188.4 29.2 314 3-335 231-646 (910)
124 KOG0268 Sof1-like rRNA process 100.0 9.2E-28 2E-32 181.2 15.3 242 5-291 98-348 (433)
125 KOG0322 G-protein beta subunit 100.0 2.8E-27 6E-32 171.3 16.5 287 7-336 5-322 (323)
126 KOG0264 Nucleosome remodeling 100.0 2.7E-27 5.8E-32 183.7 17.5 213 124-344 120-354 (422)
127 KOG1408 WD40 repeat protein [F 100.0 2.5E-26 5.4E-31 188.3 23.7 316 20-346 328-680 (1080)
128 KOG2055 WD40 repeat protein [G 100.0 4.4E-26 9.5E-31 177.4 23.4 283 16-337 213-512 (514)
129 KOG4283 Transcription-coupled 100.0 1E-26 2.2E-31 171.1 18.5 230 52-343 39-282 (397)
130 KOG1273 WD40 repeat protein [G 100.0 1.3E-25 2.9E-30 166.8 22.7 276 19-340 26-325 (405)
131 KOG2048 WD40 repeat protein [G 100.0 2.7E-24 5.8E-29 175.1 31.4 280 16-338 25-320 (691)
132 KOG0267 Microtubule severing p 99.9 1.4E-27 3E-32 195.4 11.2 246 29-329 7-260 (825)
133 KOG4328 WD40 protein [Function 99.9 3.4E-25 7.4E-30 172.3 23.3 296 4-338 174-496 (498)
134 KOG2048 WD40 repeat protein [G 99.9 3.9E-24 8.4E-29 174.1 30.1 295 4-339 56-413 (691)
135 KOG0270 WD40 repeat-containing 99.9 4.9E-26 1.1E-30 176.3 18.1 254 66-344 192-456 (463)
136 KOG0641 WD40 repeat protein [G 99.9 4.6E-24 1E-28 151.6 26.3 240 12-288 85-349 (350)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.8E-24 1.3E-28 172.4 31.0 271 26-346 1-288 (300)
138 KOG0640 mRNA cleavage stimulat 99.9 6.8E-26 1.5E-30 168.1 17.6 214 121-346 105-344 (430)
139 KOG0270 WD40 repeat-containing 99.9 8.7E-26 1.9E-30 174.9 18.7 227 26-291 192-452 (463)
140 KOG1063 RNA polymerase II elon 99.9 5.6E-24 1.2E-28 173.7 29.0 326 7-338 45-438 (764)
141 KOG1034 Transcriptional repres 99.9 6.4E-25 1.4E-29 163.9 20.6 285 12-337 34-383 (385)
142 KOG1188 WD40 repeat protein [G 99.9 6E-25 1.3E-29 164.9 20.2 276 27-339 41-348 (376)
143 KOG1274 WD40 repeat protein [G 99.9 1.9E-24 4.1E-29 181.8 24.8 244 53-338 10-263 (933)
144 KOG0639 Transducin-like enhanc 99.9 2.6E-25 5.7E-30 175.2 16.6 253 54-353 417-680 (705)
145 KOG0302 Ribosome Assembly prot 99.9 1.3E-24 2.9E-29 165.1 19.4 203 11-246 146-380 (440)
146 KOG0973 Histone transcription 99.9 1.5E-24 3.3E-29 185.6 21.9 263 53-344 10-319 (942)
147 KOG0267 Microtubule severing p 99.9 1.1E-26 2.4E-31 190.2 8.6 204 126-346 26-235 (825)
148 KOG0302 Ribosome Assembly prot 99.9 1.2E-24 2.7E-29 165.3 16.5 208 126-341 149-382 (440)
149 KOG1445 Tumor-specific antigen 99.9 3.8E-24 8.2E-29 173.6 19.2 120 217-343 630-756 (1012)
150 KOG0321 WD40 repeat-containing 99.9 6E-24 1.3E-28 172.0 19.8 271 9-290 93-393 (720)
151 KOG4378 Nuclear protein COP1 [ 99.9 9.3E-24 2E-28 166.3 19.9 263 34-342 10-285 (673)
152 KOG4227 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 160.2 20.8 292 10-336 50-386 (609)
153 KOG4378 Nuclear protein COP1 [ 99.9 3.9E-23 8.5E-28 162.8 18.8 253 18-314 36-304 (673)
154 KOG2096 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 150.4 20.7 269 38-346 63-369 (420)
155 KOG1009 Chromatin assembly com 99.9 8E-22 1.7E-26 151.5 24.4 302 16-342 13-377 (434)
156 KOG0307 Vesicle coat complex C 99.9 1.1E-23 2.3E-28 181.4 13.6 237 16-291 64-330 (1049)
157 KOG0649 WD40 repeat protein [G 99.9 3.5E-21 7.6E-26 138.4 23.8 281 19-335 13-314 (325)
158 KOG0307 Vesicle coat complex C 99.9 2.2E-23 4.7E-28 179.6 15.0 267 33-341 36-331 (1049)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-20 3.3E-25 152.3 30.9 263 3-313 18-300 (300)
160 KOG1517 Guanine nucleotide bin 99.9 1.8E-21 3.8E-26 166.6 24.9 294 18-341 1066-1385(1387)
161 KOG4328 WD40 protein [Function 99.9 1.1E-21 2.4E-26 153.0 20.5 266 41-344 171-457 (498)
162 KOG0644 Uncharacterized conser 99.9 1.4E-23 3E-28 175.1 10.5 282 7-346 181-477 (1113)
163 KOG1334 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 159.6 15.0 298 6-339 132-468 (559)
164 KOG1538 Uncharacterized conser 99.9 1.1E-21 2.3E-26 160.5 20.7 266 18-338 14-294 (1081)
165 KOG0303 Actin-binding protein 99.9 3.9E-21 8.4E-26 147.4 22.2 231 51-314 76-320 (472)
166 KOG0642 Cell-cycle nuclear pro 99.9 1.7E-22 3.7E-27 161.4 15.5 265 4-303 282-573 (577)
167 KOG1034 Transcriptional repres 99.9 1.5E-22 3.2E-27 151.5 13.8 245 15-288 88-383 (385)
168 KOG1240 Protein kinase contain 99.9 7.7E-21 1.7E-25 165.0 25.2 299 4-335 1036-1431(1431)
169 KOG1587 Cytoplasmic dynein int 99.9 1E-20 2.2E-25 158.2 23.9 268 35-339 221-518 (555)
170 KOG0642 Cell-cycle nuclear pro 99.9 9.5E-22 2.1E-26 157.2 15.1 260 51-346 289-570 (577)
171 KOG1273 WD40 repeat protein [G 99.9 1.3E-20 2.8E-25 140.5 20.0 245 59-346 26-289 (405)
172 KOG0290 Conserved WD40 repeat- 99.9 4.5E-20 9.7E-25 136.1 22.1 290 6-333 35-361 (364)
173 KOG1007 WD repeat protein TSSC 99.9 9.8E-21 2.1E-25 139.4 18.6 276 10-338 57-362 (370)
174 KOG0650 WD40 repeat nucleolar 99.9 1.3E-20 2.9E-25 151.9 20.6 237 48-335 392-678 (733)
175 KOG0303 Actin-binding protein 99.9 1.1E-20 2.3E-25 145.0 18.7 201 10-247 75-297 (472)
176 KOG2919 Guanine nucleotide-bin 99.9 8.7E-20 1.9E-24 136.6 22.5 262 21-328 54-361 (406)
177 COG2319 FOG: WD40 repeat [Gene 99.9 6.1E-18 1.3E-22 144.4 35.9 283 11-340 60-362 (466)
178 KOG0290 Conserved WD40 repeat- 99.9 2E-19 4.3E-24 132.7 20.5 254 46-340 35-321 (364)
179 KOG0649 WD40 repeat protein [G 99.9 1.4E-18 3E-23 125.2 23.2 233 6-286 52-314 (325)
180 KOG2055 WD40 repeat protein [G 99.9 2.1E-19 4.6E-24 140.6 19.8 245 56-342 213-472 (514)
181 KOG2110 Uncharacterized conser 99.8 5.5E-17 1.2E-21 123.8 30.3 231 16-289 5-249 (391)
182 KOG0644 Uncharacterized conser 99.8 7.7E-21 1.7E-25 159.0 10.4 251 47-346 181-435 (1113)
183 KOG2919 Guanine nucleotide-bin 99.8 2.7E-18 5.8E-23 128.7 22.0 254 58-339 51-329 (406)
184 KOG1587 Cytoplasmic dynein int 99.8 1.3E-18 2.7E-23 145.8 22.0 255 7-289 234-517 (555)
185 KOG1445 Tumor-specific antigen 99.8 1.6E-19 3.4E-24 147.1 15.5 231 72-340 599-847 (1012)
186 PRK11028 6-phosphogluconolacto 99.8 5.2E-17 1.1E-21 132.8 29.6 272 29-338 5-305 (330)
187 COG2319 FOG: WD40 repeat [Gene 99.8 5.2E-16 1.1E-20 132.5 36.3 283 6-338 145-443 (466)
188 KOG1188 WD40 repeat protein [G 99.8 7.9E-19 1.7E-23 132.4 16.3 200 139-346 41-251 (376)
189 KOG1963 WD40 repeat protein [G 99.8 7.7E-17 1.7E-21 136.1 28.0 289 14-340 203-541 (792)
190 KOG1523 Actin-related protein 99.8 4E-17 8.6E-22 122.3 23.3 207 10-246 4-238 (361)
191 KOG1963 WD40 repeat protein [G 99.8 2.4E-16 5.3E-21 133.1 30.3 236 2-245 43-323 (792)
192 KOG1007 WD repeat protein TSSC 99.8 3.6E-18 7.8E-23 126.1 17.1 207 123-340 58-292 (370)
193 KOG1524 WD40 repeat-containing 99.8 6.1E-18 1.3E-22 135.2 19.3 255 14-334 12-283 (737)
194 KOG1538 Uncharacterized conser 99.8 3.3E-18 7.1E-23 140.4 18.2 237 2-288 39-293 (1081)
195 KOG0771 Prolactin regulatory e 99.8 1.3E-17 2.9E-22 129.3 20.5 200 132-343 148-360 (398)
196 KOG1310 WD40 repeat protein [G 99.8 7.2E-19 1.6E-23 140.8 12.9 219 7-247 41-306 (758)
197 KOG3881 Uncharacterized conser 99.8 3E-17 6.6E-22 126.1 19.0 260 15-349 54-332 (412)
198 KOG0322 G-protein beta subunit 99.8 2E-17 4.4E-22 120.6 15.9 258 4-287 43-322 (323)
199 KOG2110 Uncharacterized conser 99.8 1.2E-15 2.7E-20 116.6 25.8 235 57-340 6-251 (391)
200 KOG4227 WD40 repeat protein [G 99.8 3.9E-17 8.5E-22 125.9 17.7 253 50-339 50-324 (609)
201 KOG1310 WD40 repeat protein [G 99.8 8.9E-18 1.9E-22 134.7 14.5 245 47-344 41-310 (758)
202 KOG1517 Guanine nucleotide bin 99.8 1.3E-16 2.8E-21 137.5 22.4 235 66-341 1076-1337(1387)
203 KOG1334 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 131.0 13.4 269 48-353 134-441 (559)
204 KOG1240 Protein kinase contain 99.7 9.8E-16 2.1E-20 134.0 23.6 265 41-342 1034-1339(1431)
205 KOG1009 Chromatin assembly com 99.7 9E-16 1.9E-20 118.7 20.8 252 56-343 13-335 (434)
206 KOG1272 WD40-repeat-containing 99.7 1.9E-17 4.2E-22 130.0 11.9 266 18-333 131-405 (545)
207 KOG2394 WD40 protein DMR-N9 [G 99.7 7.8E-16 1.7E-20 123.3 19.2 197 139-343 186-458 (636)
208 KOG1523 Actin-related protein 99.7 1.2E-15 2.6E-20 114.6 18.5 207 127-340 9-239 (361)
209 KOG1409 Uncharacterized conser 99.7 2.2E-15 4.8E-20 114.2 18.1 248 6-289 14-271 (404)
210 KOG1524 WD40 repeat-containing 99.7 2.2E-16 4.8E-21 126.4 12.5 184 4-240 92-282 (737)
211 PRK01742 tolB translocation pr 99.7 5E-15 1.1E-19 124.9 21.1 229 35-314 183-426 (429)
212 KOG2111 Uncharacterized conser 99.7 5.6E-14 1.2E-18 105.6 23.6 181 148-342 75-261 (346)
213 KOG1272 WD40-repeat-containing 99.7 1.2E-16 2.7E-21 125.5 9.2 195 133-347 134-333 (545)
214 TIGR03300 assembly_YfgL outer 99.7 2E-13 4.3E-18 113.9 28.0 281 5-334 84-376 (377)
215 KOG1354 Serine/threonine prote 99.7 2.8E-14 6.2E-19 108.4 19.1 272 16-290 25-361 (433)
216 KOG0974 WD-repeat protein WDR6 99.7 1.3E-14 2.9E-19 125.0 19.5 271 15-341 6-292 (967)
217 KOG0771 Prolactin regulatory e 99.7 4.8E-15 1E-19 115.3 15.1 190 20-245 148-355 (398)
218 TIGR03300 assembly_YfgL outer 99.7 4.8E-13 1E-17 111.6 28.4 279 21-346 60-347 (377)
219 KOG2111 Uncharacterized conser 99.7 1E-12 2.2E-17 99.0 26.5 232 18-290 7-258 (346)
220 KOG2394 WD40 protein DMR-N9 [G 99.6 2E-14 4.4E-19 115.4 17.0 133 127-269 218-383 (636)
221 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-12 2.7E-17 106.9 26.6 276 26-346 5-356 (369)
222 KOG2139 WD40 repeat protein [G 99.6 1E-12 2.2E-17 100.7 23.7 290 18-337 100-431 (445)
223 KOG3881 Uncharacterized conser 99.6 6.4E-14 1.4E-18 108.1 17.3 207 11-247 100-323 (412)
224 KOG2321 WD40 repeat protein [G 99.6 6.1E-13 1.3E-17 108.0 22.6 275 14-340 49-346 (703)
225 PRK11028 6-phosphogluconolacto 99.6 2.9E-12 6.3E-17 105.0 26.9 233 70-340 6-261 (330)
226 PRK01742 tolB translocation pr 99.6 3.5E-13 7.7E-18 113.8 18.4 195 126-344 201-410 (429)
227 PRK03629 tolB translocation pr 99.5 8E-12 1.7E-16 105.4 24.9 228 37-314 180-428 (429)
228 KOG1409 Uncharacterized conser 99.5 1.2E-12 2.6E-17 99.7 16.4 247 47-340 15-273 (404)
229 KOG0974 WD-repeat protein WDR6 99.5 6.7E-13 1.5E-17 114.8 16.9 182 26-245 99-289 (967)
230 KOG4547 WD40 repeat-containing 99.5 4.6E-12 1E-16 103.2 19.9 139 139-289 71-221 (541)
231 PRK04922 tolB translocation pr 99.5 1.2E-11 2.6E-16 104.8 23.3 228 36-313 184-432 (433)
232 KOG1354 Serine/threonine prote 99.5 4.9E-12 1.1E-16 96.5 18.1 262 56-340 25-362 (433)
233 PF08662 eIF2A: Eukaryotic tra 99.5 2.1E-12 4.5E-17 96.1 16.1 126 206-346 51-187 (194)
234 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.7E-10 1E-14 89.9 30.2 275 36-345 27-338 (352)
235 KOG4190 Uncharacterized conser 99.5 2.3E-13 4.9E-18 110.4 10.6 283 9-333 728-1032(1034)
236 PRK04922 tolB translocation pr 99.5 3.4E-11 7.4E-16 102.0 24.2 194 126-339 201-413 (433)
237 PRK02889 tolB translocation pr 99.5 2.2E-11 4.9E-16 102.8 22.6 229 36-314 176-425 (427)
238 KOG0280 Uncharacterized conser 99.5 3.6E-11 7.8E-16 89.9 20.6 267 35-340 45-336 (339)
239 PRK05137 tolB translocation pr 99.5 6.2E-11 1.3E-15 100.6 25.0 228 36-314 182-433 (435)
240 PF10282 Lactonase: Lactonase, 99.5 4E-09 8.7E-14 86.6 34.6 274 29-337 2-322 (345)
241 KOG2321 WD40 repeat protein [G 99.5 3.7E-11 8E-16 97.9 20.9 167 172-349 137-314 (703)
242 PF02239 Cytochrom_D1: Cytochr 99.5 5.4E-10 1.2E-14 91.6 28.0 280 2-293 22-352 (369)
243 KOG4497 Uncharacterized conser 99.5 3.8E-11 8.3E-16 91.2 19.1 276 21-346 15-400 (447)
244 KOG2139 WD40 repeat protein [G 99.4 1.8E-11 4E-16 94.0 17.5 198 128-337 98-309 (445)
245 PRK03629 tolB translocation pr 99.4 2.7E-10 5.8E-15 96.2 25.3 194 126-339 196-408 (429)
246 PRK05137 tolB translocation pr 99.4 2.2E-10 4.7E-15 97.3 24.6 196 126-341 199-416 (435)
247 KOG1064 RAVE (regulator of V-A 99.4 1.9E-12 4E-17 118.2 12.3 184 12-246 2204-2400(2439)
248 PRK11138 outer membrane biogen 99.4 7.2E-10 1.6E-14 93.0 27.2 266 22-336 116-393 (394)
249 PRK11138 outer membrane biogen 99.4 8.3E-10 1.8E-14 92.6 26.8 276 23-345 66-361 (394)
250 KOG2315 Predicted translation 99.4 7.2E-09 1.6E-13 84.6 29.9 298 17-338 35-391 (566)
251 KOG4497 Uncharacterized conser 99.4 1.1E-09 2.4E-14 83.5 23.0 293 17-331 49-426 (447)
252 KOG0309 Conserved WD40 repeat- 99.4 5.1E-12 1.1E-16 105.9 11.5 285 17-338 25-340 (1081)
253 KOG1912 WD40 repeat protein [G 99.4 2.9E-10 6.3E-15 96.1 21.7 332 3-343 42-557 (1062)
254 KOG1064 RAVE (regulator of V-A 99.4 6E-12 1.3E-16 114.9 12.5 188 55-291 2207-2401(2439)
255 PF08662 eIF2A: Eukaryotic tra 99.4 1E-10 2.2E-15 87.0 16.8 128 149-289 38-180 (194)
256 KOG4190 Uncharacterized conser 99.3 3.7E-12 8E-17 103.5 8.4 248 49-335 728-986 (1034)
257 KOG0280 Uncharacterized conser 99.3 1.3E-10 2.8E-15 87.0 14.7 185 26-242 133-331 (339)
258 PRK02889 tolB translocation pr 99.3 8.2E-10 1.8E-14 93.4 21.7 193 126-336 193-402 (427)
259 KOG4547 WD40 repeat-containing 99.3 5.7E-10 1.2E-14 91.3 19.6 187 139-339 6-222 (541)
260 TIGR02800 propeller_TolB tol-p 99.3 2.8E-09 6E-14 90.6 24.0 207 36-288 170-397 (417)
261 PF13360 PQQ_2: PQQ-like domai 99.3 2.6E-08 5.6E-13 77.8 26.8 216 34-292 1-234 (238)
262 COG5170 CDC55 Serine/threonine 99.3 1.2E-10 2.7E-15 87.9 12.4 264 16-287 26-366 (460)
263 KOG4532 WD40-like repeat conta 99.3 2.6E-09 5.7E-14 79.2 18.2 197 139-344 85-289 (344)
264 COG5354 Uncharacterized protei 99.3 3.9E-08 8.5E-13 79.6 25.9 298 15-340 31-398 (561)
265 PRK04792 tolB translocation pr 99.2 1.2E-08 2.5E-13 86.8 23.8 228 37-314 199-447 (448)
266 PRK00178 tolB translocation pr 99.2 1.8E-08 3.9E-13 85.8 24.8 228 37-314 180-428 (430)
267 KOG2041 WD40 repeat protein [G 99.2 4.1E-09 8.9E-14 88.8 20.0 274 17-336 15-336 (1189)
268 PF13360 PQQ_2: PQQ-like domai 99.2 3.2E-08 6.9E-13 77.3 24.2 213 3-250 10-236 (238)
269 TIGR02800 propeller_TolB tol-p 99.2 1.1E-08 2.3E-13 87.1 22.9 192 126-337 187-397 (417)
270 COG5170 CDC55 Serine/threonine 99.2 4.5E-10 9.8E-15 85.0 12.6 257 56-336 26-366 (460)
271 KOG4532 WD40-like repeat conta 99.2 1.4E-08 3E-13 75.4 19.9 269 33-341 49-335 (344)
272 KOG2041 WD40 repeat protein [G 99.2 6.9E-10 1.5E-14 93.3 14.2 241 56-328 14-279 (1189)
273 COG4946 Uncharacterized protei 99.2 1.3E-07 2.9E-12 76.1 26.1 165 26-233 332-507 (668)
274 KOG2315 Predicted translation 99.2 1.4E-08 3.1E-13 83.0 20.4 246 20-314 129-411 (566)
275 PF10282 Lactonase: Lactonase, 99.2 5.5E-07 1.2E-11 74.2 30.3 250 19-288 39-322 (345)
276 KOG4714 Nucleoporin [Nuclear s 99.2 6.8E-10 1.5E-14 81.8 11.6 128 130-286 181-316 (319)
277 PRK00178 tolB translocation pr 99.2 7.3E-08 1.6E-12 82.2 25.3 194 126-339 196-408 (430)
278 KOG1275 PAB-dependent poly(A) 99.1 1.9E-09 4.2E-14 92.9 14.8 183 137-335 146-340 (1118)
279 KOG2314 Translation initiation 99.1 6.6E-08 1.4E-12 79.2 22.4 298 20-338 214-574 (698)
280 PF04762 IKI3: IKI3 family; I 99.1 5.1E-07 1.1E-11 82.7 29.7 310 16-339 75-458 (928)
281 KOG2695 WD40 repeat protein [G 99.1 4E-10 8.7E-15 86.3 8.3 157 180-346 226-385 (425)
282 KOG1912 WD40 repeat protein [G 99.1 1.7E-08 3.8E-13 85.8 18.3 287 16-342 15-369 (1062)
283 KOG4714 Nucleoporin [Nuclear s 99.1 9E-10 2E-14 81.2 9.5 194 131-338 39-255 (319)
284 PLN02919 haloacid dehalogenase 99.1 4.5E-07 9.8E-12 84.6 29.4 205 131-341 626-892 (1057)
285 PRK04792 tolB translocation pr 99.1 1.6E-07 3.6E-12 79.9 24.6 192 126-337 215-425 (448)
286 COG2706 3-carboxymuconate cycl 99.1 2E-06 4.4E-11 67.1 28.9 270 35-339 15-323 (346)
287 KOG2695 WD40 repeat protein [G 99.1 4E-10 8.8E-15 86.3 7.6 143 26-199 225-379 (425)
288 KOG0882 Cyclophilin-related pe 99.1 2.4E-09 5.2E-14 85.1 12.1 283 15-345 8-313 (558)
289 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.7E-06 3.6E-11 69.9 27.9 249 4-293 35-335 (352)
290 PF00400 WD40: WD domain, G-be 99.1 4.7E-10 1E-14 59.7 5.5 37 6-42 1-39 (39)
291 KOG0309 Conserved WD40 repeat- 99.1 1.2E-09 2.6E-14 92.1 10.4 236 18-289 69-340 (1081)
292 cd00216 PQQ_DH Dehydrogenases 99.0 1.4E-06 3E-11 75.2 28.1 282 24-347 59-434 (488)
293 KOG1275 PAB-dependent poly(A) 99.0 1.1E-08 2.4E-13 88.4 14.8 181 26-242 147-340 (1118)
294 PLN02919 haloacid dehalogenase 99.0 1.7E-06 3.7E-11 80.9 29.9 251 21-291 572-891 (1057)
295 PF00400 WD40: WD domain, G-be 99.0 1.5E-09 3.2E-14 57.8 5.5 37 295-335 3-39 (39)
296 KOG2066 Vacuolar assembly/sort 99.0 3.5E-08 7.6E-13 84.3 16.1 179 16-244 39-233 (846)
297 KOG1645 RING-finger-containing 99.0 1.3E-07 2.8E-12 74.4 17.8 256 38-338 175-462 (463)
298 KOG3914 WD repeat protein WDR4 99.0 2.1E-08 4.6E-13 78.6 13.2 155 180-347 76-233 (390)
299 PRK01029 tolB translocation pr 98.9 1E-06 2.2E-11 74.5 23.1 202 128-342 184-408 (428)
300 KOG2114 Vacuolar assembly/sort 98.9 1.2E-06 2.7E-11 75.8 23.2 198 18-246 27-245 (933)
301 KOG0882 Cyclophilin-related pe 98.9 2.4E-08 5.2E-13 79.6 11.7 212 126-348 7-242 (558)
302 KOG3914 WD repeat protein WDR4 98.9 3.6E-08 7.7E-13 77.4 12.2 74 126-199 149-226 (390)
303 COG4946 Uncharacterized protei 98.9 1.3E-06 2.8E-11 70.6 21.0 166 139-326 333-507 (668)
304 KOG2066 Vacuolar assembly/sort 98.9 1.2E-07 2.6E-12 81.1 14.8 190 127-339 38-235 (846)
305 PF08596 Lgl_C: Lethal giant l 98.8 8.8E-06 1.9E-10 67.4 24.5 202 120-328 78-327 (395)
306 PRK01029 tolB translocation pr 98.8 7.1E-06 1.5E-10 69.5 24.6 233 36-314 165-425 (428)
307 KOG3621 WD40 repeat-containing 98.8 1.8E-06 3.9E-11 73.2 20.5 153 18-197 37-198 (726)
308 PF04762 IKI3: IKI3 family; I 98.8 2.4E-05 5.1E-10 72.2 29.5 290 15-339 208-566 (928)
309 PF08450 SGL: SMP-30/Gluconola 98.8 2.6E-05 5.6E-10 61.2 27.8 171 131-314 42-236 (246)
310 PF15492 Nbas_N: Neuroblastoma 98.8 2.2E-05 4.7E-10 59.7 25.0 193 130-344 45-266 (282)
311 cd00216 PQQ_DH Dehydrogenases 98.8 8.8E-06 1.9E-10 70.3 24.9 245 27-295 111-431 (488)
312 PF15492 Nbas_N: Neuroblastoma 98.8 5.2E-06 1.1E-10 62.9 20.0 187 20-247 47-262 (282)
313 KOG1645 RING-finger-containing 98.8 5.4E-07 1.2E-11 71.1 15.0 83 5-88 182-270 (463)
314 KOG2114 Vacuolar assembly/sort 98.8 1.2E-06 2.5E-11 75.9 17.7 207 130-345 27-251 (933)
315 KOG4649 PQQ (pyrrolo-quinoline 98.7 3.8E-05 8.2E-10 57.6 23.9 108 26-165 23-132 (354)
316 KOG1832 HIV-1 Vpr-binding prot 98.7 1.3E-08 2.8E-13 88.0 4.6 190 5-246 1090-1293(1516)
317 COG5354 Uncharacterized protei 98.7 2.7E-05 5.7E-10 63.8 22.7 131 148-291 255-398 (561)
318 PF06433 Me-amine-dh_H: Methyl 98.6 6.8E-05 1.5E-09 59.5 22.0 279 36-346 17-329 (342)
319 KOG1832 HIV-1 Vpr-binding prot 98.6 2.9E-08 6.3E-13 85.9 3.8 201 117-344 1090-1298(1516)
320 PF08450 SGL: SMP-30/Gluconola 98.6 0.00011 2.3E-09 57.7 23.5 196 133-346 4-221 (246)
321 COG2706 3-carboxymuconate cycl 98.6 0.00015 3.1E-09 57.1 28.4 252 15-289 38-322 (346)
322 KOG2314 Translation initiation 98.5 7.4E-05 1.6E-09 62.0 20.4 250 38-338 192-526 (698)
323 KOG1920 IkappaB kinase complex 98.5 0.00023 4.9E-09 64.8 24.5 275 17-336 69-364 (1265)
324 KOG3621 WD40 repeat-containing 98.5 3.5E-06 7.6E-11 71.5 12.6 159 130-289 37-198 (726)
325 PRK04043 tolB translocation pr 98.5 0.0002 4.4E-09 60.5 23.2 188 130-339 189-402 (419)
326 KOG1008 Uncharacterized conser 98.5 1.5E-07 3.3E-12 78.6 4.1 203 127-339 55-277 (783)
327 KOG1920 IkappaB kinase complex 98.5 0.00028 6.2E-09 64.2 24.0 236 56-339 68-324 (1265)
328 PF08596 Lgl_C: Lethal giant l 98.4 0.00012 2.7E-09 60.8 19.9 210 130-346 3-299 (395)
329 PRK04043 tolB translocation pr 98.4 0.00099 2.2E-08 56.4 25.4 206 36-290 169-402 (419)
330 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0014 3.1E-08 57.1 29.5 63 25-87 68-141 (527)
331 PHA02713 hypothetical protein; 98.4 0.0002 4.4E-09 62.9 20.7 190 137-340 303-536 (557)
332 PF03178 CPSF_A: CPSF A subuni 98.4 0.00023 4.9E-09 58.3 20.0 181 148-338 2-203 (321)
333 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00048 1E-08 51.9 19.2 106 139-251 24-130 (354)
334 PF11768 DUF3312: Protein of u 98.3 0.0013 2.8E-08 55.6 28.9 117 191-314 239-368 (545)
335 PF08553 VID27: VID27 cytoplas 98.3 0.0001 2.2E-09 65.7 17.3 137 32-195 500-646 (794)
336 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0018 3.9E-08 54.6 25.2 48 37-85 62-110 (410)
337 PF03178 CPSF_A: CPSF A subuni 98.2 0.0017 3.6E-08 53.2 22.7 177 148-334 62-262 (321)
338 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00013 2.8E-09 47.6 12.7 97 131-239 2-109 (111)
339 KOG1008 Uncharacterized conser 98.2 1.7E-06 3.7E-11 72.6 4.7 240 57-336 57-334 (783)
340 PF11768 DUF3312: Protein of u 98.2 0.0025 5.5E-08 53.9 24.6 91 239-339 239-331 (545)
341 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00027 5.9E-09 46.1 13.4 62 19-83 2-70 (111)
342 KOG2444 WD40 repeat protein [G 98.2 2.8E-06 6.1E-11 62.2 4.6 143 180-340 32-180 (238)
343 PF04053 Coatomer_WDAD: Coatom 98.2 0.0011 2.3E-08 56.1 20.2 185 130-337 70-262 (443)
344 KOG4441 Proteins containing BT 98.1 0.0017 3.7E-08 57.1 21.9 193 133-340 327-549 (571)
345 PHA02713 hypothetical protein; 98.1 0.00079 1.7E-08 59.3 19.9 149 135-291 349-536 (557)
346 KOG3617 WD40 and TPR repeat-co 98.1 0.00017 3.8E-09 63.2 15.2 69 18-86 61-133 (1416)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0055 1.2E-07 53.6 27.0 270 22-296 116-498 (527)
348 smart00320 WD40 WD40 repeats. 98.1 1.3E-05 2.8E-10 41.9 5.1 37 6-42 2-40 (40)
349 PF00780 CNH: CNH domain; Int 98.0 0.0046 1E-07 49.5 24.7 231 24-291 5-258 (275)
350 KOG4441 Proteins containing BT 98.0 0.003 6.6E-08 55.6 20.3 226 26-290 285-548 (571)
351 PF00780 CNH: CNH domain; Int 98.0 0.0058 1.3E-07 48.9 23.8 231 65-348 6-266 (275)
352 smart00320 WD40 WD40 repeats. 97.9 2.6E-05 5.6E-10 40.7 4.3 37 295-335 4-40 (40)
353 PRK02888 nitrous-oxide reducta 97.9 0.013 2.9E-07 51.0 24.2 101 187-289 295-405 (635)
354 COG5276 Uncharacterized conser 97.8 0.0091 2E-07 46.3 28.6 242 56-340 86-330 (370)
355 PF07433 DUF1513: Protein of u 97.8 0.012 2.7E-07 46.5 20.9 203 133-346 9-256 (305)
356 TIGR03074 PQQ_membr_DH membran 97.7 0.029 6.4E-07 51.1 22.5 62 26-87 194-281 (764)
357 COG5276 Uncharacterized conser 97.7 0.014 3E-07 45.3 29.1 277 17-336 87-368 (370)
358 PF06977 SdiA-regulated: SdiA- 97.7 0.014 3.1E-07 45.2 22.2 201 126-334 19-247 (248)
359 PF04841 Vps16_N: Vps16, N-ter 97.7 0.02 4.4E-07 48.5 19.9 176 149-342 62-251 (410)
360 PF08553 VID27: VID27 cytoplas 97.7 0.0018 3.9E-08 58.1 13.9 138 185-337 501-647 (794)
361 PHA03098 kelch-like protein; P 97.6 0.02 4.4E-07 50.7 20.1 191 134-339 291-513 (534)
362 PHA03098 kelch-like protein; P 97.6 0.037 8E-07 49.1 20.9 147 136-290 341-513 (534)
363 PF04053 Coatomer_WDAD: Coatom 97.5 0.013 2.9E-07 49.7 16.7 143 167-338 31-174 (443)
364 KOG4640 Anaphase-promoting com 97.5 0.00052 1.1E-08 58.2 7.6 71 266-344 28-99 (665)
365 PHA02790 Kelch-like protein; P 97.5 0.049 1.1E-06 47.4 19.6 183 139-339 273-472 (480)
366 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00058 1.2E-08 37.2 5.1 34 303-341 11-44 (47)
367 PF07433 DUF1513: Protein of u 97.4 0.039 8.5E-07 43.8 24.4 234 26-284 17-281 (305)
368 COG3386 Gluconolactonase [Carb 97.4 0.048 1E-06 43.9 22.3 103 206-313 155-264 (307)
369 KOG2079 Vacuolar assembly/sort 97.4 0.0053 1.2E-07 55.8 12.8 71 17-87 90-163 (1206)
370 KOG4640 Anaphase-promoting com 97.4 0.0015 3.3E-08 55.5 9.0 92 127-224 19-115 (665)
371 KOG2444 WD40 repeat protein [G 97.4 0.00051 1.1E-08 50.8 5.4 142 139-289 31-178 (238)
372 PRK02888 nitrous-oxide reducta 97.3 0.082 1.8E-06 46.4 19.0 71 263-338 325-405 (635)
373 KOG2395 Protein involved in va 97.3 0.0078 1.7E-07 50.5 12.3 142 28-196 348-500 (644)
374 KOG2395 Protein involved in va 97.3 0.0076 1.7E-07 50.5 11.9 141 180-336 348-499 (644)
375 KOG3617 WD40 and TPR repeat-co 97.2 0.0012 2.6E-08 58.2 7.1 115 218-343 19-137 (1416)
376 PHA02790 Kelch-like protein; P 97.2 0.11 2.4E-06 45.3 18.5 144 136-290 317-472 (480)
377 KOG2079 Vacuolar assembly/sort 97.2 0.0045 9.8E-08 56.2 10.0 108 168-286 89-201 (1206)
378 PF06977 SdiA-regulated: SdiA- 97.1 0.091 2E-06 40.9 23.1 200 10-240 15-246 (248)
379 PF06433 Me-amine-dh_H: Methyl 97.0 0.12 2.6E-06 41.7 24.8 153 139-296 148-328 (342)
380 KOG1897 Damage-specific DNA bi 96.8 0.43 9.4E-06 43.8 29.2 305 16-339 530-900 (1096)
381 KOG2280 Vacuolar assembly/sort 96.7 0.15 3.3E-06 45.2 15.3 50 37-87 65-115 (829)
382 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0055 1.2E-07 33.4 4.5 33 127-160 10-44 (47)
383 PF14583 Pectate_lyase22: Olig 96.7 0.29 6.2E-06 40.4 28.4 316 3-339 17-383 (386)
384 TIGR03074 PQQ_membr_DH membran 96.6 0.61 1.3E-05 43.0 22.1 200 139-348 195-488 (764)
385 COG3391 Uncharacterized conser 96.5 0.42 9.2E-06 40.3 20.7 198 133-344 78-290 (381)
386 COG0823 TolB Periplasmic compo 96.4 0.25 5.3E-06 42.1 14.5 133 148-291 218-361 (425)
387 PF14870 PSII_BNR: Photosynthe 96.3 0.43 9.4E-06 38.4 32.7 156 166-334 142-301 (302)
388 COG0823 TolB Periplasmic compo 96.3 0.28 6.1E-06 41.8 14.1 135 188-340 218-361 (425)
389 KOG4499 Ca2+-binding protein R 96.1 0.43 9.3E-06 36.1 17.5 98 169-271 158-264 (310)
390 PF05694 SBP56: 56kDa selenium 96.0 0.13 2.7E-06 43.0 10.4 102 146-247 220-345 (461)
391 KOG2377 Uncharacterized conser 96.0 0.3 6.4E-06 40.8 12.2 137 172-314 26-164 (657)
392 PF12234 Rav1p_C: RAVE protein 95.9 0.51 1.1E-05 42.0 14.2 111 218-337 33-156 (631)
393 PF14727 PHTB1_N: PTHB1 N-term 95.7 1.2 2.5E-05 37.8 24.2 59 179-244 146-204 (418)
394 TIGR03548 mutarot_permut cycli 95.6 1 2.2E-05 37.1 22.5 61 139-199 125-197 (323)
395 PF14655 RAB3GAP2_N: Rab3 GTPa 95.5 1.3 2.9E-05 37.4 18.2 37 139-176 80-116 (415)
396 KOG1916 Nuclear protein, conta 95.5 0.031 6.8E-07 50.3 5.4 40 139-179 196-236 (1283)
397 PF12234 Rav1p_C: RAVE protein 95.5 1.4 3E-05 39.4 15.1 101 142-244 45-156 (631)
398 PF10313 DUF2415: Uncharacteri 95.4 0.066 1.4E-06 28.3 4.5 34 304-338 1-34 (43)
399 KOG4499 Ca2+-binding protein R 95.4 0.44 9.6E-06 36.1 10.4 40 137-176 222-261 (310)
400 COG3391 Uncharacterized conser 95.4 1.4 3E-05 37.3 25.3 179 132-314 119-309 (381)
401 KOG2247 WD40 repeat-containing 95.4 0.00043 9.2E-09 57.1 -5.5 247 26-313 46-305 (615)
402 COG3386 Gluconolactonase [Carb 95.3 1.3 2.8E-05 36.0 21.4 206 26-269 37-263 (307)
403 PF10647 Gmad1: Lipoprotein Lp 95.3 1.1 2.4E-05 35.3 13.2 112 217-337 26-144 (253)
404 PF08728 CRT10: CRT10; InterP 95.3 1.8 4E-05 39.2 15.4 111 225-336 113-245 (717)
405 TIGR03548 mutarot_permut cycli 95.2 1.4 3.1E-05 36.3 23.1 138 135-279 70-233 (323)
406 PF05096 Glu_cyclase_2: Glutam 95.2 1.2 2.5E-05 34.9 22.2 194 7-233 34-249 (264)
407 PLN02193 nitrile-specifier pro 95.2 2 4.4E-05 37.5 25.1 148 138-290 229-412 (470)
408 PLN02153 epithiospecifier prot 95.1 1.6 3.5E-05 36.3 23.2 53 236-290 217-286 (341)
409 PF14761 HPS3_N: Hermansky-Pud 95.1 1 2.2E-05 33.9 15.8 57 172-233 21-78 (215)
410 KOG3630 Nuclear pore complex, 95.1 0.58 1.3E-05 43.9 12.0 124 141-271 117-254 (1405)
411 COG3292 Predicted periplasmic 95.0 2.2 4.7E-05 37.1 16.6 267 17-332 165-442 (671)
412 KOG2280 Vacuolar assembly/sort 95.0 2.5 5.4E-05 38.0 15.1 202 130-346 45-255 (829)
413 PF07569 Hira: TUP1-like enhan 95.0 0.26 5.6E-06 37.7 8.5 72 262-338 14-96 (219)
414 KOG4460 Nuclear pore complex, 94.9 1.1 2.5E-05 38.3 12.4 101 217-345 106-206 (741)
415 PF08728 CRT10: CRT10; InterP 94.8 1.4 2.9E-05 39.9 13.2 149 138-287 49-245 (717)
416 PRK13684 Ycf48-like protein; P 94.6 2.2 4.9E-05 35.3 31.1 155 168-335 172-329 (334)
417 KOG1916 Nuclear protein, conta 94.6 0.18 3.9E-06 45.8 7.4 187 148-342 111-328 (1283)
418 PF10168 Nup88: Nuclear pore c 94.5 2.8 6.1E-05 38.5 15.1 99 216-342 86-184 (717)
419 PF05096 Glu_cyclase_2: Glutam 94.5 1.8 3.9E-05 33.9 24.2 183 131-325 47-249 (264)
420 PF14727 PHTB1_N: PTHB1 N-term 94.4 2.8 6.1E-05 35.6 30.9 279 26-342 37-365 (418)
421 KOG1898 Splicing factor 3b, su 94.3 4.7 0.0001 38.0 18.2 116 218-341 937-1052(1205)
422 PF07569 Hira: TUP1-like enhan 94.2 0.48 1E-05 36.3 8.4 77 169-246 13-97 (219)
423 PLN02153 epithiospecifier prot 94.0 3.1 6.8E-05 34.6 21.8 151 138-291 33-228 (341)
424 PF11715 Nup160: Nucleoporin N 93.9 0.38 8.2E-06 42.9 8.6 75 269-343 157-254 (547)
425 PF15390 DUF4613: Domain of un 93.7 4.5 9.6E-05 35.5 14.8 116 126-246 54-188 (671)
426 PF14870 PSII_BNR: Photosynthe 93.7 3.1 6.7E-05 33.7 27.3 183 130-328 63-253 (302)
427 PF00930 DPPIV_N: Dipeptidyl p 93.6 3.7 8.1E-05 34.3 15.4 85 147-233 22-119 (353)
428 COG5167 VID27 Protein involved 93.6 2.5 5.4E-05 36.3 11.7 142 180-337 482-632 (776)
429 PRK14131 N-acetylneuraminic ac 93.2 4.7 0.0001 34.1 23.0 66 266-338 276-369 (376)
430 COG3490 Uncharacterized protei 93.2 1.6 3.5E-05 34.3 9.4 103 218-326 71-180 (366)
431 PRK13616 lipoprotein LpqB; Pro 93.0 6.7 0.00014 35.4 17.1 108 217-331 450-562 (591)
432 PF00930 DPPIV_N: Dipeptidyl p 92.9 4.9 0.00011 33.7 21.8 51 35-87 22-74 (353)
433 KOG3630 Nuclear pore complex, 92.9 1.5 3.3E-05 41.3 10.3 122 210-338 96-229 (1405)
434 PF02897 Peptidase_S9_N: Proly 92.8 5.7 0.00012 34.1 21.0 195 131-337 126-357 (414)
435 KOG2063 Vacuolar assembly/sort 92.8 7.5 0.00016 36.5 14.5 77 61-160 21-100 (877)
436 PF08801 Nucleoporin_N: Nup133 92.7 6 0.00013 34.1 14.8 31 304-338 190-220 (422)
437 COG5167 VID27 Protein involved 92.6 3.6 7.9E-05 35.4 11.4 141 29-197 483-633 (776)
438 PF13570 PQQ_3: PQQ-like domai 92.3 0.59 1.3E-05 24.3 4.6 24 21-44 16-39 (40)
439 KOG1900 Nuclear pore complex, 92.3 12 0.00025 36.5 18.5 142 145-289 96-273 (1311)
440 TIGR03547 muta_rot_YjhT mutatr 92.2 6.1 0.00013 32.9 23.7 98 224-328 199-331 (346)
441 PLN02193 nitrile-specifier pro 92.1 7.8 0.00017 34.0 22.6 192 137-339 175-412 (470)
442 COG4590 ABC-type uncharacteriz 92.0 1 2.2E-05 37.9 7.5 169 164-342 216-391 (733)
443 PF05694 SBP56: 56kDa selenium 91.9 7.2 0.00016 33.1 13.1 146 148-298 157-352 (461)
444 PF10313 DUF2415: Uncharacteri 91.8 1.1 2.4E-05 23.7 5.2 29 17-45 1-34 (43)
445 PF07995 GSDH: Glucose / Sorbo 91.8 5.8 0.00013 32.9 11.9 110 214-329 2-135 (331)
446 KOG1900 Nuclear pore complex, 91.7 8.7 0.00019 37.3 13.7 144 32-198 95-274 (1311)
447 PF14655 RAB3GAP2_N: Rab3 GTPa 91.7 3 6.6E-05 35.4 10.1 71 217-291 310-401 (415)
448 PF12341 DUF3639: Protein of u 91.5 0.7 1.5E-05 21.6 3.6 25 18-42 3-27 (27)
449 PRK14131 N-acetylneuraminic ac 91.4 8 0.00017 32.7 21.1 40 238-279 314-353 (376)
450 PF14781 BBS2_N: Ciliary BBSom 91.2 3.6 7.8E-05 28.4 12.8 65 21-87 3-84 (136)
451 COG1520 FOG: WD40-like repeat 91.1 8.6 0.00019 32.5 22.0 198 26-254 68-278 (370)
452 TIGR03547 muta_rot_YjhT mutatr 91.0 8.3 0.00018 32.2 19.4 42 236-279 168-210 (346)
453 PF10168 Nup88: Nuclear pore c 90.7 14 0.00031 34.2 21.0 32 126-157 144-180 (717)
454 PF02333 Phytase: Phytase; In 90.5 9.5 0.00021 32.0 23.9 192 139-339 69-292 (381)
455 PF08801 Nucleoporin_N: Nup133 90.5 11 0.00023 32.6 13.5 29 217-245 192-220 (422)
456 smart00564 PQQ beta-propeller 90.4 1.2 2.5E-05 21.8 4.3 27 26-52 6-32 (33)
457 COG3204 Uncharacterized protei 89.6 9.2 0.0002 30.5 17.6 163 126-289 83-264 (316)
458 KOG2377 Uncharacterized conser 89.5 12 0.00027 31.9 14.3 154 44-232 4-171 (657)
459 PF13570 PQQ_3: PQQ-like domai 89.5 1.4 3.1E-05 22.8 4.4 25 61-85 16-40 (40)
460 KOG2247 WD40 repeat-containing 89.4 0.059 1.3E-06 45.1 -1.4 135 134-280 40-180 (615)
461 TIGR02604 Piru_Ver_Nterm putat 89.3 12 0.00026 31.5 14.6 101 218-328 75-204 (367)
462 PF14761 HPS3_N: Hermansky-Pud 89.3 7.9 0.00017 29.3 14.6 152 133-287 22-213 (215)
463 COG3490 Uncharacterized protei 89.1 9.9 0.00022 30.2 14.3 96 133-233 72-180 (366)
464 PF12768 Rax2: Cortical protei 88.7 11 0.00024 30.2 11.3 116 188-314 16-147 (281)
465 PF12657 TFIIIC_delta: Transcr 88.4 6.9 0.00015 28.7 8.8 36 304-339 86-123 (173)
466 COG3823 Glutamine cyclotransfe 88.4 9.1 0.0002 28.8 12.2 174 140-325 58-247 (262)
467 PF14779 BBS1: Ciliary BBSome 88.0 6 0.00013 31.0 8.4 67 126-193 174-255 (257)
468 KOG1983 Tomosyn and related SN 87.8 16 0.00035 35.4 12.8 67 169-246 199-266 (993)
469 PF01011 PQQ: PQQ enzyme repea 87.3 1.8 3.9E-05 22.2 3.8 27 140-166 2-28 (38)
470 smart00564 PQQ beta-propeller 87.2 2.3 5E-05 20.7 4.4 26 139-164 7-32 (33)
471 PF10647 Gmad1: Lipoprotein Lp 86.4 15 0.00032 29.1 16.2 147 170-329 25-187 (253)
472 PF11715 Nup160: Nucleoporin N 86.1 4.4 9.4E-05 36.4 8.0 24 269-292 229-252 (547)
473 COG1520 FOG: WD40-like repeat 86.1 20 0.00043 30.3 22.0 148 138-293 111-273 (370)
474 KOG1983 Tomosyn and related SN 86.0 31 0.00067 33.6 13.5 26 312-341 243-268 (993)
475 PF14781 BBS2_N: Ciliary BBSom 85.7 9.7 0.00021 26.4 12.3 104 180-291 12-128 (136)
476 PLN00033 photosystem II stabil 85.2 23 0.00049 30.3 32.0 110 216-334 282-396 (398)
477 PF01011 PQQ: PQQ enzyme repea 85.0 3.1 6.7E-05 21.3 4.0 27 28-54 2-28 (38)
478 KOG4460 Nuclear pore complex, 84.2 28 0.00061 30.5 12.5 25 130-154 105-131 (741)
479 KOG3522 Predicted guanine nucl 83.8 21 0.00045 33.2 10.6 147 139-290 548-699 (925)
480 KOG3616 Selective LIM binding 83.8 36 0.00078 31.4 12.9 68 16-84 14-83 (1636)
481 TIGR02604 Piru_Ver_Nterm putat 83.6 26 0.00056 29.6 12.5 103 218-326 17-142 (367)
482 PF08309 LVIVD: LVIVD repeat; 83.1 5.2 0.00011 21.2 5.3 36 262-297 3-38 (42)
483 PF07250 Glyoxal_oxid_N: Glyox 82.5 21 0.00047 27.9 10.8 142 190-343 48-203 (243)
484 PRK13684 Ycf48-like protein; P 82.0 28 0.00062 28.9 24.7 114 216-340 174-290 (334)
485 PRK13616 lipoprotein LpqB; Pro 80.8 45 0.00097 30.4 18.7 130 148-284 430-564 (591)
486 PF14583 Pectate_lyase22: Olig 79.7 36 0.00079 28.7 22.1 161 120-288 179-381 (386)
487 PF03022 MRJP: Major royal jel 79.6 31 0.00068 27.9 18.0 167 148-325 34-253 (287)
488 COG3823 Glutamine cyclotransfe 79.2 25 0.00055 26.6 14.1 67 21-87 50-122 (262)
489 KOG3522 Predicted guanine nucl 78.8 20 0.00043 33.3 8.8 156 180-345 549-705 (925)
490 PF03088 Str_synth: Strictosid 78.8 6.1 0.00013 25.2 4.4 42 184-232 33-74 (89)
491 KOG2063 Vacuolar assembly/sort 78.4 64 0.0014 30.8 16.5 70 18-87 17-99 (877)
492 smart00036 CNH Domain found in 76.7 40 0.00087 27.6 23.9 236 67-347 14-280 (302)
493 PF02333 Phytase: Phytase; In 76.6 46 0.00099 28.2 21.1 140 148-290 127-292 (381)
494 PF15390 DUF4613: Domain of un 76.4 57 0.0012 29.2 11.2 118 169-289 57-187 (671)
495 KOG1897 Damage-specific DNA bi 75.9 77 0.0017 30.4 27.5 173 149-338 751-943 (1096)
496 PF14779 BBS1: Ciliary BBSome 75.9 37 0.00081 26.8 8.9 66 15-81 175-255 (257)
497 KOG1898 Splicing factor 3b, su 75.1 83 0.0018 30.5 16.7 134 146-288 910-1048(1205)
498 COG3204 Uncharacterized protei 75.1 42 0.00091 27.0 16.1 166 165-338 82-264 (316)
499 PF10433 MMS1_N: Mono-function 74.7 62 0.0013 28.8 21.4 244 66-353 222-498 (504)
500 PF12768 Rax2: Cortical protei 72.1 16 0.00035 29.4 6.1 55 279-340 15-75 (281)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-55 Score=329.04 Aligned_cols=294 Identities=25% Similarity=0.379 Sum_probs=264.1
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
.++-..+.||.++|.|++|+ |..|++|+.|.++|+||+.+..+..+.++|...|.+++|+ +..|++|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 34567889999999999997 8999999999999999999999999999999999999998 8999999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-------CeEEEecCCCcEEEEE
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-------GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~~~dg~v~iwd 154 (353)
|..++++ . .+.+.+|...|++++|.| .+|++++.||.|+|||
T Consensus 185 dpktg~~----~---------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 185 DPKTGQQ----I---------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred cCCCCCc----c---------------------------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 9988862 1 223348999999999987 6899999999999999
Q ss_pred cCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc----------
Q 018591 155 VADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS---------- 223 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------- 223 (353)
+..+.++..+.+|..+|+|+.| .++++++++.|++|++|+...+. +.+.+++|...+ +.++.+
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-----~~r~lkGHahwv-N~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-----LCRELKGHAHWV-NHLALSTDYVLRTGAF 307 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh-----HHHhhcccchhe-eeeeccchhhhhcccc
Confidence 9999999999999999999999 57899999999999999999987 889999998887 888776
Q ss_pred -CCCC-------------------------eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEE
Q 018591 224 -DDGK-------------------------WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCS 275 (353)
Q Consensus 224 -~~~~-------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 275 (353)
|.++ .+++|+.|.++.+|+..... +++....+|...|..+.+ +++++|+
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEE
Confidence 3233 49999999999999987653 466677888888866655 6999999
Q ss_pred ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
++.|..|++||.++++ .+..++||-++|+.++|+.| .++|++||.|.++++|++++.+..+.+.
T Consensus 385 aSFDkSVkLW~g~tGk---~lasfRGHv~~VYqvawsaD----sRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGK---FLASFRGHVAAVYQVAWSAD----SRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred eecccceeeeeCCCcc---hhhhhhhccceeEEEEeccC----ccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 9999999999999998 88999999999999999999 9999999999999999999998877765
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-53 Score=320.79 Aligned_cols=286 Identities=28% Similarity=0.417 Sum_probs=259.1
Q ss_pred CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee-EEeccCceeeEEEEEe-------CCEEEE
Q 018591 2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDGSVKAVVTV-------GNKVFT 71 (353)
Q Consensus 2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~-------~~~l~s 71 (353)
.+.+..+.++.+||...|.|++|+ |+.||+|+.||+|++||.++|+++ ..+.+|...|++++|. ..+|++
T Consensus 143 D~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 143 DLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred ccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceec
Confidence 356778899999999999999996 999999999999999999988766 6789999999999996 568999
Q ss_pred ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcE
Q 018591 72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTL 150 (353)
Q Consensus 72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v 150 (353)
++.||.++|||+..+. + ...+.+|+.+|+|+.|-. +++++|+.|++|
T Consensus 223 ~skDg~vrIWd~~~~~-----~---------------------------~~~lsgHT~~VTCvrwGG~gliySgS~DrtI 270 (480)
T KOG0271|consen 223 SSKDGSVRIWDTKLGT-----C---------------------------VRTLSGHTASVTCVRWGGEGLIYSGSQDRTI 270 (480)
T ss_pred ccCCCCEEEEEccCce-----E---------------------------EEEeccCccceEEEEEcCCceEEecCCCceE
Confidence 9999999999998765 2 233348999999999997 999999999999
Q ss_pred EEEEcCCceeeeeccccCcceEEEEEe-------------CC-------------------------eEEEEcCCCcEEE
Q 018591 151 KVWRVADLKCLESIKAHDDAVNGLVAS-------------KG-------------------------IVYSASADGKIKA 192 (353)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~-------------~~-------------------------~l~~~~~dg~i~i 192 (353)
++|+...|.+.+.+++|...|+.++.+ ++ .+++|+.|.++.+
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl 350 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL 350 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence 999999999999999999999999775 22 4999999999999
Q ss_pred EeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C
Q 018591 193 WGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G 270 (353)
Q Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 270 (353)
|+....+ .++..+.+|+..+ +.+.||||++++++++.|..|++|+.+++ ++...+++|-..|..++|+ .
T Consensus 351 W~p~~~k----kpi~rmtgHq~lV-n~V~fSPd~r~IASaSFDkSVkLW~g~tG----k~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 351 WNPFKSK----KPITRMTGHQALV-NHVSFSPDGRYIASASFDKSVKLWDGRTG----KFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred ecccccc----cchhhhhchhhhe-eeEEECCCccEEEEeecccceeeeeCCCc----chhhhhhhccceeEEEEeccCc
Confidence 9987655 3677888998876 99999999999999999999999999999 7888999999999999996 6
Q ss_pred cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
++|++|+.|.++++|++++.+ ....+.||...|.++.|+|| |..+++|+.|..+++|.
T Consensus 422 RLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~vDwspD----G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAVDWSPD----GQRVASGGKDKVLRLWR 479 (480)
T ss_pred cEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEEEecCC----CceeecCCCceEEEeec
Confidence 699999999999999999877 77789999999999999999 99999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-50 Score=306.57 Aligned_cols=274 Identities=22% Similarity=0.380 Sum_probs=251.4
Q ss_pred eCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEEEcccC
Q 018591 13 SGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 13 ~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~ 86 (353)
-|-+.+|..+.|+ ++.|+|||.+|.++||+.++...++++.+|...|.++.|. +..+++|+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3567899999996 8999999999999999999999999999999999999997 347999999999999999886
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
. .+..+ .+|...|..++|+| ++|++++.|.+-++||++++..+...
T Consensus 252 ~-----~l~~l---------------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q 299 (459)
T KOG0272|consen 252 T-----PLQDL---------------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ 299 (459)
T ss_pred c-----chhhh---------------------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh
Confidence 5 33333 38999999999999 99999999999999999999999889
Q ss_pred cccCcceEEEEE-e-CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 165 KAHDDAVNGLVA-S-KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 165 ~~~~~~v~~i~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
++|...|.+++| . +..+++|+.|..-++||+++++ .+..+.+|...+ .+++|+|+|..+++|+.|++++|||
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-----~im~L~gH~k~I-~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-----CIMFLAGHIKEI-LSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeecccCc-----EEEEecccccce-eeEeECCCceEEeecCCCCcEEEee
Confidence 999999999999 3 3388999999999999999998 888999998887 9999999999999999999999999
Q ss_pred ccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCC
Q 018591 243 GNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGG 319 (353)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 319 (353)
++.. .....+.+|..-|..+.++ |.+|++++.|++++||...+.. ++..+.||++.|.++..+|+ +
T Consensus 374 LR~r----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---~~ksLaGHe~kV~s~Dis~d----~ 442 (459)
T KOG0272|consen 374 LRMR----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---PLKSLAGHEGKVISLDISPD----S 442 (459)
T ss_pred eccc----ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc---cchhhcCCccceEEEEeccC----C
Confidence 9988 4577888999988877765 8899999999999999999887 88999999999999999999 9
Q ss_pred eEEEEccCCCeEEEEE
Q 018591 320 FLLYSGSLDKSLRVWW 335 (353)
Q Consensus 320 ~~l~s~~~dg~i~iw~ 335 (353)
++++|++.|.++++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.2e-48 Score=280.93 Aligned_cols=287 Identities=25% Similarity=0.377 Sum_probs=253.0
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
+..++|+||.+.|+++.|+ .++++++|.||.+.|||.-+....+.++-....|...+|+ ++++++|+-|+...||+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 4458999999999999995 8899999999999999999988888888889999999997 89999999999999999
Q ss_pred cccCc-cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCcee
Q 018591 83 VSRSS-ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
+.+.. +...+. .+.+.+|.+.+.|+.|.+ ..|++++.|.+..+||+++++.
T Consensus 126 ls~~d~~g~~~v---------------------------~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 126 LSTRDAEGNVRV---------------------------SRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred ccccccccccee---------------------------eeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceE
Confidence 98653 111122 233448999999999999 9999999999999999999999
Q ss_pred eeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 161 LESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
+..|.+|.+.|.++.++| +.+++|+-|+..++||++.+. ..+.+.+|...+ +++.|.|+|.-+++|+.|++
T Consensus 179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-----c~qtF~ghesDI-Nsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-----CVQTFEGHESDI-NSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-----eeEeeccccccc-ceEEEccCCCeeeecCCCce
Confidence 999999999999999944 499999999999999999998 899999999987 99999999999999999999
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA 315 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 315 (353)
.++||++..+...... .......++++++ +|++|++|..|.++.+||.-.++ .+..+.+|+..|+++..+||
T Consensus 253 cRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e---~vg~L~GHeNRvScl~~s~D- 326 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---RVGVLAGHENRVSCLGVSPD- 326 (343)
T ss_pred eEEEeecCCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeeccccc---eEEEeeccCCeeEEEEECCC-
Confidence 9999999874332222 2233455666666 49999999999999999998877 77788999999999999999
Q ss_pred CCCCeEEEEccCCCeEEEEE
Q 018591 316 VGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 316 ~~~~~~l~s~~~dg~i~iw~ 335 (353)
|..++|||.|..++||.
T Consensus 327 ---G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 ---GMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---CcEEEecchhHheeecC
Confidence 99999999999999994
No 5
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-47 Score=285.28 Aligned_cols=279 Identities=24% Similarity=0.351 Sum_probs=250.2
Q ss_pred ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 15 HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
....|+|+.++.+.+++|..|++|+|||..+..+...+.+|++.|.|+.|+...+++|+.|.+|++||+++++ +
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge-----~- 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE-----P- 269 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-----h-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999987 2
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce---eeeeccccCcce
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAV 171 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v 171 (353)
...+.+|...|..+.|+++++++++.|.++.+||+.... +.+.+.+|...|
T Consensus 270 --------------------------l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 270 --------------------------LNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred --------------------------hhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 333448999999999999999999999999999997654 345678999999
Q ss_pred EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591 172 NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK 251 (353)
Q Consensus 172 ~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 251 (353)
+.+.|++.++++++.|.+|++|++.+.+ ..+.+.+|...+ .++.+ .++++++|+.|.+|++||+..+ .
T Consensus 324 NvVdfd~kyIVsASgDRTikvW~~st~e-----fvRtl~gHkRGI-AClQY--r~rlvVSGSSDntIRlwdi~~G----~ 391 (499)
T KOG0281|consen 324 NVVDFDDKYIVSASGDRTIKVWSTSTCE-----FVRTLNGHKRGI-ACLQY--RDRLVVSGSSDNTIRLWDIECG----A 391 (499)
T ss_pred eeeccccceEEEecCCceEEEEecccee-----eehhhhcccccc-eehhc--cCeEEEecCCCceEEEEecccc----H
Confidence 9999999999999999999999999998 899999999876 66655 4889999999999999999999 7
Q ss_pred eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce------EEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
+...+.+|+.-+.|+.|+.+.+++|+.||+|++||+..+..+ .++..+..|++.|..+.|.. ..++++
T Consensus 392 cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~------fqIvss 465 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE------FQIISS 465 (499)
T ss_pred HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc------eEEEec
Confidence 888899999999999999999999999999999999887644 24556678999999999984 589999
Q ss_pred cCCCeEEEEEcCCCCCcc
Q 018591 326 SLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 326 ~~dg~i~iw~~~~~~~~~ 343 (353)
+.|.+|.|||+.++-.-+
T Consensus 466 sHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 466 SHDDTILIWDFLNGPPSA 483 (499)
T ss_pred cCCCeEEEEEcCCCCccc
Confidence 999999999998765443
No 6
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-45 Score=274.93 Aligned_cols=288 Identities=19% Similarity=0.352 Sum_probs=256.5
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
.+++.+++.||.+.|.|++++ +++|++|+.|++++|||+.+|++..++.+|-..|..++++ -.|+++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 457778899999999999998 7899999999999999999999999999999999999999 679999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||++..+ . .+-+.+|-..|.|++.+| +.|++|+.|..+++||+++.
T Consensus 220 wDLe~nk-----v---------------------------IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 220 WDLEYNK-----V---------------------------IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred Eechhhh-----h---------------------------HHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 9999876 2 334458999999999999 99999999999999999999
Q ss_pred eeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
..+..+.+|..+|..+.+. +..+++|+.|++|++||++.++ ....+..|...+ .+++.+|....+++++.|.
T Consensus 268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk-----t~~tlt~hkksv-ral~lhP~e~~fASas~dn 341 (460)
T KOG0285|consen 268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK-----TMITLTHHKKSV-RALCLHPKENLFASASPDN 341 (460)
T ss_pred ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc-----eeEeeeccccee-eEEecCCchhhhhccCCcc
Confidence 9999999999999999994 5699999999999999999998 666777777766 9999999999999999886
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccC-----CCcCeEEEE
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITG-----HEGPVKCLQ 310 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----h~~~v~~~~ 310 (353)
|+-|++..+ .+...+.+|...+.+++.+ ..++++|+.+|.+.+||.+++-+.+....... .+..|.+.+
T Consensus 342 -ik~w~~p~g----~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~ 416 (460)
T KOG0285|consen 342 -IKQWKLPEG----EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASC 416 (460)
T ss_pred -ceeccCCcc----chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEe
Confidence 999999988 6777789999999999986 77999999999999999999876655543321 245689999
Q ss_pred eecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|... |..|++|..|.+|++|.-.+.
T Consensus 417 fDkt----g~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 417 FDKT----GSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eccc----CceEEeccCCcceEEEecccc
Confidence 9998 999999999999999975543
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-44 Score=259.01 Aligned_cols=285 Identities=28% Similarity=0.402 Sum_probs=235.1
Q ss_pred CceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCC-----CceeeEEeccCceeeEEEEEe--CCEEEEecCC
Q 018591 6 HRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQP-----DLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD 75 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~-----~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 75 (353)
.....+|++|++.|+.++.. .+.+++++.|.++.+|++. .|..++.+.+|+..|..+..+ +++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 34567899999999999994 7799999999999999864 467789999999999998876 8999999999
Q ss_pred CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEE
Q 018591 76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVW 153 (353)
Q Consensus 76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iw 153 (353)
+++++||+.+++ ..+.|.+|...|.+++|++ ..+++|+.|++|++|
T Consensus 85 ~~lrlWDl~~g~--------------------------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 85 GTLRLWDLATGE--------------------------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred ceEEEEEecCCc--------------------------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 999999999875 3455569999999999999 899999999999999
Q ss_pred EcCCceeeeecccc--CcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 154 RVADLKCLESIKAH--DDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 154 d~~~~~~~~~~~~~--~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
|.. +.+..++..+ .+.|.|+.|+|+ .+++++.|+++++||+++.+ +...+.+|.+.+ +.+++||||.
T Consensus 133 nt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~~~v-~t~~vSpDGs 205 (315)
T KOG0279|consen 133 NTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHSGYV-NTVTVSPDGS 205 (315)
T ss_pred eec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhccccccccE-EEEEECCCCC
Confidence 985 4455444333 789999999554 89999999999999999988 888899999887 9999999999
Q ss_pred eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEecc-ccCC---
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGH--- 302 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h--- 302 (353)
.+++|+.||.+.+||++.++ .. ....+...|.+++|. .++.++...+..|+|||++++.....+.. ..+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k----~l-ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~ 280 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGK----NL-YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSK 280 (315)
T ss_pred EEecCCCCceEEEEEccCCc----ee-EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccc
Confidence 99999999999999999984 32 234567778888887 34555555666799999998763222211 1111
Q ss_pred --CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 303 --EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 303 --~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.-.-.+++|+++ |..|++|-.|+.|++|.+..
T Consensus 281 ~~~~~clslaws~d----G~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 281 AGDPICLSLAWSAD----GQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred cCCcEEEEEEEcCC----CcEEEeeecCCcEEEEEeec
Confidence 223577899999 99999999999999998753
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.3e-44 Score=255.07 Aligned_cols=279 Identities=22% Similarity=0.325 Sum_probs=238.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY 103 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 103 (353)
.-+|+|+|.|.+||+|...+|.+..++.+..+.|+.+... +..|++++. ..||+||++++...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------------- 74 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------------- 74 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--------------
Confidence 4589999999999999999999999999999999999987 556666665 59999999988732
Q ss_pred eeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--
Q 018591 104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-- 179 (353)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-- 179 (353)
+...+.+|...|+++.|.. ..+++|++||+++|||++...+.+.++ |..+|+++..+++
T Consensus 75 ----------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt 137 (311)
T KOG0315|consen 75 ----------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT 137 (311)
T ss_pred ----------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc
Confidence 3445558999999999987 899999999999999999977777764 6799999999554
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc--cceeeeeecc
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI--VRWKLACETK 257 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~ 257 (353)
.|+++..+|.|++||+.... +...+.......+.++...|||.+++.+...|..++|++-... ....+...++
T Consensus 138 eLis~dqsg~irvWDl~~~~-----c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENS-----CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ 212 (311)
T ss_pred eEEeecCCCcEEEEEccCCc-----cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee
Confidence 89999999999999999886 5555555555667999999999999999999999999987643 2345666778
Q ss_pred ccceeEEEE--EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 258 AHEMAVLCV--CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 258 ~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
.|...++.+ +|++++|++++.|.+++||+.++. +..-..+.+|...+...+||.| +.||++|+.|+.+++|+
T Consensus 213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~d----g~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSAD----GEYLVTASSDHTARLWD 286 (311)
T ss_pred cccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccC----ccEEEecCCCCceeecc
Confidence 888877665 556999999999999999999876 3355568899999999999999 99999999999999999
Q ss_pred cCCCCCcccccC
Q 018591 336 VSKQSSTSDSEE 347 (353)
Q Consensus 336 ~~~~~~~~~~~~ 347 (353)
++.++.+.+...
T Consensus 287 ~~~~k~v~qy~g 298 (311)
T KOG0315|consen 287 LSAGKEVRQYQG 298 (311)
T ss_pred cccCceeeecCC
Confidence 999998877653
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-43 Score=261.99 Aligned_cols=283 Identities=21% Similarity=0.333 Sum_probs=252.8
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
..+.+.+.||..+|+.+-|+ -..+++++.|++|++||..++++...+.+|...+..+.|+ |.++++++.|=.+++|
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 34567788999999999997 4577888899999999999999999999999999999998 8999999999889999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
|.++... + .+...+|...|.++.|-| +++++++.|.+|+.|++.++.
T Consensus 178 d~~~~~~----c---------------------------~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~ 226 (406)
T KOG0295|consen 178 DFDTFFR----C---------------------------IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY 226 (406)
T ss_pred eHHHHHH----H---------------------------HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce
Confidence 9876321 1 122238999999999999 999999999999999999999
Q ss_pred eeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC------------
Q 018591 160 CLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD------------ 225 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------ 225 (353)
++.++.+|...|..+.... + .+++++.|.++++|-+.+++ +...++.|+..+ .+++|-|.
T Consensus 227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-----~k~~lR~hEh~v-Eci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-----CKAELREHEHPV-ECIAWAPESSYPSISEATGS 300 (406)
T ss_pred eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-----hhhhhhccccce-EEEEecccccCcchhhccCC
Confidence 9999999999999999933 3 88899999999999999987 777888888766 89998662
Q ss_pred ---CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEecccc
Q 018591 226 ---GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT 300 (353)
Q Consensus 226 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 300 (353)
++++.+++.|++|++||+.++ .+..++.+|...|..++++ |+||+++..|+++++||+++.+ ++..+.
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~---cmk~~~ 373 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ---CMKTLE 373 (406)
T ss_pred CCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce---eeeccC
Confidence 258999999999999999999 7888899999999998887 9999999999999999999887 888889
Q ss_pred CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
.|+..++++.|..+ ..+++||+-|.++++|.-
T Consensus 374 ah~hfvt~lDfh~~----~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKT----APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcceeEEEecCCC----CceEEeccccceeeeeec
Confidence 99999999999999 789999999999999974
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-43 Score=284.05 Aligned_cols=334 Identities=19% Similarity=0.327 Sum_probs=264.6
Q ss_pred CCCCCceeeeeeC-ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecC
Q 018591 2 PCKSHRSLAVLSG-HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQ 74 (353)
Q Consensus 2 ~~~~~~~~~~l~~-h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~ 74 (353)
.+++++.++.++. |++||.-++|+ +.+|++|+.||.|+|||+..+.+...|.+|.+.|.++.|. ...|++|..
T Consensus 90 ~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 90 SLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred EcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCC
Confidence 4678899999998 99999999997 8899999999999999999999999999999999999998 346899999
Q ss_pred CCcEEEEEcccCcc---------c-----------------------------eeEEeeccccc----------------
Q 018591 75 DSRIRVWKVSRSSE---------N-----------------------------VFRLVDTLPTT---------------- 100 (353)
Q Consensus 75 dg~i~~w~~~~~~~---------~-----------------------------~~~~~~~~~~~---------------- 100 (353)
|+++++||+++... . ..+....+|..
T Consensus 170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~ 249 (775)
T KOG0319|consen 170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK 249 (775)
T ss_pred CceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence 99999999985431 0 00000000000
Q ss_pred cceeeeeccc-------------------------------------------c--------------------------
Q 018591 101 KDYLGKFMKQ-------------------------------------------S-------------------------- 111 (353)
Q Consensus 101 ~~~~~~~~~~-------------------------------------------~-------------------------- 111 (353)
..++...-.. .
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 0000000000 0
Q ss_pred -------e------------eEeecccceeeeeecCCceEEEE-EeC-CeEEEecCCCcEEEEEcCCc----eeeeeccc
Q 018591 112 -------N------------YVQTRRHHKRLWIEHADSISCLT-VYN-GLIYSGSWDKTLKVWRVADL----KCLESIKA 166 (353)
Q Consensus 112 -------~------------~~~~~~~~~~~~~~~~~~i~~~~-~~~-~~l~~~~~dg~v~iwd~~~~----~~~~~~~~ 166 (353)
+ +.......-.++.+|...|.++. +.. .+|++|+.|+++++|.++++ .++....+
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 0 00001111123448999999999 444 59999999999999987443 34566789
Q ss_pred cCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccce----eeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 167 HDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLK----GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 167 ~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
|.+.|.++++ ...+|+++|.|+++++|++...+....++. .....|...+ ++++++|+.+++++|+.|.+.+
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI-N~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI-NCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc-cceEecCCCceEEeccccccee
Confidence 9999999999 334999999999999999987432222222 2445677666 9999999999999999999999
Q ss_pred EeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (353)
+|+++.. .....+.+|...+.++.|. .+.+++++.|++|+||.+.+.. ++.++.||+..|..+.|-.+
T Consensus 489 iW~le~~----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---ClkT~eGH~~aVlra~F~~~--- 558 (775)
T KOG0319|consen 489 IWDLEQL----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---CLKTFEGHTSAVLRASFIRN--- 558 (775)
T ss_pred eecccCc----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce---eeeeecCccceeEeeeeeeC---
Confidence 9999966 7888999999999999987 5699999999999999999887 99999999999999999999
Q ss_pred CCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 318 GGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 318 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
++.|+|++.||-|++|++++..|+.++..
T Consensus 559 -~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 559 -GKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred -CcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 99999999999999999999999987764
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-42 Score=269.49 Aligned_cols=288 Identities=20% Similarity=0.258 Sum_probs=250.8
Q ss_pred eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC----ceeeEEec----------cCceeeEEEEEe--CCEEE
Q 018591 10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD----LRMFTKFG----------HGDGSVKAVVTV--GNKVF 70 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~----~~~~~~~~----------~~~~~v~~~~~~--~~~l~ 70 (353)
..++ |+.+|.+.+|+ ...+++|+.|-..++|++.. +.....++ .....|++++|+ |+.|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3445 99999999997 44899999999999999864 11111111 124689999998 99999
Q ss_pred EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591 71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK 148 (353)
Q Consensus 71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg 148 (353)
+|+.||.+++|+..... + ..+..|.++|.++.|+. ++|++++.|+
T Consensus 252 tG~~~G~~riw~~~G~l------~---------------------------~tl~~HkgPI~slKWnk~G~yilS~~vD~ 298 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNL------I---------------------------STLGQHKGPIFSLKWNKKGTYILSGGVDG 298 (524)
T ss_pred EeecCcEEEEEecCchh------h---------------------------hhhhccCCceEEEEEcCCCCEEEeccCCc
Confidence 99999999999987654 1 22237999999999999 8999999999
Q ss_pred cEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 149 TLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
++.+||..+++..+.+..|..+-..+.| +++.+++++.|+.|+++.+.... +...+.+|.+.+ .++.|+|.+.
T Consensus 299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-----P~~t~~GH~g~V-~alk~n~tg~ 372 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-----PVKTFIGHHGEV-NALKWNPTGS 372 (524)
T ss_pred cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC-----cceeeecccCce-EEEEECCCCc
Confidence 9999999999999999999988788999 77799999999999999998887 888899998887 9999999999
Q ss_pred eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-----------CcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-----------GEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
+|++++.|++++||+.... .....+..|...|..+.|+ +..+++++.|++|++||+..+. ++
T Consensus 373 LLaS~SdD~TlkiWs~~~~----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---~i 445 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQS----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---PI 445 (524)
T ss_pred eEEEecCCCeeEeeecCCC----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---ee
Confidence 9999999999999998877 6777788899888887774 4589999999999999999988 78
Q ss_pred ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCC
Q 018591 297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK 348 (353)
Q Consensus 297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 348 (353)
..+..|..+|++++|+|+ |+++|+|+.||.|.+|+.++++..+.....
T Consensus 446 ~~f~kH~~pVysvafS~~----g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPN----GRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred EeeccCCCceEEEEecCC----CcEEEecCCCCeeEeccccchheeEeecCC
Confidence 889899999999999999 999999999999999999999988877654
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-42 Score=253.46 Aligned_cols=283 Identities=21% Similarity=0.323 Sum_probs=243.9
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe-CCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ-QPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd-~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
.++..+.||++.|+.+.|+ |.+||||+.|..|.+|+ ....+-...+++|.+.|..+.|. ++.+++++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4667889999999999996 99999999999999999 55667778889999999999997 8999999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~ 158 (353)
|.++++ . .+.+.+|..-|+++.... .++.+++.|+++++||+++.
T Consensus 118 D~~tG~-----~---------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 118 DAETGK-----R---------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred ecccce-----e---------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 999987 2 223337888898888554 78899999999999999999
Q ss_pred eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+++++++. ..+++++.| ..+.+++|+-|+.|++||++... ....+.+|.+.+ +.+..+|+|.++.+-+.|.
T Consensus 166 ~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~lsGh~DtI-t~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 166 EAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-----GLYTLSGHADTI-TGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred chhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCc-----ceEEeecccCce-eeEEeccCCCccccccccc
Confidence 99888854 678999999 44499999999999999999888 889999999987 9999999999999999999
Q ss_pred cEEEeeccccccceeeeeeccccce----e--EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEM----A--VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~----~--v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~ 310 (353)
++++||++.-.+...++..+.+|.- . -.+.++++..+.+|+.|..+++||..... .+..+.||.+.|.+++
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---ILYKLPGHYGSVNEVD 315 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---EEEEcCCcceeEEEee
Confidence 9999999876544454554444321 2 24455568899999999999999988766 7888999999999999
Q ss_pred eecCCCCCCeEEEEccCCCeEEEEE
Q 018591 311 ASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
|+|. ..+|.+++.|.+|.+=+
T Consensus 316 Fhp~----e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 316 FHPT----EPIILSCSSDKTIYLGE 336 (338)
T ss_pred ecCC----CcEEEEeccCceeEeec
Confidence 9999 89999999999998643
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.2e-41 Score=243.73 Aligned_cols=288 Identities=23% Similarity=0.340 Sum_probs=237.9
Q ss_pred CceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC---ceeeEEe-ccCceeeEEEEEe--CCEEEEecCCC
Q 018591 6 HRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD---LRMFTKF-GHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~---~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
...++.+++|++.|..++|+ |..|||++.|+.||+|+... -.+...+ .+|+..|.+++|+ +++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 34578899999999999998 44899999999999999875 3344344 5789999999997 99999999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
++.||.-..++ +.++..+ .||..+|.|++|++ ++||+++.|+.|-+|.
T Consensus 84 t~~Iw~k~~~e---fecv~~l---------------------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 84 TVVIWKKEDGE---FECVATL---------------------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred eEEEeecCCCc---eeEEeee---------------------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 99999977554 3444443 38999999999999 9999999999999999
Q ss_pred cCC---ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591 155 VAD---LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV 229 (353)
Q Consensus 155 ~~~---~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 229 (353)
+.. .++...++.|...|..+.|+| ++|++++.|.+|++|+-..+ ....+...+.+|...+ .+++|+|.|..|
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TV-W~~~F~~~G~rl 210 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTV-WSLAFDNIGSRL 210 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccceE-EEEEecCCCceE
Confidence 863 568889999999999999976 69999999999999987732 2345788899998865 999999999999
Q ss_pred EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc---ceEEec-cccCCCcC
Q 018591 230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG---KLCRVG-AITGHEGP 305 (353)
Q Consensus 230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~-~~~~h~~~ 305 (353)
++++.|++++||-.... ....|...+..+.++...|++++.|+.|++|.-...- ....+. .-..|...
T Consensus 211 ~s~sdD~tv~Iw~~~~~--------~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d 282 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTD--------LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD 282 (312)
T ss_pred EEecCCcceEeeeeccC--------cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc
Confidence 99999999999976532 1234667788888888899999999999999866421 111222 34578899
Q ss_pred eEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
|++++|.|. ...+|++++.||.|++|.+.
T Consensus 283 VNsV~w~p~---~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 283 VNSVQWNPK---VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEEEcCC---CCCceeecCCCceEEEEEec
Confidence 999999994 26799999999999999875
No 14
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-41 Score=240.78 Aligned_cols=277 Identities=17% Similarity=0.314 Sum_probs=237.8
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~ 83 (353)
.++.|.+|+++|..+.|+ |+|.++++.|.+|++|+...+.+++++.+|...|..++.+ +..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 467899999999999996 9999999999999999999999999999999999988765 788999999999999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC--ce
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD--LK 159 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~--~~ 159 (353)
++++ . .+.|.+|.+.|+.+.|+. ..+++|+.|..+++||.++ .+
T Consensus 89 ~TGk-----v---------------------------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 89 NTGK-----V---------------------------DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred ccCe-----e---------------------------eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 9987 2 445559999999999998 8999999999999999875 57
Q ss_pred eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 160 CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
+++.+......|.++...+..+++|+.||++|.||++.++ ... ...+.+|+++.|+++++..++++.|++++
T Consensus 137 PiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~-----l~s---Dy~g~pit~vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGT-----LSS---DYFGHPITSVSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred ccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecce-----eeh---hhcCCcceeEEecCCCCEEEEeeccceee
Confidence 8899988889999999999999999999999999999987 333 33344569999999999999999999999
Q ss_pred EeeccccccceeeeeeccccceeEE----EEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcC-eEEEEeecC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVL----CVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP-VKCLQASPN 314 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~ 314 (353)
+.|-.++ ++....++|...-. |+.-+..++++|++||.|++||+.+.. .+..+..+... |.++.+.|.
T Consensus 209 LlDk~tG----klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~---~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 209 LLDKETG----KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET---QISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred ecccchh----HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce---eeeeeccCCceeEEeeecccC
Confidence 9999999 67777777765443 333347799999999999999999877 56667777777 899999998
Q ss_pred CCCCCeEEEEccCCCeEEEEEc
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
...|+++..- .+..|.-
T Consensus 282 ----~~~f~~A~~~-~~~~~~~ 298 (307)
T KOG0316|consen 282 ----MDDFITATGH-GDLFWYQ 298 (307)
T ss_pred ----ccceeEecCC-ceeceee
Confidence 6667777543 4566643
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-43 Score=268.36 Aligned_cols=242 Identities=19% Similarity=0.295 Sum_probs=221.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC----CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC----GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
.+..+.+.+|.||++.|.++.|+ +..||||+.||++++|++++-.++..+.+|...|..++|+ |++|+|++.|.
T Consensus 204 ~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~ 283 (459)
T KOG0272|consen 204 VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS 283 (459)
T ss_pred cCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc
Confidence 35567899999999999999996 4589999999999999999999999999999999999998 99999999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
+-++||++++.+...+ .||...|.+++|.+ .++++|+.|..-++||
T Consensus 284 tWRlWD~~tk~ElL~Q--------------------------------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 284 TWRLWDLETKSELLLQ--------------------------------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred chhhcccccchhhHhh--------------------------------cccccccceeEecCCCceeeccCccchhheee
Confidence 9999999998742222 29999999999999 8999999999999999
Q ss_pred cCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEe
Q 018591 155 VADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYG 231 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 231 (353)
+++++++..+.+|..+|.+++|+|+ .+++|+.|++++|||++..+ ....+.+|.+.+ +.+.|+| .|.+|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~-----~ly~ipAH~nlV-S~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS-----ELYTIPAHSNLV-SQVKYSPQEGYFLVT 405 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc-----cceecccccchh-hheEecccCCeEEEE
Confidence 9999999999999999999999555 89999999999999999887 688889999876 9999999 7899999
Q ss_pred ecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEe
Q 018591 232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWK 286 (353)
Q Consensus 232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~ 286 (353)
++.|+++++|...+. .+...+.+|...|.++.. ++..+++++.|+++++|.
T Consensus 406 asyD~t~kiWs~~~~----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTW----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCc----ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999887 788889999999988866 588999999999999996
No 16
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.8e-43 Score=262.71 Aligned_cols=251 Identities=23% Similarity=0.349 Sum_probs=226.7
Q ss_pred CCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEc
Q 018591 4 KSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~ 83 (353)
.+..++..|.||++.|.|+.|+.+.+++||.|.+|+|||+++++++.++-+|...|..+.|+++++++++.|.++.+||+
T Consensus 225 n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm 304 (499)
T KOG0281|consen 225 NSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDM 304 (499)
T ss_pred ccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEec
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeee
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLES 163 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 163 (353)
...... ...+++.||...|+.+.|+..++++++.|.+|++|++.+++++++
T Consensus 305 ~sps~i-----------------------------t~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRt 355 (499)
T KOG0281|consen 305 ASPTDI-----------------------------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT 355 (499)
T ss_pred cCchHH-----------------------------HHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehh
Confidence 876411 113445599999999999999999999999999999999999999
Q ss_pred ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591 164 IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG 243 (353)
Q Consensus 164 ~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 243 (353)
+.+|...|-|+.+.+.++++|+.|.+|++||+..+. +++.+++|..-+ .++.|. .+.+++|..||+|++||+
T Consensus 356 l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~-----cLRvLeGHEeLv-RciRFd--~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 356 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-----CLRVLEGHEELV-RCIRFD--NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred hhcccccceehhccCeEEEecCCCceEEEEeccccH-----HHHHHhchHHhh-hheeec--CceeeeccccceEEEEec
Confidence 999999999999999999999999999999999998 999999999877 999997 568999999999999999
Q ss_pred cccccce-----eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591 244 NVEIVRW-----KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 244 ~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
....... -+...+..|.+.|..+.|+...+++++.|.+|.|||..++.
T Consensus 428 ~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 428 QAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred ccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 8864321 13445667899999999999999999999999999998754
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=269.50 Aligned_cols=284 Identities=18% Similarity=0.330 Sum_probs=241.3
Q ss_pred ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
+.++++.||+..|+++.|. +.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+ +..+++++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 5678999999999999994 89999999999999999765 99999999999999999998 899999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~ 157 (353)
||++++. ++..+ .-...++|+.|+| +.+++|+.|+.|+.||+++
T Consensus 285 wDtETG~-----~~~~f----------------------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 285 WDTETGQ-----VLSRF----------------------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred eccccce-----EEEEE----------------------------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence 9999997 33332 2345678999988 7899999999999999999
Q ss_pred ceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591 158 LKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD 235 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 235 (353)
++.++++..|-+.|..+.| .+..+++.+.|+++++|+.+.+- +......+......++..+|+++++++-+.|
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-----PIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-----cchhhcchhhccCcceecCCCCCeehhhccC
Confidence 9999999999999999999 34499999999999999998876 3333222222234789999999999999999
Q ss_pred CcEEEeeccccccceeeeeecccccee----EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMA----VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~ 311 (353)
..|.+|.+... ........+.+|..+ -..++++|++|++|+.||.+.+||.++-+ .+..+++|.+++..+.|
T Consensus 407 N~i~ifs~~~~-~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---l~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 407 NYIAIFSTVPP-FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---LVSKLKAHDQPCIGVDW 482 (503)
T ss_pred ceEEEEecccc-cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---hhhccccCCcceEEEEe
Confidence 99999996553 233344456666543 24456679999999999999999999877 78889999999999999
Q ss_pred ecCCCCCCeEEEEccCCCeEEEEE
Q 018591 312 SPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
+|-. ...+|+++.||.|++|+
T Consensus 483 HP~e---~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVE---PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCC---cceeEecccCceeEecC
Confidence 9974 56899999999999996
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.8e-42 Score=261.94 Aligned_cols=276 Identities=21% Similarity=0.339 Sum_probs=241.5
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
+.+|..|.|. |+.|++|+..|.+.+|+..+......+..|..+|.++.|+ +.++++|+.+|.|++|+.+.....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-- 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-- 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH--
Confidence 4588999995 8999999999999999987766666678999999999998 899999999999999998765411
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDD 169 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 169 (353)
.+. ..|...|++++|+| ..+++++.||+|+|||....+....+.+|.-
T Consensus 174 ----~~~--------------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw 223 (464)
T KOG0284|consen 174 ----IIQ--------------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW 223 (464)
T ss_pred ----Hhh--------------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC
Confidence 111 14569999999999 8999999999999999999988889999999
Q ss_pred ceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591 170 AVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 170 ~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 247 (353)
.|.+++|++ +++++++.|..|++||.+++. ++..+..|...+ ..+.|+|++++|++++.|..+++||+++.
T Consensus 224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKntV-l~~~f~~n~N~Llt~skD~~~kv~DiR~m- 296 (464)
T KOG0284|consen 224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKNTV-LAVKFNPNGNWLLTGSKDQSCKVFDIRTM- 296 (464)
T ss_pred CcceeccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccceE-EEEEEcCCCCeeEEccCCceEEEEehhHh-
Confidence 999999944 499999999999999999998 888999998876 99999999999999999999999999965
Q ss_pred cceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591 248 VRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS 324 (353)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s 324 (353)
+-...+++|...++++.|. ..+|.+|+.||.|..|.+...+. ....-.+|...|++++|+|- |.+|++
T Consensus 297 ---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p--~~~i~~AHd~~iwsl~~hPl----Ghil~t 367 (464)
T KOG0284|consen 297 ---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP--LGEIPPAHDGEIWSLAYHPL----GHILAT 367 (464)
T ss_pred ---HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc--ccCCCcccccceeeeecccc----ceeEee
Confidence 5666788999999999875 78999999999999999985442 22234589999999999999 999999
Q ss_pred ccCCCeEEEEEcCCC
Q 018591 325 GSLDKSLRVWWVSKQ 339 (353)
Q Consensus 325 ~~~dg~i~iw~~~~~ 339 (353)
|+.|.++++|.-..+
T Consensus 368 gsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRP 382 (464)
T ss_pred cCCCcceeeeccCCC
Confidence 999999999976543
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-39 Score=254.08 Aligned_cols=325 Identities=22% Similarity=0.329 Sum_probs=253.7
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec---cCceeeEEEEEe--CCEEEEecCCCc
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG---HGDGSVKAVVTV--GNKVFTAHQDSR 77 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~s~~~dg~ 77 (353)
..+.-.+++.|..-|+|+.|+ |.++||++.||+|.+||-.+++.+..+. +|.+.|.+++|+ +..+++++.|.+
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 345566788899999999996 9999999999999999999999999997 899999999998 789999999999
Q ss_pred EEEEEcccCccceeEEeeccccc----cceeeeecccce-----------eEe-ecccceeeeeecCCceEEEEEeC--C
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTT----KDYLGKFMKQSN-----------YVQ-TRRHHKRLWIEHADSISCLTVYN--G 139 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~i~~~~~~~--~ 139 (353)
+++||+.+.+ ++.+++.. ...++....... ++. .......++.+|...|+++..++ .
T Consensus 259 ~KIWdVs~~s-----lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~ 333 (603)
T KOG0318|consen 259 IKIWDVSTNS-----LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK 333 (603)
T ss_pred EEEEEeeccc-----eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence 9999999886 33333322 222222222222 111 11224566779999999999999 8
Q ss_pred eEEEecCCCcEEEEEcCCceeeeec-cccCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCccc---------------
Q 018591 140 LIYSGSWDKTLKVWRVADLKCLESI-KAHDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHC--------------- 202 (353)
Q Consensus 140 ~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~--------------- 202 (353)
+|++|+.||.|.-||..++..-+.. +.|...|.+++... +.+++.+.|.++++.++.......
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav 413 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAV 413 (603)
T ss_pred EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEE
Confidence 9999999999999999988765554 67999999999955 799999999999999774332100
Q ss_pred -----------ccceeeeec-------cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE
Q 018591 203 -----------HSLKGILEG-------HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL 264 (353)
Q Consensus 203 -----------~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 264 (353)
..-+..++. .......+++++|+++.+++|+.|+.+++|.+...... .......|..+++
T Consensus 414 ~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~--ee~~~~~h~a~iT 491 (603)
T KOG0318|consen 414 LSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK--EEAKLLEHRAAIT 491 (603)
T ss_pred cCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc--ceeeeecccCCce
Confidence 000011111 11222478999999999999999999999999886432 2233456777777
Q ss_pred EEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 265 CVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 265 ~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
++++ ++.+||+|...+.+.+||+.+.+. ....+.-|+..|.+++|+|+ ..++|||+.|-.|.||+++.+...
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhh
Confidence 6665 589999999999999999998764 44455669999999999999 999999999999999999987654
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=271.79 Aligned_cols=290 Identities=19% Similarity=0.252 Sum_probs=253.0
Q ss_pred CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEE-Ee-CCEEEEecCCCcE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV-TV-GNKVFTAHQDSRI 78 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~-~~~l~s~~~dg~i 78 (353)
.+.+++..+-|..+.|.+++|= .++||.++..+.+|+++..+..+. .+.+|+..|.++. ++ |.+|++|+.|.++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 5677888889999999999994 589999999999999998887776 8899999999998 44 7799999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~ 155 (353)
++|.++.+..... + .....+|...|.+++++. ..|++++.|+++++|++
T Consensus 390 ilWr~~~~~~~~~-~---------------------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 390 ILWRLNNNCSKSL-C---------------------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred EEEEecCCcchhh-h---------------------------hhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 9999955442111 1 112238999999999976 89999999999999999
Q ss_pred CCcee-----e----eeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591 156 ADLKC-----L----ESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD 224 (353)
Q Consensus 156 ~~~~~-----~----~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (353)
...+. + .....|...|+++++.+ ..+++||.|.+.++|++++.. +..++.+|...+ .++.|+|
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLsGH~RGv-w~V~Fs~ 515 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLSGHTRGV-WCVSFSK 515 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-----EEEEeeCCccce-EEEEecc
Confidence 76221 1 12357999999999943 399999999999999999777 899999999987 9999999
Q ss_pred CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCC
Q 018591 225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH 302 (353)
Q Consensus 225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h 302 (353)
..+.+++++.|.+|+||.+.+. .+..++.+|...|....| ++..|++++.||-+++|++.+.+ ++.++.+|
T Consensus 516 ~dq~laT~SgD~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e---C~~tlD~H 588 (775)
T KOG0319|consen 516 NDQLLATCSGDKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE---CEMTLDAH 588 (775)
T ss_pred ccceeEeccCCceEEEEEeccc----eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---hhhhhhhc
Confidence 9999999999999999999988 889999999999998888 59999999999999999999988 99999999
Q ss_pred CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+..|++++.+|. ..+++||+.||.|.+|.=.+.
T Consensus 589 ~DrvWaL~~~~~----~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 589 NDRVWALSVSPL----LDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred cceeEEEeecCc----cceeEecCCCeEEEEeecCcH
Confidence 999999999999 889999999999999964443
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=244.82 Aligned_cols=287 Identities=18% Similarity=0.246 Sum_probs=234.4
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
..+.+|..|+++|.+++.+ .++++||+.|..-.+|+..+++....+.+|...|+++.|+ +.+|++|+.+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 4567899999999999996 7899999999999999999999999999999999999998 99999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
..++.... .+...-..|.-+.|+| ..|++|+.||.+.+|.+.+...
T Consensus 135 ~stg~~~~--------------------------------~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 135 VSTGGEQW--------------------------------KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred cccCceEE--------------------------------EeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce
Confidence 98876211 1113445677888998 8899999999999999998888
Q ss_pred eeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccc---------------------------------
Q 018591 161 LESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSL--------------------------------- 205 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------- 205 (353)
.+.+.+|..++++=.| +++ .++++..||+|++||+.++.+.....
T Consensus 183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 8889999999999998 444 89999999999999998876310000
Q ss_pred -----eeeee--------ccCCc--eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC
Q 018591 206 -----KGILE--------GHKDV--SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG 270 (353)
Q Consensus 206 -----~~~~~--------~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 270 (353)
..... .+... .|.++.++..-.+.++|+-||+|.|||+.....+ ..-.|...|+.+.|.+
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R-----~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR-----HICEHEDGVTKLKWLN 337 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-----eeccCCCceEEEEEcC
Confidence 00000 00011 1122233334456789999999999999887322 2334677799999986
Q ss_pred -cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 271 -EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 271 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
.+|++++.+|.|+.||.++++ ++..+.||...|.+++++|+ .++++|+|.|++.+||+++
T Consensus 338 t~~l~t~c~~g~v~~wDaRtG~---l~~~y~GH~~~Il~f~ls~~----~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDARTGQ---LKFTYTGHQMGILDFALSPQ----KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cchheeeccCceEEeeeccccc---eEEEEecCchheeEEEEcCC----CcEEEEecCCCeEEEEecC
Confidence 899999999999999999998 88889999999999999999 9999999999999999875
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-40 Score=272.65 Aligned_cols=274 Identities=22% Similarity=0.309 Sum_probs=222.2
Q ss_pred EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591 51 KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA 128 (353)
Q Consensus 51 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
++......++|..|+ +..+|.|..|..|++|.+...+....+-...+........... ....-.......+.+.+|.
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~-~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD-VDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchh-hhhccccCCceeEEeecCC
Confidence 333345567788787 6678888888899999887543211111111111100000000 0111112233445578999
Q ss_pred CceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCccccc
Q 018591 129 DSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHS 204 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~ 204 (353)
++|....|+| ++|++++.|+++++|.+.+..++-.+++|..+|+.+.|.|. ++++++.|++.++|......
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~----- 526 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK----- 526 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-----
Confidence 9999999999 89999999999999999999999999999999999999554 99999999999999998877
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeE
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSI 282 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i 282 (353)
+.+.+.+|...+ .|+.|+|+..++++|+.|.++++||..++ .....+.+|..+|.++.++ |++|++|+.||.|
T Consensus 527 PlRifaghlsDV-~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 527 PLRIFAGHLSDV-DCVSFHPNSNYVATGSSDRTVRLWDVSTG----NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred chhhhccccccc-ceEEECCcccccccCCCCceEEEEEcCCC----cEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 889999999887 99999999999999999999999999999 5677789999999888765 9999999999999
Q ss_pred EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
.+||+.+++ .+..+.+|++.|.++.|+.+ |..||+|+.|.+|++||+......
T Consensus 602 ~iWDl~~~~---~v~~l~~Ht~ti~SlsFS~d----g~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 602 KIWDLANGS---LVKQLKGHTGTIYSLSFSRD----GNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EEEEcCCCc---chhhhhcccCceeEEEEecC----CCEEEecCCCCeEEEEEchhhccc
Confidence 999999988 78889999999999999999 999999999999999999876554
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-39 Score=252.03 Aligned_cols=270 Identities=20% Similarity=0.273 Sum_probs=239.2
Q ss_pred CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
..|++++|+ |.+||+|+.||.+++|+. +|.++.++..|.++|.++.|+ |++|++++.||++.+||..++..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~---- 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV---- 310 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE----
Confidence 579999997 999999999999999995 788899999999999999999 89999999999999999987762
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 171 (353)
. +.+.-|..+-..+.|-. +.+++++.|+.|+++.+....++.++.+|.++|
T Consensus 311 -~---------------------------q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V 362 (524)
T KOG0273|consen 311 -K---------------------------QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV 362 (524)
T ss_pred -E---------------------------EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence 1 12224666667788887 899999999999999999999999999999999
Q ss_pred EEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC---------CeEEeecCCCcEEE
Q 018591 172 NGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG---------KWVYGGGSDGFVMG 240 (353)
Q Consensus 172 ~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i 240 (353)
.++.|+ ..+|++++.|++++||...... ....+..|...+ ..+.|+|.+ ..+++++.|++|++
T Consensus 363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~~l~~Hskei-~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSDDGTLKIWSMGQSN-----SVHDLQAHSKEI-YTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred EEEEECCCCceEEEecCCCeeEeeecCCCc-----chhhhhhhccce-eeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 999995 4499999999999999988877 778889998887 889999864 46899999999999
Q ss_pred eeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591 241 WEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG 318 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 318 (353)
||+..+ .+...+..|..+|.+++++ |+++|+|+.||.|.+|+.++++ .++.+.+ .+.|..++|+.+
T Consensus 437 wdv~~g----v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~---l~~s~~~-~~~Ifel~Wn~~---- 504 (524)
T KOG0273|consen 437 WDVESG----VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK---LVKSYQG-TGGIFELCWNAA---- 504 (524)
T ss_pred EEccCC----ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh---eeEeecC-CCeEEEEEEcCC----
Confidence 999999 6778888999999998886 9999999999999999999988 5555554 556999999999
Q ss_pred CeEEEEccCCCeEEEEEcC
Q 018591 319 GFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 319 ~~~l~s~~~dg~i~iw~~~ 337 (353)
|..|..+-.||.+++-|+.
T Consensus 505 G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 505 GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCEEEEEecCCCceEEEec
Confidence 8999999999999999875
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=259.95 Aligned_cols=325 Identities=19% Similarity=0.296 Sum_probs=256.0
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCcee--eEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRM--FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
..+.+++.||.+.|+++.|+ .++|++|+.|-++++|+++..+- ...+.+|...|.+..|. ...+++.+.||.+.
T Consensus 135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~ 214 (893)
T KOG0291|consen 135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALF 214 (893)
T ss_pred ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEE
Confidence 45667889999999999995 78999999999999999887665 56678999999999887 66799999999999
Q ss_pred EEEcccCc----------------------cc-----eeEEe--ecccc-------------------------------
Q 018591 80 VWKVSRSS----------------------EN-----VFRLV--DTLPT------------------------------- 99 (353)
Q Consensus 80 ~w~~~~~~----------------------~~-----~~~~~--~~~~~------------------------------- 99 (353)
+|..+... +. .+... ..+..
T Consensus 215 ~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel 294 (893)
T KOG0291|consen 215 VWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL 294 (893)
T ss_pred EEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEec
Confidence 99887110 00 00000 00000
Q ss_pred -----------ccceee--eecccceeEeecccc---eeee-----------eecCCceEEEEEeC--CeEEEecCCCcE
Q 018591 100 -----------TKDYLG--KFMKQSNYVQTRRHH---KRLW-----------IEHADSISCLTVYN--GLIYSGSWDKTL 150 (353)
Q Consensus 100 -----------~~~~~~--~~~~~~~~~~~~~~~---~~~~-----------~~~~~~i~~~~~~~--~~l~~~~~dg~v 150 (353)
....+. .+...++.+..+... ..+| .+|...+++++++| +++++|+.||.|
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 000000 000001122221111 1111 38999999999999 699999999999
Q ss_pred EEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 151 KVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
++||..++-|..+|..|...|+.+.| .++.+++++.||+|+.||+...+ ..+++.........+++..|.|..
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-----NfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-----NFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-----eeeeecCCCceeeeEEEEcCCCCE
Confidence 99999999999999999999999999 66699999999999999999887 677777777766689999999999
Q ss_pred EEeecCCC-cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcC
Q 018591 229 VYGGGSDG-FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP 305 (353)
Q Consensus 229 l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~ 305 (353)
+++|+.|. .|.+|+++++ ++...+.+|+++|.++++ ++..|++|+.|.+|++||+-.... .+.+ -.+...
T Consensus 450 V~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--~vEt-l~i~sd 522 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--TVET-LEIRSD 522 (893)
T ss_pred EEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc--eeee-Eeeccc
Confidence 99999887 7999999999 788899999999997555 599999999999999999876532 1222 236678
Q ss_pred eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+.+++|.|+ |+.|++++.||.|.+||++...++..++
T Consensus 523 vl~vsfrPd----G~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 523 VLAVSFRPD----GKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred eeEEEEcCC----CCeEEEEEecceEEEEEhhhceeecccc
Confidence 999999999 9999999999999999999887776554
No 25
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4e-39 Score=270.48 Aligned_cols=285 Identities=25% Similarity=0.465 Sum_probs=242.5
Q ss_pred eeeeeeCc-cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 8 SLAVLSGH-VGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 8 ~~~~l~~h-~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
....+.+| ...|.++.|+ |+++++++.|+.+++|+...++ ....+.+|...|..++|+ +.++++++.|++|++
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 34555555 7899999996 8999999999999999998887 777888999999999998 789999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||+.... ...+.+.+|...|++++|+| +++++|+.|++|++||++++
T Consensus 230 wd~~~~~-------------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 230 WDLKDDG-------------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred eeccCCC-------------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 9994432 12344458999999999999 79999999999999999999
Q ss_pred eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-eeeEEEEcCCCCeEEeecCC
Q 018591 159 KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-SLNSVVVSDDGKWVYGGGSD 235 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d 235 (353)
+++..+.+|...|++++| .+..+++++.|+.|++||+.++... +...+..+... +++.+.|+|++.++++++.|
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 999999999999999999 3448999999999999999988621 23455666555 67999999999999999999
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEE-----EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCC-CcCeEEE
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH-EGPVKCL 309 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~ 309 (353)
+.+++||+... .......+|...+.|+ ...+.++++|+.|+.|++|++.++. .+..+.+| ...+..+
T Consensus 356 ~~~~~w~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 356 RTLKLWDLRSG----KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---ILQRLEGHSKAAVSDL 428 (456)
T ss_pred CeEEEEEccCC----cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc---hhhhhcCCCCCceecc
Confidence 99999999987 4555555665543333 2248899999999999999999876 67778899 8999999
Q ss_pred EeecCCCCCCeEEEEcc--CCCeEEEEEcC
Q 018591 310 QASPNAVGGGFLLYSGS--LDKSLRVWWVS 337 (353)
Q Consensus 310 ~~~~~~~~~~~~l~s~~--~dg~i~iw~~~ 337 (353)
.++|. ..++++++ .|+.+++|..+
T Consensus 429 ~~~~~----~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 429 SSHPT----ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCC----cCeeeecCcCCCceEEEecCC
Confidence 99999 89999998 79999999764
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3e-38 Score=254.19 Aligned_cols=278 Identities=33% Similarity=0.527 Sum_probs=235.3
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~ 84 (353)
++++++|.++|++++|+ +++|++++.||.|++|++.+++....+..|...+..+.|. ++.+++++.||.|++|+++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 46788999999999997 6899999999999999999998888888999999889887 5689999999999999998
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
.+. . ...+..|...+.++.|++ .++++++.|+.|.+||+++++...
T Consensus 82 ~~~-----~---------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 82 TGE-----C---------------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred ccc-----c---------------------------eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 753 1 122236788999999999 677777779999999999899999
Q ss_pred eccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591 163 SIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 163 ~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 240 (353)
.+..|...+.++.+.+ + ++++++.++.|++||++..+ ....+..+...+ .++.|+|+++.+++++.++.+++
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATLTGHTGEV-NSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeEecCcccc-ceEEECCCcCEEEEecCCCcEEE
Confidence 8888999999999944 3 66666669999999998776 556666666555 99999999999999999999999
Q ss_pred eeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591 241 WEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG 318 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 318 (353)
||++.. .....+..|...+.++.++ +.++++++.||.|++|++.+++ .+..+.+|...|.+++|+|+
T Consensus 204 ~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~---- 272 (289)
T cd00200 204 WDLSTG----KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---CVQTLSGHTNSVTSLAWSPD---- 272 (289)
T ss_pred EECCCC----ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce---eEEEccccCCcEEEEEECCC----
Confidence 999876 4445555667778777775 5788888889999999998766 55556689999999999999
Q ss_pred CeEEEEccCCCeEEEEE
Q 018591 319 GFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 319 ~~~l~s~~~dg~i~iw~ 335 (353)
+.+|++++.||.|++|+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 89999999999999996
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-39 Score=232.23 Aligned_cols=256 Identities=20% Similarity=0.245 Sum_probs=212.3
Q ss_pred ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR 122 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (353)
.....++++|++.|.+++.. .+.+++++.|.++.+|++..... ....+.+
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~---------------------------~~G~~~r 57 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI---------------------------KYGVPVR 57 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---------------------------ccCceee
Confidence 34566789999999999987 67899999999999999976531 1123456
Q ss_pred eeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCC
Q 018591 123 LWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELG 198 (353)
Q Consensus 123 ~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~ 198 (353)
.+.||...|..+..++ ++.++++.|+.+++||+.+++..+.|.+|...|.++++++ ..+++|+.|.+|++||....
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 6779999999999998 8999999999999999999999999999999999999943 39999999999999999876
Q ss_pred CcccccceeeeeccC-CceeeEEEEcCC--CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEE
Q 018591 199 KSHCHSLKGILEGHK-DVSLNSVVVSDD--GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFL 273 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l 273 (353)
. ......+. ...|.++.|+|+ ..+|++++.|++|++||+++- +....+.+|...+..+ +|||.+.
T Consensus 138 c------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 138 C------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLC 207 (315)
T ss_pred E------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEE
Confidence 4 33333332 444599999998 689999999999999999987 6667777888777655 5579999
Q ss_pred EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
++|+.||.+.+||++.++ .+..+ +|...|.+++|+|+ ...| .+..+..|+|||++++..+.++..
T Consensus 208 asGgkdg~~~LwdL~~~k---~lysl-~a~~~v~sl~fspn----rywL-~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGK---NLYSL-EAFDIVNSLCFSPN----RYWL-CAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred ecCCCCceEEEEEccCCc---eeEec-cCCCeEeeEEecCC----ceeE-eeccCCceEEEeccchhhhhhccc
Confidence 999999999999999988 44443 57889999999997 4444 444566799999999988877654
No 28
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.1e-39 Score=243.95 Aligned_cols=279 Identities=27% Similarity=0.379 Sum_probs=236.2
Q ss_pred ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-----CCEEEEecCCCcEEEEEcccCccc
Q 018591 15 HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSRSSEN 89 (353)
Q Consensus 15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~~~~~ 89 (353)
|.+.|.++...++.+++|+.||.+++||. .|+....+.+|.++|.++++. ...+++++.|.++++|.++.++..
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 88999999888999999999999999995 789999999999999988885 345999999999999999877521
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC----------
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD---------- 157 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~---------- 157 (353)
.. . ...-.||...|-++...+ ..+++|+.|..|.+|+..+
T Consensus 183 ~~-~---------------------------~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 183 VK-A---------------------------LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred hh-H---------------------------HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence 10 0 011128999999999887 8999999999999999321
Q ss_pred ---------------ceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591 158 ---------------LKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV 221 (353)
Q Consensus 158 ---------------~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (353)
+.++..+.+|..+|.++.| +...+++++.|.+|+.||+.++. ....+..... .+++.
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~-----~~~~~~~~ks--l~~i~ 307 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG-----LKSTLTTNKS--LNCIS 307 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc-----ceeeeecCcc--eeEee
Confidence 2355667899999999999 55699999999999999999987 5555544433 59999
Q ss_pred EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEecc
Q 018591 222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGA 298 (353)
Q Consensus 222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 298 (353)
.+|..++|++|+.|..+++||.+++. .......+.+|...|.++.++ ..+|++|+.|+++++||+++.+. ++..
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--plyd 384 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYD 384 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--ccee
Confidence 99999999999999999999999874 334567788999999999886 56899999999999999998664 5777
Q ss_pred ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+.+|...|.++.|.. +.++++||.|.+|+|+.-.
T Consensus 385 I~~h~DKvl~vdW~~-----~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IAGHNDKVLSVDWNE-----GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eccCCceEEEEeccC-----CceEEeccCcceEEEeccc
Confidence 899999999999996 6799999999999999754
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-38 Score=224.56 Aligned_cols=269 Identities=17% Similarity=0.287 Sum_probs=226.7
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
..+|++.++++...+.|+.+... +++||+|+. -.||+||+.++. ++.++++|+..|.++.|. |+.+++|++||
T Consensus 27 a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 27 ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence 46899999999888999999994 777887776 589999998765 688999999999999997 99999999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
+++|||++... +.+. ..|..+|+++..+| ..|++|..+|.|++||
T Consensus 106 t~kIWdlR~~~-----~qR~----------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 106 TVKIWDLRSLS-----CQRN----------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred eEEEEeccCcc-----cchh----------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 99999998754 1111 16789999999999 8899999999999999
Q ss_pred cCCceeeeec-cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCc-ccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 155 VADLKCLESI-KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKS-HCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 155 ~~~~~~~~~~-~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
+.+..+...+ .....+|.++.. ++.+++++...|..++|++-.... ....+...++.|...+ ..+.+||++++|+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i-l~C~lSPd~k~la 231 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI-LRCLLSPDVKYLA 231 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE-EEEEECCCCcEEE
Confidence 9988776665 334568888888 334888999999999999876542 2344566788898887 9999999999999
Q ss_pred eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591 231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC 308 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 308 (353)
+++.|.+++||+.+.. ++....+.+|...+....|+ +.||++|+.|+.+++|++..++ .++...+|-.+..+
T Consensus 232 t~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k---~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK---EVRQYQGHHKAAVC 305 (311)
T ss_pred eecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc---eeeecCCcccccEE
Confidence 9999999999999876 45666778898888877775 8999999999999999999988 77788999888887
Q ss_pred EEee
Q 018591 309 LQAS 312 (353)
Q Consensus 309 ~~~~ 312 (353)
++..
T Consensus 306 ~~ln 309 (311)
T KOG0315|consen 306 VALN 309 (311)
T ss_pred EEee
Confidence 7654
No 30
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=266.24 Aligned_cols=284 Identities=27% Similarity=0.407 Sum_probs=256.9
Q ss_pred eeeC-ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEE-eccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 11 VLSG-HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTK-FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 11 ~l~~-h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
.+.+ |...+.+..|+++++++++.|++|++||..++..+.. +.+|.+.|.++++. ++++++|+.|.++++||..++
T Consensus 202 ~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred eecccCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 3443 6778899999999999999999999999999999888 99999999999999 999999999999999999888
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
. +. ..+.+|...|.++...+..+++|+.|.+|++|++.++.++..+.+
T Consensus 282 ~-----C~---------------------------~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~ 329 (537)
T KOG0274|consen 282 E-----CT---------------------------HSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG 329 (537)
T ss_pred c-----EE---------------------------EEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecc
Confidence 7 33 334489999999999999999999999999999999999999999
Q ss_pred cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 167 HDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 167 ~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
|.++|.++....+.+++|+.|++|++||+.+.+ ++..+.+|...+ .++.+.+. ..+++|+.|+.|++||+++.
T Consensus 330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-----cl~sl~gH~~~V-~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-----CLKSLSGHTGRV-YSLIVDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred ccccEEEEEecCCEEEEEecCceEEEEEhhhce-----eeeeecCCcceE-EEEEecCc-ceEEeeeeccceEeecCCch
Confidence 999999999999999999999999999999888 999999999887 89988775 79999999999999999987
Q ss_pred ccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC-CCcCeEEEEeecCCCCCCeEEEEc
Q 018591 247 IVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
. ++...+.+|...+..+...+++|++++.|++|++||..+++ ++..+.+ |.+.|+++++.. ..++++
T Consensus 403 ~---~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~---~~~~~~~~~~~~v~~l~~~~------~~il~s 470 (537)
T KOG0274|consen 403 R---KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE---CLRTLEGRHVGGVSALALGK------EEILCS 470 (537)
T ss_pred h---hhhhhhcCCcccccccccccceeEeccccccEEEeecccCc---eeeeeccCCcccEEEeecCc------ceEEEE
Confidence 4 57778889999999999999999999999999999999988 6777777 678899998872 478889
Q ss_pred cCCCeEEEEEcCCCCCcccc
Q 018591 326 SLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 326 ~~dg~i~iw~~~~~~~~~~~ 345 (353)
+.||++++||+++++.....
T Consensus 471 ~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 471 SDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecCCeeEEEecccCchhhhh
Confidence 99999999999999877644
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-39 Score=244.85 Aligned_cols=283 Identities=22% Similarity=0.347 Sum_probs=230.4
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC---ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD---LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
..+.|..|++.|+-+.|+ |++||||+.|.+..+|++.. .+...++.+|..+|..+.|+ .++|++++.|..+++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 356788999999999996 99999999999999998643 34578889999999999998 789999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||+.++. +....+. ++...+.+.+|.| ..+++|+.|+.+..||++ +
T Consensus 296 wDv~tgd-----~~~~y~~--------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-g 343 (519)
T KOG0293|consen 296 WDVDTGD-----LRHLYPS--------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-G 343 (519)
T ss_pred ccCCcch-----hhhhccc--------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-c
Confidence 9999987 3333322 4567899999999 789999999999999985 4
Q ss_pred eeeeecccc-CcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591 159 KCLESIKAH-DDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD 235 (353)
Q Consensus 159 ~~~~~~~~~-~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 235 (353)
......++- ...|.+++. .+..+++.+.|..|++++.++.. .......+. +++++..|.+++++++.-.+
T Consensus 344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-----dr~lise~~--~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-----DRGLISEEQ--PITSFSISKDGKLALVNLQD 416 (519)
T ss_pred chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh-----hhccccccC--ceeEEEEcCCCcEEEEEccc
Confidence 555555543 356888988 33488888899999999988764 222333332 35999999999999999999
Q ss_pred CcEEEeeccccccceeeeeeccccceeE----EEEEE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAV----LCVCL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v----~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~ 310 (353)
..+++||++.. +.+....+|...- .|+.- +..++++|++|+.|+||+..+++ ++..+.||...|++++
T Consensus 417 qei~LWDl~e~----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 417 QEIHLWDLEEN----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVS 489 (519)
T ss_pred CeeEEeecchh----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEe
Confidence 99999999976 5555556655432 23322 35799999999999999999988 8889999999999999
Q ss_pred eecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|+|.+ -.++|+||+||+||||.....
T Consensus 490 wNP~~---p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 490 WNPAD---PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCCC---HHHhhccCCCCeEEEecCCcc
Confidence 99984 579999999999999987754
No 32
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=232.56 Aligned_cols=281 Identities=22% Similarity=0.346 Sum_probs=236.3
Q ss_pred eeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 10 AVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
.+-.||+.+|..++|+ |-+|++++.||.-.+-+-++|.-+.+|.+|.+.|+....+ ...-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4678999999999996 7799999999999999999999999999999999999888 45677889999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK- 159 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~- 159 (353)
.-++. .+..+ .|..-|.+++|+. ++|++|+.+..++++|++..+
T Consensus 88 a~tgd-----elhsf----------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 88 AVTGD-----ELHSF----------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred hhhhh-----hhhhh----------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence 98876 33333 6888999999998 899999999999999998754
Q ss_pred eeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 160 CLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
+..++.+|.+.|..+.| .+..+++++.|++||+||.+++. ..+.+.... .|+++.++++|+++.++. .+.
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----~v~sL~~~s--~VtSlEvs~dG~ilTia~-gss 206 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----EVQSLEFNS--PVTSLEVSQDGRILTIAY-GSS 206 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----EEEEEecCC--CCcceeeccCCCEEEEec-Cce
Confidence 56788999999999999 66688999999999999999997 555555443 359999999998776664 556
Q ss_pred EEEeeccccccceeeeeecc-ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc-cCCCcCeEEEEeecCC
Q 018591 238 VMGWEGNVEIVRWKLACETK-AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI-TGHEGPVKCLQASPNA 315 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~ 315 (353)
|..||..+-. +..... .......++.|+...+++|+.|..++.||..+++ .+..+ ++|-++|.|+.|+|+
T Consensus 207 V~Fwdaksf~----~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge---Ei~~~nkgh~gpVhcVrFSPd- 278 (334)
T KOG0278|consen 207 VKFWDAKSFG----LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE---EIGSYNKGHFGPVHCVRFSPD- 278 (334)
T ss_pred eEEecccccc----ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCc---eeeecccCCCCceEEEEECCC-
Confidence 9999998752 222222 2233455677788899999999999999999998 44444 899999999999999
Q ss_pred CCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 316 VGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 316 ~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
|...++||+||+|++|....++..
T Consensus 279 ---GE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 279 ---GELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ---CceeeccCCCceEEEEEecCCCch
Confidence 999999999999999998766543
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.7e-38 Score=259.15 Aligned_cols=264 Identities=19% Similarity=0.315 Sum_probs=224.7
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc-------------------------------eeeEEeccC
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL-------------------------------RMFTKFGHG 55 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~-------------------------------~~~~~~~~~ 55 (353)
..++..-...++|..|+ +.+||.|-.|..|++|.+... ....++-+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 34444445689999996 779999999999999997631 123456789
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
.++|....|+ .++|++++.|+++|+|.+++.. ....+.+|..+|.+
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s--------------------------------~~V~y~GH~~PVwd 498 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS--------------------------------CLVIYKGHLAPVWD 498 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccce--------------------------------eEEEecCCCcceee
Confidence 9999999998 7899999999999999998876 23444599999999
Q ss_pred EEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591 134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 209 (353)
+.|+| -++++++.|++.++|.....++++.+.+|-+.|.|+.|+|+ ++++||.|.++|+||..++. ..+.+
T Consensus 499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF 573 (707)
T KOG0263|consen 499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIF 573 (707)
T ss_pred EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEe
Confidence 99999 79999999999999999999999999999999999999555 99999999999999999998 78999
Q ss_pred eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591 210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~ 287 (353)
.+|...+ .+++|+|+|++|++|+.||.|.+||+..+ .+...+.+|.+.+.+++++ |..||+|+.|++|++||+
T Consensus 574 ~GH~~~V-~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 574 TGHKGPV-TALAFSPCGRYLASGDEDGLIKIWDLANG----SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cCCCCce-EEEEEcCCCceEeecccCCcEEEEEcCCC----cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999887 99999999999999999999999999998 7788888999999888775 999999999999999998
Q ss_pred CCCcce---------------------EEeccccCCCcCeEEEEeecC
Q 018591 288 EAFGKL---------------------CRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 288 ~~~~~~---------------------~~~~~~~~h~~~v~~~~~~~~ 314 (353)
...... ..+..+.....+|..+.|.-.
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr 696 (707)
T KOG0263|consen 649 TKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRR 696 (707)
T ss_pred hhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence 643211 123334444557777777765
No 34
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=225.38 Aligned_cols=252 Identities=17% Similarity=0.243 Sum_probs=217.6
Q ss_pred eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591 48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
..+++++|.+.|.++.|. .+++++++.||.+.|||.-+.. ....+|
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-----K~haip--------------------------- 94 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-----KVHAIP--------------------------- 94 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-----ceeEEe---------------------------
Confidence 347889999999999998 7899999999999999987765 222221
Q ss_pred ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------eeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCC
Q 018591 126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------KCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKE 196 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~ 196 (353)
-....|...+|+| +.+++|+.|+...||++.+. ...+++.+|.+.+.|+.| +++.|++++.|.+..+||++
T Consensus 95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE 174 (343)
T ss_pred cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc
Confidence 4567899999999 89999999999999999754 345678999999999999 77799999999999999999
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEE
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFL 273 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l 273 (353)
+++ ....+.+|.+.+ .++.++| +++.+++|+-|+..++||++.+ ...+.+.+|...|.++.| +|.-+
T Consensus 175 ~g~-----~~~~f~GH~gDV-~slsl~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 175 TGQ-----QTQVFHGHTGDV-MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred cce-----EEEEecCCcccE-EEEecCCCCCCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCee
Confidence 998 888999999987 9999999 8999999999999999999998 788889999988877665 69999
Q ss_pred EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
++|+.|++.|+||++...++.. .....-..+|++++||.. |++|+.|..|.++.+||.-+++....+.
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~-ys~~~~~~gitSv~FS~S----GRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAV-YSHDSIICGITSVAFSKS----GRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred eecCCCceeEEEeecCCcEEee-eccCcccCCceeEEEccc----ccEEEeeecCCceeEeeccccceEEEee
Confidence 9999999999999998774322 222334568999999999 9999999999999999998887766544
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=248.37 Aligned_cols=330 Identities=23% Similarity=0.304 Sum_probs=250.4
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
.+....-+|.||..+|+++.|+ |..|+|||.|+.|.+||+-...-...+.+|...|+.+.|. .+.+++.+.|+.|+
T Consensus 95 ~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 95 ESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIK 174 (888)
T ss_pred CCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEE
Confidence 3456778999999999999997 9999999999999999998888889999999999998887 67899999999999
Q ss_pred EEEcccCcccee----------------EEee----------cc--ccc-------------------------------
Q 018591 80 VWKVSRSSENVF----------------RLVD----------TL--PTT------------------------------- 100 (353)
Q Consensus 80 ~w~~~~~~~~~~----------------~~~~----------~~--~~~------------------------------- 100 (353)
+||+++...... .++. .+ +..
T Consensus 175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF 254 (888)
T ss_pred EEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence 999987641000 0000 00 000
Q ss_pred cceeeeeccc------------------------------c------e-------------------------eEeeccc
Q 018591 101 KDYLGKFMKQ------------------------------S------N-------------------------YVQTRRH 119 (353)
Q Consensus 101 ~~~~~~~~~~------------------------------~------~-------------------------~~~~~~~ 119 (353)
...+..+... . + .......
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 0000000000 0 0 0000000
Q ss_pred c------------------------------eeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeec----
Q 018591 120 H------------------------------KRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESI---- 164 (353)
Q Consensus 120 ~------------------------------~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~---- 164 (353)
+ .-.+.+|...|.+++++. +.++..+..+.+++|+..+.++++++
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y 414 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGY 414 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecccc
Confidence 0 011238889999999998 55555556788999998877776664
Q ss_pred ------------------------------------cccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCccc----
Q 018591 165 ------------------------------------KAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHC---- 202 (353)
Q Consensus 165 ------------------------------------~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~---- 202 (353)
++|.+.|++++. +++ .+++|+.|.+|++||..-....+
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 368999999999 333 89999999999999975322100
Q ss_pred --ccc--eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEe
Q 018591 203 --HSL--KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSG 276 (353)
Q Consensus 203 --~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~ 276 (353)
..+ .+.++-. + .|.++.+|||+++|+++--|.++++|-+.+- ++...+.+|.-+|.|+. |+++++++|
T Consensus 495 k~lsl~~~rtLel~-d-dvL~v~~Spdgk~LaVsLLdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTg 568 (888)
T KOG0306|consen 495 KVLSLKHTRTLELE-D-DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTG 568 (888)
T ss_pred eeeeeccceEEecc-c-cEEEEEEcCCCcEEEEEeccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEec
Confidence 001 1122222 2 2599999999999999999999999999987 78889999999998875 569999999
Q ss_pred cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+.|.+|++|-++-|. +-..+.+|...|.++.|.|. ...+.++|.|+.|+-||-.+-+.++...
T Consensus 569 SADKnVKiWGLdFGD---CHKS~fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 569 SADKNVKIWGLDFGD---CHKSFFAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred cCCCceEEeccccch---hhhhhhcccCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeec
Confidence 999999999999888 88899999999999999998 8999999999999999998888777665
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-37 Score=246.47 Aligned_cols=283 Identities=21% Similarity=0.302 Sum_probs=244.8
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~ 84 (353)
.+++..|++.|.++.++ ...++++-.+|.|.|||.++...++.+....-+|.+..|- .+.+++|+.|..|++++.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34566799999999998 6799999999999999999999999999999999999887 7899999999999999999
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-ceee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-LKCL 161 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-~~~~ 161 (353)
+.+ . ...+..|...|.|++.+| .++++++.|-.|++||.+. ..+.
T Consensus 86 t~e-----k---------------------------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~ 133 (794)
T KOG0276|consen 86 TGE-----K---------------------------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE 133 (794)
T ss_pred cce-----e---------------------------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee
Confidence 887 2 344558999999999999 8999999999999999975 5788
Q ss_pred eeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC--CeEEeecCCC
Q 018591 162 ESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG--KWVYGGGSDG 236 (353)
Q Consensus 162 ~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg 236 (353)
+++++|...|.+++|+| +.+++++.|++|++|.+.+.. +..++++|...+ +++.+-+.| .+|++|+.|.
T Consensus 134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----~nfTl~gHekGV-N~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----PNFTLEGHEKGV-NCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----CceeeeccccCc-ceEEeccCCCcceEEecCCCc
Confidence 99999999999999933 499999999999999999887 788999999987 999998744 6999999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.+++||.++. .++.++.+|...|.++.|. -.++++|+.||+++||+..+.+ ....+.-.-+.|++++-.+.
T Consensus 208 tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~---lE~tLn~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 208 TIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK---LEKTLNYGLERVWCIAAHKG 280 (794)
T ss_pred eEEEeecchH----HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---hhhhhhcCCceEEEEeecCC
Confidence 9999999998 7888999999998888886 4589999999999999988766 44445555678999998887
Q ss_pred CCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
+..++.|.+.|.|. .++....+
T Consensus 281 ----~~~i~vG~Deg~i~-v~lgreeP 302 (794)
T KOG0276|consen 281 ----DGKIAVGFDEGSVT-VKLGREEP 302 (794)
T ss_pred ----CCeEEEeccCCcEE-EEccCCCC
Confidence 67788888777653 34444333
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.7e-36 Score=269.64 Aligned_cols=281 Identities=17% Similarity=0.211 Sum_probs=220.4
Q ss_pred eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc----e----eeEEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591 12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL----R----MFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRI 78 (353)
Q Consensus 12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~----~----~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i 78 (353)
+.+|.+.|++++|+ +++||+|+.|+.|+|||..+. . ....+.+ ...+.+++|+ +.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeE
Confidence 44599999999996 899999999999999997532 1 1223333 4578889986 6789999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~ 155 (353)
++||+.++. .+ ..+.+|...|++++|++ .+|++|+.||.|++||+
T Consensus 558 ~lWd~~~~~-----~~---------------------------~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 558 QVWDVARSQ-----LV---------------------------TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred EEEECCCCe-----EE---------------------------EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 999998764 22 22237999999999986 68999999999999999
Q ss_pred CCceeeeeccccCcceEEEEE-e--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591 156 ADLKCLESIKAHDDAVNGLVA-S--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~i~~-~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
+++..+..+..+ ..+.++.| + +..+++|+.||.|++||+++.+ .....+.+|...+ .++.|. ++.+++++
T Consensus 606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~~~~~h~~~V-~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLCTMIGHSKTV-SYVRFV-DSSTLVSS 678 (793)
T ss_pred CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccceEecCCCCCE-EEEEEe-CCCEEEEE
Confidence 999888888654 67899998 3 3489999999999999998764 1345566777765 999997 67899999
Q ss_pred cCCCcEEEeecccccc--ceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCcceEE--------e--cc
Q 018591 233 GSDGFVMGWEGNVEIV--RWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFGKLCR--------V--GA 298 (353)
Q Consensus 233 ~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~--~~ 298 (353)
+.|+.|++||+..... .......+.+|...+.++. +++.+|++|+.|+.|++|+......... + ..
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence 9999999999975321 1234556677777665554 4589999999999999999765432110 0 01
Q ss_pred ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
...|...|.+++|+|+ +..|++|+.||.|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~----~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQ----SSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCC----CCeEEEecCCCcEEEEec
Confidence 2345667999999999 999999999999999986
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-36 Score=245.27 Aligned_cols=300 Identities=15% Similarity=0.247 Sum_probs=244.2
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCC-CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQG-KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR 77 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 77 (353)
++...+++.|.--..+|..++|+ |+.||.|+.. |.+-||++++...+....+|...+.+++++ |+++++|+.||.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 46677888888878899999998 9999998875 899999999999999999999999999998 789999999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
|++||...+- +..+ +..|+..|+.+.|+. +.+++++.||+|+.||+
T Consensus 374 VKvWn~~Sgf-----C~vT---------------------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 374 VKVWNTQSGF-----CFVT---------------------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred EEEEeccCce-----EEEE---------------------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 9999998775 4333 348999999999998 89999999999999999
Q ss_pred CCceeeeecccc-CcceEEEEEe--CCeEEEEcCCC-cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591 156 ADLKCLESIKAH-DDAVNGLVAS--KGIVYSASADG-KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG 231 (353)
Q Consensus 156 ~~~~~~~~~~~~-~~~v~~i~~~--~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 231 (353)
...+..+++... .....|++.. +..+.+|+.|. .|.+|++++++ ++..+.+|.+++ .+++|+|.+..|++
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEgPV-s~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEGPV-SGLSFSPDGSLLAS 495 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCCcc-eeeEEccccCeEEe
Confidence 999999988653 2344566663 34666666665 59999999998 899999999987 99999999999999
Q ss_pred ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEE----------------
Q 018591 232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR---------------- 295 (353)
Q Consensus 232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------- 295 (353)
++.|.+|++||+-......+... ..+...-.++.|+|+.|+++..||.|.+||.....+...
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred ccccceEEEEEeeccCceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence 99999999999876532222211 123334455566799999999999999999886553211
Q ss_pred -eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 296 -VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 296 -~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
...-.......+.+++++| |..+++||..+.|++|++.++-.++..+
T Consensus 574 ~ta~~sa~~K~Ftti~ySaD----G~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSAD----GKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred eehhhcccCCceEEEEEcCC----CCEEEecCCcccEEEEECchhheeeeEE
Confidence 1111122357899999999 9999999999999999999987776544
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3e-37 Score=231.75 Aligned_cols=248 Identities=21% Similarity=0.339 Sum_probs=219.3
Q ss_pred eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
++.+.+.+|.+.|.+++++ +.++++|+.|++++|||+.++. +..+++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----Lkltlt-------------------------- 190 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----LKLTLT-------------------------- 190 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----EEEeec--------------------------
Confidence 3455668999999999998 7899999999999999999987 333332
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCc
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~ 200 (353)
+|...|..+++++ .++++++.|+.|+.||++..+.++.+.+|-..|.|++..| +.+++|+.|.++++||+++..
T Consensus 191 -Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~- 268 (460)
T KOG0285|consen 191 -GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA- 268 (460)
T ss_pred -chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-
Confidence 8999999999999 8999999999999999999999999999999999999964 599999999999999999987
Q ss_pred ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecC
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSA 278 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 278 (353)
....+.+|...+ .++.+.|-...+++|+.|++|++||+..+ +....+..|...+.+++.+ ...+|+++.
T Consensus 269 ----~V~~l~GH~~~V-~~V~~~~~dpqvit~S~D~tvrlWDl~ag----kt~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 269 ----SVHVLSGHTNPV-ASVMCQPTDPQVITGSHDSTVRLWDLRAG----KTMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred ----eEEEecCCCCcc-eeEEeecCCCceEEecCCceEEEeeeccC----ceeEeeecccceeeEEecCCchhhhhccCC
Confidence 788999999887 99999998889999999999999999999 6667778888888887766 556777777
Q ss_pred CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
|. |+-|++..+. .+..+.+|+.-|++++...| .++++|+++|.+.+||.+++-..+..
T Consensus 340 dn-ik~w~~p~g~---f~~nlsgh~~iintl~~nsD-----~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 340 DN-IKQWKLPEGE---FLQNLSGHNAIINTLSVNSD-----GVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred cc-ceeccCCccc---hhhccccccceeeeeeeccC-----ceEEEcCCceEEEEEecCcCcccccc
Confidence 65 9999999887 67779999999999999886 58999999999999999988766654
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-37 Score=233.25 Aligned_cols=274 Identities=25% Similarity=0.374 Sum_probs=231.1
Q ss_pred cEEEEEeCCCcEEEEeC--CCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591 27 EFILSASQGKDIIVWQQ--PDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 27 ~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
+-++.|.-.+..+..+. ....+...+.+|..+|+.+.|. -..+++++.|++|++||..+++ +...+
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----~e~~L----- 146 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----LERSL----- 146 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----hhhhh-----
Confidence 44555544444444331 2223455667789999999998 4467788899999999999987 33332
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE--e
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA--S 177 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~--~ 177 (353)
.+|...+..+.|+. .++++++.|-.+++||..+ .++++.+.+|...|.++.+ .
T Consensus 147 ----------------------rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 147 ----------------------RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL 204 (406)
T ss_pred ----------------------hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence 38999999999998 8999999999999999987 6788888899999999999 4
Q ss_pred CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591 178 KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 178 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 257 (353)
++++++++.|.+|+.|++.++. +...+.+|...+ ..+..+.||..+++++.|.++++|-+.+. .+...+.
T Consensus 205 gd~ilS~srD~tik~We~~tg~-----cv~t~~~h~ewv-r~v~v~~DGti~As~s~dqtl~vW~~~t~----~~k~~lR 274 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTGY-----CVKTFPGHSEWV-RMVRVNQDGTIIASCSNDQTLRVWVVATK----QCKAELR 274 (406)
T ss_pred CCeeeecccccceeEEecccce-----eEEeccCchHhE-EEEEecCCeeEEEecCCCceEEEEEeccc----hhhhhhh
Confidence 5699999999999999999998 899999999976 99999999999999999999999999987 4556667
Q ss_pred ccceeEEEEEEc-----------------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591 258 AHEMAVLCVCLV-----------------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF 320 (353)
Q Consensus 258 ~~~~~v~~~~~~-----------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 320 (353)
.|+-++-|++|- +.++.+++.|++|++||+.++. ++.++.+|...|..++|+|. |+
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~----Gk 347 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPG----GK 347 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe---EEEEEecccceeeeeEEcCC----Ce
Confidence 777766666541 2599999999999999999987 89999999999999999999 99
Q ss_pred EEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591 321 LLYSGSLDKSLRVWWVSKQSSTSDSEEKS 349 (353)
Q Consensus 321 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 349 (353)
||+++.+|+++++||+++.+++...+..+
T Consensus 348 yi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 348 YILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred EEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 99999999999999999999999887543
No 41
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-36 Score=218.02 Aligned_cols=272 Identities=20% Similarity=0.272 Sum_probs=224.5
Q ss_pred EEEEEC---CcEEEEEe-------CCCcEEEEeCCCceeeEEecc--CceeeEEEEEe---CCEEEEecCCCcEEEEEcc
Q 018591 20 SSLALC---GEFILSAS-------QGKDIIVWQQPDLRMFTKFGH--GDGSVKAVVTV---GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 20 ~~~~~~---~~~l~s~~-------~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~ 84 (353)
+++.|+ .++||.+. ..|++.|-++...+-+..+.. -...+..++|+ .+.+++++.||.+++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 567776 44554443 358999999865554444322 25688999998 6789999999999999954
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCL 161 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~ 161 (353)
... .+...+.+|..+|.++.|++ ..+++++.|++|++|+...++.+
T Consensus 92 ~~s-------------------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 92 MPS-------------------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred CCC-------------------------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 433 23455668999999999998 77888899999999999999999
Q ss_pred eeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCc
Q 018591 162 ESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGF 237 (353)
Q Consensus 162 ~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 237 (353)
.++.+|...|....| .++.+++++.|+++++||++... ....++.|...+ .++.|+. +...+++|+.|+.
T Consensus 141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-----k~~~i~ah~~Ei-l~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 141 QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-----KFMSIEAHNSEI-LCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-----ceeEEEecccee-EeecccccCCcEEEecCCCce
Confidence 999999999999999 45699999999999999998765 344578888655 9999987 5678999999999
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
|+.||++.-+ .+..++.+|...|..+.++ ...|++++.|-+++|||...+.. .+.+...|+..+..+.|++-
T Consensus 215 vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds--~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 215 VRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS--AIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred EEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh--hhhhhhccceEEeccccccc
Confidence 9999999864 5577789999999999887 56899999999999999986543 55667789999999999987
Q ss_pred CCCCCeEEEEccCCCeEEEEEc
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
. ..++|+.+.|+.++||+-
T Consensus 290 ~---~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 290 D---PGQVASTGWDELLYVWNP 308 (311)
T ss_pred c---Cceeeecccccceeeecc
Confidence 3 679999999999999973
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.2e-36 Score=251.35 Aligned_cols=245 Identities=24% Similarity=0.406 Sum_probs=219.1
Q ss_pred CCCceeee-eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEE
Q 018591 4 KSHRSLAV-LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRV 80 (353)
Q Consensus 4 ~~~~~~~~-l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~ 80 (353)
.+++.+.. +.||.+.|+++++. +++|++|+.|.++++||..+|++...+.+|...|.++...+..+++|+.|.+|++
T Consensus 236 ~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 236 NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKV 315 (537)
T ss_pred ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEE
Confidence 45666777 99999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCcee
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
|+++++. .+ .++.+|.++|.++..+.+++++|+.|++|++||+.++++
T Consensus 316 W~v~n~~-----~l---------------------------~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 316 WDVTNGA-----CL---------------------------NLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred EeccCcc-----eE---------------------------EEeccccccEEEEEecCCEEEEEecCceEEEEEhhhcee
Confidence 9999776 33 233369999999999999999999999999999999999
Q ss_pred eeeccccCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCC-CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591 161 LESIKAHDDAVNGLVASK-GIVYSASADGKIKAWGKELG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV 238 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 238 (353)
+..+.+|...|+++.+.+ +.+++|+.|++|++||+++. + +...+.+|...+ ..+.+ .+++|++++.|++|
T Consensus 364 l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~-----c~~tl~~h~~~v-~~l~~--~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRK-----CIHTLQGHTSLV-SSLLL--RDNFLVSSSADGTI 435 (537)
T ss_pred eeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhh-----hhhhhcCCcccc-ccccc--ccceeEeccccccE
Confidence 999999999999999977 89999999999999999998 5 888888888755 44444 46799999999999
Q ss_pred EEeeccccccceeeeeeccc-cceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591 239 MGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
++||...+ .....+.+ |...+.++......+++++.||.+++||+++++.
T Consensus 436 k~WD~~~~----~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 436 KLWDAEEG----ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEeecccC----ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 99999998 55555555 6688888888778899999999999999999873
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-34 Score=228.14 Aligned_cols=293 Identities=19% Similarity=0.267 Sum_probs=240.7
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCC-
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQD- 75 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~d- 75 (353)
+.....+..+..|..+++-..|+ |.|+|+|...|+|||||....+ +..+++.-.++|..|.|+ +.++++.++.
T Consensus 46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr 125 (603)
T KOG0318|consen 46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR 125 (603)
T ss_pred CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence 34455567788999999999996 8899999999999999976533 334566678999999998 6777776543
Q ss_pred ---CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCc
Q 018591 76 ---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKT 149 (353)
Q Consensus 76 ---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~ 149 (353)
|.+.+||.-+. ...+.+|...|++++|-| -++++|+.|+.
T Consensus 126 erfg~~F~~DSG~S----------------------------------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~ 171 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNS----------------------------------VGEITGHSRRINSVDFKPSRPFRIATGSDDNT 171 (603)
T ss_pred cceeEEEEecCCCc----------------------------------cceeeccceeEeeeeccCCCceEEEeccCCCe
Confidence 35666765332 223348999999999988 68999999999
Q ss_pred EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeee---ccCCceeeEEEEcC
Q 018591 150 LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILE---GHKDVSLNSVVVSD 224 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 224 (353)
|.+|+-.-.+...+++.|..-|+++.|+|+ ++++++.||++.+||-.+++ ....+. +|.+.+ .+++|+|
T Consensus 172 v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge-----~vg~l~~~~aHkGsI-falsWsP 245 (603)
T KOG0318|consen 172 VAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-----KVGELEDSDAHKGSI-FALSWSP 245 (603)
T ss_pred EEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc-----EEEEecCCCCccccE-EEEEECC
Confidence 999998888888899999999999999444 99999999999999999998 566666 788877 9999999
Q ss_pred CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCc
Q 018591 225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304 (353)
Q Consensus 225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~ 304 (353)
|++.+++++.|.+++|||+.+.....+........... ..+-|....|++.+.+|.|.+++..... .+..+.||..
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq-vG~lWqkd~lItVSl~G~in~ln~~d~~---~~~~i~GHnK 321 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ-VGCLWQKDHLITVSLSGTINYLNPSDPS---VLKVISGHNK 321 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceE-EEEEEeCCeEEEEEcCcEEEEecccCCC---hhheeccccc
Confidence 99999999999999999999984443333332222333 3444558899999999999999999887 6777899999
Q ss_pred CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
.|+++..+|+ +++|++|+.||.|.-|+..++..-.
T Consensus 322 ~ITaLtv~~d----~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 322 SITALTVSPD----GKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred ceeEEEEcCC----CCEEEeeccCceEEEEecCCccccc
Confidence 9999999999 9999999999999999999876553
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-35 Score=211.20 Aligned_cols=251 Identities=21% Similarity=0.287 Sum_probs=213.1
Q ss_pred eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591 48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
....+..+.++|.++.|+ |++.++++.|.+|++|+...+. ++ +.+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----li---------------------------ktYs 56 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----LI---------------------------KTYS 56 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----ee---------------------------eeec
Confidence 445678899999999998 9999999999999999988776 33 3344
Q ss_pred ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcc
Q 018591 126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSH 201 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~ 201 (353)
+|..+|..++.+. ..+++|+.|..+.+||+++++.++.+.+|.+.|+.+.|++. .+++|+.|.++++||.+....
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~- 135 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF- 135 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-
Confidence 8999999888765 89999999999999999999999999999999999999444 899999999999999998763
Q ss_pred cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591 202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKS 281 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 281 (353)
.+.+.+....+.+ .++... +..+++|+.||+++.||++.+ .......+|+....+++.+++..++++.|++
T Consensus 136 --ePiQildea~D~V-~Si~v~--~heIvaGS~DGtvRtydiR~G----~l~sDy~g~pit~vs~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 136 --EPIQILDEAKDGV-SSIDVA--EHEIVAGSVDGTVRTYDIRKG----TLSSDYFGHPITSVSFSKDGNCSLASSLDST 206 (307)
T ss_pred --CccchhhhhcCce-eEEEec--ccEEEeeccCCcEEEEEeecc----eeehhhcCCcceeEEecCCCCEEEEeeccce
Confidence 3555666666655 777766 668999999999999999998 6666677788778888888999999999999
Q ss_pred EEEEecCCCcceEEeccccCCCcCeEEE--EeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 282 IGIWKREAFGKLCRVGAITGHEGPVKCL--QASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
+++.|-.+++ .+..++||...=..+ +++.. ...+++|++||.|.+||+.+...+...+.
T Consensus 207 lrLlDk~tGk---lL~sYkGhkn~eykldc~l~qs----dthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 207 LRLLDKETGK---LLKSYKGHKNMEYKLDCCLNQS----DTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eeecccchhH---HHHHhcccccceeeeeeeeccc----ceeEEeccCCceEEEEEeccceeeeeecc
Confidence 9999999998 788899998765444 44554 68999999999999999999887776553
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=236.47 Aligned_cols=238 Identities=24% Similarity=0.397 Sum_probs=205.8
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
.++.|..+|+++.|+ +.+++||+.+|.|++|+..-........+|...|.+++|+ ...+++++.||+|+|||....
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 356899999999995 9999999999999999975444444445566999999998 788999999999999998776
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
.+ .+++.+|.-.|.+++|+| .++++|+.|..|++||.++++++.++
T Consensus 213 ke--------------------------------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 213 KE--------------------------------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred ch--------------------------------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence 52 333459999999999999 89999999999999999999999999
Q ss_pred cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEe
Q 018591 165 KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGW 241 (353)
Q Consensus 165 ~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~ 241 (353)
..|...|..+.| +.++|++++.|..++++|+++.+ .+..+++|...+ ++++|+| ...+|.+|+.||.|..|
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-----El~~~r~Hkkdv-~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-----ELFTYRGHKKDV-TSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----HHHHhhcchhhh-eeeccccccccceeeccCCCceEEE
Confidence 999999999999 44599999999999999999766 677889999887 9999999 46788999999999999
Q ss_pred eccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591 242 EGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~ 289 (353)
.+.... .+.....+|...|.+++++ |.+|++|+.|.++++|....
T Consensus 335 ~v~~~~---p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 335 VVGLEE---PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eccccc---cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 998442 2333456789999999987 99999999999999998653
No 46
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.4e-37 Score=229.93 Aligned_cols=282 Identities=18% Similarity=0.214 Sum_probs=228.2
Q ss_pred eeeeeeCccCceEEEEECC---cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591 8 SLAVLSGHVGSVSSLALCG---EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 84 (353)
.+..|.||.+.|.|++-+. ..+++|+.||.|++||+...+++..+..|.+.|..|+++.+.+++++.|.+|+.|.++
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence 3567899999999999973 4799999999999999999999999999999999999998999999999999999987
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
... +.++ .-...+..+.-+. +.+++++. .|.|||.....++.
T Consensus 138 ~~p------~~ti----------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 138 GPP------LHTI----------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVS 181 (433)
T ss_pred CCc------ceee----------------------------eccccccccccccccccccccCc--eeeecccccCCccc
Confidence 631 1111 1223445555544 67777775 59999999889999
Q ss_pred eccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 163 SIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 163 ~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
.+.--...|.++.|++. .|++++.|+.|.+||+++.. ++........ . +.++|+|++-.++++++|..++
T Consensus 182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~-----Pl~KVi~~mR-T-N~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS-----PLKKVILTMR-T-NTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC-----ccceeeeecc-c-cceecCccccceeeccccccce
Confidence 99877888999999554 88899999999999999987 3332222111 2 7899999888899999999999
Q ss_pred EeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (353)
.||++.-. .+.....+|...++.+.++ |+-+++|+.|.+|+||..+.+..-....+ .--..|.++.||.|
T Consensus 255 ~~DmR~l~---~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~D--- 326 (433)
T KOG0268|consen 255 TYDMRNLS---RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMD--- 326 (433)
T ss_pred ehhhhhhc---ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecc---
Confidence 99998763 5666778899999999887 99999999999999999987653211111 11246999999999
Q ss_pred CCeEEEEccCCCeEEEEEcCCCCC
Q 018591 318 GGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 318 ~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
.+++++||+|+.|++|...-.+.
T Consensus 327 -skyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 327 -SKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred -ccEEEecCCCcceeeeecchhhh
Confidence 99999999999999998765443
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7e-35 Score=210.68 Aligned_cols=281 Identities=17% Similarity=0.254 Sum_probs=220.5
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
.|+||..+++.+.|+ |++|++++.|.+..||-..+|+.+.++.+|++.|+++..+ ...+++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 688999999999997 9999999999999999988999999999999999999887 889999999999999999999
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-----CCCcEEEEEcC---
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-----WDKTLKVWRVA--- 156 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-----~dg~v~iwd~~--- 156 (353)
+ .+..+ ....+|..+.|+. ++++... ..+.|.++|++
T Consensus 85 k-----~la~~----------------------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 85 K-----QLATW----------------------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred c-----EEEEe----------------------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 8 33333 3556888899988 4444432 34679999998
Q ss_pred ----CceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 157 ----DLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 157 ----~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
..++...+..+...++.+.| .+..+++|..||.|.+||.+++. ......+.|...+ +.+.++|+..+++
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----~~v~s~~~h~~~I-nd~q~s~d~T~Fi 206 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----ELVDSDEEHSSKI-NDLQFSRDRTYFI 206 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc----eeeechhhhcccc-ccccccCCcceEE
Confidence 45567777788899999999 45599999999999999999986 2555666777755 9999999999999
Q ss_pred eecCCCcEEEeeccccccceeeeeeccccceeEE--EEEEcCcEEEEecCCCeEEE--EecCCCc---------ceEEec
Q 018591 231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--CVCLVGEFLCSGSADKSIGI--WKREAFG---------KLCRVG 297 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~i~i--w~~~~~~---------~~~~~~ 297 (353)
+++.|.+-++||..+-.. ..++. ...++. ++.|..++++.|+.....-+ =+.+.++ ..+.+.
T Consensus 207 T~s~Dttakl~D~~tl~v----~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEV----LKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred ecccCccceeeeccceee----EEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 999999999999998732 22222 123333 44454555655554322211 1222221 012566
Q ss_pred cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
..++|-++|++++|+|+ |+..++|++||.|++.-++.
T Consensus 282 rvkGHFGPINsvAfhPd----GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPD----GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccccCcceeEECCC----CcccccCCCCceEEEEEecc
Confidence 67899999999999999 99999999999999986654
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-34 Score=210.40 Aligned_cols=293 Identities=19% Similarity=0.309 Sum_probs=227.0
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC--CCc
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ--DSR 77 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~ 77 (353)
++.++.+.|+.-.+.|+++.|+ |.+|++++.|.++++||..+++.++++..+.-.+..++|. .+.++.++. |.+
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 4567778888888999999996 9999999999999999999999999998888888888886 666666665 889
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
||.-++.+.+ . .+.+.||...|++++.+| +.+++++.|++|++||+
T Consensus 82 IryLsl~dNk-----y---------------------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 82 IRYLSLHDNK-----Y---------------------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL 129 (311)
T ss_pred eEEEEeecCc-----e---------------------------EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEe
Confidence 9999998876 3 455559999999999999 99999999999999999
Q ss_pred CCceeeeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591 156 ADLKCLESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
+..++...+.....++ +++ +.+ .+|++.....|++||++.-...+............. .+.+.|+|||++++.+.
T Consensus 130 R~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e-w~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 130 RVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE-WTDLEFSPDGKSILLST 206 (311)
T ss_pred cCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc-eeeeEEcCCCCEEEEEe
Confidence 9888887775544444 555 344 666666666999999997653333332222222333 48999999999999999
Q ss_pred CCCcEEEeeccccccceeeeeecccccee-EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC-CCcCeEEEEe
Q 018591 234 SDGFVMGWEGNVEIVRWKLACETKAHEMA-VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQA 311 (353)
Q Consensus 234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~ 311 (353)
..+.+++.|.-.+.....+.........+ -.++.|+++++++|+.||+|.+|+++++. .+..+.+ +.+++.++.|
T Consensus 207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~---~v~~~~~~~~~~~~~~~f 283 (311)
T KOG1446|consen 207 NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK---KVAVLRGPNGGPVSCVRF 283 (311)
T ss_pred CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc---EeeEecCCCCCCcccccc
Confidence 99999999998885333322222222222 35567899999999999999999999988 5666666 7899999999
Q ss_pred ecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.|. -.+++++ +..+.+|=....+
T Consensus 284 nP~----~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 284 NPR----YAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred CCc----eeeeeec--CceEEEEeccccc
Confidence 998 4455554 5568888655443
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-35 Score=245.97 Aligned_cols=288 Identities=22% Similarity=0.328 Sum_probs=243.9
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
.|..-+..|..++|+ ...++++-..|.|++||..-+.++..|..|.++|..+.|. ...+++|+.|-.|++|+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 455567889999997 6699999999999999999999999999999999999998 778999999999999999877
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
+ ++.++ .+|-..|..+.|++ ..+++++.|.+|+||+..+++++..+
T Consensus 84 r-----clftL---------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 84 R-----CLFTL---------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred e-----ehhhh---------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 6 43333 38999999999999 89999999999999999999999999
Q ss_pred cccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcc------------------------cccceeeeeccCCceee
Q 018591 165 KAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSH------------------------CHSLKGILEGHKDVSLN 218 (353)
Q Consensus 165 ~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~~~~~~~~~~~v~ 218 (353)
.+|...|.|..|. .+.++++|.|.+||+||+...+.. .......+++|...+ +
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV-N 210 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV-N 210 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc-c
Confidence 9999999999994 469999999999999998543311 112345677888877 9
Q ss_pred EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC--cEEEEecCCCeEEEEecCCCcceEEe
Q 018591 219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG--EFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
.++|+|.-..+++|+.|..|++|.....+ .| ...+..+|...|.++-+++ +++++.+.|++|++||+...+ .+
T Consensus 211 waAfhpTlpliVSG~DDRqVKlWrmnetK-aW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---~v 285 (1202)
T KOG0292|consen 211 WAAFHPTLPLIVSGADDRQVKLWRMNETK-AW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---SV 285 (1202)
T ss_pred eEEecCCcceEEecCCcceeeEEEecccc-ce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---ce
Confidence 99999999999999999999999987652 22 3456789999999998875 899999999999999998766 66
Q ss_pred ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
..++...+..+.++-+|. .++++.| .|+-+.||.++...+
T Consensus 286 ~tfrrendRFW~laahP~----lNLfAAg-HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHPE----LNLFAAG-HDSGMIVFKLERERP 325 (1202)
T ss_pred eeeeccCCeEEEEEecCC----cceeeee-cCCceEEEEEcccCc
Confidence 677777788999999998 7776666 555577888774433
No 50
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-35 Score=219.08 Aligned_cols=322 Identities=17% Similarity=0.228 Sum_probs=244.1
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
.++++.|.||.+.|+.++.+ ...+.+++.|.+.+||.++++.++..+.+|.+.|+++.|. +.++++++.|++..||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 35677889999999999996 5689999999999999999999999999999999999998 7889999999999999
Q ss_pred EcccCcccee----EEe---eccccccceeeeecccce--eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcE
Q 018591 82 KVSRSSENVF----RLV---DTLPTTKDYLGKFMKQSN--YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTL 150 (353)
Q Consensus 82 ~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v 150 (353)
...-.-+.+. .-. ....... .......... .....+.+...+.+|.+.|.+..|.. +.+++++.|.+.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sD-e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSD-EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhccc-ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 8321110000 000 0000000 0000000000 01122334556779999999999987 899999999999
Q ss_pred EEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 151 KVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
.+||+++++.+..+.+|....+.++-.+. ++++.+.|.+.++||++..- .....+++|.+.+ +++.|..+. .
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI----~sV~VFQGHtdtV-TS~vF~~dd-~ 370 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI----QSVAVFQGHTDTV-TSVVFNTDD-R 370 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc----ceeeeecccccce-eEEEEecCC-c
Confidence 99999999999999999999999888444 78899999999999999543 3567899999987 999998775 5
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEe-ccccCCCcC
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRV-GAITGHEGP 305 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~h~~~ 305 (353)
+++|+.|.+|++||+++..... ..+. ...++..++. .+..++.--.+..|++||++........ ..-++|...
T Consensus 371 vVSgSDDrTvKvWdLrNMRspl---ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPL---ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM 446 (481)
T ss_pred eeecCCCceEEEeeeccccCcc---eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence 8899999999999999864222 2221 2334444444 4668888888999999999865432221 145689999
Q ss_pred eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
|+|.+|..+.+ -.-|++++.|..+.-|++..+.
T Consensus 447 V~c~AW~eehp--~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 447 VTCCAWLEEHP--ACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeeccccCc--ccccccccccceeeeeEecccC
Confidence 99999998755 4678999999999999998765
No 51
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-34 Score=207.18 Aligned_cols=276 Identities=21% Similarity=0.241 Sum_probs=228.5
Q ss_pred eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEE--eccCceeeEEEEEe---CCEEEEecCCCcEEEEE
Q 018591 10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~ 82 (353)
+.+++|...|.+|+|+ |..|++|+.|+++++|+++..+.... ..+|.+.|..++|+ ++.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999996 99999999999999999987765544 46788999999997 78999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
++.++ +.... .....=.-+.|+| +++++++.|..|.+.|.++.+.
T Consensus 94 ~r~~k-----~~~~i----------------------------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 94 IRSGK-----CTARI----------------------------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred eccCc-----EEEEe----------------------------eccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence 99876 32222 2222333567887 8999999999999999999888
Q ss_pred eeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591 161 LESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV 238 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 238 (353)
....+. ...+..++| ++++++.....|.|.|......+ +...++.|.... .++.|+|+|++|++|+.|..+
T Consensus 141 ~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-----pv~si~AH~snC-icI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 141 VNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-----PVQSIKAHPSNC-ICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred eehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc-----cccccccCCcce-EEEEECCCCceEeecccccee
Confidence 777653 567778888 55577777778999999888776 788899999776 899999999999999999999
Q ss_pred EEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591 239 MGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
.+||+..- .+...+..+.-+|..++|+ |++||+|+.|..|-|=++++|.+...+ .++++...++|+|.
T Consensus 214 SLWD~~EL----iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----~~~~~t~tVAWHPk-- 283 (313)
T KOG1407|consen 214 SLWDVDEL----ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----PCEGPTFTVAWHPK-- 283 (313)
T ss_pred eccChhHh----hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----eccCCceeEEecCC--
Confidence 99999876 5566667778888887775 999999999999999999999954443 37889999999999
Q ss_pred CCCeEEEEccCC---------CeEEEEEcC
Q 018591 317 GGGFLLYSGSLD---------KSLRVWWVS 337 (353)
Q Consensus 317 ~~~~~l~s~~~d---------g~i~iw~~~ 337 (353)
..+||-++.| |.+++|-++
T Consensus 284 --~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 284 --RPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred --CceeeEEecCCCCccccccceeEEecCC
Confidence 7888887764 567777654
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-35 Score=237.11 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=217.5
Q ss_pred EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
+++..++..|.++.+. ...++++-.+|.|.+|+.++.. .+..+. -.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-----mVksfe---------------------------V~ 54 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-----MVKSFE---------------------------VS 54 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-----eeeeee---------------------------ec
Confidence 3455678899999998 6788999999999999999876 333332 34
Q ss_pred CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591 128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
..+|.+..|-+ +.+++|+.|..|++|+.++++.+..|++|...|.+++.+|. ++++++.|-+|++||.+..=
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---- 130 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---- 130 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce----
Confidence 45777788877 89999999999999999999999999999999999999665 99999999999999998764
Q ss_pred cceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc----CcEEEEecC
Q 018591 204 SLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV----GEFLCSGSA 278 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~ 278 (353)
.+.+.+++|...+ ..++|.| |.+.+++++-|++|++|.+.+. .+..++.+|...|.|+.+- ..+|++|+.
T Consensus 131 a~~qtfeGH~HyV-Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 131 ACEQTFEGHEHYV-MQVAFNPKDPNTFASASLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred eeeeEEcCcceEE-EEEEecCCCccceeeeeccccEEEEEcCCC----CCceeeeccccCcceEEeccCCCcceEEecCC
Confidence 5788999999987 9999999 5689999999999999999988 6777888999999999984 349999999
Q ss_pred CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
|.+++|||.++.. +++++.||...|..+.|+|. -.+++|||+||++|||+-.+.+...+
T Consensus 206 D~tiKvWDyQtk~---CV~TLeGHt~Nvs~v~fhp~----lpiiisgsEDGTvriWhs~Ty~lE~t 264 (794)
T KOG0276|consen 206 DLTIKVWDYQTKS---CVQTLEGHTNNVSFVFFHPE----LPIIISGSEDGTVRIWNSKTYKLEKT 264 (794)
T ss_pred CceEEEeecchHH---HHHHhhcccccceEEEecCC----CcEEEEecCCccEEEecCcceehhhh
Confidence 9999999999877 99999999999999999999 78999999999999999887765544
No 53
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-34 Score=210.13 Aligned_cols=262 Identities=21% Similarity=0.327 Sum_probs=209.8
Q ss_pred EEEEEeCCCcEEEEeCCCc------------eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591 28 FILSASQGKDIIVWQQPDL------------RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVD 95 (353)
Q Consensus 28 ~l~s~~~dg~v~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 95 (353)
.+++|+....|.-+++... .++..+..|.++|++++.++.++++|+.|-+|++||+....+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q------- 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ------- 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhh-------
Confidence 3677888777777764321 224556889999999999999999999999999999987652
Q ss_pred ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591 96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171 (353)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 171 (353)
...+..|.+.|+++.|.+ +.|++|+.||.|.+|+....+++..+++|.+.|
T Consensus 76 -------------------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V 130 (362)
T KOG0294|consen 76 -------------------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV 130 (362)
T ss_pred -------------------------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence 222337999999999998 489999999999999999999999999999999
Q ss_pred EEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591 172 NGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR 249 (353)
Q Consensus 172 ~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 249 (353)
+.++++|. +.++.+.|+.++.||+-.++ ......-... . +.+.|+|.|.+++.+..++ |-+|.+...
T Consensus 131 t~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-----~a~v~~L~~~-a-t~v~w~~~Gd~F~v~~~~~-i~i~q~d~A--- 199 (362)
T KOG0294|consen 131 TDLSIHPSGKLALSVGGDQVLRTWNLVRGR-----VAFVLNLKNK-A-TLVSWSPQGDHFVVSGRNK-IDIYQLDNA--- 199 (362)
T ss_pred ceeEecCCCceEEEEcCCceeeeehhhcCc-----cceeeccCCc-c-eeeEEcCCCCEEEEEeccE-EEEEecccH---
Confidence 99999443 77788999999999998887 2333332222 2 5699999999999888775 899998876
Q ss_pred eeeeeeccccceeEEEEEE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 250 WKLACETKAHEMAVLCVCL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
........ +..+.|+.| ++..|++|+.|+.|.+||.++.. ++..+.+|+.+|.++.+-.+.. +.+|+|+|.|
T Consensus 200 -~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~--~~~lvTaSSD 272 (362)
T KOG0294|consen 200 -SVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPE--HEYLVTASSD 272 (362)
T ss_pred -hHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCC--ceEEEEeccC
Confidence 22222222 245677777 48899999999999999998865 7778899999999998543311 8899999999
Q ss_pred CeEEEEEcCCC
Q 018591 329 KSLRVWWVSKQ 339 (353)
Q Consensus 329 g~i~iw~~~~~ 339 (353)
|.|+|||++..
T Consensus 273 G~I~vWd~~~~ 283 (362)
T KOG0294|consen 273 GFIKVWDIDME 283 (362)
T ss_pred ceEEEEEcccc
Confidence 99999999876
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.5e-36 Score=228.78 Aligned_cols=283 Identities=20% Similarity=0.313 Sum_probs=232.9
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
....+..|.+.|..+.|- ...|++|+.|..|++|+....+ .+.++.+..+.|+++.|+ +.++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345788899999999993 5899999999999999976655 677888888999999998 7889999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
+++... ...++ .+|++.|+++.|.. ..+++|+.|.+|++||+....
T Consensus 247 nvd~~r-----~~~TL---------------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 247 NVDSLR-----LRHTL---------------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred eccchh-----hhhhh---------------------------cccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 998876 33333 38999999999987 449999999999999999999
Q ss_pred eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 160 CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
|.+++.. ...+..|...+..+++|..|++|++||.+... +......+. .|+++..++++..+.+++.|.++.
T Consensus 295 C~kt~l~-~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~-----~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 295 CSKTVLP-GSQCNDIVCSISDVISGHFDKKVRFWDIRSAD-----KTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred eeccccc-cccccceEecceeeeecccccceEEEeccCCc-----eeeEeecCc--ceeeEeeccCCeEEeeecCCCcee
Confidence 9888743 56777888788899999999999999999887 566666655 369999999999999999999999
Q ss_pred Eeeccccccceee--eeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591 240 GWEGNVEIVRWKL--ACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 240 i~d~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (353)
+.|+++......+ .....++.-.-..++|++.|+++|+.||.|+||++.+++....+. .......|++++|+|.
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~-~s~s~~aI~s~~W~~s--- 442 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS-LSTSNAAITSLSWNPS--- 442 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec-cCCCCcceEEEEEcCC---
Confidence 9999987322211 112234455567788889999999999999999999987433222 2222236999999999
Q ss_pred CCeEEEEccCCCeEEEEE
Q 018591 318 GGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 318 ~~~~l~s~~~dg~i~iw~ 335 (353)
|..|++++.++.+.+|.
T Consensus 443 -G~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 443 -GSGLLSADKQKAVTLWT 459 (459)
T ss_pred -CchhhcccCCcceEecC
Confidence 99999999999999993
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=199.67 Aligned_cols=247 Identities=18% Similarity=0.278 Sum_probs=209.8
Q ss_pred eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 47 RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
..++.+.+|.+.+..++|+ |..|++++.|..|++|+...+. .+.+...+..
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s~~ck~vld~------------------------ 58 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--SWTCKTVLDD------------------------ 58 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--cEEEEEeccc------------------------
Confidence 4567788999999999999 3389999999999999988532 2334433332
Q ss_pred eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC--CceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCC
Q 018591 124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA--DLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKEL 197 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~ 197 (353)
+|+..|.+++|+| ++|++|+.|.++.||.-. +.+++..+++|...|.+++| ++++|++++.|+.|-+|.+..
T Consensus 59 --~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 59 --GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE 136 (312)
T ss_pred --cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence 7999999999999 999999999999999754 35789999999999999999 556999999999999999885
Q ss_pred CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEE
Q 018591 198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCS 275 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 275 (353)
.. ...+...++.|...+ ..+.|+|...+|++++.|.+|++|.-.. ...+.+...+.+|...+.++.|+ |..|++
T Consensus 137 dd--Efec~aVL~~HtqDV-K~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 137 DD--EFECIAVLQEHTQDV-KHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred CC--cEEEEeeeccccccc-cEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 43 345778899999887 9999999999999999999999998875 45678899999999999999886 889999
Q ss_pred ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
++.|++++||...+.- -..|+.+++.+.|. + ..|++++.|+.|+++.-..
T Consensus 213 ~sdD~tv~Iw~~~~~~-------~~~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTDL-------SGMHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESD 262 (312)
T ss_pred ecCCcceEeeeeccCc-------chhcccceEeeeec-c-----cceEeccCCCEEEEEEecC
Confidence 9999999999966321 23478899999999 3 3899999999999998764
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-34 Score=237.84 Aligned_cols=276 Identities=19% Similarity=0.208 Sum_probs=198.8
Q ss_pred EEec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEe---------------ecccc------------
Q 018591 50 TKFG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLV---------------DTLPT------------ 99 (353)
Q Consensus 50 ~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~---------------~~~~~------------ 99 (353)
+.+. .|.+.|+++.|+ |.+||+||.||.|+||.+...+....... .....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3444 677777777776 77777777787778877755211000000 00000
Q ss_pred -ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-
Q 018591 100 -TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA- 176 (353)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~- 176 (353)
..........+.........+.+.+.||.+.|..+.|+. ++|++++.|.+|++|++...+|+..| .|...|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence 000000011112223344556778889999999999999 99999999999999999999999998 58999999999
Q ss_pred --eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeee
Q 018591 177 --SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLAC 254 (353)
Q Consensus 177 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 254 (353)
+++++++|+.||.+|||++...+ . ..+..-. ..|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~-----V-v~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKK-----V-VDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCe-----e-Eeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 44599999999999999998876 2 2222223 4469999999999999999999999999988744332222
Q ss_pred ecc----ccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCc--CeEEEEeecCCCCCCeEEEEc
Q 018591 255 ETK----AHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG--PVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 255 ~~~----~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~l~s~ 325 (353)
... .....|+.+.+. ...+++.+.|..|||||.++.+ .+..++|+.. .-....|+.| |++++++
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---lv~KfKG~~n~~SQ~~Asfs~D----gk~IVs~ 564 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---LVHKFKGFRNTSSQISASFSSD----GKHIVSA 564 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh---hhhhhcccccCCcceeeeEccC----CCEEEEe
Confidence 211 112278888775 4468888999999999997766 6667776543 3355678888 9999999
Q ss_pred cCCCeEEEEEcCCCC
Q 018591 326 SLDKSLRVWWVSKQS 340 (353)
Q Consensus 326 ~~dg~i~iw~~~~~~ 340 (353)
++|..|++|+.....
T Consensus 565 seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSFN 579 (712)
T ss_pred ecCceEEEEeCCCCc
Confidence 999999999986544
No 57
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=229.78 Aligned_cols=278 Identities=25% Similarity=0.381 Sum_probs=235.0
Q ss_pred eeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 10 AVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
..+.||+..|.+++++ .+.++..+..+.+++|+..+.++++++... .+.+..|- ++++++|...|.+.++|+...
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 4677999999999997 444444445679999999999999999764 66666665 789999999999999999876
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-----ce
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-----LK 159 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-----~~ 159 (353)
. ++.+.+ .|.+.|.+++..| ..+++|+.|.+|++||..- +.
T Consensus 445 ~-----l~Eti~---------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 445 S-----LVETIR---------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred h-----hhhhhh---------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 5 333332 7999999999999 8999999999999999742 11
Q ss_pred ee--------eeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591 160 CL--------ESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV 229 (353)
Q Consensus 160 ~~--------~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 229 (353)
.. +++ .-...|.|+.++|+ +++++-.|.++++|-+++.+ ....+.+|.-++ .++.++||++.+
T Consensus 493 ~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHkLPV-~smDIS~DSkli 565 (888)
T KOG0306|consen 493 QKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHKLPV-LSMDISPDSKLI 565 (888)
T ss_pred cceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-----eeeeecccccce-eEEeccCCcCeE
Confidence 11 112 13577899999544 88889999999999999987 788889998876 999999999999
Q ss_pred EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE
Q 018591 230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK 307 (353)
Q Consensus 230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~ 307 (353)
++|+.|..|++|-+.-+ .+...+.+|...|+++.+- ..++++++.|+.|+-||-...+ .+..+.+|...|+
T Consensus 566 vTgSADKnVKiWGLdFG----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe---~iq~L~~H~~ev~ 638 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFG----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE---EIQKLDGHHSEVW 638 (888)
T ss_pred EeccCCCceEEeccccc----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh---hheeeccchheee
Confidence 99999999999999988 6777888999999998875 5689999999999999987665 8888999999999
Q ss_pred EEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 308 ~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+++.+|+ |.+++++|.|.+|++|.-...
T Consensus 639 cLav~~~----G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 639 CLAVSPN----GSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eeEEcCC----CCeEEeccCCceeEeeeccCc
Confidence 9999999 999999999999999987663
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.1e-34 Score=215.09 Aligned_cols=271 Identities=23% Similarity=0.328 Sum_probs=217.5
Q ss_pred CCCceeeeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCCceee----EEeccCceeeEEEEEe--CCEEEEe
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPDLRMF----TKFGHGDGSVKAVVTV--GNKVFTA 72 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~--~~~l~s~ 72 (353)
..|+..+++.||+++|.++++- ...|++|+.|.++++|.++.++.. ..-.+|...|.++... +..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 4688999999999999999982 346999999999999998876543 3335899999999976 8999999
Q ss_pred cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEE
Q 018591 73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLK 151 (353)
Q Consensus 73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~ 151 (353)
+.|.+|++|+.+............-+ +-..........+.+...+.+|..+|.++.|.+ ..+++++.|.+|+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~r-------rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk 284 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRR-------RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIK 284 (423)
T ss_pred cccceeeecccCCCccccccccchhh-------hhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEE
Confidence 99999999995444322222111100 000001122234456677789999999999999 9999999999999
Q ss_pred EEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-Ce
Q 018591 152 VWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KW 228 (353)
Q Consensus 152 iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 228 (353)
.||+.++..+.++.. ...++++...+ .++++|+.|..+++||.+++. .......+.+|...+ .++.|+|.. ..
T Consensus 285 ~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~--gs~v~~s~~gH~nwV-ssvkwsp~~~~~ 360 (423)
T KOG0313|consen 285 VWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD--GSVVSQSLIGHKNWV-SSVKWSPTNEFQ 360 (423)
T ss_pred EEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCC--CceeEEeeecchhhh-hheecCCCCceE
Confidence 999999999888865 67889999833 499999999999999999875 334667889999976 999999964 56
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecC
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~ 288 (353)
|++++.|+++++||+++.. .+...+.+|...+.++.|+ +..+++|+.|++|+|+.-.
T Consensus 361 ~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 361 LVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 8899999999999999873 3677888999999999998 6699999999999999754
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=217.48 Aligned_cols=279 Identities=21% Similarity=0.299 Sum_probs=230.0
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec--------cCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG--------HGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
|....+-|..|+ |++|++|+.||-|.+||..+|+..+.++ -+..+|.|+.|+ ...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445677888886 9999999999999999999998766543 357899999998 6789999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
.++++. ++..+.. .|+..|+|+.|+. ..+++++.|.++++.-+.+|+
T Consensus 291 ri~tG~-----ClRrFdr--------------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 291 RIETGQ-----CLRRFDR--------------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred EEecch-----HHHHhhh--------------------------hhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence 999987 4444432 7999999999998 899999999999999999999
Q ss_pred eeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcC-CCCeEEeecCC
Q 018591 160 CLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSD-DGKWVYGGGSD 235 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d 235 (353)
+++.+++|...|+...| .+..+++++.||+|++|+.++.+ +...++. ..+.+|+++..-| +...++++...
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence 99999999999999999 33499999999999999999887 5554443 3455567777766 55788899999
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA 315 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 315 (353)
+++.+-++..............+......+++|.|.++.+.+.|+.++-|...+++ .-..+.-|+..|..++-+|.
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~---LE~tl~VhEkdvIGl~HHPH- 490 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK---LERTLPVHEKDVIGLTHHPH- 490 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc---eeeeeecccccccccccCcc-
Confidence 99999998765221111112223333445667789999999999999999999988 55667789999999999999
Q ss_pred CCCCeEEEEccCCCeEEEEE
Q 018591 316 VGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 316 ~~~~~~l~s~~~dg~i~iw~ 335 (353)
.+.|++-++||.+++|.
T Consensus 491 ---qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 491 ---QNLLASYSEDGLLKLWK 507 (508)
T ss_pred ---cchhhhhcccchhhhcC
Confidence 89999999999999995
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.9e-34 Score=208.49 Aligned_cols=251 Identities=24% Similarity=0.328 Sum_probs=210.3
Q ss_pred eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591 48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
++..+.+|.+.|+.+.|+ |..|++|+.|..|.+|++....+.. -.+.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------------------------------~~lk 87 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-------------------------------WVLK 87 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-------------------------------eeec
Confidence 344568999999999998 8999999999999999987655322 2223
Q ss_pred ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCc
Q 018591 126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~ 200 (353)
+|+++|..+.|.. +.+++++.|.+|+.||.+++++++.+++|..-|+++.. .+.++.+++.|+++++||++...
T Consensus 88 gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~- 166 (338)
T KOG0265|consen 88 GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE- 166 (338)
T ss_pred cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-
Confidence 8999999999998 89999999999999999999999999999999999986 33388899999999999999876
Q ss_pred ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecC
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSA 278 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 278 (353)
..+.++... .++++.|..++..+.+|+-|+.|++||++.+ .....+.+|..+|+.++. +|.++.+-+.
T Consensus 167 ----~~~t~~~ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 167 ----AIKTFENKY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred ----hhhccccce--eEEEEEecccccceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccc
Confidence 444443332 3599999999999999999999999999988 677888999999988766 5999999999
Q ss_pred CCeEEEEecCCCcceEE-eccccCCCc----CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 279 DKSIGIWKREAFGKLCR-VGAITGHEG----PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~-~~~~~~h~~----~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
|.++++||++......+ +..+.+|.. .....+|+|+ +..+..|+.|..+++||......+..
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~----~~~i~ags~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN----GTKITAGSADRFVYVWDTTSRRILYK 303 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC----CCccccccccceEEEeecccccEEEE
Confidence 99999999986543223 555666533 4567899999 99999999999999999988665543
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-34 Score=237.78 Aligned_cols=254 Identities=23% Similarity=0.336 Sum_probs=221.6
Q ss_pred EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
..++..+..|..++|. ...++++-..|.|++||.+-+. ++..+ .+|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----li~rF---------------------------deH 50 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----LIDRF---------------------------DEH 50 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----HHhhh---------------------------hcc
Confidence 3455667889999998 5689999999999999998765 33333 389
Q ss_pred CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591 128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
.++|..++|+| .++++|+.|-.|++|+..+.+++.++.+|-..|..+.|+.. .++++|.|.+|+||+..+.+
T Consensus 51 dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~---- 126 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK---- 126 (1202)
T ss_pred CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc----
Confidence 99999999999 89999999999999999999999999999999999999555 99999999999999999998
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc-------------------------ceeeeeeccc
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV-------------------------RWKLACETKA 258 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------~~~~~~~~~~ 258 (353)
++..+.+|...+ .|..|+|....+++++-|.+|++||+..-.. .......+.+
T Consensus 127 -~iavltGHnHYV-McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 127 -CIAVLTGHNHYV-MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred -eEEEEecCceEE-EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 899999999987 9999999999999999999999999864211 1123345567
Q ss_pred cceeEEEEEEcC--cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 259 HEMAVLCVCLVG--EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 259 ~~~~v~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
|...|.-.++.+ .++++|+.|+.|++|.+...+ ...+.+..+|.+.|+++-|+|. .++++|.|+|++|+|||+
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~----q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPH----QDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCc----cceeEecCCCccEEEEec
Confidence 888888888876 799999999999999998754 4578889999999999999998 889999999999999999
Q ss_pred CCCCCccccc
Q 018591 337 SKQSSTSDSE 346 (353)
Q Consensus 337 ~~~~~~~~~~ 346 (353)
.+.+.+++..
T Consensus 280 ~kRt~v~tfr 289 (1202)
T KOG0292|consen 280 TKRTSVQTFR 289 (1202)
T ss_pred ccccceeeee
Confidence 9999988874
No 62
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-32 Score=203.20 Aligned_cols=267 Identities=18% Similarity=0.212 Sum_probs=215.3
Q ss_pred ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCcccee
Q 018591 15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
..+.|++|.|+ ++.|+.++.||++++||....++...+. |..++.+++|. ...+++|+.||.|+.+|++++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCccee-
Confidence 36789999997 6677778899999999998887766665 47899999998 7889999999999999999886322
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDD 169 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 169 (353)
+..|..+|.|+.+.+ +.+++|+.|++|++||.+.......+.. ..
T Consensus 90 --------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~k 136 (323)
T KOG1036|consen 90 --------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GK 136 (323)
T ss_pred --------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cc
Confidence 126999999999997 9999999999999999988666666644 55
Q ss_pred ceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591 170 AVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR 249 (353)
Q Consensus 170 ~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 249 (353)
.|.++...++.|++|+.+..+.+||+++... ..+.....-...+.++++-|++.-.++++-||.|.+=.++.....
T Consensus 137 kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 137 KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred eEEEEeccCCEEEEeecCceEEEEEcccccc----hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 9999999999999999999999999998762 223333344455699999999888999999999988666554322
Q ss_pred eeeeeeccccc---------eeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591 250 WKLACETKAHE---------MAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG 318 (353)
Q Consensus 250 ~~~~~~~~~~~---------~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 318 (353)
......++.|. .+|.+++++ ...|++|+.||.|.+||+.+.+ .+..+...+..|.+++|+.+
T Consensus 213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK---rl~q~~~~~~SI~slsfs~d---- 285 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK---RLKQLAKYETSISSLSFSMD---- 285 (323)
T ss_pred hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh---hhhhccCCCCceEEEEeccC----
Confidence 23333344332 356777776 5689999999999999999887 56666666788999999999
Q ss_pred CeEEEEccC
Q 018591 319 GFLLYSGSL 327 (353)
Q Consensus 319 ~~~l~s~~~ 327 (353)
|..||.++.
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999874
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=225.86 Aligned_cols=258 Identities=21% Similarity=0.328 Sum_probs=220.9
Q ss_pred ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR 122 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (353)
.+.+..+.+|+..|.++.|. +.+|++++.|+.|+||++-... .+ .+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----~~---------------------------lr 252 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----RC---------------------------LR 252 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----ce---------------------------eh
Confidence 34667889999999999886 7889999999999999997733 13 44
Q ss_pred eeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCC
Q 018591 123 LWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKEL 197 (353)
Q Consensus 123 ~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~ 197 (353)
.+.+|..+|..+.|++ ..+++++.|+.|++||+++|+++..+.. ...++|+.+. ++.+++|+.|+.|+.||+++
T Consensus 253 tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 253 TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS 331 (503)
T ss_pred hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence 4559999999999999 8999999999999999999999999854 5678899992 24899999999999999999
Q ss_pred CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591 198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 277 (353)
++ +.+.+..|-+.+ ..+.|-++++++++.+.|+.+++|+.+.+. ..+.......|..+...+.|++.++++-+
T Consensus 332 ~k-----vvqeYd~hLg~i-~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 332 GK-----VVQEYDRHLGAI-LDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred hH-----HHHHHHhhhhhe-eeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhc
Confidence 98 888888888876 999999999999999999999999998873 23445556678888899999999999999
Q ss_pred CCCeEEEEecCCCcceEEeccccCCC--cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITGHE--GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.|+.|.+|.+...-+...-..+.||. +--..+.|||| |.+|++|+.||.+.+||..+-+.+....
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD----G~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD----GRTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC----CCeEEeecCCccEEEeechhhhhhhccc
Confidence 99999999987655554556677885 44677899999 9999999999999999999887776554
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-32 Score=247.27 Aligned_cols=267 Identities=17% Similarity=0.192 Sum_probs=211.6
Q ss_pred CCcEEEEeCCCceeeEEe-----ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeee
Q 018591 35 GKDIIVWQQPDLRMFTKF-----GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKF 107 (353)
Q Consensus 35 dg~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
+|.+++|+..+.+....+ ..|...|.+++|+ ++++++|+.|+.|++|+.+....... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~------------ 523 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH------------ 523 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc------------
Confidence 678999998876655443 3488999999998 88999999999999999764210000 000
Q ss_pred cccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC---CeE
Q 018591 108 MKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK---GIV 181 (353)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~l 181 (353)
.+... ..+...+.+++|++ .+|++++.||.|++||+.+++.+..+.+|...|++++|++ +.|
T Consensus 524 -----------~~~~~-~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 524 -----------YPVVE-LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred -----------cceEE-ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 00001 13446788999986 7899999999999999999999999999999999999942 489
Q ss_pred EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc-CCCCeEEeecCCCcEEEeeccccccceeeeeeccccc
Q 018591 182 YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS-DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE 260 (353)
Q Consensus 182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 260 (353)
++|+.||.|++||++++. ....+..+ .. +.++.|+ +++.++++|+.||.|++||++... .....+.+|.
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~-----~~~~~~~~-~~-v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~ 661 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGV-----SIGTIKTK-AN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHS 661 (793)
T ss_pred EEEcCCCEEEEEECCCCc-----EEEEEecC-CC-eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCCC
Confidence 999999999999999876 44555544 23 4889985 579999999999999999998752 2334556788
Q ss_pred eeEEEEEE-cCcEEEEecCCCeEEEEecCCCc---ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 261 MAVLCVCL-VGEFLCSGSADKSIGIWKREAFG---KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 261 ~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
..+.++.+ ++.+|++++.|+.|++||+.... ....+..+.+|...+..++|+|+ +.+|++|+.||.|++|+.
T Consensus 662 ~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~----~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 662 KTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS----DGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC----CCEEEEEeCCCEEEEEEC
Confidence 88988887 47899999999999999997532 12256678899999999999999 899999999999999998
Q ss_pred CCCC
Q 018591 337 SKQS 340 (353)
Q Consensus 337 ~~~~ 340 (353)
..+.
T Consensus 738 ~~~~ 741 (793)
T PLN00181 738 AFPM 741 (793)
T ss_pred CCCC
Confidence 6554
No 65
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=232.29 Aligned_cols=240 Identities=30% Similarity=0.500 Sum_probs=205.4
Q ss_pred eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeC-CCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQ-PDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
+++.+.+|...|++++|+ ++++++|+.|++|++||+ ..+..++++.+|...|++++|+ ++.+++|+.|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 667789999999999996 889999999999999999 5668999999999999999998 88999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK- 159 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~- 159 (353)
+++++ + .+.+.+|.+.|++++|++ ..+++++.|+.|++||+.++.
T Consensus 275 ~~~~~-----~---------------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 275 VRTGE-----C---------------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred ccCCe-----E---------------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 99865 3 334448999999999999 899999999999999999998
Q ss_pred -eeeeccccCcc--eEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc--eeeEEEEcCCCCeEEee
Q 018591 160 -CLESIKAHDDA--VNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV--SLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 160 -~~~~~~~~~~~--v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~ 232 (353)
+...+..+... ++++.|++ .++++++.|+.+++||+.... ....+.+|... .+.+...++.+.++++|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-----SVGTYTGHSNLVRCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-----ceeeecccCCcceeEecccccCCCCeEEEE
Confidence 56777666555 99999943 399999999999999999887 67777777764 33455567899999999
Q ss_pred cCCCcEEEeeccccccceeeeeecccc-ceeEEEEEEc--CcEEEEec--CCCeEEEEecC
Q 018591 233 GSDGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCLV--GEFLCSGS--ADKSIGIWKRE 288 (353)
Q Consensus 233 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~--~dg~i~iw~~~ 288 (353)
+.|+.|++||+.++ .....+.+| ...+..++++ .+++++++ .|+.+++|..+
T Consensus 398 ~~d~~v~~~~~~s~----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 398 SEDGSVYVWDSSSG----GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eCCceEEEEeCCcc----chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999987 566667777 6666666665 78888888 78999999854
No 66
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=223.96 Aligned_cols=281 Identities=25% Similarity=0.413 Sum_probs=233.4
Q ss_pred CCCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceee--EEeccCceeeEE-EEEe---CCEEEEecCCC
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMF--TKFGHGDGSVKA-VVTV---GNKVFTAHQDS 76 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~-~~~~---~~~l~s~~~dg 76 (353)
+.++..+.+.||...|..+++. +..++++|.||++++|+-...+.+ ..+.+|.+.|.. +++. +..+++|+.|+
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred CcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 3467889999999999999985 778999999999999997655544 346667777776 7775 46799999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEc
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~ 155 (353)
++.+|...+.. +...+.+|+..|.|++... ..+++|+.|.++++|-.
T Consensus 82 ~i~v~~~~~~~--------------------------------P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 82 TIIVFKLSQAE--------------------------------PLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI 129 (745)
T ss_pred eEEEEecCCCC--------------------------------chhhhhccccceeeeecCCcCceEecccccceEEecc
Confidence 99999988765 2344459999999999777 67999999999999975
Q ss_pred CCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591 156 ADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS 234 (353)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 234 (353)
+++...+++|+..|+++.. +.+.+++|+.|.+|++|.- ++ ..+++.+|.+.+ +.+++-+++ .+++++.
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~-----~l~tf~gHtD~V-RgL~vl~~~-~flScsN 198 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GT-----LLKTFSGHTDCV-RGLAVLDDS-HFLSCSN 198 (745)
T ss_pred --hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cc-----hhhhhccchhhe-eeeEEecCC-CeEeecC
Confidence 5677779999999999998 7789999999999999986 33 678999999877 999999875 4788999
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS 312 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 312 (353)
||.|++|++.. ....+..+|...+.+++. ++..++++++|++++||+... +.+.+.-....|+++.+.
T Consensus 199 Dg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e-----~~q~I~lPttsiWsa~~L 268 (745)
T KOG0301|consen 199 DGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE-----CVQVITLPTTSIWSAKVL 268 (745)
T ss_pred CceEEEEeccC-----ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc-----eEEEEecCccceEEEEEe
Confidence 99999999954 477788899999988884 588999999999999999872 444454344589999999
Q ss_pred cCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 313 PNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 313 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
++ |+ +++|+.||.||||........
T Consensus 269 ~N----gD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 269 LN----GD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred eC----CC-EEEeccCceEEEEEecccccC
Confidence 87 54 688889999999998765443
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=202.44 Aligned_cols=232 Identities=18% Similarity=0.193 Sum_probs=197.8
Q ss_pred cCceEEEEEC---CcEEEEEeCCCcEEEEeCC-CceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCcc
Q 018591 16 VGSVSSLALC---GEFILSASQGKDIIVWQQP-DLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSE 88 (353)
Q Consensus 16 ~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~ 88 (353)
.+.+..++|+ .+.+++++.||++++||+. ...+++.++.|...|.++.|+ +..+++++.|++|++|+...+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~- 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN- 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-
Confidence 5688899996 7799999999999999954 345788899999999999998 6778888999999999987765
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeecc
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIK 165 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~ 165 (353)
. .+.+.+|...|....|+| +++++++.|+.+++||++..-....++
T Consensus 139 ----S---------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 139 ----S---------------------------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred ----c---------------------------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 2 333458999999999999 999999999999999998754444488
Q ss_pred ccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEe
Q 018591 166 AHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGW 241 (353)
Q Consensus 166 ~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~ 241 (353)
.|...+.++.| +++.+++|+.|+.|+.||+++-+ .++..+.+|.-.+ ..+.|||. ...|++++.|=++++|
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~AV-Rkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGLAV-RKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCceEE-EEEecCcchhhHhhhccccceEEec
Confidence 99999999999 56699999999999999999877 4677788887766 99999996 4688999999999999
Q ss_pred eccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEec
Q 018591 242 EGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~ 287 (353)
|...+. ........|..-+..+.++ +.++|+.+.|+.++||+.
T Consensus 263 ~~~~~d---s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 263 DPERQD---SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccch---hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 998653 3444556788888888876 889999999999999984
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=200.90 Aligned_cols=265 Identities=19% Similarity=0.266 Sum_probs=211.4
Q ss_pred CccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-ceee-EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 14 GHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-LRMF-TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 14 ~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
.-.+.|.+|+|+ ..+++++|.||+||+|+++. |..+ +....|.++|.+++|+ |..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 356899999998 56788999999999999986 3443 3446689999999998 899999999999999999998
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeee
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
+...+ ..|.++|.++.|-+ ..|++|+.|++|+.||.+...++.
T Consensus 105 Q~~~v---------------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 105 QVSQV---------------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred Ceeee---------------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence 73222 26999999999987 478999999999999999999988
Q ss_pred eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
++.- .+.++++.....+++.+..++.|.+|+++++.. ............+++++..++....+.|+-+|.+.+..
T Consensus 152 t~~L-PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 152 TLQL-PERVYAADVLYPMAVVATAERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred eeec-cceeeehhccCceeEEEecCCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence 8864 678899988888999999999999999987752 22223333344458999999988889999999999999
Q ss_pred ccccccceeeeeeccccc---------eeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591 243 GNVEIVRWKLACETKAHE---------MAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~---------~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~ 311 (353)
+..+.+. ....++.|+ ..|.++++. -..|++++.||+..+||-+... .+...+.|..+|++..|
T Consensus 227 id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 227 IDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCSF 301 (347)
T ss_pred cCCCCcc--CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeEe
Confidence 8875321 112222232 345555554 6789999999999999987665 56677889999999999
Q ss_pred ecCCCCCCeEEEEc
Q 018591 312 SPNAVGGGFLLYSG 325 (353)
Q Consensus 312 ~~~~~~~~~~l~s~ 325 (353)
+.+ |.+++-+
T Consensus 302 n~~----G~ifaYA 311 (347)
T KOG0647|consen 302 NRN----GSIFAYA 311 (347)
T ss_pred cCC----CCEEEEE
Confidence 999 8877654
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=5.6e-33 Score=218.41 Aligned_cols=298 Identities=16% Similarity=0.251 Sum_probs=220.2
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce----eeEEe-ccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR----MFTKF-GHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~----~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
-..|++|+..|++++++ |..|++||.|.+|++||+.... ..+.+ ......|.++.|+ ++.|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 35789999999999996 9999999999999999987532 22222 2335578999998 88888888888999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~ 156 (353)
++|-+... .+..... ..++... ..-.||...++|.+|+| +.+++++.||++++||++
T Consensus 240 l~DRdG~~-----~~e~~KG-DQYI~Dm--------------~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 240 LLDRDGFE-----IVEFSKG-DQYIRDM--------------YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred EEccCCce-----eeeeecc-chhhhhh--------------hccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 99976654 2221111 1111111 11138999999999999 899999999999999997
Q ss_pred Ccee-eeec-----cccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC-ceeeEEEEcCCCC
Q 018591 157 DLKC-LESI-----KAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD-VSLNSVVVSDDGK 227 (353)
Q Consensus 157 ~~~~-~~~~-----~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 227 (353)
+.+. .+.+ .+..-+++.++|+++ .+++|+.||.|.+|+..... .......-.+|.. ..|+++.||++|+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~--v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT--VRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc--cccceEeeeccCCCCceeEEEeccccc
Confidence 6442 2222 223457888999433 89999999999999985543 2223344455654 2349999999999
Q ss_pred eEEeecCCCcEEEeecccccccee-eeeeccccceeEEEEEEcCcEEEEecC------CCeEEEEecCCCcceEEecccc
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWK-LACETKAHEMAVLCVCLVGEFLCSGSA------DKSIGIWKREAFGKLCRVGAIT 300 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~ 300 (353)
+|++-+.|+++++||++..+.... ...-.......-+|++|+.++|++|.. .|.+.+||..+.+ .+..+.
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~ 454 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKID 454 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEec
Confidence 999999999999999998643222 122223344556788899999999864 5789999998877 555555
Q ss_pred CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
-....|..+.|+|. -+.+..|+.||.+++|=
T Consensus 455 i~~aSvv~~~Whpk----LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 455 ISTASVVRCLWHPK----LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCceEEEEeecch----hhheeeecCCCceEEEE
Confidence 55778999999998 77889999999999984
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-32 Score=217.84 Aligned_cols=267 Identities=21% Similarity=0.301 Sum_probs=221.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY 103 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 103 (353)
.+.||.|.. ..|++|+..+++.......+...|+++.|+ |.+|++|..+|.|.+||..+.. .+..+
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-----~~~~~------ 255 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-----KTRTL------ 255 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-----ccccc------
Confidence 556776654 589999999998777776668999999998 9999999999999999998765 22222
Q ss_pred eeeecccceeEeecccceeeeee-cCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeee-ccccCcceEEEEE--eCC
Q 018591 104 LGKFMKQSNYVQTRRHHKRLWIE-HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLES-IKAHDDAVNGLVA--SKG 179 (353)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~i~~--~~~ 179 (353)
.+ |...|.+++|....+.+|+.|+.|..+|++..+.... +.+|...|..+.| ...
T Consensus 256 ---------------------~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 256 ---------------------RGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred ---------------------cCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC
Confidence 24 9999999999999999999999999999998776555 8899999999999 344
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeec--CCCcEEEeeccccccceeeeeec
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGG--SDGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
++++|+.|+.+.|||..... +...+..|...+ .+++|+|- ...||+|+ .|+.|++||..++ ..+...
T Consensus 315 ~lASGgnDN~~~Iwd~~~~~-----p~~~~~~H~aAV-KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g----~~i~~v 384 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSPE-----PKFTFTEHTAAV-KALAWCPWQSGLLATGGGSADRCIKFWNTNTG----ARIDSV 384 (484)
T ss_pred eeccCCCccceEeccCCCcc-----ccEEEeccceee-eEeeeCCCccCceEEcCCCcccEEEEEEcCCC----cEeccc
Confidence 99999999999999997666 778888898887 99999994 56788764 6999999999987 333222
Q ss_pred cccceeEEEEEEcCc--EEEE--ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591 257 KAHEMAVLCVCLVGE--FLCS--GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 257 ~~~~~~v~~~~~~~~--~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~ 332 (353)
.....|+.+.|... -|++ |..++.|.||+..+.+ .+..+.+|...|..++++|| |..+++|+.|.+++
T Consensus 385 -dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPd----g~~i~t~a~DETlr 456 (484)
T KOG0305|consen 385 -DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK---LVAELLGHTSRVLYLALSPD----GETIVTGAADETLR 456 (484)
T ss_pred -ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc---eeeeecCCcceeEEEEECCC----CCEEEEecccCcEE
Confidence 23567888888732 2443 4568899999999866 78889999999999999999 99999999999999
Q ss_pred EEEcCCCCCcc
Q 018591 333 VWWVSKQSSTS 343 (353)
Q Consensus 333 iw~~~~~~~~~ 343 (353)
+|++-......
T Consensus 457 fw~~f~~~~~~ 467 (484)
T KOG0305|consen 457 FWNLFDERPKS 467 (484)
T ss_pred eccccCCCCcc
Confidence 99988754333
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-32 Score=211.15 Aligned_cols=273 Identities=21% Similarity=0.303 Sum_probs=222.1
Q ss_pred cCceEEEEECC----cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccc
Q 018591 16 VGSVSSLALCG----EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSEN 89 (353)
Q Consensus 16 ~~~v~~~~~~~----~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~ 89 (353)
.++|++++|+. ++.+++|. .+.+|+..+....+.+..-...+.++.|. |.++++|+..|.|+++|..+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-- 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-- 101 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--
Confidence 46899999973 45555543 89999999888888777778889999997 9999999999999999965432
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
. .+.+.+|+.++..+.|+| ..+++|+.|+.+++||+.+......+.+
T Consensus 102 ---i---------------------------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ 151 (487)
T KOG0310|consen 102 ---I---------------------------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG 151 (487)
T ss_pred ---H---------------------------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence 1 233348999999999999 7889999999999999999887678999
Q ss_pred cCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591 167 HDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG 243 (353)
Q Consensus 167 ~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 243 (353)
|+..|.|.++.+. ++++|+.||.|++||++... ....+-..+.+|..+.+-|.|..+++++.+ .|++||+
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl 224 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDL 224 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEe
Confidence 9999999999333 89999999999999999874 223333344456999999999999988754 5999999
Q ss_pred cccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeE
Q 018591 244 NVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 321 (353)
-++. +.......|...|+|+... +..|++|+-|+.|++||+.+.+ .+..+. ..++|.+++.+|+ ++.
T Consensus 225 ~~G~---qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K---vv~s~~-~~~pvLsiavs~d----d~t 293 (487)
T KOG0310|consen 225 TTGG---QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK---VVHSWK-YPGPVLSIAVSPD----DQT 293 (487)
T ss_pred cCCc---eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE---EEEeee-cccceeeEEecCC----Cce
Confidence 9663 4455556699999999885 6899999999999999987766 454443 5789999999999 899
Q ss_pred EEEccCCCeEEEEEcCCCC
Q 018591 322 LYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 322 l~s~~~dg~i~iw~~~~~~ 340 (353)
++.|..||.+.+=+....+
T Consensus 294 ~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 294 VVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EEEecccceeeeehhhccc
Confidence 9999999988777544433
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=227.01 Aligned_cols=246 Identities=17% Similarity=0.290 Sum_probs=190.7
Q ss_pred eeee-CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--------------------------------c--------
Q 018591 10 AVLS-GHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--------------------------------L-------- 46 (353)
Q Consensus 10 ~~l~-~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--------------------------------~-------- 46 (353)
+.+. +|.++|+++.|+ |+|||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 899999999996 99999999999999998654 0
Q ss_pred --------------------eeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591 47 --------------------RMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG 105 (353)
Q Consensus 47 --------------------~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
+++..+.+|.+.|..|.|+ .++|++++.|.+||+|++.... ++..+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-----CL~~F-------- 406 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-----CLKVF-------- 406 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcc-----eeeEE--------
Confidence 2345567899999999999 8999999999999999998776 55554
Q ss_pred eecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC-e
Q 018591 106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG-I 180 (353)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~-~ 180 (353)
.|..-|+|++|+| +++++|+-||.|+||++...+.+.-... ...|+++++ +++ .
T Consensus 407 --------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 407 --------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKG 465 (712)
T ss_pred --------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCce
Confidence 7999999999999 8999999999999999987666554443 589999999 333 8
Q ss_pred EEEEcCCCcEEEEeCCCCCcccccceeee--eccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591 181 VYSASADGKIKAWGKELGKSHCHSLKGIL--EGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 257 (353)
.+.|+.+|.+++|+....+......+... +......|+.+.|.|.. ..+++.+.|..|+|||.+......++.....
T Consensus 466 avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n 545 (712)
T KOG0283|consen 466 AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN 545 (712)
T ss_pred EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc
Confidence 89999999999999988762211111110 01112246999999743 4688888999999999987743333333333
Q ss_pred ccceeEEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591 258 AHEMAVLCVCLVGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~ 289 (353)
.....-.++..+|++|++++.|..|++|+...
T Consensus 546 ~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 546 TSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 33334455666899999999999999999743
No 73
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1e-30 Score=218.83 Aligned_cols=257 Identities=17% Similarity=0.189 Sum_probs=190.8
Q ss_pred EECCcEEEEEeCCCcEEEEeCCCceee-------------EEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccC
Q 018591 23 ALCGEFILSASQGKDIIVWQQPDLRMF-------------TKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 23 ~~~~~~l~s~~~dg~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~ 86 (353)
++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+ +++|++++.|++|++||+.+.
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 345667788888877788875443322 2367899999999997 568999999999999999765
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeee
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLES 163 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~ 163 (353)
.... . .......+.+|...|.+++|+| ++|++|+.|+.|++||+++++.+..
T Consensus 109 ~~~~-----~--------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~ 163 (493)
T PTZ00421 109 GLTQ-----N--------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV 163 (493)
T ss_pred cccc-----c--------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE
Confidence 3100 0 0012334458999999999998 5899999999999999999999999
Q ss_pred ccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec----CCCc
Q 018591 164 IKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG----SDGF 237 (353)
Q Consensus 164 ~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~ 237 (353)
+..|...|.+++|++ ..+++++.|+.|++||+++++ ....+.+|.......+.|.+++..+++++ .|+.
T Consensus 164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 999999999999943 389999999999999999887 56677788765546788999877777654 4789
Q ss_pred EEEeeccccccceeeeeecccc-ceeE--EEEEEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 238 VMGWEGNVEIVRWKLACETKAH-EMAV--LCVCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
|++||++....... ....+ ...+ ..+.+++++|++++ .|+.|++||+.+++..... . ..+..++..++|.|
T Consensus 239 VklWDlr~~~~p~~---~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~-~-~~s~~~~~g~~~~p 313 (493)
T PTZ00421 239 IMLWDTRKMASPYS---TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS-S-YSSVEPHKGLCMMP 313 (493)
T ss_pred EEEEeCCCCCCcee---EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe-e-ccCCCCCcceEecc
Confidence 99999987532221 11111 1222 33455688888877 5999999999987633221 1 23556788999998
Q ss_pred C
Q 018591 314 N 314 (353)
Q Consensus 314 ~ 314 (353)
.
T Consensus 314 k 314 (493)
T PTZ00421 314 K 314 (493)
T ss_pred c
Confidence 6
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1e-31 Score=198.73 Aligned_cols=284 Identities=18% Similarity=0.290 Sum_probs=223.7
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC------------c------eeeEEeccCceeeEEEEEe--C
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD------------L------RMFTKFGHGDGSVKAVVTV--G 66 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~--~ 66 (353)
...+..|+.++.+-+|+ |.++|+|+.|-.|+|.|++. + ..++++-.|...|+.+.|. .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 34677899999999996 99999999999999999761 1 2567788899999999998 7
Q ss_pred CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591 67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG 144 (353)
Q Consensus 67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~ 144 (353)
..|++++.|++|+++|+........ ... .....+|.++.|+| +++++|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA--~K~----------------------------~qd~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRA--FKV----------------------------FQDTEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHH--HHH----------------------------hhccceeeeEeecCCCceEEEe
Confidence 8899999999999999876541110 000 13456899999999 899999
Q ss_pred cCCCcEEEEEcCCceeeeec---cccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceee
Q 018591 145 SWDKTLKVWRVADLKCLESI---KAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLN 218 (353)
Q Consensus 145 ~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~ 218 (353)
..-..+++||+++.++...- ..|.+.|+++.++ .++.++++.||.|++||--.++ +... -..|.+..|.
T Consensus 235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-----Cv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-----CVRTIGNAHGGSEVC 309 (430)
T ss_pred cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH-----HHHHHHhhcCCceee
Confidence 99999999999998876543 4688999999993 3489999999999999988776 4444 4568888889
Q ss_pred EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc--ce---eEEEEEEc--CcEEEEec-CCCeEEEEecCCC
Q 018591 219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EM---AVLCVCLV--GEFLCSGS-ADKSIGIWKREAF 290 (353)
Q Consensus 219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~---~v~~~~~~--~~~l~~~~-~dg~i~iw~~~~~ 290 (353)
+..|..+++++++.+.|..+++|.+.++. ......+. .+ --+...|+ ..+++.-. ..+.+.-||.++.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGR----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCc----eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 99999999999999999999999999984 33333221 11 11112232 45555443 4678999999987
Q ss_pred cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 291 GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 291 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
.....+ -.+|++.+..+.-+|. +.-+++++.|-.+|+|--+
T Consensus 386 dr~~l~--slgHn~a~R~i~HSP~----~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 386 DRVALL--SLGHNGAVRWIVHSPV----EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhc--ccCCCCCceEEEeCCC----CCceeeecccceeeeeeec
Confidence 743222 3589999999999999 8899999999999999644
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.3e-31 Score=211.18 Aligned_cols=248 Identities=30% Similarity=0.474 Sum_probs=205.2
Q ss_pred EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
..+.+|..+|.++.|+ ++++++++.||.+++|++.++.. ...+..|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--------------------------------~~~~~~~ 50 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------------------------LRTLKGH 50 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--------------------------------EEEEecC
Confidence 4567899999999998 58999999999999999987641 1122268
Q ss_pred CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccc
Q 018591 128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
...+..+.|.+ +.+++++.||.|++||+.+++.+..+..|...+.++.+.+ ..+++++.++.+++||+++.+
T Consensus 51 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 126 (289)
T cd00200 51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK---- 126 (289)
T ss_pred CcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE----
Confidence 88889999998 5899999999999999998888888888998999999944 466677779999999999766
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS 281 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~ 281 (353)
....+..|...+ .+++|+|++.++++++.++.+++||++.. +....+..|...+.++.++ ++.+++++.++.
T Consensus 127 -~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 127 -CLTTLRGHTDWV-NSVAFSPDGTFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred -EEEEeccCCCcE-EEEEEcCcCCEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 555666666655 99999999999999888999999999876 3444455677677777775 558999999999
Q ss_pred EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
|++||+..++ .+..+..|...+.++.|+|+ +.++++++.||.|++|++.+++......
T Consensus 201 i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 201 IKLWDLSTGK---CLGTLRGHENGVNSVAFSPD----GYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred EEEEECCCCc---eecchhhcCCceEEEEEcCC----CcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 9999998866 56667788899999999998 8899999999999999999776655443
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4e-31 Score=199.29 Aligned_cols=241 Identities=15% Similarity=0.253 Sum_probs=198.3
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
.++.....+.||++.|+++.|+ |.+||||+.+|.|+||+..++.....+...-..+.=+.|. +..|++|+.||.+.
T Consensus 94 ~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 94 STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence 4677888999999999999996 9999999999999999999999998887555667777777 78999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
+|.+..+. ..+++.+|..++++=.|.| +.++++..||+|++||+.+
T Consensus 174 mw~ip~~~--------------------------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 174 MWQIPSQA--------------------------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred EEECCCcc--------------------------------eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence 99998754 1334448999999999999 8999999999999999999
Q ss_pred ceeeeeccc---------------------------------------------------cCcceEEEEE---eCC--eE
Q 018591 158 LKCLESIKA---------------------------------------------------HDDAVNGLVA---SKG--IV 181 (353)
Q Consensus 158 ~~~~~~~~~---------------------------------------------------~~~~v~~i~~---~~~--~l 181 (353)
++++..+.. +...+.++.+ +.. +.
T Consensus 222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~ 301 (399)
T KOG0296|consen 222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA 301 (399)
T ss_pred CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence 887766531 0111112222 111 67
Q ss_pred EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591 182 YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
++|+.||+|.|||+.... .+..-.|...+ ..+.|-+ ..+|++++.+|.|+.||.+++ .+.....+|..
T Consensus 302 A~G~vdG~i~iyD~a~~~------~R~~c~he~~V-~~l~w~~-t~~l~t~c~~g~v~~wDaRtG----~l~~~y~GH~~ 369 (399)
T KOG0296|consen 302 ACGSVDGTIAIYDLAAST------LRHICEHEDGV-TKLKWLN-TDYLLTACANGKVRQWDARTG----QLKFTYTGHQM 369 (399)
T ss_pred hcccccceEEEEecccch------hheeccCCCce-EEEEEcC-cchheeeccCceEEeeecccc----ceEEEEecCch
Confidence 888999999999998875 34444455554 8999998 789999999999999999999 67888899999
Q ss_pred eEEEEEE--cCcEEEEecCCCeEEEEecC
Q 018591 262 AVLCVCL--VGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 262 ~v~~~~~--~~~~l~~~~~dg~i~iw~~~ 288 (353)
.|.+++. +.+++++++.|++.++|+..
T Consensus 370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9988876 58899999999999999864
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4.4e-31 Score=225.06 Aligned_cols=297 Identities=18% Similarity=0.276 Sum_probs=229.6
Q ss_pred ccCceEEEEEC--CcEEEEEe--CCCcEEEEeCCC------------ceeeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591 15 HVGSVSSLALC--GEFILSAS--QGKDIIVWQQPD------------LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~--~dg~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
+...|.+++.+ |..++||+ .||.++||+.+. .+.+.....|.+.|.|+.|+ |.+||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 45678999996 88999999 899999998542 23456667899999999998 89999999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
.|.+|...... ....... ..............++.+|...|..++|+| .++++++.|++|.+||
T Consensus 92 ~v~iW~~~~~~--~~~~fgs------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 92 LVMIWERAEIG--SGTVFGS------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred eEEEeeecccC--Ccccccc------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence 99999987411 0000000 000011112234556679999999999999 8999999999999999
Q ss_pred cCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-----CceeeEEEEcCCCC
Q 018591 155 VADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-----DVSLNSVVVSDDGK 227 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~ 227 (353)
..+.+.+..+++|.+.|..+.|.| .+|++-+.|++|++|++.+-. +.+....+. ..-...+.|||||+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-----i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-----IEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce-----eeEeeccchhhCCCcceeeecccCCCcC
Confidence 999999999999999999999943 499999999999999976644 333333222 22247899999999
Q ss_pred eEEeecC----CCcEEEeeccccccceeeeeeccccceeEEEEEEc-------Cc------------EEEEecCCCeEEE
Q 018591 228 WVYGGGS----DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-------GE------------FLCSGSADKSIGI 284 (353)
Q Consensus 228 ~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~------------~l~~~~~dg~i~i 284 (353)
+|++... -..+.|.+..+ |+....+-+|..++.++.|+ .+ .+|+|+.|++|.|
T Consensus 233 ~las~nA~n~~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred eecchhhccCCcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 9998643 34677776644 46777888999999998885 12 6889999999999
Q ss_pred EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
|.....+.+..+..+ ....|.+++|+|| |..|+.+|.||+|.+..+++.+
T Consensus 309 W~T~~~RPl~vi~~l--f~~SI~DmsWspd----G~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNL--FNKSIVDMSWSPD----GFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EecCCCCchhhhhhh--hcCceeeeeEcCC----CCeEEEEecCCeEEEEEcchHH
Confidence 999776654334333 3567999999999 9999999999999999998753
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-32 Score=197.15 Aligned_cols=245 Identities=23% Similarity=0.294 Sum_probs=208.9
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
.+|.=+.+|.||.++|++...+ ....|+++.|-+-++||.-+|..+..+.+ ..-|.+++|+ .++|++|+.+..+|
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhccchHHHhh
Confidence 3566788999999999999997 55788999999999999999999998864 7789999998 78999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
++|++..+.. ...+.+|++.|..+.|.. +.+++++.|++|++||.++
T Consensus 126 vfdln~p~Ap-------------------------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT 174 (334)
T KOG0278|consen 126 VFDLNRPKAP-------------------------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT 174 (334)
T ss_pred hhhccCCCCC-------------------------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence 9999877632 222238999999999987 8899999999999999999
Q ss_pred ceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 158 LKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+..++++.. ..+|+++.+ +++.+++....+.|.+||..+-. ++..+..... |.+...+|+...+++|+.|.
T Consensus 175 gt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~-----~lKs~k~P~n--V~SASL~P~k~~fVaGged~ 246 (334)
T KOG0278|consen 175 GTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG-----LLKSYKMPCN--VESASLHPKKEFFVAGGEDF 246 (334)
T ss_pred CcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEecccccc-----ceeeccCccc--cccccccCCCceEEecCcce
Confidence 999999864 788999999 67788888899999999999876 5555555443 58899999999999999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
.++.||..++... ....++|.++|.|+.+ +|...++|+.||+|++|....++
T Consensus 247 ~~~kfDy~TgeEi---~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 247 KVYKFDYNTGEEI---GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEEeccCCcee---eecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999998422 2224889999988876 58999999999999999987655
No 79
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=8.3e-30 Score=214.43 Aligned_cols=260 Identities=12% Similarity=0.165 Sum_probs=190.6
Q ss_pred EEECCcEEEE------EeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 22 LALCGEFILS------ASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 22 ~~~~~~~l~s------~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
++.++++++. |+.++.|++|+......+..+.+|.+.|.+++|+ +++|++|+.||+|++||+.++....
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~-- 111 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV-- 111 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc--
Confidence 4445555443 5678899999988888888999999999999998 4789999999999999997643110
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDD 169 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 169 (353)
..+ ..+...+.+|...|.+++|+| ..+++++.|+.|++||+++++.+..+. |..
T Consensus 112 --~~i--------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~ 168 (568)
T PTZ00420 112 --KEI--------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK 168 (568)
T ss_pred --ccc--------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence 000 011223448999999999999 346789999999999999988777775 567
Q ss_pred ceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce----eeEEEEcCCCCeEEeecCCC----cEE
Q 018591 170 AVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS----LNSVVVSDDGKWVYGGGSDG----FVM 239 (353)
Q Consensus 170 ~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~ 239 (353)
.|.+++|+ +..|++++.|+.|++||+++++ ....+.+|.+.. +....|++++.++++++.|+ .|+
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCc-----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 89999993 3488888899999999999987 667778887643 12234568888999877764 799
Q ss_pred EeeccccccceeeeeeccccceeEEEE-EE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCV-CL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
+||++...... .......+...+..+ .+ ++.++++|+.|+.|++|++..+. ...+..+. +..++.+++|.|+
T Consensus 244 LWDlr~~~~pl-~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pk 317 (568)
T PTZ00420 244 LWDLKNTTSAL-VTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPK 317 (568)
T ss_pred EEECCCCCCce-EEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc-cCCCccceEEccc
Confidence 99998632111 111222233332222 22 37889999999999999998753 34454444 6788999999997
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=202.52 Aligned_cols=284 Identities=21% Similarity=0.335 Sum_probs=223.4
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee----EE-------------e-ccCceeeEEEEEe--C
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF----TK-------------F-GHGDGSVKAVVTV--G 66 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~--~ 66 (353)
...+..|.-+|.+++++ +.+.++++.||+|.-|+..+++.. .. - ..|...+.+++.+ +
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999996 789999999999999998877633 11 0 2677788888887 8
Q ss_pred CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591 67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG 144 (353)
Q Consensus 67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~ 144 (353)
.+|++|+.|..|.||+.++.+ +...+.+|.+.|.+++|-. +.++++
T Consensus 215 kylatgg~d~~v~Iw~~~t~e--------------------------------hv~~~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE--------------------------------HVKVFKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred cEEEecCCCceEEEecCcccc--------------------------------hhhcccccccceeeeeeecCccceeee
Confidence 999999999999999999876 2334458999999999987 899999
Q ss_pred cCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEE-EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591 145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVY-SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV 222 (353)
Q Consensus 145 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (353)
+.|+.|++|+++....+.++.+|...|.+|.. ....++ +|+.|+++++|++... ....+.++.+.+ .+++|
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee------sqlifrg~~~si-dcv~~ 335 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE------SQLIFRGGEGSI-DCVAF 335 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc------ceeeeeCCCCCe-eeEEE
Confidence 99999999999999999999999999999988 444555 5559999999999554 456677777666 89998
Q ss_pred cCCCCeEEeecCCCcEEEeeccccccceeeeeec--------cccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc-
Q 018591 223 SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET--------KAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG- 291 (353)
Q Consensus 223 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~- 291 (353)
-.+ ..+++|+.+|.|.+|++...++.+.....- ..++.++++++. ..+++++|+.+|.|++|-+..+-
T Consensus 336 In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 336 IND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 765 479999999999999998875443221111 111236666665 47899999999999999998762
Q ss_pred ceEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEEEEcC
Q 018591 292 KLCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~ 337 (353)
.+.++..+. -.+.|++++|+++ |+ +++..+....+--|-..
T Consensus 415 ~i~~l~~ls-~~GfVNsl~f~~s----gk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSLAFSNS----GKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred ccceeeecc-cccEEEEEEEccC----CCEEEEecccccccceeeEe
Confidence 334555554 6788999999999 77 44555666666666543
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-32 Score=219.25 Aligned_cols=282 Identities=19% Similarity=0.337 Sum_probs=225.4
Q ss_pred CccCceE---EEEEC---CcEEEEEeCCCcEEEEeCCCc------eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 14 GHVGSVS---SLALC---GEFILSASQGKDIIVWQQPDL------RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 14 ~h~~~v~---~~~~~---~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
.|...|. .+..+ +++|+|||.||.|++|+...- ..+..+++|...|+.+... ++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3555566 44444 778999999999999997532 2467889999999998876 77999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE-eC--CeEEEecCCCcEEEEEcC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV-YN--GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--~~l~~~~~dg~v~iwd~~ 156 (353)
+|+...... .++. .+..|...|.|+++ .+ ..+++|+.|+.|.+||++
T Consensus 99 ~W~~~~~~~---~c~s---------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 99 VWNAHKDNT---FCMS---------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred EeecccCcc---hhHh---------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 999876641 1222 22379999999999 44 899999999999999999
Q ss_pred Cce--eee--------ecc-ccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591 157 DLK--CLE--------SIK-AHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 157 ~~~--~~~--------~~~-~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
++. .+. .+. ++..+|++++.++. .+++|+.++.|++||.++.+ ....+.+|...+ ..+..+
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-----kimkLrGHTdNV-r~ll~~ 222 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-----KIMKLRGHTDNV-RVLLVN 222 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc-----ceeeeeccccce-EEEEEc
Confidence 762 222 223 77889999999665 89999999999999999988 667788999987 999999
Q ss_pred CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591 224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 301 (353)
+||..+++++.||+|++||+... ++..++..|...+.++..+ -.++++|+.||.|..=|+++......+. .
T Consensus 223 dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---k 295 (735)
T KOG0308|consen 223 DDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---K 295 (735)
T ss_pred CCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee---c
Confidence 99999999999999999999987 6677778888888888765 5689999999999999999865433333 2
Q ss_pred CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
...+|..+..... .+-+-+++.|+.|+-|..+....+
T Consensus 296 ~daPv~~l~~~~~----~~~~WvtTtds~I~rW~~~~~~~l 332 (735)
T KOG0308|consen 296 EDAPVLKLHLHEH----DNSVWVTTTDSSIKRWKLEPDIAL 332 (735)
T ss_pred CCCchhhhhhccc----cCCceeeeccccceecCCcccccc
Confidence 4567888888765 444577788999999987755433
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=199.37 Aligned_cols=273 Identities=20% Similarity=0.288 Sum_probs=227.0
Q ss_pred CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
..+.++... ...+++|+.|..+.++|.++++.+..+++|...|..+.++ ...+++++.|-.|++|.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---- 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---- 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence 467777775 3899999999999999999999999999999999999998 56789999999999999876552
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc--cC
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA--HD 168 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~ 168 (353)
......|..+|+.+..+| ++|++++.||+..+.|++++.++..... ..
T Consensus 296 ----------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~ 347 (506)
T KOG0289|consen 296 ----------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD 347 (506)
T ss_pred ----------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence 122237999999999999 9999999999999999999988776643 23
Q ss_pred cceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 169 DAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 169 ~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
-.+++.+|+++ .|.+|..||.+++||+..+. ....+.+|.+.+ ..++|+.+|-+|++++.|+.|++||++..
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-----~~a~Fpght~~v-k~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-----NVAKFPGHTGPV-KAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-----ccccCCCCCCce-eEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 45889999444 77889999999999999887 678889988876 99999999999999999999999999987
Q ss_pred ccceeeeeeccc-cceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591 247 IVRWKLACETKA-HEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY 323 (353)
Q Consensus 247 ~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~ 323 (353)
. ....+.. ....+.++++ +|.+|+.++.|=.|++++-.+ +.+.++..+..|.+..+.+.|... .++++
T Consensus 422 ~----n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~----aq~l~ 492 (506)
T KOG0289|consen 422 K----NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEH----AQYLA 492 (506)
T ss_pred c----ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeeccc----ceEEe
Confidence 3 2222221 1224555555 499999998887777777544 455678888889999999999998 89999
Q ss_pred EccCCCeEEEEEc
Q 018591 324 SGSLDKSLRVWWV 336 (353)
Q Consensus 324 s~~~dg~i~iw~~ 336 (353)
++|.|..++++.+
T Consensus 493 s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 493 STSMDAILRLYAL 505 (506)
T ss_pred eccchhheEEeec
Confidence 9999999998865
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-30 Score=192.39 Aligned_cols=261 Identities=18% Similarity=0.293 Sum_probs=202.0
Q ss_pred CCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRV 80 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~ 80 (353)
+..++..+..|.++|+++|.++.++|+||.|-+|+|||++....+..+-.|.+.|+++.|. .+.|++|+.||.|.+
T Consensus 32 ~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred eeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 4456788999999999999999999999999999999999999999999999999999998 237999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
|+...-. ++.++. +|.+.|+.++.+| .+.++.+.|+.+++||+-++
T Consensus 112 w~~~~W~-----~~~slK---------------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 112 WRVGSWE-----LLKSLK---------------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred EEcCCeE-----Eeeeec---------------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 9986643 444443 7999999999999 77778899999999999888
Q ss_pred eeeeeccccCcceEEEEE-e-CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVA-S-KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+.-..++- ...-+.+.| + +++++.+.. ..|-+|.+.+.. +........ . +.++.|. ++..+++|..|+
T Consensus 160 r~a~v~~L-~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~-----v~~~i~~~~-r-~l~~~~l-~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 160 RVAFVLNL-KNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNAS-----VFREIENPK-R-ILCATFL-DGSELLVGGDNE 229 (362)
T ss_pred ccceeecc-CCcceeeEEcCCCCEEEEEec-cEEEEEecccHh-----Hhhhhhccc-c-ceeeeec-CCceEEEecCCc
Confidence 76544432 222334778 3 336666665 468999988776 333333331 1 2455554 466899999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEEc----CcEEEEecCCCeEEEEecCCCc--ceEEeccccCCCcCeEEEE
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFG--KLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~ 310 (353)
.|.+||.... .+...+.+|...|-.+.+- +.+|++++.||.|++||++... ++..+..+.. ...++|+.
T Consensus 230 ~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~ 304 (362)
T KOG0294|consen 230 WISLKDTDSD----TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLR 304 (362)
T ss_pred eEEEeccCCC----ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceee
Confidence 9999999986 6778889999999988852 5799999999999999998652 2223333332 44566665
Q ss_pred ee
Q 018591 311 AS 312 (353)
Q Consensus 311 ~~ 312 (353)
..
T Consensus 305 ~~ 306 (362)
T KOG0294|consen 305 VK 306 (362)
T ss_pred eh
Confidence 44
No 84
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-30 Score=213.11 Aligned_cols=336 Identities=17% Similarity=0.227 Sum_probs=226.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCc
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSR 77 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~ 77 (353)
.++++.+.+++++.+.|+++.-+ =+.+|.|..+|+|.++|+..++.+.++++..+.|++++|. | ..+++++..|.
T Consensus 189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence 57899999999999999999887 5789999999999999999999999999877999999997 4 46778888899
Q ss_pred EEEEEcccCccceeEE-ee--------ccccccceeeeecccceeEeec------ccceeeeeecCCceEEEEEeC---C
Q 018591 78 IRVWKVSRSSENVFRL-VD--------TLPTTKDYLGKFMKQSNYVQTR------RHHKRLWIEHADSISCLTVYN---G 139 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~---~ 139 (353)
+.+||++......... .. .++..........+........ .+..+.-.||..+-.|+.|.. .
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 9999998876211111 00 0111111111111110000000 011222235666666666654 5
Q ss_pred eEEEecCCCcEEEEEcCCceeeeeccc------------------cCcceEEEEEe-------CCeEEEEcCCCcEEEEe
Q 018591 140 LIYSGSWDKTLKVWRVADLKCLESIKA------------------HDDAVNGLVAS-------KGIVYSASADGKIKAWG 194 (353)
Q Consensus 140 ~l~~~~~dg~v~iwd~~~~~~~~~~~~------------------~~~~v~~i~~~-------~~~l~~~~~dg~i~iwd 194 (353)
.+.+++.|++.+.+++.....-+.+.. .-.+|..+++. ++.+...-.+..++.|+
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence 566666666666666554444333210 01234444441 12344444455566666
Q ss_pred CCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc
Q 018591 195 KELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE 271 (353)
Q Consensus 195 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 271 (353)
.++.......+... ++. ....+++++.++.|++.+.|+..|.|-+|+++++.....+ .....|..+|+.++.| ++
T Consensus 429 ~~n~~~G~~~L~~~~~~~-~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-~~~~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKK-DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-GDSPAHKGEVTGLAVDGTNR 506 (910)
T ss_pred ccCcccccEEecCccccc-cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-ccCccccCceeEEEecCCCc
Confidence 66554211111111 111 2334589999999999999999999999999998432222 1235789999999998 67
Q ss_pred EEEEecCCCeEEEEecCCCcce--------------------------------------EEeccccCCCcCeEEEEeec
Q 018591 272 FLCSGSADKSIGIWKREAFGKL--------------------------------------CRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 272 ~l~~~~~dg~i~iw~~~~~~~~--------------------------------------~~~~~~~~h~~~v~~~~~~~ 313 (353)
.+++++.+|.+.+||....... ..++.+.||.+.|++++|||
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence 8999999999999998764310 23455789999999999999
Q ss_pred CCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
| |++|++++.|++|++||+.++.++.-
T Consensus 587 D----grWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 587 D----GRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred C----CcEEEEeecCCcEEEEeccCcceeee
Confidence 9 99999999999999999999887653
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=6.8e-31 Score=203.48 Aligned_cols=259 Identities=19% Similarity=0.201 Sum_probs=207.4
Q ss_pred CccCceEEEEE---CCcEEEEEeCCCcEEEEeCCCce----------eeEEeccCceeeEEEEEe---CCEEEEecCCCc
Q 018591 14 GHVGSVSSLAL---CGEFILSASQGKDIIVWQQPDLR----------MFTKFGHGDGSVKAVVTV---GNKVFTAHQDSR 77 (353)
Q Consensus 14 ~h~~~v~~~~~---~~~~l~s~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 77 (353)
-|.+.|+.+.+ +...+|+++..+.|.|||..+.. +-..+.+|...=++++|+ ...|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 48888888888 37789999999999999975421 223677888877889998 678999999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEE
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd 154 (353)
|++||+....... ....+...+.+|...|..++|++ +++++++.|+.+.|||
T Consensus 202 i~lwdi~~~~~~~-------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 202 ICLWDINAESKED-------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred EEEEeccccccCC-------------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence 9999998765210 00123556679999999999998 8999999999999999
Q ss_pred cC--CceeeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCe
Q 018591 155 VA--DLKCLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKW 228 (353)
Q Consensus 155 ~~--~~~~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 228 (353)
++ +.++.....+|.++|+|++|+ +..||+|+.|++|++||+|+.. .+...+.+|...+ ..+.|+|. ...
T Consensus 257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh~~e~H~dev-~~V~WSPh~etv 331 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLHTFEGHEDEV-FQVEWSPHNETV 331 (422)
T ss_pred cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCceeccCCCcce-EEEEeCCCCCce
Confidence 99 566777788999999999993 3489999999999999999887 3788899999887 99999996 568
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC 308 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 308 (353)
|++++.|+.+.+||+..-..... ++-.....+..+..-.||...|..
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~---------------------------------~eda~dgppEllF~HgGH~~kV~D 378 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQS---------------------------------PEDAEDGPPELLFIHGGHTAKVSD 378 (422)
T ss_pred eEecccCCcEEEEeccccccccC---------------------------------hhhhccCCcceeEEecCccccccc
Confidence 88999999999999875311000 111122334456667899999999
Q ss_pred EEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 309 LQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 309 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+.|+|.. -..++|+++|+.+.||+...
T Consensus 379 fsWnp~e---PW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 379 FSWNPNE---PWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccCCCCC---CeEEEEecCCceEEEeeccc
Confidence 9999983 46899999999999999873
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=1.6e-30 Score=187.64 Aligned_cols=250 Identities=20% Similarity=0.274 Sum_probs=208.6
Q ss_pred EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
+.+.+|...+.+++|+ |..|++|+.|+++++|+++... ..... ...+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~-------------------------~~~gh 63 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKEL-------------------------VYRGH 63 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----hhhhh-------------------------cccCC
Confidence 4567788999999998 9999999999999999998763 21111 12389
Q ss_pred CCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccc
Q 018591 128 ADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 128 ~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
.+.|-.++|+| +.+++++.|..|++||++++++...+....+.+.-... +++++++++.|..|.+.|.++.+
T Consensus 64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~---- 139 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYK---- 139 (313)
T ss_pred CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccc----
Confidence 99999999988 89999999999999999999999998776666654444 44599999999999999999876
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS 281 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~ 281 (353)
.....+.. ..+..++|+.++.+++.....|.|.|.....- ++...+..|+....|+.++ |+++|+|+.|-.
T Consensus 140 -~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL----kpv~si~AH~snCicI~f~p~GryfA~GsADAl 212 (313)
T KOG1407|consen 140 -IVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL----KPVQSIKAHPSNCICIEFDPDGRYFATGSADAL 212 (313)
T ss_pred -eeehhccc--ceeeeeeecCCCCEEEEecCCceEEEEecccc----ccccccccCCcceEEEEECCCCceEeeccccce
Confidence 33333222 22478889988888888888899999988765 7888889999998888776 999999999999
Q ss_pred EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
+.+||++..- +++.+..+.-+|+.+.|+.+ |++||+||+|..|-|=+++++..+.+.+-
T Consensus 213 vSLWD~~ELi---C~R~isRldwpVRTlSFS~d----g~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 213 VSLWDVDELI---CERCISRLDWPVRTLSFSHD----GRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred eeccChhHhh---hheeeccccCceEEEEeccC----cceeeccCccceEEeEecccCCeEEEeec
Confidence 9999998544 77788889999999999999 99999999999999999999988877663
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=6.6e-31 Score=187.81 Aligned_cols=251 Identities=20% Similarity=0.275 Sum_probs=198.5
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---eeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEE
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---RMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w 81 (353)
.-.+|.+.|..+..+ |++|||++.|++|+|+..... +++.++.+|+++|..++|. |++|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 345799999998876 999999999999999997653 5788999999999999996 8999999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~ 157 (353)
.-+++.- .. ...+..|...|++++|.| -.|++++.||.|.+.+.+.
T Consensus 86 ke~~g~w---~k---------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 86 KEENGRW---TK---------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred ecCCCch---hh---------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 9877641 11 112237999999999998 5789999999999999875
Q ss_pred c---eeeeeccccCcceEEEEEeC----------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591 158 L---KCLESIKAHDDAVNGLVASK----------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 158 ~---~~~~~~~~~~~~v~~i~~~~----------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
. ...+....|.-.|++++|.| ..|++|+.|..|+||+..+++ ......+++|.+.+ +
T Consensus 136 ~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---w~~e~~l~~H~dwV-R 211 (299)
T KOG1332|consen 136 SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---WKLERTLEGHKDWV-R 211 (299)
T ss_pred CCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---hhhhhhhhhcchhh-h
Confidence 4 23344578999999999922 259999999999999998864 23456689999987 9
Q ss_pred EEEEcCCC----CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591 219 SVVVSDDG----KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 219 ~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
.++|.|.- .++++++.||++.||..+.....++.. .+......+..++| .|+.|++++.|+.|.+|.-+...+
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t-ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT-LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc-ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 99999963 579999999999999887543333322 22224455555555 599999999999999998665544
Q ss_pred eEEe
Q 018591 293 LCRV 296 (353)
Q Consensus 293 ~~~~ 296 (353)
..++
T Consensus 291 w~~v 294 (299)
T KOG1332|consen 291 WEEV 294 (299)
T ss_pred EEEc
Confidence 4443
No 88
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.4e-28 Score=174.44 Aligned_cols=290 Identities=18% Similarity=0.272 Sum_probs=227.9
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---------------eeeEEeccCceeeEEEEEe--CC
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---------------RMFTKFGHGDGSVKAVVTV--GN 67 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~--~~ 67 (353)
+.+..|. .+.+|.+++|+ |.+.+.|+...+.||-..... -..+.-++|.+.|+|.+|+ |+
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 3444444 46789999997 889999999999998754321 1223447899999999998 99
Q ss_pred EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC------CeE
Q 018591 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------GLI 141 (353)
Q Consensus 68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l 141 (353)
.+++|+.|.+|++...+....... .+...+.-|.+.|..++|.. ..|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~---------------------------g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNAT---------------------------GHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred eEEecCCCceEEEEeccccccccc---------------------------CcceeeeecCCceeeeEEecCCCcCceEE
Confidence 999999999999987765431110 11222336999999999965 455
Q ss_pred EEe-cCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee------ccC
Q 018591 142 YSG-SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE------GHK 213 (353)
Q Consensus 142 ~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~ 213 (353)
+++ ..|..|++-|..+++..+.+.+|.+.|.++-- ++-++++|+.|.+|++||++-.. ....+. +-.
T Consensus 156 ~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLE 230 (350)
T ss_pred EecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCcc
Confidence 554 45778888899999999999999999998865 77799999999999999998765 333332 222
Q ss_pred CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591 214 DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
...|.+++..|.|++|++|-.|....+||++.+ ..++.+..|...+.|+.++ ..++++++.|..|++-|++..-
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 345699999999999999999999999999999 7888889999999998887 5699999999999999987531
Q ss_pred -ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 292 -KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 292 -~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
....+.....|...+..+.|.|. .-.+++.+.|.++.+|-+.
T Consensus 307 a~el~~~vv~ehkdk~i~~rwh~~----d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAIQCRWHPQ----DFSFISSSADKTATLWALN 349 (350)
T ss_pred hhcCceEEEEeccCceEEEEecCc----cceeeeccCcceEEEeccC
Confidence 11122334568899999999998 7889999999999999764
No 89
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.98 E-value=6e-30 Score=188.02 Aligned_cols=286 Identities=16% Similarity=0.236 Sum_probs=214.6
Q ss_pred eeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCce------e----eEE-----eccCceeeEEEEEe---CCEE
Q 018591 11 VLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLR------M----FTK-----FGHGDGSVKAVVTV---GNKV 69 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~------~----~~~-----~~~~~~~v~~~~~~---~~~l 69 (353)
.-+.|.+.|+++.++ |+++++|+.||.|.+||++... . ... -.+|.-.|..+.|- ...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 345688999999997 9999999999999999987532 1 111 13567788888875 6788
Q ss_pred EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEEe
Q 018591 70 FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYSG 144 (353)
Q Consensus 70 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~ 144 (353)
.+++.|.++++||.++.++ ...+ ...+.|.+-+++| -++++|
T Consensus 118 tssSFDhtlKVWDtnTlQ~-----a~~F----------------------------~me~~VYshamSp~a~sHcLiA~g 164 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-----AVDF----------------------------KMEGKVYSHAMSPMAMSHCLIAAG 164 (397)
T ss_pred ecccccceEEEeeccccee-----eEEe----------------------------ecCceeehhhcChhhhcceEEEEe
Confidence 9999999999999988762 1111 2344555556665 578889
Q ss_pred cCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCc----------ccccceeeeec
Q 018591 145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKS----------HCHSLKGILEG 211 (353)
Q Consensus 145 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~ 211 (353)
..|-.|++-|+.+|.+...+.+|.+.|.++.|++. .|++|+.||.|++||++.... ...+....-..
T Consensus 165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence 99999999999999999999999999999999554 789999999999999986521 11112222344
Q ss_pred cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce---eEEEEEEcCcEEEEecCCCeEEEEecC
Q 018591 212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM---AVLCVCLVGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~~dg~i~iw~~~ 288 (353)
|.+.+ ..++|+.++.++++.+.|..+++|+...+....+.......... .+.--+.+...++---.++.+.++++-
T Consensus 245 h~gkv-ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~ 323 (397)
T KOG4283|consen 245 HYGKV-NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL 323 (397)
T ss_pred cccee-eeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc
Confidence 55554 99999999999999999999999999887543332222111111 111112223333333456889999999
Q ss_pred CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
.+. .+..+..|-..|.+.++.|+ -+.+.+|+.|+.|..|-..
T Consensus 324 sgs---~ir~l~~h~k~i~c~~~~~~----fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 324 EGS---FVRRLSTHLKRINCAAYRPD----FEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred Cce---EEEeeecccceeeEEeecCc----hhhhhccccCCcccccccc
Confidence 888 67778889889999999999 8899999999999999864
No 90
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=2.3e-29 Score=211.74 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=153.4
Q ss_pred eeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce--------eeeeccccCcceEEEEEeCC---eEEEEcCCCc
Q 018591 124 WIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK--------CLESIKAHDDAVNGLVASKG---IVYSASADGK 189 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~ 189 (353)
+.+|.+.|.+++|+| ++|++|+.|+.|++||+.++. ++..+.+|...|.+++|++. .+++++.|++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 348999999999998 689999999999999997532 34467889999999999553 5678999999
Q ss_pred EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE--E--
Q 018591 190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--C-- 265 (353)
Q Consensus 190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~-- 265 (353)
|++||+++++ ....+. +.. .|.+++|+|+|.+|++++.|+.|++||++++ .....+.+|...+. .
T Consensus 150 IrIWDl~tg~-----~~~~i~-~~~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 150 VNIWDIENEK-----RAFQIN-MPK-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred EEEEECCCCc-----EEEEEe-cCC-cEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEEEEEecccCCceeEEEE
Confidence 9999999886 333343 333 3599999999999999999999999999987 44455666765432 1
Q ss_pred ---EEEcCcEEEEecCCC----eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 266 ---VCLVGEFLCSGSADK----SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 266 ---~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+.+++.+|++++.|+ .|+|||+++...+.....+..+.+.+......++ +.++++|+.|+.|++|++..
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t----g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST----GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC----CCEEEEEECCCeEEEEEccC
Confidence 224677888877664 7999999965443333334444454444444455 88999999999999999976
Q ss_pred CC
Q 018591 339 QS 340 (353)
Q Consensus 339 ~~ 340 (353)
+.
T Consensus 295 ~~ 296 (568)
T PTZ00420 295 GS 296 (568)
T ss_pred Cc
Confidence 53
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-28 Score=182.26 Aligned_cols=255 Identities=16% Similarity=0.168 Sum_probs=196.4
Q ss_pred ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
.+..+.+..-.+.|.++.|+ |..+++++.|.++++||...+. .+.++.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-----~~~ti~------------------------- 53 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-----QVKTIN------------------------- 53 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-----eeeEee-------------------------
Confidence 34445555567899999998 8999999999999999998876 222221
Q ss_pred eeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCC
Q 018591 124 WIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKEL 197 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~ 197 (353)
.+.-.+..+.|.. +.++.++. |.+|+..++.+.+.++.+.+|...|++++.+ ++.+++++.|++|++||++.
T Consensus 54 --skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 54 --SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV 131 (311)
T ss_pred --cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence 3334555566654 66666666 8899999999999999999999999999994 35999999999999999997
Q ss_pred CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc-cc--ceeEEEEEEcCcEEE
Q 018591 198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK-AH--EMAVLCVCLVGEFLC 274 (353)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~--~~~v~~~~~~~~~l~ 274 (353)
.+ +...+..... ..++|+|+|-++|++...+.|++||++.-.........+. .. +-.-..++++|++|+
T Consensus 132 ~~-----cqg~l~~~~~---pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 132 KK-----CQGLLNLSGR---PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred CC-----CceEEecCCC---cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 76 5555544443 5689999999999999888999999987532211111222 22 334456666799999
Q ss_pred EecCCCeEEEEecCCCcceEEeccccCCCcC---eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 275 SGSADKSIGIWKREAFGKLCRVGAITGHEGP---VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
.+...+.+++.|.-+|. .+..+.++... -....|+|| ++++++|+.||+|.+|+++++..+.....
T Consensus 204 lsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPd----s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 204 LSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPD----SKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred EEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeEEECCC----CcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 99999999999999988 44444444332 267789999 99999999999999999999988876654
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-30 Score=185.63 Aligned_cols=249 Identities=19% Similarity=0.270 Sum_probs=198.8
Q ss_pred ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc
Q 018591 53 GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS 130 (353)
Q Consensus 53 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (353)
..|...|..+..+ |.+|++++.|++|+|+..+.+.. ..++ ..+.+|.++
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--s~ll---------------------------~~L~Gh~GP 58 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--SKLL---------------------------AELTGHSGP 58 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--ceee---------------------------eEecCCCCC
Confidence 4577777776555 99999999999999999987653 1122 233489999
Q ss_pred eEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCc
Q 018591 131 ISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 131 i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~ 200 (353)
|..++|.. ..|++++.||.|.||.-.+++ .......|...|++++|.+. .|++++.||.|.+.+.+...
T Consensus 59 Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g- 137 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG- 137 (299)
T ss_pred eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-
Confidence 99999965 899999999999999987764 34455789999999999433 89999999999999987662
Q ss_pred ccccceeeeeccCCceeeEEEEcCC---C-----------CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSDD---G-----------KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV 266 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 266 (353)
..........|.-.+ ++++|.|- | +.|++|+.|..|+||+.... .+.....+.+|...+..+
T Consensus 138 -~w~t~ki~~aH~~Gv-nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 138 -GWTTSKIVFAHEIGV-NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDV 213 (299)
T ss_pred -Cccchhhhhcccccc-ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhh
Confidence 112344556677666 99999985 4 56999999999999999887 566667789999999888
Q ss_pred EEc------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 267 CLV------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 267 ~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
++. ..+||+++.||+|.||..+..........++.....+..+.||+. |++|+.++.|+.|.+|.-...
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s----Gn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS----GNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc----ccEEEEecCCcEEEEEEeCCC
Confidence 775 348999999999999988754333344445556788999999999 999999999999999975544
No 93
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.5e-29 Score=210.62 Aligned_cols=249 Identities=14% Similarity=0.159 Sum_probs=181.7
Q ss_pred EEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--
Q 018591 61 AVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-- 138 (353)
Q Consensus 61 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 138 (353)
..+|++..+++++.+.....|+...+. .+..+.... ........+.+|.+.|.+++|+|
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~-----~v~~~~~~G--------------~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGST-----AVLKHTDYG--------------KLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCce-----EEeeccccc--------------cCCCCCceEeCCCCCEEEEEEcCCC
Confidence 344556778888888888888865542 110000000 00011234558999999999998
Q ss_pred -CeEEEecCCCcEEEEEcCCc-------eeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 139 -GLIYSGSWDKTLKVWRVADL-------KCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 139 -~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
++|++|+.|+.|++||+.++ +++..+.+|...|.+++|++ +.|++++.|++|++||+++++ ...
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-----~~~ 162 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-----AVE 162 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----EEE
Confidence 68999999999999999764 35677889999999999943 489999999999999999886 566
Q ss_pred eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE---EEEEEcCcEEEEec----CCC
Q 018591 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV---LCVCLVGEFLCSGS----ADK 280 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~----~dg 280 (353)
.+..|...+ .+++|+|++.+|++++.|+.|++||++++ .....+..|.... ..+.+++..+++++ .|+
T Consensus 163 ~l~~h~~~V-~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr 237 (493)
T PTZ00421 163 VIKCHSDQI-TSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR 237 (493)
T ss_pred EEcCCCCce-EEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence 777787765 99999999999999999999999999987 3444555565432 22333455665543 479
Q ss_pred eEEEEecCCCcceEEeccccC-CCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcCCCCCccc
Q 018591 281 SIGIWKREAFGKLCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 281 ~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~ 344 (353)
.|++||+++...+ +..... +...+....|+++ +.+|++++ .|+.|++||+.+++....
T Consensus 238 ~VklWDlr~~~~p--~~~~~~d~~~~~~~~~~d~d----~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 238 QIMLWDTRKMASP--YSTVDLDQSSALFIPFFDED----TNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred eEEEEeCCCCCCc--eeEeccCCCCceEEEEEcCC----CCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 9999999876542 222222 3345666778998 88888887 599999999998876543
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=187.43 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=208.5
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee------EEeccCceeeEEEEEe---CCEEEEecCCCc
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF------TKFGHGDGSVKAVVTV---GNKVFTAHQDSR 77 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~------~~~~~~~~~v~~~~~~---~~~l~s~~~dg~ 77 (353)
+.+|+||.+.|++++|+ |++|+|++.|++|++|++.+.+.. ..++ -+--+.+.|. ...++++-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCE
Confidence 46789999999999995 999999999999999998764321 1111 1233455665 456777777779
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
+++|.+...+........ .+. .+...-..|+..+..+-... .++++++.|..|.+|++
T Consensus 157 l~vyk~~K~~dG~~~~~~-v~~-------------------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l 216 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHF-VHI-------------------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL 216 (420)
T ss_pred EEEEEeeecccCCCCccc-ccc-------------------cccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence 999988765432111100 000 00111124666676666655 89999999999999999
Q ss_pred CCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCC---CCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 156 ADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKE---LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
+ |+.+..+......-+..+.+|+ ++++++..-.+++|.+- ++..+.......+.+|...+ ..++|+++...++
T Consensus 217 k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV-~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 217 K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV-LAAAFSNSSTRAV 294 (420)
T ss_pred C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe-eeeeeCCCcceeE
Confidence 7 8888888766666666666443 88888888899999863 33323333455788999887 9999999999999
Q ss_pred eecCCCcEEEeeccccccc---eeeeeec------cccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591 231 GGGSDGFVMGWEGNVEIVR---WKLACET------KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~~~~---~~~~~~~------~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 301 (353)
+.+.||++++||..-.-.. .+..... .+...--..++|+|+.|+.+.. ..+++|..++++....+ -..
T Consensus 295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~--e~~ 371 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPEL--EDI 371 (420)
T ss_pred EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhH--HHh
Confidence 9999999999998653111 1111111 1122234677888988887654 56999999988754333 246
Q ss_pred CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
|...|.+++|+++ |+++++++ |..+++..
T Consensus 372 h~~~Is~is~~~~----g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSSD----GKYIATCG-DRYVRVIR 400 (420)
T ss_pred hcCceeeEEecCC----CcEEeeec-ceeeeeec
Confidence 8999999999999 99999997 66788876
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-29 Score=204.31 Aligned_cols=244 Identities=20% Similarity=0.238 Sum_probs=207.7
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEeCCEEEEecCCCcEEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTVGNKVFTAHQDSRIRVW 81 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~~w 81 (353)
+++.......+.+.|+++.|+ |++|+.|..+|.|.|||..+.+.+..+.+ |...|.+++|.+..+.+|+.|+.|..+
T Consensus 206 s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 206 SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNH 285 (484)
T ss_pred CCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEE
Confidence 344444444558999999996 99999999999999999999999999988 999999999999999999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
|++..+.... .+.+|...|..+.|++ .++++|+.|+.+.|||....+
T Consensus 286 dvR~~~~~~~-------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 286 DVRISQHVVS-------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred EEecchhhhh-------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 9987762111 1338999999999999 899999999999999998889
Q ss_pred eeeeccccCcceEEEEE---eCCeEEEEc--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe--e
Q 018591 160 CLESIKAHDDAVNGLVA---SKGIVYSAS--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG--G 232 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~---~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 232 (353)
+...+..|...|.+++| ..+.||+|+ .|+.|++||..++. .+... ..+..|.++.|++..+.|++ |
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----~i~~v--dtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-----RIDSV--DTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-----Eeccc--ccCCceeeEEEcCCCCEEEEecC
Confidence 99999999999999999 456888875 49999999999887 33333 23344699999999877766 4
Q ss_pred cCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591 233 GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 233 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
..++.|.||+..+. +....+.+|...|..++. +|..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps~----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSM----KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEecccc----ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 56778999999886 778888999999988766 5899999999999999998764
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=196.81 Aligned_cols=262 Identities=26% Similarity=0.359 Sum_probs=209.2
Q ss_pred eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
+..+..|.-++.+++++ +.+.++++.+|+|.-|++.++....+..-.. .... ..+... ...+ .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k-----~~~~~~--k~~r--~~ 200 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLK-----SHGNPL--KESR--KG 200 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-----hhhh-----hccCCC--Cccc--cc
Confidence 56677888999999988 7799999999999999998886321111110 0000 000000 0011 37
Q ss_pred cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591 127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
|...+.+++.++ .+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++| ..+.+++++.|+++++|+++...
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--- 277 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--- 277 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---
Confidence 999999999999 89999999999999999999999999999999999999 45599999999999999999887
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-cCcEEEEecCCCe
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGSADKS 281 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~ 281 (353)
...++.+|++.+ ..+....-++.+.+|+.|+++++|++... ....+.++...+-|+++ +...+++|+.||.
T Consensus 278 --~vetlyGHqd~v-~~IdaL~reR~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 278 --YVETLYGHQDGV-LGIDALSRERCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFINDEHFVSGSDNGS 349 (479)
T ss_pred --HHHHHhCCccce-eeechhcccceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEecccceeeccCCce
Confidence 788899999887 88888888888888999999999999554 34455677888888887 6889999999999
Q ss_pred EEEEecCCCcceEEecccc---------CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 282 IGIWKREAFGKLCRVGAIT---------GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|.+|++...+.+.....-. .+..+|++++..|. .+++++|+.+|.|++|.++++
T Consensus 350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~----sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG----SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEEeeecccCceeEeeccccccCCccccccccceeeeEeccc----CceEEecCCCCceEEEEecCC
Confidence 9999998866432221111 12238999999999 899999999999999999987
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.2e-29 Score=184.62 Aligned_cols=256 Identities=16% Similarity=0.185 Sum_probs=191.1
Q ss_pred ccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC
Q 018591 53 GHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD 129 (353)
Q Consensus 53 ~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (353)
......|.+|+|+ ...+++++.||+||+|+++.... ... +....|.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----~~~--------------------------ka~~~~~~ 73 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----LVP--------------------------KAQQSHDG 73 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCc----ccc--------------------------hhhhccCC
Confidence 3457789999998 46677999999999999987421 100 11127999
Q ss_pred ceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--C--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591 130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--G--IVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~--~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
+|.+++|+. ..+++|+.|+.+++||+.++ .+..+..|..+|.++.|-+ + .|++|+.|.+|++||.+...
T Consensus 74 PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~---- 148 (347)
T KOG0647|consen 74 PVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN---- 148 (347)
T ss_pred CeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC----
Confidence 999999998 89999999999999999998 5566778999999999922 2 78999999999999999876
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEE
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIG 283 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 283 (353)
+...+.-.. .+.+.+-...+++++..++.|.+|+++.+..+.+.....-.......++..+....+.|+-+|.+.
T Consensus 149 -pv~t~~LPe----RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 -PVATLQLPE----RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -eeeeeeccc----eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 444444433 233333335578889999999999998875544444333333444455555666679999999999
Q ss_pred EEecCCCcceEEeccccCCCc---------CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc-CCCcccC
Q 018591 284 IWKREAFGKLCRVGAITGHEG---------PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE-EKSIISC 353 (353)
Q Consensus 284 iw~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~c 353 (353)
|..++.+.+ ..-..++-|.. +|++|+|+|. ...|+|+|.||+..+||-.....+.+.+ ....+.|
T Consensus 224 iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~----hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 224 IQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV----HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred EEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecc----cceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 999987532 12233444442 5888999998 8899999999999999999888887755 3444443
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.1e-29 Score=205.15 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=217.9
Q ss_pred eeeeCccCceEEEEE---C----------CcEEEEEeCCCcEEEEeCCCceeeEEe------------------------
Q 018591 10 AVLSGHVGSVSSLAL---C----------GEFILSASQGKDIIVWQQPDLRMFTKF------------------------ 52 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~---~----------~~~l~s~~~dg~v~vwd~~~~~~~~~~------------------------ 52 (353)
..+-.|...|+.+.- + ..-++|++.|++||+||+..+..-..+
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 455568888888864 1 346899999999999998753110000
Q ss_pred -------------ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591 53 -------------GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR 117 (353)
Q Consensus 53 -------------~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (353)
-.....+.+++.+ +++|++|..-|.+++|++...+.
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------------- 493 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------------- 493 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-----------------------------
Confidence 0123467888887 89999999999999999977652
Q ss_pred ccceeeeeecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE--eC--CeEEEEcCC
Q 018591 118 RHHKRLWIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA--SK--GIVYSASAD 187 (353)
Q Consensus 118 ~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~--~~--~~l~~~~~d 187 (353)
......|..+|.|+.|+. .+|++++.|..|++||... ..+++++.+|...|+++.| ++ -.+++++.|
T Consensus 494 ---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 494 ---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred ---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 111227999999999986 7899999999999999864 5677889999999999999 33 288999999
Q ss_pred CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE--E
Q 018591 188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--C 265 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~ 265 (353)
..|.+--.+...... ...+....-....+..++..|+.+++++++.|..|+||+++.++....+ ..-..|.+... .
T Consensus 571 ksimFr~~qk~~~g~-~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F-Kgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGR-LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF-KGSRDHEGDLIKVI 648 (1080)
T ss_pred hhhheehhccccCce-eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee-cccccCCCceEEEE
Confidence 877653332111000 0111111112233588999999999999999999999999998433222 22234444444 4
Q ss_pred EEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 266 VCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 266 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+.|+|.|+++...|.++.++|..+++ ++..+.||...|+.+.|.+| -+.|++.+.||.|.||.+..
T Consensus 649 lDPSgiY~atScsdktl~~~Df~sgE---cvA~m~GHsE~VTG~kF~nD----CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 649 LDPSGIYLATSCSDKTLCFVDFVSGE---CVAQMTGHSEAVTGVKFLND----CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ECCCccEEEEeecCCceEEEEeccch---hhhhhcCcchheeeeeeccc----chhheeecCCceEEEEECch
Confidence 45679999999999999999999998 89999999999999999999 99999999999999999875
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.1e-29 Score=193.32 Aligned_cols=248 Identities=19% Similarity=0.229 Sum_probs=206.5
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRI 78 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 78 (353)
.++.+.+.+|+||+..|+.+.|+ ...+++++.|-.|+||.............|..+|+.+... ++||++++.||+.
T Consensus 248 ~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 248 KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW 327 (506)
T ss_pred cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence 46788899999999999999997 6789999999999999998888888889999999999887 9999999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~ 156 (353)
.+.|++++..-...... ...-.+++..|+| ..+.+|..||.|++||+.
T Consensus 328 ~Fsd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred EEEEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 99999887621111000 1223589999999 677889999999999999
Q ss_pred CceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591 157 DLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS 234 (353)
Q Consensus 157 ~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 234 (353)
++..+..|.+|.++|..+.|++| +|++++.|+.|++||++..+ ....+.......+.++.|.+.|.+|+.++.
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEEEcCCCCeEEeecc
Confidence 99999999999999999999444 89999999999999999887 555555555545699999999999999977
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~ 287 (353)
|=.|++++ .....|.....+..|.+...++.+. .+++++++.|..++++.+
T Consensus 453 ~l~Vy~~~--k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 DLQVYICK--KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEEEe--cccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 75555554 4444677888888888888888885 789999999999888764
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=188.67 Aligned_cols=251 Identities=22% Similarity=0.321 Sum_probs=209.4
Q ss_pred CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe------CCCc---------------------------
Q 018591 2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ------QPDL--------------------------- 46 (353)
Q Consensus 2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd------~~~~--------------------------- 46 (353)
.+++++++.++.||.+.|++++|+ +.++++++.|++-.||. +...
T Consensus 176 s~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~ 255 (481)
T KOG0300|consen 176 SLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK 255 (481)
T ss_pred eeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc
Confidence 357899999999999999999996 88999999999999997 2110
Q ss_pred -------eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591 47 -------RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR 117 (353)
Q Consensus 47 -------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (353)
.++..+.+|.+.|.+..|- ++.+++++.|.+..+||+++++ .+
T Consensus 256 sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-----~v----------------------- 307 (481)
T KOG0300|consen 256 SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-----VV----------------------- 307 (481)
T ss_pred cCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-----ee-----------------------
Confidence 1455677888889888886 8899999999999999999987 33
Q ss_pred ccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEE
Q 018591 118 RHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAW 193 (353)
Q Consensus 118 ~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iw 193 (353)
..+.+|..+.+.++-+| .++++++.|.+.++||.+. -..+..|++|...|++..| .++.+++|+.|.+|++|
T Consensus 308 ----~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvW 383 (481)
T KOG0300|consen 308 ----NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVW 383 (481)
T ss_pred ----ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEe
Confidence 33348999999999999 7889999999999999974 3456788999999999999 67799999999999999
Q ss_pred eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC---
Q 018591 194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG--- 270 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 270 (353)
|+++.+ .++..+... .+++.++.+..+..++.-..+..|++||++.......+.....+|..-++|.+|..
T Consensus 384 dLrNMR----splATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 384 DLRNMR----SPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eecccc----CcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence 999876 344444433 33589999999999999999999999999987554445556678999999999963
Q ss_pred -cEEEEecCCCeEEEEecCCC
Q 018591 271 -EFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 271 -~~l~~~~~dg~i~iw~~~~~ 290 (353)
.-|++++.|..+.-|++...
T Consensus 458 ~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccccceeeeeEeccc
Confidence 35788999999999998754
No 101
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-28 Score=197.76 Aligned_cols=311 Identities=17% Similarity=0.211 Sum_probs=229.4
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w 81 (353)
.+-..++||++.|.+|..+ |.+|++|+.||+|+||.+.+|.++.++.. .+.|.+++|+ ...++++.....+.+-
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3456789999999999996 99999999999999999999999998876 5689999998 2334444444456666
Q ss_pred EcccCccc----eeEEeeccccccc---eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC---CCc
Q 018591 82 KVSRSSEN----VFRLVDTLPTTKD---YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW---DKT 149 (353)
Q Consensus 82 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~---dg~ 149 (353)
+..-+... ...++...+.... .......... .......++...|...|..+.|+. ++|++... ...
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~--~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASL--DELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhh--hhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 54433110 1111111111111 0111111100 011122566778999999999998 88887654 357
Q ss_pred EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591 150 LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 227 (353)
|.|.++.......-|+...+.|.++.|++. +|++++. ..|++||+.... +...+...... +..++++|.|.
T Consensus 548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe-----lvKkL~tg~kw-iS~msihp~GD 620 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE-----LVKKLLTGSKW-ISSMSIHPNGD 620 (733)
T ss_pred EEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH-----HHHHHhcCCee-eeeeeecCCCC
Confidence 899999877777777677889999999555 5655554 689999998765 44444444444 49999999999
Q ss_pred eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc--EEEEecCCCeEEEEe------cCCCcceEEeccc
Q 018591 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWK------REAFGKLCRVGAI 299 (353)
Q Consensus 228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~iw~------~~~~~~~~~~~~~ 299 (353)
.|+.|+.|+.+..||+.-.. ++...+..|...+++++++++ ++++|+.||++.||- +.....+.++..+
T Consensus 621 nli~gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred eEEEecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 99999999999999998764 566778889999999999854 799999999999984 3223345677888
Q ss_pred cCCCcC----eEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 300 TGHEGP----VKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 300 ~~h~~~----v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
.+|... |....|+|. ..+|++++.||+|++|
T Consensus 698 ~gH~~~~~~gVLd~~wHP~----qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPR----QPWLFSAGADGTIRLF 732 (733)
T ss_pred cCceeecccceEeecccCC----CceEEecCCCceEEee
Confidence 999876 999999999 8899999999999998
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=6.4e-30 Score=195.79 Aligned_cols=238 Identities=20% Similarity=0.335 Sum_probs=193.7
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-C-CEEEEecCCCcEEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-G-NKVFTAHQDSRIRVW 81 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~-~~l~s~~~dg~i~~w 81 (353)
...+.+|.|-.++|+++.|+ +..+++++.|+.+++|++.+.+...++.+|+..|+++.|. + ..+++|+.|.+|+.|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 34667888888999999996 8899999999999999999999999999999999999997 3 349999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL 161 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 161 (353)
|+.... +..+. -....+..|...+..+++|-.|+.|++||.++..+.
T Consensus 289 Dl~k~~-----C~kt~----------------------------l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~ 335 (459)
T KOG0288|consen 289 DLQKAY-----CSKTV----------------------------LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKT 335 (459)
T ss_pred hhhhhh-----eeccc----------------------------cccccccceEecceeeeecccccceEEEeccCCcee
Confidence 998754 32222 122345566666778899999999999999999999
Q ss_pred eeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---CceeeEEEEcCCCCeEEeecCCC
Q 018591 162 ESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---DVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 162 ~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
.....+. .|+++.. ....+++++.|.++.+.|+++.+ +...+.... ..-.+.+.|||++.|+++|+.||
T Consensus 336 ~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e-----I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 336 RSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE-----IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred eEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc-----EEEEeeccccccccccceeEECCCCceeeeccCCC
Confidence 9987754 9999998 33388888999999999999887 444443321 12248899999999999999999
Q ss_pred cEEEeeccccccceeeeeecccc--ceeEEEEEEc--CcEEEEecCCCeEEEEe
Q 018591 237 FVMGWEGNVEIVRWKLACETKAH--EMAVLCVCLV--GEFLCSGSADKSIGIWK 286 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~~~~~dg~i~iw~ 286 (353)
.|+||++.+++ +...+... ...|++++|+ |..|++++.++.+.+|.
T Consensus 410 sv~iW~v~tgK----lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 410 SVYIWSVFTGK----LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cEEEEEccCce----EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999984 33333332 2358888886 89999999999999993
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2e-29 Score=198.56 Aligned_cols=265 Identities=20% Similarity=0.249 Sum_probs=196.1
Q ss_pred eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591 48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
....+.+|+..|.+++++ |..|++|+.|-+|++||+......... ...+ ..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l--------------------------~P 211 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQL--------------------------QP 211 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hhcc--------------------------Cc
Confidence 345678899999999998 899999999999999999865421111 1111 11
Q ss_pred ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee------------ccccCcceEEEEEeC---CeEEEEcCCC
Q 018591 126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES------------IKAHDDAVNGLVASK---GIVYSASADG 188 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~~v~~i~~~~---~~l~~~~~dg 188 (353)
.....|+++.|++ +.|++.+.....+++|-.-.+.... -++|...++|.+|+| +.+++++.||
T Consensus 212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 4556789999998 8888888888999999543332222 257889999999944 3899999999
Q ss_pred cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce--eEEEE
Q 018591 189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM--AVLCV 266 (353)
Q Consensus 189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~ 266 (353)
++|+||+...+.....+.....+....++++++|+|++++||+|+.||.|.+|+....... ........|.. .++|+
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSI 370 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEE
Confidence 9999999887744433444444444555699999999999999999999999998554221 12223344554 66666
Q ss_pred EE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCC--CcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEc
Q 018591 267 CL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWV 336 (353)
Q Consensus 267 ~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~ 336 (353)
.| +|++|++-+.|+++++||++..+++ +....+- .-+-+.++|||+ .+++++|+. .|.+.+||.
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkp--L~~~tgL~t~~~~tdc~FSPd----~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKP--LNVRTGLPTPFPGTDCCFSPD----DKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccc--hhhhcCCCccCCCCccccCCC----ceEEEecccccCCCCCceEEEEec
Confidence 66 5999999999999999999987763 3333332 335688999999 899999864 578999998
Q ss_pred CCCCCccccc
Q 018591 337 SKQSSTSDSE 346 (353)
Q Consensus 337 ~~~~~~~~~~ 346 (353)
.+.+.++.+.
T Consensus 445 ~t~d~v~ki~ 454 (641)
T KOG0772|consen 445 MTLDTVYKID 454 (641)
T ss_pred cceeeEEEec
Confidence 8877666543
No 104
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-29 Score=190.72 Aligned_cols=255 Identities=18% Similarity=0.229 Sum_probs=204.3
Q ss_pred eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
+..+.+..|...|+.+.|+ |++||+++.|.+..+|++..... +++.. .+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~---------------------------tl 265 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKK---------------------------TL 265 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeee---------------------------ee
Confidence 3445678899999999998 99999999999999999876653 33333 33
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc-cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCC
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA-HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~ 199 (353)
.+|..+|.-+.|+| +++++++.|..+.+||..++.+...+.. +...+.+.+| +++ .+++|+.|+++..||+....
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 48999999999999 8999999999999999999998887743 4678999999 444 89999999999999998663
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEE--EEEcCcEEEEec
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLC--VCLVGEFLCSGS 277 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~ 277 (353)
...+++-....|.+++.++||+++++.+.|..|++|+.+...... ......++++ ++-+++++++--
T Consensus 346 ------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 346 ------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred ------hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEc
Confidence 556666666667999999999999999999999999988752211 1222334444 455688999999
Q ss_pred CCCeEEEEecCCCcceEEeccccCCCcC--eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITGHEGP--VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
.+..+++||++... .+..+.||... |-.-+|.-. +..++++||+|+.|+||+..+++.+.....
T Consensus 415 ~~qei~LWDl~e~~---lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 415 QDQEIHLWDLEENK---LVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred ccCeeEEeecchhh---HHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEccCCceeEeecC
Confidence 99999999999665 67778888764 333345433 158999999999999999999999887653
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=7.3e-29 Score=201.86 Aligned_cols=245 Identities=21% Similarity=0.308 Sum_probs=205.7
Q ss_pred ceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
-++.+.+.+|...|..++.. +..++++|+||++++|+-..++ .+. ...+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~-----~l~-------------------------~~~~ 53 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQ-----YLE-------------------------THAF 53 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcc-----ccc-------------------------ceec
Confidence 35667889999999998887 6779999999999999986654 111 1112
Q ss_pred eecCCceEE-EEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCC
Q 018591 125 IEHADSISC-LTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 125 ~~~~~~i~~-~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~ 199 (353)
.+|.+-|.. +++.+ ..+++|+.|..+.+|...+..+...+++|...|.+++. .+..+++||.|.++++|....
T Consensus 54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~-- 131 (745)
T KOG0301|consen 54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE-- 131 (745)
T ss_pred ccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--
Confidence 256666666 77765 67999999999999999999999999999999999997 666799999999999998765
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecC
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSA 278 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~ 278 (353)
+...+.+|+..+ .+++.-|++ .+++|+.|.+|++|.-. +....+.+|...|..+..- +..+++++.
T Consensus 132 -----l~~~l~gH~asV-WAv~~l~e~-~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~~~flScsN 198 (745)
T KOG0301|consen 132 -----LVYSLQGHTASV-WAVASLPEN-TYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDDSHFLSCSN 198 (745)
T ss_pred -----hhcccCCcchhe-eeeeecCCC-cEEeccCcceeeeccCC------chhhhhccchhheeeeEEecCCCeEeecC
Confidence 445689999887 899988887 78999999999999873 5677889999999999884 669999999
Q ss_pred CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
||.|++|++ +++ .+.++.+|+.-|.++...++ +..++++++|++++||+.. .+.+.+
T Consensus 199 Dg~Ir~w~~-~ge---~l~~~~ghtn~vYsis~~~~----~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 199 DGSIRLWDL-DGE---VLLEMHGHTNFVYSISMALS----DGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred CceEEEEec-cCc---eeeeeeccceEEEEEEecCC----CCeEEEecCCceEEEeecC--ceEEEE
Confidence 999999999 445 78888999999999997777 7899999999999999987 444433
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=192.86 Aligned_cols=239 Identities=17% Similarity=0.286 Sum_probs=191.1
Q ss_pred eeeeeCccCceEEEEE--CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEc
Q 018591 9 LAVLSGHVGSVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~ 83 (353)
.+++.--.+.|+++.| +|++||+|...|.|+|+|..+...+..+..|+.+|..+.|+ +..+++|+.|+.+++||+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 3344445678999999 49999999999999999988877888999999999999987 678899999999999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc-e
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL-K 159 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~-~ 159 (353)
.+... .. .+.+|++.|.|.+++| ..+++|+.||.|++||++.. .
T Consensus 141 s~a~v-----~~---------------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 141 STAYV-----QA---------------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS 188 (487)
T ss_pred CCcEE-----EE---------------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence 87651 11 1228999999999999 58999999999999999987 5
Q ss_pred eeeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 160 CLESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
.+.++ .|..+|..+.+ +++ .+++++ ...+++||+.++. ........|...+ +|+.+..++..|++++-|+.
T Consensus 189 ~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~----qll~~~~~H~KtV-TcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 189 RVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGG----QLLTSMFNHNKTV-TCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred eeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCc----eehhhhhcccceE-EEEEeecCCceEeecccccc
Confidence 66666 58999999999 554 555555 5689999999766 2444555577765 99999999999999999999
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCc
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
+++||+.+- +...... .++++.+++ ++++.++.|..||.+.+=+....+
T Consensus 262 VKVfd~t~~----Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 262 VKVFDTTNY----KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred eEEEEccce----EEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 999997654 4444333 355666554 457999999999988877554433
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=202.93 Aligned_cols=304 Identities=22% Similarity=0.294 Sum_probs=228.5
Q ss_pred eeeeeeCccCceEEEEE--CCcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEE
Q 018591 8 SLAVLSGHVGSVSSLAL--CGEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRV 80 (353)
Q Consensus 8 ~~~~l~~h~~~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~ 80 (353)
.+..++.|.+.|+.++. +++.|+++|.|-+|++|+...+ -+..++..|...|.|+++. ...+++||-|+.|.+
T Consensus 65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 47788999999999988 3889999999999999998876 5778889999999999993 678999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~ 158 (353)
||++++... .+..+..... ...-.++..+|.+++.++ ..+++|+..+.+++||.++.
T Consensus 145 WDin~~~~~---l~~s~n~~t~------------------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 145 WDINTGTAT---LVASFNNVTV------------------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred EEccCcchh---hhhhcccccc------------------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 999987531 1111111000 000117889999999999 58999999999999999999
Q ss_pred eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
+.+..+++|...|.++..++ ..+++++.||+|++||+...+ ++..+..|...+ .++..+|+-..+++|+.||
T Consensus 204 ~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr-----Cl~T~~vH~e~V-WaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 204 KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR-----CLATYIVHKEGV-WALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc-----eeeeEEeccCce-EEEeeCCCcceEEecCCCC
Confidence 99999999999999999933 399999999999999999887 888899999985 9999999999999999999
Q ss_pred cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCC------------
Q 018591 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGH------------ 302 (353)
Q Consensus 237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h------------ 302 (353)
.|..=|+++.. ....++. ...++..+..+ .+-+-+++.|+.|+-|...-.-.+..-..+..+
T Consensus 278 ~i~~Tdl~n~~-~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~ 353 (735)
T KOG0308|consen 278 NIYRTDLRNPA-KSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLT 353 (735)
T ss_pred cEEecccCCch-hheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcccccc
Confidence 99999998852 1122222 12233333332 334467778888888875432111000000000
Q ss_pred ---------CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 303 ---------EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 303 ---------~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
..+|..-+...| .+.++|=...|.+.+||+-....+.++.
T Consensus 354 ~tp~~vi~Gg~ai~k~~mL~d----kRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 354 NTPDSVIPGGAAIKKHAMLND----KRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCCceeccCchhhhhhhhhcC----cceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 112333344444 7899999999999999998776665554
No 108
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-27 Score=175.33 Aligned_cols=262 Identities=17% Similarity=0.223 Sum_probs=194.9
Q ss_pred eCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC----ceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEEE
Q 018591 13 SGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD----LRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 13 ~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w~ 82 (353)
.+|.+-|.++.|+ |+.+|+++.|++|+|||..+ ..+....+.|.+.|..+.|. |+.+++++.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999997 99999999999999999643 34667788999999999996 89999999999999998
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCc
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~ 158 (353)
-......... ..-.....+......|+.+.|.| -.+++++.||.++||+....
T Consensus 90 E~~~~~~~~~-----------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 90 EQEKSEEAHG-----------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eccccccccc-----------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 6322210000 00011223336778999999999 57899999999999987542
Q ss_pred ------eeeeecc-------ccCcceEEEEEeCC-----eEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCc
Q 018591 159 ------KCLESIK-------AHDDAVNGLVASKG-----IVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDV 215 (353)
Q Consensus 159 ------~~~~~~~-------~~~~~v~~i~~~~~-----~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (353)
....+++ .+..+..|+.|++. +|+.|+.+ +.++||....... .......+.+|...
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-Kw~kva~L~d~~dp 225 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-KWLKVAELPDHTDP 225 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-eeeeehhcCCCCCc
Confidence 2233333 45677888998443 67777765 4788997765542 22234556677776
Q ss_pred eeeEEEEcCC----CCeEEeecCCCcEEEeecccc----------------ccceeeeeeccccceeEEEEEEc--CcEE
Q 018591 216 SLNSVVVSDD----GKWVYGGGSDGFVMGWEGNVE----------------IVRWKLACETKAHEMAVLCVCLV--GEFL 273 (353)
Q Consensus 216 ~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~~~~~~v~~~~~~--~~~l 273 (353)
+ +.++|.|+ -..|++++.|| |+||.+... ....+.+..+..|...+..+.|+ |..|
T Consensus 226 I-~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 226 I-RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred c-eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence 6 99999996 35799999999 999998741 12335566778899999999997 9999
Q ss_pred EEecCCCeEEEEecCCCcceEEecccc
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAIT 300 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~ 300 (353)
++.+.||.||+|...-..+..++..++
T Consensus 304 sStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred eecCCCceeeehhhhhhhhheeeeEEe
Confidence 999999999999876555544554444
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.1e-28 Score=187.81 Aligned_cols=276 Identities=17% Similarity=0.269 Sum_probs=206.1
Q ss_pred EEeCC-CcEEEEeCCCceeeEEeccC-ceeeEEEE-EeCCEEEEecC-CCcEEEEEcccCccceeEEeeccccccceeee
Q 018591 31 SASQG-KDIIVWQQPDLRMFTKFGHG-DGSVKAVV-TVGNKVFTAHQ-DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK 106 (353)
Q Consensus 31 s~~~d-g~v~vwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
+++.| .++.+||+.+|.....+++. ...-.++. ..+.+++++.. ...+.+|.+.........
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~-------------- 77 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY-------------- 77 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh--------------
Confidence 33444 45999999999999888765 22222222 23567776653 347899998765421100
Q ss_pred ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEE
Q 018591 107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVY 182 (353)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~ 182 (353)
.--.++|.++.-+| .+++.|+..|.|++|.+.+|..+..+.+|-..|+++.|. +.+++
T Consensus 78 ------------------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 78 ------------------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred ------------------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE
Confidence 13456899999988 555555599999999999999999999999999999993 33999
Q ss_pred EEcCCCcEEEEeCCCC----CcccccceeeeeccCCceeeEEEEcCC--CCeEEeecCCCcEEEeeccccccceeeeeec
Q 018591 183 SASADGKIKAWGKELG----KSHCHSLKGILEGHKDVSLNSVVVSDD--GKWVYGGGSDGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 183 ~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
+|+.||.|.+|.+.+. ......+...+..|.-++ +.+...+. ..++++++.|.++++||+..+.......
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI-TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--- 215 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI-TDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--- 215 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCccee-EEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe---
Confidence 9999999999986421 111334677888888776 88888764 4689999999999999999984322221
Q ss_pred cccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc-------------eEEeccccCCCc--CeEEEEeecCCCCCCeE
Q 018591 257 KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK-------------LCRVGAITGHEG--PVKCLQASPNAVGGGFL 321 (353)
Q Consensus 257 ~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~ 321 (353)
.........++|.+..+++|+.+|.|.+.++..... ...+..+.||.+ +|+|++.+-| |.+
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D----gtl 291 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD----GTL 291 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC----ccE
Confidence 122233344555589999999999999988764331 123455778988 9999999999 999
Q ss_pred EEEccCCCeEEEEEcCCCCCccccc
Q 018591 322 LYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 322 l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
|++|+.||+|+|||+.+.+++.+..
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHHh
Confidence 9999999999999999999888766
No 110
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=183.59 Aligned_cols=250 Identities=22% Similarity=0.318 Sum_probs=199.4
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
..-+.|..|+ +++|++|+.||.|.+|+..+++.. ..+.. .....+.-+..+|.|
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr-----KDLkY-------------------QAqd~fMMmd~aVlc 268 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-----KDLKY-------------------QAQDNFMMMDDAVLC 268 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhh-----hhhhh-------------------hhhcceeecccceEE
Confidence 3445666676 899999999999999999887621 11110 011122357889999
Q ss_pred EEEeC--CeEEEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591 134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 208 (353)
+.|+. .++++|+.||.|++|.+++|.|++.|. +|...|+|+.| .+..+++++.|.++++.-++.++ +...
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-----~LKE 343 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-----CLKE 343 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-----hHHH
Confidence 99998 899999999999999999999999996 89999999999 34499999999999999999998 8999
Q ss_pred eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE---cCcEEEEecCCCeEEEE
Q 018591 209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL---VGEFLCSGSADKSIGIW 285 (353)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iw 285 (353)
+++|...+ +...|.++|..+++++.||+|++|+.++..+...+.. .+...++..+.+ +...++++...++|+|.
T Consensus 344 frGHsSyv-n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~--~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 344 FRGHSSYV-NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP--LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred hcCccccc-cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC--CCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 99999987 9999999999999999999999999998843322211 123444555443 57789999999999999
Q ss_pred ecCCCcceEEeccc---cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 286 KREAFGKLCRVGAI---TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 286 ~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
++.. + .++.+ +...+...+...+|. |.++.+.++|+.++.+.+.+++...+.
T Consensus 421 n~qG-Q---vVrsfsSGkREgGdFi~~~lSpk----GewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 421 NMQG-Q---VVRSFSSGKREGGDFINAILSPK----GEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred eccc-e---EEeeeccCCccCCceEEEEecCC----CcEEEEEccCcEEEEEEeecCceeeee
Confidence 9874 3 33333 233455677789999 999999999999999999988765543
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.8e-27 Score=173.69 Aligned_cols=251 Identities=18% Similarity=0.267 Sum_probs=193.9
Q ss_pred ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc
Q 018591 53 GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS 130 (353)
Q Consensus 53 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (353)
.+|..-|.++.|+ |+++++|+.|++++|||.+... ..+.+ ...|..|.+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-~~W~~---------------------------Ts~Wrah~~S 61 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-GTWSC---------------------------TSSWRAHDGS 61 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-CceEE---------------------------eeeEEecCCc
Confidence 4678889999998 9999999999999999985443 12222 2345589999
Q ss_pred eEEEEEeC----CeEEEecCCCcEEEEEcC---------CceeeeeccccCcceEEEEEeCC----eEEEEcCCCcEEEE
Q 018591 131 ISCLTVYN----GLIYSGSWDKTLKVWRVA---------DLKCLESIKAHDDAVNGLVASKG----IVYSASADGKIKAW 193 (353)
Q Consensus 131 i~~~~~~~----~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iw 193 (353)
|..+.|.+ +.+++++.|+++.||.-. ......++......|+.+.|.+. .+++++.||.+|||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 99999976 889999999999999752 11234455666889999999444 89999999999999
Q ss_pred eCCCCCc-ccccceeeee-------ccCCceeeEEEEcCC---CCeEEeecCC-----CcEEEeeccccccceeeeeecc
Q 018591 194 GKELGKS-HCHSLKGILE-------GHKDVSLNSVVVSDD---GKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 194 d~~~~~~-~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~ 257 (353)
+.-+... ....+...+. .+... ..|+.|+|. ..+|++|+.+ +.++||....+...+....++.
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~-~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQP-CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCc-ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence 8754431 1122222222 22233 378889874 4678888766 5899999888877788888889
Q ss_pred ccceeEEEEEEc---C---cEEEEecCCCeEEEEecCCCc-----------------ceEEeccccCCCcCeEEEEeecC
Q 018591 258 AHEMAVLCVCLV---G---EFLCSGSADKSIGIWKREAFG-----------------KLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 258 ~~~~~v~~~~~~---~---~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
+|..+|..++|. | .+||+++.|| |+||.+.... +...+..+.+|.+.|..+.|.-.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 999999988875 2 4799999999 9999987311 24566678899999999999999
Q ss_pred CCCCCeEEEEccCCCeEEEEEcC
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
|..|++.|.||+||+|...
T Consensus 300 ----GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 300 ----GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ----eeEEeecCCCceeeehhhh
Confidence 9999999999999999754
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=6.7e-26 Score=178.40 Aligned_cols=307 Identities=17% Similarity=0.218 Sum_probs=220.1
Q ss_pred eeeeCc-cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccC
Q 018591 10 AVLSGH-VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 10 ~~l~~h-~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~ 86 (353)
..++++ +.-|.|++|. +.-++||.++|.|.||+..+.+..+....|.+.|.+++.- ...|++|+.|..|..||-+-.
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYR 318 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccc
Confidence 344444 3579999996 7789999999999999998888887777999999999987 677888999999999994333
Q ss_pred ccceeEEeeccccccceeeeecccce------------eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSN------------YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV 152 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i 152 (353)
..... .+|.....+........ .-........+..+|......++.+| +++++++.|+.+++
T Consensus 319 k~r~~----elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 319 KLRET----ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred ccccc----cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence 21111 11222222222211111 11222233344558999999999999 89999999999999
Q ss_pred EEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591 153 WRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG 231 (353)
Q Consensus 153 wd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 231 (353)
|+ ..+++.+.. -..+..|+.| +.+.++.|...|...+.|.++.. +...-.. ..++++++|+|+|.+||.
T Consensus 395 W~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-----lv~~~~d--~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 395 WN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-----LVTIHTD--NEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccce-----eEEEEec--CCceEEEEEcCCCCEEEE
Confidence 99 445544432 3678889999 45599999999999999999865 4433333 444599999999999999
Q ss_pred ecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCC--------------------
Q 018591 232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREA-------------------- 289 (353)
Q Consensus 232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~-------------------- 289 (353)
|+.|+.|++|-+..+...........+ .+++.+.| |++++.+-+.|-.|..|....
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence 999999999998876555444444444 55655555 366666666666666663221
Q ss_pred ----------------------------------------CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591 290 ----------------------------------------FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 290 ----------------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg 329 (353)
.+......++.+|.+-|++++|.-+ ...|++.+.|.
T Consensus 543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~----d~~li~tg~D~ 618 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK----DSHLISTGKDT 618 (626)
T ss_pred EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC----CceEEecCCCc
Confidence 1111233456789999999999988 67888888999
Q ss_pred eEEEEEc
Q 018591 330 SLRVWWV 336 (353)
Q Consensus 330 ~i~iw~~ 336 (353)
+|..|++
T Consensus 619 Si~qW~l 625 (626)
T KOG2106|consen 619 SIMQWRL 625 (626)
T ss_pred eEEEEEe
Confidence 9999986
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7e-27 Score=196.19 Aligned_cols=278 Identities=18% Similarity=0.208 Sum_probs=215.0
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc-eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccce
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL-RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENV 90 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~ 90 (353)
+|+..-+.|+|+ |++|++++.||.|++|+..+- +....+..+...|.+++..+++|++++.+++|.+|.+..++...
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence 688999999995 999999999999999996655 44455555788999999998899999999999999998876321
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHD 168 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 168 (353)
++...+-++.+++++. .+++.|+.|-.|++.+..+......+++|.
T Consensus 91 --------------------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 91 --------------------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred --------------------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence 2224556788899988 799999999999999999999999999999
Q ss_pred cceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccc--ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591 169 DAVNGLVASK--GIVYSASADGKIKAWGKELGKSHC--HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 169 ~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 244 (353)
++|.++.+++ ++|++.+.||.|++||+.++.... ..+..........++..++|+|++..++....|+.|++|+..
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 9999999933 489999999999999999876210 001111122224456889999998889999999999999999
Q ss_pred ccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS 324 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s 324 (353)
.....+.+..........++.++|+|.|||+++.||.|.|||.++-+ . ......|.+++|-|+ ...+-.
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~---~~~~~~Vc~~aw~p~----~n~it~ 287 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE----R---HEFKRAVCCEAWKPN----ANAITL 287 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch----h---ccccceeEEEecCCC----CCeeEE
Confidence 88655555444443344556667779999999999999999998732 1 223467999999998 544444
Q ss_pred ccCCCeEEEE
Q 018591 325 GSLDKSLRVW 334 (353)
Q Consensus 325 ~~~dg~i~iw 334 (353)
-...|...+|
T Consensus 288 ~~~~g~~~~~ 297 (933)
T KOG1274|consen 288 ITALGTLGVS 297 (933)
T ss_pred EeeccccccC
Confidence 3334443333
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=185.87 Aligned_cols=248 Identities=25% Similarity=0.366 Sum_probs=196.6
Q ss_pred CCcEEEEEeCC-CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591 25 CGEFILSASQG-KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK 101 (353)
Q Consensus 25 ~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 101 (353)
++.+++++... ..|.+|.+..........--.++|.++.-+ |.+|+.|+..|.|++|.+.++. ++..+
T Consensus 49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----LL~v~---- 119 (476)
T KOG0646|consen 49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----LLNVL---- 119 (476)
T ss_pred chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecccc-----HHHHH----
Confidence 35577777543 478999987665555333446789999876 7788888899999999999987 33332
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC---------CceeeeeccccCcc
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA---------DLKCLESIKAHDDA 170 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~~~~ 170 (353)
.+|-..|+|+.|+. .++++|+.||.|.+|++. +-++...+..|.-+
T Consensus 120 -----------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 120 -----------------------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred -----------------------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 37999999999998 899999999999999873 34677888999999
Q ss_pred eEEEEEe-C---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 171 VNGLVAS-K---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 171 v~~i~~~-~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
|+++... + ..+++++.|.++++||+..+. ++...... ..+.+++.+|-+..+++|+.+|.|.+.++...
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-----LLlti~fp--~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-----LLLTITFP--SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccce-----eeEEEecC--CcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 9999992 2 399999999999999999987 44444433 33599999999999999999999999887654
Q ss_pred c------------cceeeeeeccccce--eEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591 247 I------------VRWKLACETKAHEM--AVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 247 ~------------~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~ 310 (353)
. ........+.+|.. .|+|++. ||.+|++|+.||.|+|||+.+.+ .++++....++|+.+.
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q---~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ---CIRTLQTSKGPVTNLQ 326 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH---HHHHHhhhccccceeE
Confidence 3 12233445667777 7877766 59999999999999999999876 6776666778999999
Q ss_pred eecC
Q 018591 311 ASPN 314 (353)
Q Consensus 311 ~~~~ 314 (353)
+.|-
T Consensus 327 i~~~ 330 (476)
T KOG0646|consen 327 INPL 330 (476)
T ss_pred eecc
Confidence 9664
No 115
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=191.68 Aligned_cols=280 Identities=19% Similarity=0.249 Sum_probs=206.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCcee------eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeecc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRM------FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTL 97 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 97 (353)
...|+.+..||.|.++|...... +.....|.+.|..+.|. ...|++++.|.++++||+++... .
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-----~--- 135 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-----V--- 135 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-----e---
Confidence 45899999999999999765433 35567899999999998 56799999999999999998761 1
Q ss_pred ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce---------------
Q 018591 98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK--------------- 159 (353)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~--------------- 159 (353)
..+++.+|...|.+++|.+ ..+++|+.||.|.|||++-..
T Consensus 136 ----------------------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 136 ----------------------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred ----------------------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 1224559999999999988 899999999999999986321
Q ss_pred -----e-------eeeccccC----cceEEEEE-eCCeEEEEcC-CCcEEEEeCCCCCccc-cccee--eeecc--CCce
Q 018591 160 -----C-------LESIKAHD----DAVNGLVA-SKGIVYSASA-DGKIKAWGKELGKSHC-HSLKG--ILEGH--KDVS 216 (353)
Q Consensus 160 -----~-------~~~~~~~~----~~v~~i~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~--~~~~~--~~~~ 216 (353)
+ +....++. +.|+.+.| .+..|++++. |+.|++||++...... ..... .+..+ ...-
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 0 00111232 34566777 5668998888 9999999998765210 01111 11112 1122
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc----eeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE----MAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
+.++.....|.+|++.+.|+.|+.|++..... .+...+.++. ..-.+++|++.++++|+.|...++|.+.+.+.
T Consensus 274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSI--SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred eEEEEecCCCCeEEEEecCCcEEEEeccccCc--CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 36777788889999999999999999987532 2222223322 22356678999999999999999999998765
Q ss_pred eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
....+.+|.-.|++++|.|.. -.-++++++|..+++|++..+-+.
T Consensus 352 --~~~~l~Ght~eVt~V~w~pS~---~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 352 --PPALLLGHTREVTTVRWLPSA---TTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred --ChhhhhCcceEEEEEeecccc---CCCceeeccCcceEEEeccCchhh
Confidence 556688999999999999973 345677799999999999766443
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=5e-27 Score=191.28 Aligned_cols=326 Identities=17% Similarity=0.202 Sum_probs=234.6
Q ss_pred CCceeeeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCCce---------------------ee---------
Q 018591 5 SHRSLAVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPDLR---------------------MF--------- 49 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~~~---------------------~~--------- 49 (353)
+.+.+..+.||++.|.+++|. .-+|||+|.|..||||.+.-+. ..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 346788999999999999995 3489999999999999853221 11
Q ss_pred -EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee--EEeecccc-ccceeeeecccce-eEe-------
Q 018591 50 -TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF--RLVDTLPT-TKDYLGKFMKQSN-YVQ------- 115 (353)
Q Consensus 50 -~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~------- 115 (353)
..+.+|...|+++.|. +..|++++.|.++.+|..++...--. ..+..... ...+......+.. .+.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 1124899999999998 55799999999999999877632111 11222221 1223332222221 111
Q ss_pred ---eccc------ceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC----CceeeeeccccCcceEEEEE-e-C
Q 018591 116 ---TRRH------HKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA----DLKCLESIKAHDDAVNGLVA-S-K 178 (353)
Q Consensus 116 ---~~~~------~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~i~~-~-~ 178 (353)
.... ......||.+.|+.++|+| .+|++.+.|-+-+++-.- +...+.+-+-|...++|+++ + +
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 1111 1123348999999999998 999999999999998643 12334455678889999999 5 4
Q ss_pred CeEEEEcCCCcEEEEeCCCCC-------------------------------------------c---------------
Q 018591 179 GIVYSASADGKIKAWGKELGK-------------------------------------------S--------------- 200 (353)
Q Consensus 179 ~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~--------------- 200 (353)
-.+++|..+..+|+|+....- .
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 589999999999999731100 0
Q ss_pred -------------ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeeecccccee
Q 018591 201 -------------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACETKAHEMA 262 (353)
Q Consensus 201 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (353)
...+....+.+|.-. |.+++.+|+++++++++... .|++|+..+- .....+.+|...
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyE-v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----~~~~~L~~HsLT 574 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYE-VYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----LQVQELEGHSLT 574 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCcee-EEEEEecCCCCEEeehhhhCCccceEEEEEeccch----hhhheecccceE
Confidence 000111123345444 59999999999999998653 6899998876 556678899999
Q ss_pred EEEEEE--cCcEEEEecCCCeEEEEecCCCcce-EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 263 VLCVCL--VGEFLCSGSADKSIGIWKREAFGKL-CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 263 v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|+.+.| ++++|++.+.|+++.+|........ ......+.|+.-|.+..|+|+ +.+++|+|.|.+|++|...+.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd----e~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD----EKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc----cceeEEecCCceEEEEeccCc
Confidence 988877 4999999999999999998654321 123347789999999999999 999999999999999999887
No 117
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-27 Score=171.53 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=179.5
Q ss_pred eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCC
Q 018591 124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~ 199 (353)
+.+|..+++.+.++. ++|++++.|....+|-..+|+.+.++.+|.+.|+++.. ....+++|+.|.++++||..+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 348999999999998 99999999999999999899999999999999999998 45599999999999999999998
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecC-----CCcEEEeecccccc---ceeeeeeccccceeEEEEEEc--
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-----DGFVMGWEGNVEIV---RWKLACETKAHEMAVLCVCLV-- 269 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~-- 269 (353)
.+..++ .+.+|..+.|+++|++++.... .+.|.++|++.... ...+......+...++..-|.
T Consensus 86 -----~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 86 -----QLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred -----EEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 444444 3445799999999998877654 46799999984321 113344444455666666554
Q ss_pred CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKS 349 (353)
Q Consensus 270 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 349 (353)
+++|++|..||.|.+||+++++. .+...+.|+..|+.+.++|+ ..++++++.|.+-++||+.+-+.+++.....
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d----~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRD----RTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCC----cceEEecccCccceeeeccceeeEEEeeecc
Confidence 99999999999999999999865 45566779999999999999 9999999999999999999998888777555
Q ss_pred cccC
Q 018591 350 IISC 353 (353)
Q Consensus 350 ~~~c 353 (353)
+++|
T Consensus 233 PvN~ 236 (327)
T KOG0643|consen 233 PVNT 236 (327)
T ss_pred cccc
Confidence 5543
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7e-27 Score=172.82 Aligned_cols=243 Identities=17% Similarity=0.212 Sum_probs=182.2
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
...|.++.|+ ++.|+.++.||.+++||+.... +... ..|..++.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~~~----------------------------~~~~~plL~ 59 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LKLK----------------------------FKHGAPLLD 59 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-----hhhh----------------------------eecCCceee
Confidence 6789999998 6778888899999999998764 1111 168999999
Q ss_pred EEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591 134 LTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILE 210 (353)
Q Consensus 134 ~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 210 (353)
.+|.+ ..+++|+.||.|+.+|++++.. ..+..|..+|.|+... .+.+++|+.|++|++||.+... ....+.
T Consensus 60 c~F~d~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d 133 (323)
T KOG1036|consen 60 CAFADESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFD 133 (323)
T ss_pred eeccCCceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccc
Confidence 99999 8999999999999999987654 4455799999999994 6799999999999999999743 222222
Q ss_pred ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE--EEEEcCcEEEEecCCCeEEEEecC
Q 018591 211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--CVCLVGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~i~iw~~~ 288 (353)
... .|.++... ++.|++|+.+..+.+||++........ ....-...+. ++-|++.=.++++-||.|.+=.++
T Consensus 134 ~~k--kVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 134 QGK--KVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred cCc--eEEEEecc--CCEEEEeecCceEEEEEcccccchhhh--ccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 222 24666555 778999999999999999986433211 1112222333 334467778899999999886665
Q ss_pred CCc-ceEEeccccCCCc---------CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 289 AFG-KLCRVGAITGHEG---------PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 289 ~~~-~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
..+ ....-..++.|.. +|++|+|+|- ...|+||+.||.|.+||+.+.+.+.++..
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~----~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI----HGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccc----cceEEecCCCceEEEccCcchhhhhhccC
Confidence 441 1112223444532 7999999999 88999999999999999999988876553
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=1.1e-25 Score=177.27 Aligned_cols=293 Identities=18% Similarity=0.275 Sum_probs=219.4
Q ss_pred CCceeeeeeCccCceEEEEEC----CcEEEEE--eCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCC
Q 018591 5 SHRSLAVLSGHVGSVSSLALC----GEFILSA--SQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQD 75 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~----~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~d 75 (353)
+.+.++.+..-...|.|++|+ |.+|+.- +.+..+.|||.+.+......+.....|....|. .+.+++.+.
T Consensus 143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk- 221 (626)
T KOG2106|consen 143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK- 221 (626)
T ss_pred cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-
Confidence 344566666677899999995 6666654 446689999999988888777777888888887 566777665
Q ss_pred CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEE
Q 018591 76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd 154 (353)
|.+..|+++.+... +....++. ....-|.|++|.+ +.+++|..+|.|.+|+
T Consensus 222 ~H~~Fw~~~~~~l~--k~~~~fek--------------------------~ekk~Vl~v~F~engdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLV--KRQGIFEK--------------------------REKKFVLCVTFLENGDVITGDSGGNILIWS 273 (626)
T ss_pred ceEEEEEccCCceE--EEeecccc--------------------------ccceEEEEEEEcCCCCEEeecCCceEEEEe
Confidence 79999998877621 11111111 2236799999999 8999999999999999
Q ss_pred cCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcc--------------------------------
Q 018591 155 VADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSH-------------------------------- 201 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------- 201 (353)
..+.+..+....|.+.|.+++. .++.|++|+.|..|..||-.-.+..
T Consensus 274 ~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 274 KGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred CCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 9888888777799999999999 7889999999999999983221110
Q ss_pred ---cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC
Q 018591 202 ---CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA 278 (353)
Q Consensus 202 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 278 (353)
.........+|.... ..++.+|+...+++++.|+.+++|+ ..+..+.... ..+.....+.|.| .+|.|..
T Consensus 354 Gt~~~~f~~~v~gh~del-wgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDEL-WGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred eeecCCceEEEEecccce-eeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeec
Confidence 001111233455544 7889999999999999999999999 3333333322 2233444555567 9999999
Q ss_pred CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
.|...+.|.++.. .+. +.....++++++|+|+ |.+||.|+.|+.|.+|.+.....
T Consensus 427 ~G~w~V~d~e~~~---lv~-~~~d~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 427 TGRWFVLDTETQD---LVT-IHTDNEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred cceEEEEecccce---eEE-EEecCCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCc
Confidence 9999999999844 232 2333789999999999 99999999999999999986654
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=202.89 Aligned_cols=233 Identities=16% Similarity=0.176 Sum_probs=192.5
Q ss_pred eEEEEEC---CcEEEEEeCCCcEEEEeCCC---ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccc
Q 018591 19 VSSLALC---GEFILSASQGKDIIVWQQPD---LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSEN 89 (353)
Q Consensus 19 v~~~~~~---~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~ 89 (353)
+..|.|+ .++|||++..|.|.+||+.. .+.+..|..|+..+.++.|+ .++|++|++||+|++||++....
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 3445553 78999999999999999986 66777889999999999998 78999999999999999987651
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc-eeeeecc
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL-KCLESIK 165 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~-~~~~~~~ 165 (353)
...+.+....|..+.|+| +.++++...|.+++||++.. ++...+.
T Consensus 169 -------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 169 -------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred -------------------------------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence 222236778899999999 89999999999999999874 5678889
Q ss_pred ccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe-EEeec--CCCcEEE
Q 018591 166 AHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW-VYGGG--SDGFVMG 240 (353)
Q Consensus 166 ~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~i 240 (353)
+|.++|.|+.|+|+ +|++|+.|++|+|||+.+.+ .......+...++..+.|-|...+ |++++ .|-.|++
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~-----~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR-----AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCC-----ccceeEEeecceeeeeeeccCccchhhhhhccccceEEE
Confidence 99999999999555 99999999999999999876 455555666777899999997654 55544 4778999
Q ss_pred eeccccccceeeeeeccccceeEEEEEEcC---cEEEEecCCCeEEEEecCCCc
Q 018591 241 WEGNVEIVRWKLACETKAHEMAVLCVCLVG---EFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw~~~~~~ 291 (353)
||++.. +.+...+..|...++.++|.+ ..+.+++.||+|..-.+++..
T Consensus 293 WDvrRP---YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 293 WDVRRP---YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred Eeeccc---cccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 999876 356677888999999999973 578899999988776665544
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.6e-28 Score=199.13 Aligned_cols=280 Identities=18% Similarity=0.215 Sum_probs=209.1
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCce----eeEEeccCc---eeeEEEEEe---CCEEEEecCCCcEEEEEccc
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLR----MFTKFGHGD---GSVKAVVTV---GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~---~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~ 85 (353)
...+|+.+ -..++.++. ..++|+.+.... +...++... -.+..+.|. .++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 34455553 445666655 367777655322 222222211 233445565 78999999999999999976
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeee
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
.... .....|..|...++++.|++ .+|++|++||.|++||++..+...
T Consensus 120 ~~rn-----------------------------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 120 SIRN-----------------------------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred cccc-----------------------------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 3210 01223448999999999998 899999999999999999999999
Q ss_pred eccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 163 SIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 163 ~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
++.+....|..+.|. ++.++++...|.+.+||++... .+...+.+|.+.+ .++.|+|++.+||+|+.|+.|+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~k~~AH~GpV-~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEKKLTAHNGPV-LCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----hHHHHhhcccCce-EEEeecCCCceeeecCCCccEE
Confidence 999989999999993 4499999999999999999876 4677788898876 9999999999999999999999
Q ss_pred EeeccccccceeeeeeccccceeEEEEEEc---CcEEEEec--CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGS--ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
|||......... .. -....++.++.|- ..+|++++ .|-.|+|||++..-. +...+..|...++.++|...
T Consensus 246 iWd~t~~~~~~~--~t-InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P~~t~~eH~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 246 IWDMTDSRAKPK--HT-INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--PYATFLEHTDSVTGIAWDSG 320 (839)
T ss_pred EEeccCCCccce--eE-EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--cceeeeccCccccceeccCC
Confidence 999987532211 11 1123456666663 45788776 488999999996543 56678899999999999874
Q ss_pred CCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+...|.+++.||+|..-.+++..
T Consensus 321 ---d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 321 ---DRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ---CceeeEeecCccHHHHhhhhccc
Confidence 26799999999988766555543
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=3e-27 Score=186.00 Aligned_cols=276 Identities=16% Similarity=0.296 Sum_probs=214.4
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---eeeEEecc--CceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---RMFTKFGH--GDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~--~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
+++| .|..-|.++.++ .++++||+. |.|+|||+... ..+..+.. ....|.++... ++.|++|+.-.++.
T Consensus 413 ~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 413 INTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred hhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 3344 477788888886 789999987 78999998643 23333322 24566666554 88999999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
|||+........ ..++ .......+++.+| +..+++..||.|.|||+.+
T Consensus 491 iWDLAapTprik---aelt---------------------------ssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 491 IWDLAAPTPRIK---AELT---------------------------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred eeeccCCCcchh---hhcC---------------------------CcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 999987652111 1111 2223456677787 8889999999999999999
Q ss_pred ceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591 158 LKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD 235 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 235 (353)
...++.|++|...+.||.++ +..|.+|+.|.+||-||+++++ . ..+......|.++.++|++.++++|-.+
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr-----q--lqqhdF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR-----Q--LQQHDFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh-----h--hhhhhhhhhheecccCCCccceeeeccc
Confidence 99999999999999999994 3399999999999999999886 1 1122223335899999999999999999
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
+.+.+...... ....+..|..-|.++.|. |+++++.+.|+.+..|...-+..+... + ..++|.+...+.
T Consensus 614 s~vevlh~skp-----~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs---k-E~SsVlsCDIS~ 684 (705)
T KOG0639|consen 614 SNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---K-ESSSVLSCDISF 684 (705)
T ss_pred CcEEEEecCCc-----cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec---c-ccCcceeeeecc
Confidence 99998877654 344566788888888775 999999999999999999887743333 2 356899999999
Q ss_pred CCCCCCeEEEEccCCCeEEEEEc
Q 018591 314 NAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
| .++++||+.|....||.+
T Consensus 685 d----dkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 685 D----DKYIVTGSGDKKATVYEV 703 (705)
T ss_pred C----ceEEEecCCCcceEEEEE
Confidence 9 899999999999999876
No 123
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=6.9e-26 Score=188.36 Aligned_cols=314 Identities=19% Similarity=0.267 Sum_probs=233.3
Q ss_pred CCCCceeeeeeCccCceEEEEEC--C-cEEEEEeCCCcEEEEeCCCceeeEEec-cCceeeEEEEEe--CCEEEEecCCC
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--G-EFILSASQGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDS 76 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~-~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg 76 (353)
++.++.+.+|+.-.++|++++|. | ..|++|+..|.+.+||++..+.+.... .|.+.|....|- ...+++++.|+
T Consensus 231 lK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 231 LKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred cccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCC
Confidence 56778889999667999999994 4 478888888999999999988887665 788888888876 56788999999
Q ss_pred cEEEEEcccCccc--e----------eEEeeccccccceee-----------------------e---------------
Q 018591 77 RIRVWKVSRSSEN--V----------FRLVDTLPTTKDYLG-----------------------K--------------- 106 (353)
Q Consensus 77 ~i~~w~~~~~~~~--~----------~~~~~~~~~~~~~~~-----------------------~--------------- 106 (353)
.+++|-.+++... . ..++........++. .
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 9999977743321 0 000110000000000 0
Q ss_pred ----------eccc-------cee--Eeecccceeee-----------eecC------CceEEEEEeC--CeEEEecCCC
Q 018591 107 ----------FMKQ-------SNY--VQTRRHHKRLW-----------IEHA------DSISCLTVYN--GLIYSGSWDK 148 (353)
Q Consensus 107 ----------~~~~-------~~~--~~~~~~~~~~~-----------~~~~------~~i~~~~~~~--~~l~~~~~dg 148 (353)
+... .+. ..........| ..+. ..+++++.++ +..+.|+..|
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence 0000 000 00000000111 1222 5677777777 8889999999
Q ss_pred cEEEEEcCCceeeeec---cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591 149 TLKVWRVADLKCLESI---KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 149 ~v~iwd~~~~~~~~~~---~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
.|-+|++.+|-....+ ..|.++|++++. -+..+++++.+|.+++||..... +...+.-... +..+..+
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-----l~~~l~l~~~--~~~iv~h 543 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-----LKKSLRLGSS--ITGIVYH 543 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-----eeeeeccCCC--cceeeee
Confidence 9999999999888888 589999999999 34489999999999999998876 5554444333 4788888
Q ss_pred CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591 224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 301 (353)
.....++.+..|-.|+++|..+. +....+.+|...++++++ +|+.|++++.|++|++||+.++.....+ .
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~----kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~----~ 615 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTR----KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL----L 615 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhh----hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE----e
Confidence 88889999999999999999987 788889999999988777 4999999999999999999998743322 2
Q ss_pred CCcCeEEEEeecCCCCCCeEEEEccCC-CeEEEEE
Q 018591 302 HEGPVKCLQASPNAVGGGFLLYSGSLD-KSLRVWW 335 (353)
Q Consensus 302 h~~~v~~~~~~~~~~~~~~~l~s~~~d-g~i~iw~ 335 (353)
-..+.+++.|+|+ |++|||...| .-|++|.
T Consensus 616 vd~~~~sls~SPn----gD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 616 VDSPCTSLSFSPN----GDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cCCcceeeEECCC----CCEEEEEEecCceEEEEE
Confidence 4678999999999 9999999999 5699995
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.2e-28 Score=181.23 Aligned_cols=242 Identities=16% Similarity=0.210 Sum_probs=192.2
Q ss_pred CCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 5 SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
.-+++.+|+.|.+.|..|+++...+++++.|.+|+.|.++. .+..++.+ ...+..+.-. ++.++|+|. .|.|||
T Consensus 98 qR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 98 QRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWD 173 (433)
T ss_pred hhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecc
Confidence 44567899999999999999989999999999999999755 46666654 4556666655 677888887 499999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~ 159 (353)
..... .+. .+.--...|.++.|+| ..|++++.|+.|.+||+++..
T Consensus 174 ~~R~~-----Pv~---------------------------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~ 221 (433)
T KOG0268|consen 174 EQRDN-----PVS---------------------------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS 221 (433)
T ss_pred cccCC-----ccc---------------------------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence 87654 111 2223456899999999 889999999999999999999
Q ss_pred eeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 160 CLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
+++.+.. ...-+.|+|+|. .+++|+.|..++.||++... .+.....+|.+.+ .++.|+|.|+.+++|+.|.+
T Consensus 222 Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----~p~~v~~dhvsAV-~dVdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 222 PLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----RPLNVHKDHVSAV-MDVDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred ccceeee-eccccceecCccccceeeccccccceehhhhhhc----ccchhhcccceeE-EEeccCCCcchhccccccce
Confidence 8877643 556688999666 78899999999999999876 4778888888877 99999999999999999999
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
|+||..+.+... ....+ .-...|.|+.| |.+++++|+.|+.|++|.....+
T Consensus 296 IRIf~~~~~~SR-diYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 296 IRIFPVNHGHSR-DIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEeecCCCcch-hhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 999999876321 11111 11245667666 58999999999999999987655
No 125
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=171.28 Aligned_cols=287 Identities=16% Similarity=0.207 Sum_probs=207.4
Q ss_pred ceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec-cCceeeEEEEEe-CCEEEEecCCCcEEEEEc
Q 018591 7 RSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV-GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~ 83 (353)
.|..+|++|.+.|+++.|. +.+|.+|..-|.|++|++++.+....+. .|...|+.+..- ++.+.+-+.|+.+.+|++
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 4678899999999999997 7789999999999999999999888888 678888888776 789999999999999999
Q ss_pred ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCC-cEEEE---------
Q 018591 84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDK-TLKVW--------- 153 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-~v~iw--------- 153 (353)
.... +.. .|+-.++++.|.+.-+...+... ....+
T Consensus 85 a~s~---~i~--------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 85 AYSA---FIS--------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred cCcc---eEE--------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 8754 111 23334444555442222222221 12222
Q ss_pred --EcCCceeeeec----cccCcceEEEEE--eCC---eEEEEcCCCcEEEEeCCCCCcc-----cccceeeeeccCCcee
Q 018591 154 --RVADLKCLESI----KAHDDAVNGLVA--SKG---IVYSASADGKIKAWGKELGKSH-----CHSLKGILEGHKDVSL 217 (353)
Q Consensus 154 --d~~~~~~~~~~----~~~~~~v~~i~~--~~~---~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~v 217 (353)
|......+... .+..+.+.+..+ ... .+++|-.+|.+.+||+.++... ..+.......|...+
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv- 208 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV- 208 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc-
Confidence 22111111111 123466777775 112 7788889999999999986311 111222334455544
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccce--eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEE
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW--KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR 295 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 295 (353)
.++.+.+.-..=++|+.+..+..|++....... .....++.....-..+.+|++.+|+++.|+.||+|+.++.. +
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---p 285 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---P 285 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---c
Confidence 899998876677888888899999887653222 22223333334456788999999999999999999999888 7
Q ss_pred eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
+..++-|.+.|++++|+|+ ..++|.+|.|++|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd----~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPD----CELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCC----CchhhhccCCceEEeeec
Confidence 8889999999999999999 899999999999999986
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.7e-27 Score=183.71 Aligned_cols=213 Identities=25% Similarity=0.352 Sum_probs=179.2
Q ss_pred eeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce----------eeeeccccCcceEEEEE---eCCeEEEEcCC
Q 018591 124 WIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK----------CLESIKAHDDAVNGLVA---SKGIVYSASAD 187 (353)
Q Consensus 124 ~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~i~~---~~~~l~~~~~d 187 (353)
...|.+.|+.+.+.| ..+++.+..+.|.|||..+.. +-.++.+|...-++++| ..+.+++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 347999999999988 788888999999999986421 22367789887788999 34599999999
Q ss_pred CcEEEEeCCCCCc--ccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE
Q 018591 188 GKIKAWGKELGKS--HCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL 264 (353)
Q Consensus 188 g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 264 (353)
++|++||+..... ....+...+.+|...+ ..++|++- ...|++.+.|+.+.|||++++ ..+......+|...+.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~V-eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVV-EDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVN 276 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcce-ehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCcee
Confidence 9999999986653 2345667788888876 99999994 568889999999999999973 3467777889999999
Q ss_pred EEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 265 CVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 265 ~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
|++++ +..||+|+.|++|++||+++... ++..+.+|...|.++.|+|.. ...||+++.|+.+.|||+..-..
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~---etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHN---ETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCC---CceeEecccCCcEEEEecccccc
Confidence 99996 77999999999999999998776 788899999999999999984 67999999999999999987655
Q ss_pred ccc
Q 018591 342 TSD 344 (353)
Q Consensus 342 ~~~ 344 (353)
.+.
T Consensus 352 eq~ 354 (422)
T KOG0264|consen 352 EQS 354 (422)
T ss_pred ccC
Confidence 543
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.5e-26 Score=188.34 Aligned_cols=316 Identities=17% Similarity=0.167 Sum_probs=223.3
Q ss_pred EEEEEC--CcEEEEEeCCCcEEEEeCCCceee---EEeccCceeeEEEEEe-------------CCEEEEecCCCcEEEE
Q 018591 20 SSLALC--GEFILSASQGKDIIVWQQPDLRMF---TKFGHGDGSVKAVVTV-------------GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~---~~~~~~~~~v~~~~~~-------------~~~l~s~~~dg~i~~w 81 (353)
-++.|+ .+.|...-.|..++|||+.+-..+ ..+-.|...|+.+.-- ...+++++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 356676 668888889999999998875433 3344577777776531 3568999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEe-------ecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQ-------TRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV 152 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i 152 (353)
+++.......-.-..+. ............... ...+......+....+.+++.+| ++|++|..-|.+++
T Consensus 408 ~l~~ctnn~vyrRNils--~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILS--ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred ecccccccceeecccch--hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 99874322110000000 000000000000000 00011111124456799999999 89999999999999
Q ss_pred EEcCCceeeeeccccCcceEEEEEe-C----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-
Q 018591 153 WRVADLKCLESIKAHDDAVNGLVAS-K----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG- 226 (353)
Q Consensus 153 wd~~~~~~~~~~~~~~~~v~~i~~~-~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 226 (353)
|++.+.+....+++|...|.|+.++ + .+|++++.|.-|.+||....- .+...+.+|...+ +++.|--+|
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny----~l~qtld~HSssI-TsvKFa~~gl 560 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY----DLVQTLDGHSSSI-TSVKFACNGL 560 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc----chhhhhcccccce-eEEEEeecCC
Confidence 9999999999999999999999993 3 289999999999999997654 4778888998887 999998877
Q ss_pred -CeEEeecCCCcEEEeecccc-ccceeeeeeccccceeEE--EEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCC
Q 018591 227 -KWVYGGGSDGFVMGWEGNVE-IVRWKLACETKAHEMAVL--CVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH 302 (353)
Q Consensus 227 -~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h 302 (353)
..+++++.|..|.+--.+.. ........+-......+. .+.++.+++++++.|..|+||+++++++.+...--++|
T Consensus 561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence 67888888986654333211 001111111111223344 44455789999999999999999999966555555678
Q ss_pred CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
++....+...|. |.||++.+.|.++.++|+.+++++++..
T Consensus 641 eG~lIKv~lDPS----giY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 641 EGDLIKVILDPS----GIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred CCceEEEEECCC----ccEEEEeecCCceEEEEeccchhhhhhc
Confidence 888999999999 9999999999999999999999998754
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=177.39 Aligned_cols=283 Identities=13% Similarity=0.195 Sum_probs=217.4
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe--CC-EEEEecCCCcEEEEEcccCcc
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRVWKVSRSSE 88 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~ 88 (353)
.++|++|.|+ ...|++|+.||++++|.+. ....++.+.-...+|.+..|. |. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999998 6799999999999999864 345666666667888888887 66 899999999999999988764
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
..+...... ....+..+..++ ++|+..+..|.|.+....+++.+..++.
T Consensus 293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI 343 (514)
T ss_pred ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence 333332221 123445556666 8999999999999999999999988864
Q ss_pred cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591 167 HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 167 ~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 244 (353)
.+.|..++| +++ .|++++.+|.|.+||++... +...+.....---++++.++++.+||+|+..|.|-|||.+
T Consensus 344 -eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-----~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 344 -EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS-----CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred -ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc-----eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 788999999 333 88888889999999999886 6666665554434789999999999999999999999976
Q ss_pred ccc--cceeeeeeccccceeEEEEEEc--CcEEEEec--CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591 245 VEI--VRWKLACETKAHEMAVLCVCLV--GEFLCSGS--ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG 318 (353)
Q Consensus 245 ~~~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 318 (353)
+.. ...+++..+..-...|..+.|+ .++||.++ ....+++-.+.+...+...-.....-+.|+|++|+|.
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~---- 493 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN---- 493 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC----
Confidence 531 1224555556666778888775 67777766 4678888887765522222222233456999999999
Q ss_pred CeEEEEccCCCeEEEEEcC
Q 018591 319 GFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 319 ~~~l~s~~~dg~i~iw~~~ 337 (353)
+-+||.|..+|.+.+|.+.
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 9999999999999999874
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1e-26 Score=171.14 Aligned_cols=230 Identities=22% Similarity=0.302 Sum_probs=180.6
Q ss_pred eccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCcc--ceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 52 FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSE--NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 52 ~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
...|.+.|+++..+ ++++++|+.||.|.+||++.... ...-...... + . ...--.+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c---------------~-v---~~~h~~~ 99 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKC---------------I-V---AKQHENG 99 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheee---------------e-c---cccCCcc
Confidence 35688999999997 89999999999999999986541 1111110000 0 0 0001127
Q ss_pred cCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe-----CCeEEEEcCCCcEEEEeCCCC
Q 018591 127 HADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-----KGIVYSASADGKIKAWGKELG 198 (353)
Q Consensus 127 ~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-----~~~l~~~~~dg~i~iwd~~~~ 198 (353)
|.-.|.++.|.| .++.+++.|.++++||.++.+....|+. ++.|++-+++ .-++++|..+-.|++.|+..+
T Consensus 100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 888999999999 8999999999999999999888777754 5667766663 337888999999999999999
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCCCe-EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKW-VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS 277 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 277 (353)
. ....+.+|.+.+ .++.|+|...+ |++|+.||.|++||++..
T Consensus 179 s-----~sH~LsGHr~~v-laV~Wsp~~e~vLatgsaDg~irlWDiRra------------------------------- 221 (397)
T KOG4283|consen 179 S-----FSHTLSGHRDGV-LAVEWSPSSEWVLATGSADGAIRLWDIRRA------------------------------- 221 (397)
T ss_pred c-----ceeeeccccCce-EEEEeccCceeEEEecCCCceEEEEEeecc-------------------------------
Confidence 8 899999999987 99999997664 688999999999999764
Q ss_pred CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
.|..++.|..+.+.+..+..-..|.+.|..++|+.+ +.++++.+.|..+++|+..+++...
T Consensus 222 -sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd----~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 222 -SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD----ARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred -cceeEEeecccCccCccccccccccceeeeeeeccc----chhhhhccCccceEEeecccCcccc
Confidence 244555666655544455556789999999999999 9999999999999999999886543
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=166.79 Aligned_cols=276 Identities=14% Similarity=0.207 Sum_probs=203.1
Q ss_pred eEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 19 VSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 19 v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
-.|+.|+ |.+||+|..||.|.|||+.+...-+.+.+|..+|.+++|+ |..|++++.|..|.+||+..+. ++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-----~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-----PL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-----ce
Confidence 7889997 9999999999999999999999999999999999999998 8999999999999999998886 22
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCc--
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDD-- 169 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-- 169 (353)
..+ ...++|....|+| +..++.-.+..-.+.++..++....-....+
T Consensus 101 ~ri----------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 101 KRI----------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred eEE----------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence 222 4567889999998 5555555555555555544221111011111
Q ss_pred -c-eEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591 170 -A-VNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 170 -~-v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
. -.+..| .++++++|...|.+.++|..+.+ +...++......|..+.++..|+.|+.-+.|..|+.|+++.
T Consensus 153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e-----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE-----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ccccccccccCCCCEEEEecCcceEEEEecchhe-----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 1 111234 56699999999999999999887 66666655534458999999999999999999999999873
Q ss_pred ccc-----ceeeeeec----cccceeEEEEEEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCCC-cCeEEEEeecC
Q 018591 246 EIV-----RWKLACET----KAHEMAVLCVCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGHE-GPVKCLQASPN 314 (353)
Q Consensus 246 ~~~-----~~~~~~~~----~~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~ 314 (353)
-.. ..++...+ ....-...|++-+|.|+++|+ ....++||....|. .++.+.|.. .....+.|.|-
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc---eeeeecCCchhheeecccccc
Confidence 110 11111111 111223355555688888776 45689999999888 666677766 56889999998
Q ss_pred CCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
...+++- ..|.+++|......
T Consensus 305 ----rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 305 ----RPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred ----eeeeeec-cCCceEEEEeeccc
Confidence 7778877 78899999876543
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-24 Score=175.09 Aligned_cols=280 Identities=18% Similarity=0.217 Sum_probs=219.7
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee-EEecc-CceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccce
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF-TKFGH-GDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENV 90 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~ 90 (353)
..+|++|||+ .+.||.+-.||.|.+|++...-.. ..+.+ ....|.+++|. +..|++.+.+|.|.-||+.+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~-- 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ-- 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce--
Confidence 4789999996 678999999999999999875443 33443 46789999999 99999999999999999988762
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee--eccc
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE--SIKA 166 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~--~~~~ 166 (353)
...+....+.|.+++.+| ..++.|+.||.+..++...++... .+..
T Consensus 103 ------------------------------~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 103 ------------------------------KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred ------------------------------eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence 122225667999999999 889999999988888877665543 3444
Q ss_pred cCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccc--eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 167 HDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSL--KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 167 ~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
..+.|.++.|++. .+++|+.||.|++||...+....... ...+.......|.++.|-.++ .+++|...|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEc
Confidence 5789999999444 59999999999999999887321000 111222234456778877554 799999999999999
Q ss_pred ccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEeecCCCCCC
Q 018591 243 GNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQASPNAVGGG 319 (353)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~ 319 (353)
...+ .+......|...|.+++.+ ++++++++.|+.|.-|...+.+. .........|...|.+++..++
T Consensus 232 ~~~g----TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~----- 302 (691)
T KOG2048|consen 232 SIFG----TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN----- 302 (691)
T ss_pred ccCc----chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----
Confidence 9998 7788888899999998875 68999999999999998877654 3333445678889999999965
Q ss_pred eEEEEccCCCeEEEEEcCC
Q 018591 320 FLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 320 ~~l~s~~~dg~i~iw~~~~ 338 (353)
.+++|+.|..+.+-....
T Consensus 303 -~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 -ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -eEEecceeeEEEEccccc
Confidence 999999999998876665
No 132
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-27 Score=195.45 Aligned_cols=246 Identities=23% Similarity=0.412 Sum_probs=205.6
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeee
Q 018591 29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK 106 (353)
Q Consensus 29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
++....+-.+++||.+ .+..|...+.++..- +..+++|+.|..+-+|.+.....
T Consensus 7 ~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~------------------ 62 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA------------------ 62 (825)
T ss_pred cceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch------------------
Confidence 3444455567778754 345567777776654 78899999999999999865441
Q ss_pred ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE
Q 018591 107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY 182 (353)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 182 (353)
..-+.+|..+|.++.|+. .+|++|+.+|+|++||++..+.++++.+|...+..+.|+|- +.+
T Consensus 63 --------------i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 63 --------------ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred --------------hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEec
Confidence 111348999999999998 88999999999999999999999999999999999999654 778
Q ss_pred EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccccee
Q 018591 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA 262 (353)
Q Consensus 183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (353)
.++.|..+++||++... +...+.+|...+ ..+.|+|+|++++.++.|..+++||...+ ++..++..|...
T Consensus 129 ~gStdtd~~iwD~Rk~G-----c~~~~~s~~~vv-~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~ 198 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKG-----CSHTYKSHTRVV-DVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGK 198 (825)
T ss_pred cccccccceehhhhccC-----ceeeecCCccee-EEEeecCCCceeeccCCcceeeeeccccc----cccccccccccc
Confidence 89999999999999766 788888876655 99999999999999999999999999988 788888999999
Q ss_pred EEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591 263 VLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 263 v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg 329 (353)
+.++.++ .-+++.|+.|+++++||+++.+ .+.........|.+++|+|+ ++.+++|..+.
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe---~I~s~~~~~~~v~~~~fn~~----~~~~~~G~q~s 260 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFE---VISSGKPETDGVRSLAFNPD----GKIVLSGEQIS 260 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeE---EeeccCCccCCceeeeecCC----ceeeecCchhh
Confidence 8888776 5688999999999999998766 56666667889999999999 99999987664
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=3.4e-25 Score=172.28 Aligned_cols=296 Identities=14% Similarity=0.120 Sum_probs=209.9
Q ss_pred CCCceeeeeeCccCceEEEEEC---C-cEEEEEeCCCcEEEEeCC----CceeeEEeccCceeeEEEEEe---CCEEEEe
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC---G-EFILSASQGKDIIVWQQP----DLRMFTKFGHGDGSVKAVVTV---GNKVFTA 72 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~---~-~~l~s~~~dg~v~vwd~~----~~~~~~~~~~~~~~v~~~~~~---~~~l~s~ 72 (353)
.+.....+.+-|.++|++++|+ . +++|+|+.-|+|-+||+. ...-+..+..|.++|.+|.|+ ...+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 3455667888899999999996 3 789999999999999994 234566778899999999998 5789999
Q ss_pred cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcE
Q 018591 73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTL 150 (353)
Q Consensus 73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v 150 (353)
+.||+|++-|++......+.... .....+.++.|+. ..++.+..=|..
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNF 303 (498)
T ss_pred ccCceeeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccce
Confidence 99999999999876521111110 1233455666665 666777766799
Q ss_pred EEEEcCCcee-eeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC
Q 018591 151 KVWRVADLKC-LESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG 226 (353)
Q Consensus 151 ~iwd~~~~~~-~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (353)
.+||+++... ...+..|...|.+++++| -++++++.|++.+|||++.......+ ......|...+ .+..|||.+
T Consensus 304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV-~sAyFSPs~ 381 (498)
T KOG4328|consen 304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSV-NSAYFSPSG 381 (498)
T ss_pred EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceeccccccee-eeeEEcCCC
Confidence 9999998654 666778889999999944 49999999999999999977633322 23334455554 999999998
Q ss_pred CeEEeecCCCcEEEeecc---ccccceeeeeeccccceeE----EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc
Q 018591 227 KWVYGGGSDGFVMGWEGN---VEIVRWKLACETKAHEMAV----LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299 (353)
Q Consensus 227 ~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~v----~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 299 (353)
-.|++.+.|..|+|||.. ........+..-..+.... ..+.|+..++++|-.-..|-|||-..++ .+.++
T Consensus 382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---~v~el 458 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---MVCEL 458 (498)
T ss_pred CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE---Eeeec
Confidence 889999999999999984 2111111111111111111 2334567899999999999999988766 34443
Q ss_pred cCC-CcCeEE-EEeecCCCCCCe-EEEEccCCCeEEEEEcCC
Q 018591 300 TGH-EGPVKC-LQASPNAVGGGF-LLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 300 ~~h-~~~v~~-~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~ 338 (353)
... ...|.+ ..|+|. +. +++-++..|.|.||--+.
T Consensus 459 ~~P~~~tI~~vn~~HP~----~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 459 HDPESSTIPSVNEFHPM----RDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cCccccccccceeeccc----ccceeccCCccceEEEEecCC
Confidence 222 224444 478998 66 444455678898886443
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-24 Score=174.15 Aligned_cols=295 Identities=18% Similarity=0.301 Sum_probs=231.5
Q ss_pred CCCceeeeeeCcc-CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 4 KSHRSLAVLSGHV-GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 4 ~~~~~~~~l~~h~-~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
..+-+..++.||. ..|.+++|. +..|++.+.+|.|.-||+.+++....+....+.|++++.+ +..++.|+.||.+.
T Consensus 56 ~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 56 NNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLY 135 (691)
T ss_pred CCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEE
Confidence 3455567788775 589999997 9999999999999999999999999999999999999998 78899999999777
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
..+...+.-. ..+.+...++.|.+++|++ ..++.|+.||.|++||..+
T Consensus 136 ~~s~~p~~I~------------------------------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 136 DFSIGPDKIT------------------------------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred EEecCCceEE------------------------------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 7776655411 1222234568999999999 5599999999999999998
Q ss_pred ceeeeec-------c-ccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 158 LKCLESI-------K-AHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 158 ~~~~~~~-------~-~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
+..+... . ....-|+++.+ .++.+++|...|+|.+||...+. +.+....|...+ .+++..+++.+
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-----LiqS~~~h~adV-l~Lav~~~~d~ 259 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-----LIQSHSCHDADV-LALAVADNEDR 259 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-----hhhhhhhhhcce-eEEEEcCCCCe
Confidence 8766522 1 13345778888 89999999999999999999998 788888888877 99999999999
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce---------------
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL--------------- 293 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--------------- 293 (353)
+++++.|+.|..|...++...|........|...+.+++.-+..+++|+.|..+.+-.....+..
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~ 339 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVS 339 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceee
Confidence 99999999999999988766677777777888888888888888999998888776544321100
Q ss_pred ------------------EE---------------eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 294 ------------------CR---------------VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 294 ------------------~~---------------~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
.. ++........|.+.+.||+ |++++.+.-. ..++|.++..
T Consensus 340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPd----g~~Ia~st~~-~~~iy~L~~~ 413 (691)
T KOG2048|consen 340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPD----GNLIAISTVS-RTKIYRLQPD 413 (691)
T ss_pred cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCC----CCEEEEeecc-ceEEEEeccC
Confidence 00 0000112235889999999 9998888643 5777877763
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.9e-26 Score=176.26 Aligned_cols=254 Identities=22% Similarity=0.259 Sum_probs=186.8
Q ss_pred CCEEEEecCCCcEEEEEcccCcccee-EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeE
Q 018591 66 GNKVFTAHQDSRIRVWKVSRSSENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLI 141 (353)
Q Consensus 66 ~~~l~s~~~dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l 141 (353)
|+++|.|+.|..|.|||++-...... ..+..... +...........-.+|+..|.+++|+. +.|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~s------------k~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVL 259 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKAS------------KKKKKKGKRSNSASGHTDAVLALSWNRNFRNVL 259 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhh------------hhhhhhcccccccccchHHHHHHHhccccceeE
Confidence 78999999999999999875431110 01110000 000000001111237999999999987 899
Q ss_pred EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 142 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
++|+.|.+|++||+.++++...+..|...|.++.|. +..|++|+.|+++.+.|.+.... .-..++. ..-|.
T Consensus 260 aSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----s~~~wk~--~g~VE 333 (463)
T KOG0270|consen 260 ASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----SGKEWKF--DGEVE 333 (463)
T ss_pred EecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----cCceEEe--ccceE
Confidence 999999999999999999999999999999999993 44999999999999999996431 1122222 22258
Q ss_pred EEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceE
Q 018591 219 SVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLC 294 (353)
Q Consensus 219 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~ 294 (353)
.++|.|.. ..++++..||+++-+|++... ++..++..|...|.+++.+ ..++++++.|+.|.+|++..... .
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-K 409 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-c
Confidence 89999864 567888999999999999874 6777888999999999987 67999999999999999876431 1
Q ss_pred EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
.+....-.-+...|.++.|+. --.|+.|+..+.++|||+.+...+..
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~---a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDV---AFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccccccceeecccCCCc---ceEEEecCccceEEEeecccChhHHH
Confidence 222211122346778888874 45888999999999999988765543
No 136
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.6e-24 Score=151.60 Aligned_cols=240 Identities=19% Similarity=0.223 Sum_probs=186.2
Q ss_pred eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--ce---eeEEeccCceeeEEEEEe------CCEEEEecCCCcE
Q 018591 12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--LR---MFTKFGHGDGSVKAVVTV------GNKVFTAHQDSRI 78 (353)
Q Consensus 12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--~~---~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~i 78 (353)
-+.|.+.|+|.+|+ |+++++|+.|.+|++..+.. .. .-.++.-|.+.|..++|- +..|++++. |..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc 163 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA-GDC 163 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC-Ccc
Confidence 45799999999997 99999999999999976543 22 224577789999999994 445666553 455
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE-EEeCCeEEEecCCCcEEEEEcCC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL-TVYNGLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~dg~v~iwd~~~ 157 (353)
++|-.+-+... ....+.+|++.|.++ .|+.-++++|+.|.+|++||++-
T Consensus 164 ~iy~tdc~~g~------------------------------~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 164 KIYITDCGRGQ------------------------------GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred eEEEeecCCCC------------------------------cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec
Confidence 55544333211 223334899999887 46669999999999999999999
Q ss_pred ceeeeeccc--c-----CcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 158 LKCLESIKA--H-----DDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 158 ~~~~~~~~~--~-----~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
..++..+.. | ...|.+++.. +.+|++|-.|....+||++.++ ..+.+..|...+ .++.|+|...+
T Consensus 214 ~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phsadi-r~vrfsp~a~y 287 (350)
T KOG0641|consen 214 NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHSADI-RCVRFSPGAHY 287 (350)
T ss_pred cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCccce-eEEEeCCCceE
Confidence 888887742 2 3578888883 3488999999999999999998 888888898877 99999999999
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecC
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~ 288 (353)
+++++.|..|++-|+...............|...+..+.|. .--+++.+.|.++.+|-+.
T Consensus 288 llt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 288 LLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999987543333444556677777777775 4467888999999999764
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=5.8e-24 Score=172.36 Aligned_cols=271 Identities=15% Similarity=0.151 Sum_probs=184.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
++.+++++.|+.|++||+.+++.+..+..+.. +..+.|+ ++.+ ++++.++.|++||..+++ ....++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~---- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-----VIGTLP---- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc-----EEEecc----
Confidence 46789999999999999999999888876543 5678887 5555 567788999999998765 221111
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK- 178 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~- 178 (353)
.+ ..+..+.+++ +.++ +++.++.+++||+.+.+.+..+.. ...+.++++++
T Consensus 71 -----------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d 125 (300)
T TIGR03866 71 -----------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD 125 (300)
T ss_pred -----------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence 11 1235677877 4454 456689999999998887777653 33467888833
Q ss_pred C-eEEEEcCCC-cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeeeee
Q 018591 179 G-IVYSASADG-KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLACE 255 (353)
Q Consensus 179 ~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~ 255 (353)
+ .+++++.++ .+.+||.++.+ ........ ..+ ..++|+|++++++++ ..++.|++||+++++........
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~-----~~~~~~~~-~~~-~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYE-----IVDNVLVD-QRP-RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCe-----EEEEEEcC-CCc-cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 3 676776654 46778987765 22222222 223 779999999988654 46899999999887432221111
Q ss_pred ccc-c--c--eeEEEEEEcCcEEEE-ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc-cCC
Q 018591 256 TKA-H--E--MAVLCVCLVGEFLCS-GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG-SLD 328 (353)
Q Consensus 256 ~~~-~--~--~~v~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~-~~d 328 (353)
... + . ..-.+++++++++++ .+.++.+.+||.++++. +..+ .+...+.+++|+|+ +++|+++ +.+
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---~~~~-~~~~~~~~~~~~~~----g~~l~~~~~~~ 270 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV---LDYL-LVGQRVWQLAFTPD----EKYLLTTNGVS 270 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE---EEEE-EeCCCcceEEECCC----CCEEEEEcCCC
Confidence 100 0 1 112345667777544 45577899999987763 2222 23457999999999 8888876 569
Q ss_pred CeEEEEEcCCCCCccccc
Q 018591 329 KSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 329 g~i~iw~~~~~~~~~~~~ 346 (353)
|.|++||+.+++.+...+
T Consensus 271 ~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 271 NDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CeEEEEECCCCcEEEEEE
Confidence 999999999988766554
No 138
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=6.8e-26 Score=168.06 Aligned_cols=214 Identities=19% Similarity=0.252 Sum_probs=172.7
Q ss_pred eeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------------------eeeeeccccCcceEEEEEeCC-
Q 018591 121 KRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------------------KCLESIKAHDDAVNGLVASKG- 179 (353)
Q Consensus 121 ~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------------------~~~~~~~~~~~~v~~i~~~~~- 179 (353)
...+..|++++.+.+|++ .++++|+.|..|++.|++.. -.++++-.|..+|+++.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 445568999999999999 89999999999999998621 245667789999999999554
Q ss_pred -eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccc
Q 018591 180 -IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA 258 (353)
Q Consensus 180 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 258 (353)
.|++++.|++|++||+..... ......+. ...++.++.|+|.|.++++|..-..+++||+++-+.-.. ......
T Consensus 185 ~ILiS~srD~tvKlFDfsK~sa--KrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-anPd~q 259 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSA--KRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-ANPDDQ 259 (430)
T ss_pred heEEeccCCCeEEEEecccHHH--HHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-cCcccc
Confidence 899999999999999976541 01111222 233469999999999999999999999999998743222 224567
Q ss_pred cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEecccc-CCC-cCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 259 HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT-GHE-GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 259 ~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~h~-~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
|...|+++.++ +++.++|+.||.|++||--+++ ++.++. +|. ..|.+..|..+ ++++++.+.|..+++|
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---Cv~t~~~AH~gsevcSa~Ftkn----~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---CVRTIGNAHGGSEVCSAVFTKN----GKYILSSGKDSTVKLW 332 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHH---HHHHHHhhcCCceeeeEEEccC----CeEEeecCCcceeeee
Confidence 88999999886 8899999999999999987766 666553 454 46999999999 9999999999999999
Q ss_pred EcCCCCCccccc
Q 018591 335 WVSKQSSTSDSE 346 (353)
Q Consensus 335 ~~~~~~~~~~~~ 346 (353)
++.++..+....
T Consensus 333 Ei~t~R~l~~Yt 344 (430)
T KOG0640|consen 333 EISTGRMLKEYT 344 (430)
T ss_pred eecCCceEEEEe
Confidence 999998887654
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-26 Score=174.88 Aligned_cols=227 Identities=16% Similarity=0.208 Sum_probs=176.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCce---eeEE------------------eccCceeeEEEEEe---CCEEEEecCCCcEEEE
Q 018591 26 GEFILSASQGKDIIVWQQPDLR---MFTK------------------FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~---~~~~------------------~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w 81 (353)
|+++|.|+.|-.|.|||+.-.. +... -.+|+..|.++.|+ .+.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 7899999999999999975211 1111 13688899999998 7889999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL 158 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~ 158 (353)
|+++++ + ...+..|.+.|.++.|+| ..|++|+.|++|.+.|.+..
T Consensus 272 D~~~g~-----p---------------------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 272 DVDTGK-----P---------------------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EcCCCC-----c---------------------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 999987 2 223336999999999998 89999999999999999853
Q ss_pred eeeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecC
Q 018591 159 KCLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGS 234 (353)
Q Consensus 159 ~~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 234 (353)
......-.-.+.|-.++| ++..++++..||+++-+|+|... .+...+..|.+.+ .++++++. ..++++++.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd~~I-Sgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHDDEI-SGLSVNIQTPGLLSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEeccCCc-ceEEecCCCCcceeeccc
Confidence 332222223678889999 45589999999999999999875 3888999999976 99999885 457889999
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCc
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
|+.|++|++............+.-.. ..|++++ ...++.|+..+.+++||+.+..
T Consensus 395 d~~Vklw~~~~~~~~~v~~~~~~~~r--l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKSVKEHSFKLGR--LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cceEEEEeecCCCCcccccccccccc--eeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99999999987644333333333222 4455554 5688899999999999998765
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=5.6e-24 Score=173.69 Aligned_cols=326 Identities=21% Similarity=0.236 Sum_probs=231.0
Q ss_pred ceeeeeeCccCceEEEEE--C---CcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591 7 RSLAVLSGHVGSVSSLAL--C---GEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR 79 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~--~---~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 79 (353)
..+..++||.++|+|+.+ + ..++++|+.||.|++|.++.. ..+..+.+|...+.++.-......+...|+++.
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEE
Confidence 456789999999999999 2 338999999999999998743 345566776666655543333333347899999
Q ss_pred EEEcccCcccee------------EEeeccccccceeeeecccceeEee------cccceeeeeecCCceEEEEEeC---
Q 018591 80 VWKVSRSSENVF------------RLVDTLPTTKDYLGKFMKQSNYVQT------RRHHKRLWIEHADSISCLTVYN--- 138 (353)
Q Consensus 80 ~w~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~--- 138 (353)
+||.+..+.... .++..++....++...-.....+.. .-.....+.||.+.|.+++|..
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 999954431000 1122222222222222222221111 1134556779999999999986
Q ss_pred --CeEEEecCCCcEEEEEcCCce---------------------eee----------eccccCcceEEEEEe-CC-eEEE
Q 018591 139 --GLIYSGSWDKTLKVWRVADLK---------------------CLE----------SIKAHDDAVNGLVAS-KG-IVYS 183 (353)
Q Consensus 139 --~~l~~~~~dg~v~iwd~~~~~---------------------~~~----------~~~~~~~~v~~i~~~-~~-~l~~ 183 (353)
-+|+++++|..|++|.+.-+. ... .+.+|...|+++.|. +. .|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 478999999999999874221 111 123899999999994 44 8999
Q ss_pred EcCCCcEEEEeCCCCCcccccc--eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591 184 ASADGKIKAWGKELGKSHCHSL--KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 184 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
++.|.++.+|...+..-..... +....+.... .....|+|+++.+++-+..|-.++|..+ ....+.......+|..
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G-F~g~lw~~n~~~ii~~g~~Gg~hlWkt~-d~~~w~~~~~iSGH~~ 362 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG-FWGGLWSPNSNVIIAHGRTGGFHLWKTK-DKTFWTQEPVISGHVD 362 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccc-eeeEEEcCCCCEEEEecccCcEEEEecc-Cccceeeccccccccc
Confidence 9999999999877653211111 1122222333 3789999999999999999999999833 3345666777889999
Q ss_pred eEEEEEEc--CcEEEEecCCCeEEEEecC-CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 262 AVLCVCLV--GEFLCSGSADKSIGIWKRE-AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 262 ~v~~~~~~--~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.|..+.|+ |.+|++.+.|.+-|+|-.- .......+...+-|.-.++|++|-+. ...+++|.+...+|+|+...
T Consensus 363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~----~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE----DLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC----CceeeecccceeeeeecCcH
Confidence 99999997 9999999999999998765 22335567777888889999999995 57889999999999998764
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=6.4e-25 Score=163.94 Aligned_cols=285 Identities=15% Similarity=0.204 Sum_probs=203.1
Q ss_pred eeCccCceEEEEEC-------CcEEEEEeCCCcEEEEeCCC-c--eeeEEe--ccCceeeEEEEEe------CCEEEEec
Q 018591 12 LSGHVGSVSSLALC-------GEFILSASQGKDIIVWQQPD-L--RMFTKF--GHGDGSVKAVVTV------GNKVFTAH 73 (353)
Q Consensus 12 l~~h~~~v~~~~~~-------~~~l~s~~~dg~v~vwd~~~-~--~~~~~~--~~~~~~v~~~~~~------~~~l~s~~ 73 (353)
...|..+|..++|+ .+.+++++. ..+.+|.... + ..++.+ +.|......++|. .-+++.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 34688999999995 456777766 5788998653 2 334443 2356677777775 34788999
Q ss_pred CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591 74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL 150 (353)
Q Consensus 74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v 150 (353)
.-|.|++.|+.+++ + ...+.+|...|+.+.+.| +++++++.|..|
T Consensus 113 ~~GvIrVid~~~~~-----~---------------------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQ-----C---------------------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred ceeEEEEEecchhh-----h---------------------------ccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 99999999998876 1 223348999999999999 699999999999
Q ss_pred EEEEcCCceeeeec---cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccc-ccc-------------------
Q 018591 151 KVWRVADLKCLESI---KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHC-HSL------------------- 205 (353)
Q Consensus 151 ~iwd~~~~~~~~~~---~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~------------------- 205 (353)
++||+++..++..+ .+|...|.++.| .++++++++.|.+|++|++...+... ...
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 99999999999887 679999999999 45599999999999999998443100 000
Q ss_pred ---eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc-ccc---------ceeeeeeccccce--eEEEEEEc-
Q 018591 206 ---KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV-EIV---------RWKLACETKAHEM--AVLCVCLV- 269 (353)
Q Consensus 206 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~---------~~~~~~~~~~~~~--~v~~~~~~- 269 (353)
......|...+ .|+.|- |+++++-+-++.|..|.... ++. ......++..... .-..++++
T Consensus 241 fp~fst~diHrnyV-DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~ 317 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYV-DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP 317 (385)
T ss_pred cccccccccccchH-HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence 00111222322 444444 56889988899999998722 111 1112222222222 23444445
Q ss_pred -CcEEEEecCCCeEEEEecCCCcceEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 270 -GEFLCSGSADKSIGIWKREAFGKLCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 270 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
++.||.|...|.|++||+++.+... ..++. .-...|...+|+.| +.+|+...+|++|.-||.-
T Consensus 318 ~~~~la~gnq~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS~d----gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFSRD----GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHHhhccCCCcEEEEECCCCCCcc-CceEEeccccceeeeeeeccc----CcEEEEEeCCCcEEEEEee
Confidence 7899999999999999999876431 11221 22457999999999 9999999999999999854
No 142
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6e-25 Score=164.90 Aligned_cols=276 Identities=15% Similarity=0.230 Sum_probs=197.1
Q ss_pred cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
..+|++-+.|.|++||..+++.+..+++++..++.+.|. +..+.+++.||+|++||++...+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a------------ 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA------------ 108 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh------------
Confidence 568899999999999999999999999999999999886 5789999999999999998765321
Q ss_pred eeeeecccceeEeecccceeeeeecC-CceEEEEEeC--CeEEEec----CCCcEEEEEcCCcee-eeec-cccCcceEE
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN--GLIYSGS----WDKTLKVWRVADLKC-LESI-KAHDDAVNG 173 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~~~~----~dg~v~iwd~~~~~~-~~~~-~~~~~~v~~ 173 (353)
...+.+++ .+..|++.+- +.+++|+ .+-.|.+||++..+. +..+ +.|...|++
T Consensus 109 ------------------~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 109 ------------------RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ 170 (376)
T ss_pred ------------------heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence 11222344 5677777763 6666664 467899999998766 5544 679999999
Q ss_pred EEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccc
Q 018591 174 LVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVR 249 (353)
Q Consensus 174 i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 249 (353)
+.| .+++|++|+.||-+.+||++.... ...+..++ .+... |..+.|..++ +.+.+-+..+...+|+++.+...
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~vi-N~~sS-I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-EDALLHVI-NHGSS-IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcc-hhhHHHhh-cccce-eeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 999 456999999999999999986641 11222222 23333 5899998876 56888889999999999887533
Q ss_pred eeeeeecc---------ccceeEEEEEEc-CcEEEEecC-CCeEEEEecC---CCcceEEeccccC-CCcCeEEEEeecC
Q 018591 250 WKLACETK---------AHEMAVLCVCLV-GEFLCSGSA-DKSIGIWKRE---AFGKLCRVGAITG-HEGPVKCLQASPN 314 (353)
Q Consensus 250 ~~~~~~~~---------~~~~~v~~~~~~-~~~l~~~~~-dg~i~iw~~~---~~~~~~~~~~~~~-h~~~v~~~~~~~~ 314 (353)
........ .-..-|-+..+. ....+.++. -|...++-+. ++.....+..+++ |..-|+++.|...
T Consensus 248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 22221100 111223344343 344444443 5666666543 3333445566666 7778899999877
Q ss_pred CCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 315 AVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 315 ~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+.++.||++||.+.+|..+..
T Consensus 328 ----~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 328 ----NDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ----cceeeccCCCceEEEEecCCc
Confidence 899999999999999996443
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=181.80 Aligned_cols=244 Identities=19% Similarity=0.245 Sum_probs=193.3
Q ss_pred ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc
Q 018591 53 GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS 130 (353)
Q Consensus 53 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (353)
..|....+.++|+ |++|++++.||.|++|+.....+.+- .+..+...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-------------------------------ti~~~g~~ 58 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-------------------------------TIDISGEL 58 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-------------------------------hhhccCce
Confidence 3577778889997 88999999999999999766531110 01127778
Q ss_pred eEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591 131 ISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 131 i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 208 (353)
|.+++...++|++|+.+++|.+|...+++.-..+....-++.+++++ +.+++.|+.|-.|++-+..+.. ....
T Consensus 59 v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-----~~~~ 133 (933)
T KOG1274|consen 59 VSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-----QEKV 133 (933)
T ss_pred eEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----hhee
Confidence 88999888999999999999999998887665555567889999994 4499999999999999999887 6788
Q ss_pred eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc----ceeE--EEEEEcCcEEEEecCCCeE
Q 018591 209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH----EMAV--LCVCLVGEFLCSGSADKSI 282 (353)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~v--~~~~~~~~~l~~~~~dg~i 282 (353)
+++|...+ .++.|+|++++||+.+.||.|++||+..+.....+....+.. ...+ .++.|++..++....|+.|
T Consensus 134 lrgh~apV-l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 134 LRGHDAPV-LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred ecccCCce-eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence 89998877 999999999999999999999999999874333222221111 2223 3444557788888999999
Q ss_pred EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.+|+..+++....+.. ..+...+..+.|+|. |+|||+++.||.|.|||+++
T Consensus 213 kvy~r~~we~~f~Lr~-~~~ss~~~~~~wsPn----G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 213 KVYSRKGWELQFKLRD-KLSSSKFSDLQWSPN----GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEccCCceeheeecc-cccccceEEEEEcCC----CcEEeeeccCCcEEEEeccc
Confidence 9999998875444432 234445999999999 99999999999999999996
No 144
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.6e-25 Score=175.19 Aligned_cols=253 Identities=22% Similarity=0.348 Sum_probs=194.3
Q ss_pred cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCce
Q 018591 54 HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI 131 (353)
Q Consensus 54 ~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 131 (353)
.|...|.++.++ .+++++|+. |.|+|||+....... .+..++.. .....|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~--PvsqLdcl-------------------------~rdnyi 468 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS--PVSQLDCL-------------------------NRDNYI 468 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC--cccccccc-------------------------Ccccce
Confidence 467778888887 678899887 799999997653111 11111110 234567
Q ss_pred EEEEEeC--CeEEEecCCCcEEEEEcCCceee--eeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccc
Q 018591 132 SCLTVYN--GLIYSGSWDKTLKVWRVADLKCL--ESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSL 205 (353)
Q Consensus 132 ~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~ 205 (353)
.++...+ +.|++|+.-.++.|||+....+. .++.......++++.+++ ..+++..||.|.|||+.+.. +
T Consensus 469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----~ 543 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----L 543 (705)
T ss_pred eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----e
Confidence 7777777 89999999999999999765443 333333345666777544 88899999999999999987 8
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEE
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIG 283 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~ 283 (353)
.+.+++|.+.. .|+.++++|..|.+|+-|.+|+.||++.+....+ ......|.++ +|.+..|++|..++.+.
T Consensus 544 VrqfqGhtDGa-scIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 544 VRQFQGHTDGA-SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred eecccCCCCCc-eeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeecccCcEE
Confidence 99999999998 9999999999999999999999999998742211 1123344444 55699999999999999
Q ss_pred EEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCC-CcccC
Q 018591 284 IWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK-SIISC 353 (353)
Q Consensus 284 iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~c 353 (353)
+-.....+ ...+.-|++.|.++.|.+. |+++++.+.|+-+..|...-+..+.+.++. +.++|
T Consensus 618 vlh~skp~----kyqlhlheScVLSlKFa~c----GkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsC 680 (705)
T KOG0639|consen 618 VLHTSKPE----KYQLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC 680 (705)
T ss_pred EEecCCcc----ceeecccccEEEEEEeccc----CceeeecCchhhhhhccCccccceeeccccCcceee
Confidence 98876554 2335669999999999999 999999999999999999999988877654 45554
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=165.11 Aligned_cols=203 Identities=21% Similarity=0.314 Sum_probs=163.3
Q ss_pred eeeCccCceEEEEEC----CcEEEEEeCCCcEEEEeCCC----------------ceeeEEeccCceeeEEEEEe---CC
Q 018591 11 VLSGHVGSVSSLALC----GEFILSASQGKDIIVWQQPD----------------LRMFTKFGHGDGSVKAVVTV---GN 67 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~---~~ 67 (353)
..-+|.+.++-+..+ ..+.++=+..|.|.||++.. .+++.++.+|.+.=++++|+ ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344677777777664 34666677889999999642 35677888999888999998 46
Q ss_pred EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEe
Q 018591 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSG 144 (353)
Q Consensus 68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~ 144 (353)
.|++|.--+.|++|...++.- . + ..+-+.+|+..|-.+.|+| +.|++|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W---~-v-------------------------d~~Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSW---K-V-------------------------DQRPFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred ccccCccccceEeeeeccCce---e-e-------------------------cCccccccccchhhhccCCccCceEEee
Confidence 689998889999999988641 1 1 1122338999999999999 899999
Q ss_pred cCCCcEEEEEcCCc---eeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591 145 SWDKTLKVWRVADL---KCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS 219 (353)
Q Consensus 145 ~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (353)
+.||+|+|||++.+ .++.+ +.|.+.|+.|.|+.. +|++|+.||+++|||+++-+.. .+...++.|...+ ++
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~fk~Hk~pI-ts 352 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVATFKYHKAPI-TS 352 (440)
T ss_pred ecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--CcceeEEeccCCe-eE
Confidence 99999999999987 34444 789999999999443 8999999999999999977632 5777888898876 99
Q ss_pred EEEcCC-CCeEEeecCCCcEEEeecccc
Q 018591 220 VVVSDD-GKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 220 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~ 246 (353)
+.|+|. ...|++++.|..|.+||+...
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeecc
Confidence 999995 567889999999999998764
No 146
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.5e-24 Score=185.57 Aligned_cols=263 Identities=21% Similarity=0.294 Sum_probs=196.4
Q ss_pred ccCceeeEEEEEe--CCEEEEec--CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591 53 GHGDGSVKAVVTV--GNKVFTAH--QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA 128 (353)
Q Consensus 53 ~~~~~~v~~~~~~--~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
.|+...|.++..+ +..+++|+ .||.+++|+.+.--......-.. ..........|.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~--------------------l~k~l~~m~~h~ 69 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN--------------------LPKHLCTMDDHD 69 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcc--------------------cchhheeecccc
Confidence 4556778888876 78899999 99999999975421000000000 112233444899
Q ss_pred CceEEEEEeC--CeEEEecCCCcEEEEEcCC------------------ceeeeeccccCcceEEEEEeCC--eEEEEcC
Q 018591 129 DSISCLTVYN--GLIYSGSWDKTLKVWRVAD------------------LKCLESIKAHDDAVNGLVASKG--IVYSASA 186 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~ 186 (353)
+.|+|+.|++ .+||+|+.|+.|.+|+... .+++..+.+|...|..++|+++ ++++++.
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence 9999999999 8999999999999998762 2366778899999999999543 9999999
Q ss_pred CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc--ccceeE-
Q 018591 187 DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK--AHEMAV- 263 (353)
Q Consensus 187 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~v- 263 (353)
|++|.+||.++.+ ....+.+|...+ ..+.|.|-|++|++-+.|++|++|.+..-.........+. ......
T Consensus 150 DnsViiwn~~tF~-----~~~vl~~H~s~V-KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 150 DNSVIIWNAKTFE-----LLKVLRGHQSLV-KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred cceEEEEccccce-----eeeeeecccccc-cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999987 889999999987 9999999999999999999999999665321111111111 111222
Q ss_pred -EEEEEcCcEEEEecC----CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC---CC-C-----CC----eEEEEc
Q 018591 264 -LCVCLVGEFLCSGSA----DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN---AV-G-----GG----FLLYSG 325 (353)
Q Consensus 264 -~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~-~-----~~----~~l~s~ 325 (353)
.+++|+|.+|++.-. -.++.|.+..+.+ .-..+-||.+++.++.|+|. .+ + .. ..+|+|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCce---eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 455667999998643 3468888876665 55668899999999999984 11 0 01 278999
Q ss_pred cCCCeEEEEEcCCCCCccc
Q 018591 326 SLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 326 ~~dg~i~iw~~~~~~~~~~ 344 (353)
|.|++|-||.....+++..
T Consensus 301 SqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred cCCccEEEEecCCCCchhh
Confidence 9999999999987776653
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.1e-26 Score=190.19 Aligned_cols=204 Identities=25% Similarity=0.433 Sum_probs=179.4
Q ss_pred ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcc
Q 018591 126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSH 201 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~ 201 (353)
.|...+.++..-. ..+++|+.|..+-+|.+.....+..+.+|..+|.++.| ...++++|+.+|+|++||+...+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-- 103 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-- 103 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh--
Confidence 6888888888644 88999999999999999888888889999999999999 44589999999999999999887
Q ss_pred cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEE--EEEcCcEEEEecCC
Q 018591 202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLC--VCLVGEFLCSGSAD 279 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d 279 (353)
..+.+.+|...+ .++.|+|-+.+++.|+.|..+.+||.+.. .+...+.+|...+.+ +.|+|++++.|+.|
T Consensus 104 ---~vrtLtgh~~~~-~sv~f~P~~~~~a~gStdtd~~iwD~Rk~----Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 104 ---IVRTLTGHLLNI-TSVDFHPYGEFFASGSTDTDLKIWDIRKK----GCSHTYKSHTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred ---hhhhhhccccCc-ceeeeccceEEeccccccccceehhhhcc----CceeeecCCcceeEEEeecCCCceeeccCCc
Confidence 788999999887 99999999999999999999999999965 466666777766554 56679999999999
Q ss_pred CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
..++|||...++ .+.++..|++.+.++.|+|. .-++++||.|+++++||+++.+.+.+.+
T Consensus 176 ~tvki~d~~agk---~~~ef~~~e~~v~sle~hp~----e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 176 NTVKIWDLTAGK---LSKEFKSHEGKVQSLEFHPL----EVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ceeeeecccccc---cccccccccccccccccCch----hhhhccCCCCceeeeeccceeEEeeccC
Confidence 999999999888 78889999999999999999 8899999999999999999776665444
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.2e-24 Score=165.28 Aligned_cols=208 Identities=21% Similarity=0.300 Sum_probs=166.9
Q ss_pred ecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC----------------ceeeeeccccCcceEEEEEeC---CeEE
Q 018591 126 EHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD----------------LKCLESIKAHDDAVNGLVASK---GIVY 182 (353)
Q Consensus 126 ~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~i~~~~---~~l~ 182 (353)
.|.+.++-+...+ .+.++=+..|.|++||+.. .+++.++.+|...=++++|++ +.++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 5666666666555 4666668899999999853 346777888999999999965 4788
Q ss_pred EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
+|.--+.|++|...++. ...-...+.+|...+ ..++|||. ...|++++.||.|+|||++.+...... ..+.|..
T Consensus 229 sGDc~~~I~lw~~~~g~--W~vd~~Pf~gH~~SV-EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~--~~kAh~s 303 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGS--WKVDQRPFTGHTKSV-EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV--STKAHNS 303 (440)
T ss_pred cCccccceEeeeeccCc--eeecCccccccccch-hhhccCCccCceEEeeecCceEEEEEecCCCcccee--EeeccCC
Confidence 88888999999988865 222334566687776 99999996 468899999999999999987433222 3378888
Q ss_pred eEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 262 AVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 262 ~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
.|..++|+ -.+||+|+.||+++|||++..+.-.++..++-|..+|+++.|+|.. ...++++|.|..|.+||+.-.
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e---~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE---DSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc---CceEEeccCCCcEEEEEeecc
Confidence 99999998 3389999999999999999877667888999999999999999973 568888999999999998755
Q ss_pred CC
Q 018591 340 SS 341 (353)
Q Consensus 340 ~~ 341 (353)
..
T Consensus 381 ~D 382 (440)
T KOG0302|consen 381 AD 382 (440)
T ss_pred CC
Confidence 43
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=3.8e-24 Score=173.55 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=103.1
Q ss_pred eeEEEEcC-CCCeEEeecCCCcEEEeeccccc---cceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCC
Q 018591 217 LNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEI---VRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 217 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~ 289 (353)
|+.+.|.| |...|++++.||.|++|.+..+. ........+..|...|+++.|. .+.|++++.|-+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 57788888 56789999999999999987753 2334556678899999999987 67999999999999999999
Q ss_pred CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
.+ ....+.+|++.|..++|+|+ |+.+++.+.||+|++|+-.+++..-
T Consensus 710 ~~---~~~~l~gHtdqIf~~AWSpd----Gr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 710 AK---LYSRLVGHTDQIFGIAWSPD----GRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred hh---hhheeccCcCceeEEEECCC----CcceeeeecCceEEEeCCCCCCCcc
Confidence 87 56678999999999999999 9999999999999999988766543
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=6e-24 Score=172.00 Aligned_cols=271 Identities=18% Similarity=0.203 Sum_probs=187.5
Q ss_pred eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEE--eccCceeeEEEEEe---CCEEEEecCCCcEEEE
Q 018591 9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w 81 (353)
+.....|..+|..+.|- ...|++++.|.++++||+++.++... +.+|.+.|.+++|. ...+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 45667899999999995 56899999999999999999998877 89999999999997 6789999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc----eEEEEEeC-CeEEEecC-CCcEEEEEc
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS----ISCLTVYN-GLIYSGSW-DKTLKVWRV 155 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~-~~l~~~~~-dg~v~iwd~ 155 (353)
|++-.......... .......-.............+.+..+... |+.+.|-. ..|++++. |+.|++||+
T Consensus 173 D~R~n~~d~~e~~~-----~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 173 DCRCNGVDALEEFD-----NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred EEeccchhhHHHHh-----hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 99765411100000 000000000000111111222333344444 44556655 88888887 999999999
Q ss_pred CCceeeeec--------ccc---CcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce-eeEEE
Q 018591 156 ADLKCLESI--------KAH---DDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS-LNSVV 221 (353)
Q Consensus 156 ~~~~~~~~~--------~~~---~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~ 221 (353)
+........ .-| .-.+.++.. .+.+|++.+.|+.|+.||+..... .+...+.++.... ...-.
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~---sP~~~~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI---SPVAEFSGKLNSSFYVKSE 324 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc---CchhhccCcccceeeeeee
Confidence 875543322 122 234566666 345777777799999999987652 2333444443222 13345
Q ss_pred EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCC
Q 018591 222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~ 290 (353)
.+|++.++++|+.|....+|.+.... .....+.+|...|+++.|. -.-+++++.|..+++|++.++
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e---~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPE---APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCcc---CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 68999999999999999999998863 4455677899999999885 335677799999999999654
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=9.3e-24 Score=166.28 Aligned_cols=263 Identities=16% Similarity=0.157 Sum_probs=194.7
Q ss_pred CCCcEEEEeCCCceeeEEeccC--ceeeEEEEEe-CCEEEEe--cCCCcEEEEEcccCccceeEEeeccccccceeeeec
Q 018591 34 QGKDIIVWQQPDLRMFTKFGHG--DGSVKAVVTV-GNKVFTA--HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM 108 (353)
Q Consensus 34 ~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~-~~~l~s~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
....+++||+...+....+.+| ...+.+++|. .+.|+++ +.|..+++|.-.... ..+..+....
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-~~Vp~~~k~~---------- 78 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-PEVPRVRKLT---------- 78 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC-Cccceeeccc----------
Confidence 3347999999887777666555 3358888888 5545554 466778888765442 1222222211
Q ss_pred ccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEE
Q 018591 109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSA 184 (353)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~ 184 (353)
+. .-.|++... .++++|+..+.|+|||++...+.+.++.|...|+++.+ .+.+++++
T Consensus 79 -----------------gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsv 139 (673)
T KOG4378|consen 79 -----------------GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASV 139 (673)
T ss_pred -----------------cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEe
Confidence 11 222333322 78999999999999999987788889999999999999 45599999
Q ss_pred cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV 263 (353)
Q Consensus 185 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 263 (353)
+..|.|.+..+.++. ....+....+..+.-+.|+|..+ +|.+++.+|.|.+||+....+ .......|..+.
T Consensus 140 s~gGdiiih~~~t~~-----~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~ 211 (673)
T KOG4378|consen 140 SDGGDIIIHGTKTKQ-----KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPC 211 (673)
T ss_pred ccCCcEEEEecccCc-----cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCc
Confidence 999999999999886 45566666566668899999765 466789999999999988642 223345566665
Q ss_pred EEE--EEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 264 LCV--CLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 264 ~~~--~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
..+ +|. ..+|++.+.|..|.+||........++ ....+.++++|+++ |.+|+.|...|.|..||++..+
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l----~y~~Plstvaf~~~----G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL----TYSHPLSTVAFSEC----GTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccccccee----eecCCcceeeecCC----ceEEEeecCCceEEEEecccCC
Confidence 444 443 678999999999999999876532222 34678999999999 9999999999999999998765
Q ss_pred Cc
Q 018591 341 ST 342 (353)
Q Consensus 341 ~~ 342 (353)
..
T Consensus 284 ~P 285 (673)
T KOG4378|consen 284 AP 285 (673)
T ss_pred CC
Confidence 43
No 152
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=160.22 Aligned_cols=292 Identities=10% Similarity=0.105 Sum_probs=207.6
Q ss_pred eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC------ceeeEEec-cCceeeEEEEEe--CCEEEEecCCCcE
Q 018591 10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD------LRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDSRI 78 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~------~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i 78 (353)
+-+.+|.+.|+++.|+ +++|++|+.|..+++|+++. .+++.... +|...|.+++|+ +.++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4567999999999996 89999999999999999753 35555554 456899999999 6789999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~ 156 (353)
..-|+++.+ .+..+.. ....+.|..+..+| +.+++.+.++.|.+||.+
T Consensus 130 I~HDiEt~q-----si~V~~~-------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 130 IKHDIETKQ-----SIYVANE-------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred Eeeecccce-----eeeeecc-------------------------cCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 999999876 2221110 02345899999999 899999999999999998
Q ss_pred Cce-eeee--ccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccce--eeeeccCCceeeEEEEcCCCCe
Q 018591 157 DLK-CLES--IKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLK--GILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 157 ~~~-~~~~--~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
... .... +.........+.| .|.+|++.+..+.+.+||.+.........- ..+..... ....+.|+|+|..
T Consensus 180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~-~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT-EWMGSLWSPSGNQ 258 (609)
T ss_pred CCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch-hhhheeeCCCCCe
Confidence 654 2221 1223455667777 345899999999999999987652111110 01111111 1257889999999
Q ss_pred EEeecCCCcEEEeeccccccc-eeeeeeccc--cceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcc------------
Q 018591 229 VYGGGSDGFVMGWEGNVEIVR-WKLACETKA--HEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGK------------ 292 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~--~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~------------ 292 (353)
+++--....-.+||+.+..+. ++.-....+ ....+.++.+- ...+++|+.+-.|++|.+.....
T Consensus 259 ~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchh
Confidence 998877777788888774211 111100001 12234455553 45699999999999998753210
Q ss_pred --------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 293 --------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 293 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
-..+..++||.+-++.+.|+|. ..+|++.+-...+++|.-
T Consensus 339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H----~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQH----NNLLVSSGVENSFKLWSD 386 (609)
T ss_pred hCchhheecceeEEEecccccccceeecCC----cceEeccchhhheecccc
Confidence 1234568899999999999999 889999999999999963
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.9e-23 Score=162.82 Aligned_cols=253 Identities=15% Similarity=0.198 Sum_probs=188.6
Q ss_pred ceEEEEEC-CcEEEEEe--CCCcEEEEeCCC--ce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcc
Q 018591 18 SVSSLALC-GEFILSAS--QGKDIIVWQQPD--LR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSE 88 (353)
Q Consensus 18 ~v~~~~~~-~~~l~s~~--~dg~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~ 88 (353)
.+.++.|+ .++|++++ .|..+++|.-.. ++ .+....+. .-.|++.. ..++++|+..+.|+|||+....
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl- 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL- 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH-
Confidence 48889996 55466554 577899997322 22 22223332 22233222 5789999999999999998543
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
+. +.+.+|+..|+++.++. .+|++++..|.|.+..+.++.....|..
T Consensus 113 ----~h---------------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 113 ----IH---------------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred ----Hh---------------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 21 22238999999999998 8999999999999999999888777765
Q ss_pred c-CcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEe
Q 018591 167 H-DDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGW 241 (353)
Q Consensus 167 ~-~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~ 241 (353)
. ...|.-+.+++. +|.+++.+|.|.+||+.... +.....+.|..+. ..++|+|. ..+|++.+.|..|.+|
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s----p~~~~~~~HsAP~-~gicfspsne~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS----PIFHASEAHSAPC-RGICFSPSNEALLVSVGYDKKINIY 236 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC----cccchhhhccCCc-CcceecCCccceEEEecccceEEEe
Confidence 4 345557777443 88899999999999998776 2334445565554 89999995 5678899999999999
Q ss_pred eccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 242 EGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 242 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
|.........+ ...|+....++..+|.+|++|...|.|..||++..+. ++..+..|...|++++|-|.
T Consensus 237 D~~s~~s~~~l---~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 237 DIRSQASTDRL---TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred eccccccccee---eecCCcceeeecCCceEEEeecCCceEEEEecccCCC--CceEeeecccceeEEEeeec
Confidence 99876322222 2345566677777899999999999999999998665 67778899999999999986
No 154
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=150.44 Aligned_cols=269 Identities=19% Similarity=0.205 Sum_probs=186.6
Q ss_pred EEEEeCCCcee-----eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 38 IIVWQQPDLRM-----FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 38 v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
.+-|+.+.... +..+++|.+.|++++|+ |.+|++++.|+.|++|+++.-....-++++.-
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n------------- 129 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN------------- 129 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-------------
Confidence 44565544333 34568999999999998 89999999999999999986432211111110
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce---eee---------eccccCcceEEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK---CLE---------SIKAHDDAVNGLV 175 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~---~~~---------~~~~~~~~v~~i~ 175 (353)
-.-+.-+.+.|.| ..+++.-....+++|-+...+ ... .-+.|.-.+..+-
T Consensus 130 ---------------ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG 194 (420)
T KOG2096|consen 130 ---------------VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG 194 (420)
T ss_pred ---------------ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEe
Confidence 0112345678888 566666677789999764321 110 1123555666666
Q ss_pred EeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc----cc
Q 018591 176 ASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI----VR 249 (353)
Q Consensus 176 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~ 249 (353)
..++ ++++++.|..|.+|+++ ++ .+.......... ...+.||+|+++++++....|++|.+--.+ ..
T Consensus 195 iA~~~k~imsas~dt~i~lw~lk-Gq-----~L~~idtnq~~n-~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqe 267 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLK-GQ-----LLQSIDTNQSSN-YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQE 267 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecC-Cc-----eeeeeccccccc-cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhh
Confidence 6333 89999999999999999 55 566666665555 788999999999999999999999863221 22
Q ss_pred eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC----cceEEeccc----cCCCcCeEEEEeecCCCCCC
Q 018591 250 WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF----GKLCRVGAI----TGHEGPVKCLQASPNAVGGG 319 (353)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~ 319 (353)
......+++|...|..++|+ ...+++.+.||++++||.+-. +.+..+.+. ....+.-..++.+|. |
T Consensus 268 v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~----g 343 (420)
T KOG2096|consen 268 VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS----G 343 (420)
T ss_pred hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCC----C
Confidence 34566789999999988886 679999999999999997531 222222222 222334458999999 8
Q ss_pred eEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 320 FLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 320 ~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+.|+.+.. ..++++..++++...+.+
T Consensus 344 ~~lA~s~g-s~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 344 DSLAVSFG-SDLKVFASEDGKDYPELE 369 (420)
T ss_pred cEEEeecC-CceEEEEcccCccchhHH
Confidence 88887654 479999999887666554
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=8e-22 Score=151.52 Aligned_cols=302 Identities=16% Similarity=0.190 Sum_probs=203.2
Q ss_pred cCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc---------eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591 16 VGSVSSLALC---GEFILSASQGKDIIVWQQPDL---------RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW 81 (353)
Q Consensus 16 ~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w 81 (353)
..+|.++.|. .+.++||+.|..|++|.+..+ +.+..+..|...|+++.|+ |+.|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4689999994 448999999999999986532 2445678899999999998 7799999999999999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
....-.. . +... ............+.+.+|...|..++|++ ..+++++.|+.+++||+..++
T Consensus 93 k~~~~~~-----~---~~d~--------e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 93 KQGDVRI-----F---DADT--------EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EecCcCC-----c---cccc--------hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 9764110 0 0000 00000011122345568999999999999 899999999999999999999
Q ss_pred eeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCccc----------------ccceeeeeccC-CceeeEE
Q 018591 160 CLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHC----------------HSLKGILEGHK-DVSLNSV 220 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~-~~~v~~~ 220 (353)
....+..|...+..++|. +.++++-+.|...+.+.+...+... ....+.+.... ..-...+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999993 3478888888766666654433100 00011111111 0112568
Q ss_pred EEcCCCCeEEeecC----CC-----cEEEeeccccccceeeeeeccccceeEEEEEEc-------------------CcE
Q 018591 221 VVSDDGKWVYGGGS----DG-----FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-------------------GEF 272 (353)
Q Consensus 221 ~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~ 272 (353)
+|+|+|.++++... .+ ..++|+-... ..+...++....+...+.+. -++
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l---~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL---KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccc---cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 89999998887542 12 2344443321 12223333322222222211 123
Q ss_pred EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 273 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
+++....+.|++||.++...+..+.. -|-.+|++++|+++ |..|+..|.||...+-.++..+.-
T Consensus 314 vfaiAt~~svyvydtq~~~P~~~v~n--ihy~~iTDiaws~d----g~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 314 VFAIATKNSVYVYDTQTLEPLAVVDN--IHYSAITDIAWSDD----GSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEEEeecceEEEeccccccceEEEee--eeeeeecceeecCC----CcEEEEeccCCceEEEEEcchhcc
Confidence 33333456799999998776555544 37789999999999 999999999999888877776554
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=181.43 Aligned_cols=237 Identities=19% Similarity=0.284 Sum_probs=191.6
Q ss_pred cCceEEEEEC--Cc----EEEEEeCCCcEEEEeCCC------ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEE
Q 018591 16 VGSVSSLALC--GE----FILSASQGKDIIVWQQPD------LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRV 80 (353)
Q Consensus 16 ~~~v~~~~~~--~~----~l~s~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~ 80 (353)
...-+.++|. +. +||.|..||.|.+||... ...+.....|.+.|..+.|+ ++.|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 3467788884 33 589999999999999654 23556678899999999998 779999999999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~ 157 (353)
||++..+.. +... . ....+.|.+++|+. ..|++++.+|.+.|||++.
T Consensus 144 WDlnn~~tP-~~~~----~-------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 144 WDLNKPETP-FTPG----S-------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK 193 (1049)
T ss_pred eccCCcCCC-CCCC----C-------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence 999875411 1000 0 03567899999998 7899999999999999999
Q ss_pred ceeeeeccccCc--ceEEEEEeCC---eEEEEcCCC---cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-Ce
Q 018591 158 LKCLESIKAHDD--AVNGLVASKG---IVYSASADG---KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KW 228 (353)
Q Consensus 158 ~~~~~~~~~~~~--~v~~i~~~~~---~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 228 (353)
.+++..+..+.. .+..+.|+++ .+++++.|. .|.+||+|... .+.+++++|...+ .++.|++.+ ++
T Consensus 194 ~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----sP~k~~~~H~~Gi-lslsWc~~D~~l 268 (1049)
T KOG0307|consen 194 KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----SPLKILEGHQRGI-LSLSWCPQDPRL 268 (1049)
T ss_pred CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC----Cchhhhcccccce-eeeccCCCCchh
Confidence 888877765544 4778899655 677776654 48999999776 4778889999887 999999966 89
Q ss_pred EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCc
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
+++++.|+.|.+|+.+++ +....+.....++..+.|. ...+++++-||.|.||.+....
T Consensus 269 llSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999998 6777777777888888886 5589999999999999998754
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.5e-21 Score=138.39 Aligned_cols=281 Identities=13% Similarity=0.159 Sum_probs=190.7
Q ss_pred eEEEEEC--CcEEEEEeCCCcEEEEeCCC---------c-eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccC
Q 018591 19 VSSLALC--GEFILSASQGKDIIVWQQPD---------L-RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 19 v~~~~~~--~~~l~s~~~dg~v~vwd~~~---------~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~ 86 (353)
|.+-+++ +++|++|..+|.|-+..+.+ + ..+-...+|.++|+.+.|...+|++|+. |.|+-|..+..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Confidence 4444554 88999999999999998753 1 2344558899999999999999999886 99999998765
Q ss_pred cccee-EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee
Q 018591 87 SENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES 163 (353)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~ 163 (353)
.+... +.+-... .+.+.-...-..|+++...| +-++.++.|+.++-||+++++..++
T Consensus 92 ~es~~~K~lwe~~--------------------~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 92 EESLATKRLWEVK--------------------IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hhhccchhhhhhc--------------------CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 43100 0000000 00000012335788898887 7777777999999999999999999
Q ss_pred ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcc----cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSH----CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
+++|+..|.++.- ..+.+++|+.||++|+||.++.+.. .......++.+.+.-|.+++.+ ..++++|+ ...
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPK 228 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCc
Confidence 9999999999998 4559999999999999999998721 0011112222333333455544 55777765 456
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (353)
+.+|.++.... ...++ .+..+..+.|..+.+++++..+.|.-|.+..- + -..........++..|+...
T Consensus 229 lslwhLrsse~----t~vfp-ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv--l--~a~ip~~s~~c~s~s~~~~p-- 297 (325)
T KOG0649|consen 229 LSLWHLRSSES----TCVFP-IPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV--L--QANIPVESTACYSASWQTSP-- 297 (325)
T ss_pred eeEEeccCCCc----eEEEe-cccceeEeeeecceEEEeccccceeeeeeccE--E--EEeccCCccceeeecccCCc--
Confidence 99999998733 22222 24566777888889999998899999987642 1 11122223334555554331
Q ss_pred CCeEEEEccCCCeEEEEE
Q 018591 318 GGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 318 ~~~~l~s~~~dg~i~iw~ 335 (353)
-+++-.++...++.|+.
T Consensus 298 -~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 -IKFISIAGFSNKLHILK 314 (325)
T ss_pred -eEEEEecccceeeeeee
Confidence 46777777888887763
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.2e-23 Score=179.57 Aligned_cols=267 Identities=13% Similarity=0.171 Sum_probs=198.4
Q ss_pred eCCCcEEEEeCC--Cce----eeEEeccCceeeEEEEEe--CC----EEEEecCCCcEEEEEcccC-ccceeEEeecccc
Q 018591 33 SQGKDIIVWQQP--DLR----MFTKFGHGDGSVKAVVTV--GN----KVFTAHQDSRIRVWKVSRS-SENVFRLVDTLPT 99 (353)
Q Consensus 33 ~~dg~v~vwd~~--~~~----~~~~~~~~~~~v~~~~~~--~~----~l~s~~~dg~i~~w~~~~~-~~~~~~~~~~~~~ 99 (353)
+.+.++-+|.+. +.+ .+..+.. ....+.++|. +. .|+.|..||.|-+||...- .......+.
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la---- 110 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA---- 110 (1049)
T ss_pred ccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh----
Confidence 445566666543 222 2333322 4567888886 33 5889999999999998763 111111111
Q ss_pred ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec--cccCcceEEE
Q 018591 100 TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI--KAHDDAVNGL 174 (353)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~i 174 (353)
....|.+.|..+.|++ +.|++|+.||.|.|||+.+.+.-... ......|.++
T Consensus 111 -----------------------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 111 -----------------------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred -----------------------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 1227999999999999 69999999999999999875443333 2246789999
Q ss_pred EEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC-ceeeEEEEcCCC-CeEEeecCC---CcEEEeecccc
Q 018591 175 VASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD-VSLNSVVVSDDG-KWVYGGGSD---GFVMGWEGNVE 246 (353)
Q Consensus 175 ~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~~l~~~~~d---g~i~i~d~~~~ 246 (353)
+|+.. .|++++.+|.+.|||++..+ ....+..+.. .-+..++|+|+. ..+++++.| -.|.+||++..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~-----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKK-----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCC-----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 99544 89999999999999999886 3333333332 334789999985 455555554 37999999875
Q ss_pred ccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591 247 IVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY 323 (353)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~ 323 (353)
. .....+.+|...+.+++|. ..+|++++.|+.|.+|+.++++ .+..+.....++..+.|+|.. -..++
T Consensus 243 s---sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---vl~~~p~~~nW~fdv~w~pr~---P~~~A 313 (1049)
T KOG0307|consen 243 S---SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---VLGELPAQGNWCFDVQWCPRN---PSVMA 313 (1049)
T ss_pred C---CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---EeeecCCCCcceeeeeecCCC---cchhh
Confidence 3 4556678999999999996 5799999999999999999988 677777778899999999983 34899
Q ss_pred EccCCCeEEEEEcCCCCC
Q 018591 324 SGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 324 s~~~dg~i~iw~~~~~~~ 341 (353)
.++-||.|-|+.+.....
T Consensus 314 ~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 314 AASFDGKISIYSLQGTDT 331 (1049)
T ss_pred hheeccceeeeeeecCCc
Confidence 999999999999987653
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.5e-20 Score=152.35 Aligned_cols=263 Identities=11% Similarity=0.099 Sum_probs=173.4
Q ss_pred CCCCceeeeeeCccCceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEE-ecCCC
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFT-AHQDS 76 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s-~~~dg 76 (353)
..+++++..+.+|.. +.+++|+ ++.+ ++++.++.|++||..+++....+..+.. +..+.++ ++.+++ ++.++
T Consensus 18 ~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 18 TATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDN 95 (300)
T ss_pred CCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCC
Confidence 457788888887654 6789996 6655 6777899999999999988877765443 3556666 666654 45689
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC-cEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK-TLKVW 153 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg-~v~iw 153 (353)
.+++||+.+.. .+..+ .+...+.++.++| ..+++++.++ .+.+|
T Consensus 96 ~l~~~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~ 142 (300)
T TIGR03866 96 LVTVIDIETRK-----VLAEI----------------------------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFI 142 (300)
T ss_pred eEEEEECCCCe-----EEeEe----------------------------eCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence 99999997654 22211 1223356788888 6777777664 56778
Q ss_pred EcCCceeeeeccccCcceEEEEEe-CC-eEE-EEcCCCcEEEEeCCCCCcccccceeeeeccC------CceeeEEEEcC
Q 018591 154 RVADLKCLESIKAHDDAVNGLVAS-KG-IVY-SASADGKIKAWGKELGKSHCHSLKGILEGHK------DVSLNSVVVSD 224 (353)
Q Consensus 154 d~~~~~~~~~~~~~~~~v~~i~~~-~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~ 224 (353)
|.++++....+.. .....++.|+ ++ .++ ++..++.|++||+++++ ....+..+. ......++|+|
T Consensus 143 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 143 DTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-----VIKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred eCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-----eeeeeeecccccccccCCccceEECC
Confidence 9988777655432 3345677883 33 554 44569999999999876 322222110 11125688999
Q ss_pred CCCeEEe-ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe-cCCCeEEEEecCCCcceEEeccccCC
Q 018591 225 DGKWVYG-GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG-SADKSIGIWKREAFGKLCRVGAITGH 302 (353)
Q Consensus 225 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~h 302 (353)
+++++++ .+.++.+.+||.++.+..... ..++.....++++++++|+++ +.+|.|.+||+++++ .+..+...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~---~~~~~~~~ 290 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYL---LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK---VIKSIKVG 290 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEE---EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEEEcc
Confidence 9998654 455678999999876322111 122333334455578888876 569999999999987 44444433
Q ss_pred CcCeEEEEeec
Q 018591 303 EGPVKCLQASP 313 (353)
Q Consensus 303 ~~~v~~~~~~~ 313 (353)
...+.++++|
T Consensus 291 -~~~~~~~~~~ 300 (300)
T TIGR03866 291 -RLPWGVVVRP 300 (300)
T ss_pred -cccceeEeCC
Confidence 4558888765
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.8e-21 Score=166.62 Aligned_cols=294 Identities=21% Similarity=0.299 Sum_probs=202.5
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccC---ceeeEEEEEe----CCEEEEecCCCcEEEEEcccCcc
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHG---DGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSSE 88 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~ 88 (353)
+-..+.|+ ...++++...-.|+|||.+.++.+..|..+ ...|+.+.+- ...+++|+.||.|+||+--....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34556665 667888877779999999999998888654 4578888874 56799999999999998544332
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
...+++.....-.... .+..+.-.-+.|.. ++|++++.-..|+|||......+..+..
T Consensus 1146 ~~~eLVTaw~~Ls~~~--------------------~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQL--------------------PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred CCceeEEeeccccccC--------------------ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc
Confidence 2233333221110000 01111113456665 7788888789999999988887777643
Q ss_pred -cCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-eeeEEEEcCCCC-eEEeecCCCcEEE
Q 018591 167 -HDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-SLNSVVVSDDGK-WVYGGGSDGFVMG 240 (353)
Q Consensus 167 -~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-~l~~~~~dg~i~i 240 (353)
....|+++.- .++.+++|..||.|++||.+..... ......+.|... .|..+.+.++|- .|++|+.+|.|++
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 3556777766 5569999999999999999877632 355666666654 247888888664 4999999999999
Q ss_pred eeccccccceeeeeeccccc--e-eEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccc----cCCCcCeEEEEe
Q 018591 241 WEGNVEIVRWKLACETKAHE--M-AVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAI----TGHEGPVKCLQA 311 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~--~-~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~~~~ 311 (353)
||++... ..... ....|. + ..+++.. +...+|+|+. +.|.||++...+ ...+... ....+.+.+++|
T Consensus 1284 ~DlR~~~-~e~~~-~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1284 LDLRMSS-KETFL-TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EecccCc-ccccc-eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeee
Confidence 9999851 11111 111111 2 3455544 5789999988 999999987532 2122111 112456899999
Q ss_pred ecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
+|. .-+||.|+.|.+|.||...++..
T Consensus 1360 HP~----~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1360 HPH----RLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred cch----hHhhhhccCCceEEEeecCCcCC
Confidence 999 88999999999999999877653
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=153.01 Aligned_cols=266 Identities=16% Similarity=0.154 Sum_probs=190.9
Q ss_pred EeCCCceeeEEeccCceeeEEEEEe---C-CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591 41 WQQPDLRMFTKFGHGDGSVKAVVTV---G-NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT 116 (353)
Q Consensus 41 wd~~~~~~~~~~~~~~~~v~~~~~~---~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (353)
.|+.+-.....+..+.+.|++++|. . +.+++|+.-|+|-+||+.+.+...
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------------------------- 224 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------------------------- 224 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------------------------
Confidence 3444555566677789999999998 3 688999999999999996443111
Q ss_pred cccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccc--cCcceEEEEE--eCCeEEEEcCCCc
Q 018591 117 RRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKA--HDDAVNGLVA--SKGIVYSASADGK 189 (353)
Q Consensus 117 ~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~--~~~~l~~~~~dg~ 189 (353)
....++..|..+|.++.|+| ..+++.+.||+|++-|++.......+.. ....+..+.+ .+..++.+..=|.
T Consensus 225 --d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~ 302 (498)
T KOG4328|consen 225 --DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGN 302 (498)
T ss_pred --CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccc
Confidence 12334458999999999999 8999999999999999987544333322 3455666666 3346666666679
Q ss_pred EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE
Q 018591 190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL 268 (353)
Q Consensus 190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 268 (353)
+.+||++++.. ....+..|... |.+++++|. ..++++++.|++.+|||++.-.....+......|...|.+..|
T Consensus 303 f~~iD~R~~~s----~~~~~~lh~kK-I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 303 FNVIDLRTDGS----EYENLRLHKKK-ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred eEEEEeecCCc----cchhhhhhhcc-cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 99999998872 34455556665 499999995 4678999999999999999864444333445567777766555
Q ss_pred --cCcEEEEecCCCeEEEEecCCC-cceEEeccccCCCc------CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 269 --VGEFLCSGSADKSIGIWKREAF-GKLCRVGAITGHEG------PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 269 --~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
++..|++-+.|..|+|||..-- ....++..+. |.. ......|.|+ ..++++|-.-..|-|+|-..+
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~----~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPD----YNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred cCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCC----ccEEEEeccCcceeEEcCCCC
Confidence 4556999999999999998411 1111222221 221 2344679999 889999999999999998888
Q ss_pred CCccc
Q 018591 340 SSTSD 344 (353)
Q Consensus 340 ~~~~~ 344 (353)
+.+.+
T Consensus 453 q~v~e 457 (498)
T KOG4328|consen 453 QMVCE 457 (498)
T ss_pred EEeee
Confidence 85554
No 162
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=175.07 Aligned_cols=282 Identities=18% Similarity=0.229 Sum_probs=210.9
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
+.+..|.||..+|+|+.|+ |.++++|+.|..|+||..+++.++....+|.+.|+.++.+ ...+++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 4456788999999999997 9999999999999999999999999999999999999988 56788999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE 162 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 162 (353)
+..+. +..++.+|++.|++++|+|.. +.+.||++++||.+ ..+..
T Consensus 261 l~~~~--------------------------------pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~ 305 (1113)
T KOG0644|consen 261 LPDGA--------------------------------PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRI 305 (1113)
T ss_pred cCCCc--------------------------------hHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccc
Confidence 98876 234445999999999999933 78899999999987 22221
Q ss_pred ec----cc-cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecC
Q 018591 163 SI----KA-HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGS 234 (353)
Q Consensus 163 ~~----~~-~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 234 (353)
.. .. ....+.++.+ ....+++++.|+.-..|.+.... .+.... .-+.++.+ ..+.+++-.
T Consensus 306 y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----------~~~~~l-if~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 306 YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA-----------WRSNLL-IFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh-----------hhccce-EEEeccccccccceeeee
Confidence 11 11 1344556666 33488999999998888765432 111111 11111111 245666777
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEE---cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL---VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~ 311 (353)
+-.+++|++.++ ...+...+|...+..+.+ +.+...+++.||...|||+-.+...+.. ..+| +.+..-+|
T Consensus 374 ~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y--~~gh-~kl~d~kF 446 (1113)
T KOG0644|consen 374 DHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY--FIGH-GKLVDGKF 446 (1113)
T ss_pred eeEeeeeecccc----hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee--eccc-ceeecccc
Confidence 888999999988 556666677766666655 4667788999999999999887643332 2454 45777889
Q ss_pred ecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
|++ |..++....-|.+.|.....++......
T Consensus 447 Sqd----gts~~lsd~hgql~i~g~gqs~s~k~ak 477 (1113)
T KOG0644|consen 447 SQD----GTSIALSDDHGQLYILGTGQSKSQKKAK 477 (1113)
T ss_pred CCC----CceEecCCCCCceEEeccCCCccccccc
Confidence 999 9999999888999999877766555443
No 163
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=159.64 Aligned_cols=298 Identities=17% Similarity=0.199 Sum_probs=219.9
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe----CCEEEEecCCCcE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV----GNKVFTAHQDSRI 78 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~s~~~dg~i 78 (353)
.++...|.+|.+.|..|.|+ |..|++||.|..|.+||+..+.....+ .+|...|..-.|- ...+++++.||.+
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34567889999999999997 999999999999999999988877666 5677777665553 5679999999999
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~ 155 (353)
++=.+...... .....+..|.++|..++..| ..|.+++.|+.+.-+|+
T Consensus 212 r~s~i~~t~~~-----------------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 212 RVSEILETGYV-----------------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred eeeeeccccce-----------------------------ecceecccccCccceeeecCCCCCcccccccccceeeeee
Confidence 98776543210 01122236889999999877 88999999999999999
Q ss_pred CCceeeeec---cccCc---ceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcc------cccceeeeeccCCceeeEE
Q 018591 156 ADLKCLESI---KAHDD---AVNGLVA---SKGIVYSASADGKIKAWGKELGKSH------CHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 156 ~~~~~~~~~---~~~~~---~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~~ 220 (353)
+...+...+ +.+.. ...+++. +.+.+++++.|..+++||.+.-... ...+...+......-|+++
T Consensus 263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 876654433 22333 4567777 3448999999999999998754421 1111122222333446999
Q ss_pred EEcCCCCeEEeecCCCcEEEeecccccc---------ceeeeeeccccce--eEEEEEE---cCcEEEEecCCCeEEEEe
Q 018591 221 VVSDDGKWVYGGGSDGFVMGWEGNVEIV---------RWKLACETKAHEM--AVLCVCL---VGEFLCSGSADKSIGIWK 286 (353)
Q Consensus 221 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~~--~v~~~~~---~~~~l~~~~~dg~i~iw~ 286 (353)
+|+.++.-+.++..|-.|+++.-..+.. ........++|.. .|..+.| ...|+++|+.-|.|.||+
T Consensus 343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 9998888888888888899995444321 0112222566653 3555554 357999999999999999
Q ss_pred cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
-.+++ .+..+.+...-|+||.-+|- -..||+.|-|..|+||--.+.
T Consensus 423 K~t~e---ii~~MegDr~VVNCLEpHP~----~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 423 KKTGE---IIRFMEGDRHVVNCLEPHPH----LPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cchhH---HHHHhhcccceEeccCCCCC----CchhhccCCccceeeecCCcc
Confidence 99887 66667777779999999999 789999999999999976443
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=160.48 Aligned_cols=266 Identities=15% Similarity=0.249 Sum_probs=199.7
Q ss_pred ceEEEEE--CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 18 SVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 18 ~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.|..++| +|..|+.+.. ..+.+||..+|..++++++|...|++++|+ |..+++|+.|..|.+|+..-.. .
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----I 87 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-----e
Confidence 7999999 4776666554 489999999999999999999999999998 9999999999999999865432 1
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV 171 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 171 (353)
+. ..|...|.|+.|+| ..|++++- ...-+|....... ...+ ....+
T Consensus 88 Lk-----------------------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k-ss~R~ 135 (1081)
T KOG1538|consen 88 LK-----------------------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK-SSSRI 135 (1081)
T ss_pred ee-----------------------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh-hheeE
Confidence 11 17999999999999 67777765 4577898654332 2222 25678
Q ss_pred EEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-----CeEEeecCCCcEEEeecc
Q 018591 172 NGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-----KWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 172 ~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~ 244 (353)
.+.+| +++ +++.|-.+|+|.+-+-...+ ...-...+....+|.+++|+|+. ..+++.....++..|.+.
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 88889 333 89999999999998654333 12222334455566999999963 467788888888888876
Q ss_pred ccccceeeeeecccccee--EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591 245 VEIVRWKLACETKAHEMA--VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL 322 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l 322 (353)
.. .+...+.-... ..+..++|.++..|+.|+.+.+|-.+. - .+.++.....+|+.++..|+ ++++
T Consensus 212 G~-----~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-v---rLGTvg~~D~WIWtV~~~PN----sQ~v 278 (1081)
T KOG1538|consen 212 GK-----QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-V---RLGTVGEQDSWIWTVQAKPN----SQYV 278 (1081)
T ss_pred ce-----eecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-e---EEeeccccceeEEEEEEccC----CceE
Confidence 54 22211212222 334445799999999999999998543 3 56666667889999999999 9999
Q ss_pred EEccCCCeEEEEEcCC
Q 018591 323 YSGSLDKSLRVWWVSK 338 (353)
Q Consensus 323 ~s~~~dg~i~iw~~~~ 338 (353)
+.|+.||+|..|++..
T Consensus 279 ~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 279 VVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEEccCeeehhhhHH
Confidence 9999999999998754
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=3.9e-21 Score=147.38 Aligned_cols=231 Identities=15% Similarity=0.189 Sum_probs=170.8
Q ss_pred EeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591 51 KFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH 127 (353)
Q Consensus 51 ~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (353)
.+.+|+++|..+.|+ .+.+++||.|.+|.+|++..+. +...+ ..+...+.+|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-----l~~~l--------------------tepvv~L~gH 130 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-----LTRDL--------------------TEPVVELYGH 130 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcc-----cccCc--------------------ccceEEEeec
Confidence 346899999999997 7789999999999999997765 11111 2346667799
Q ss_pred CCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591 128 ADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 128 ~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
...|.-+.|+| +.|++++.|..|.+||+.+++.+.++. |...|+++.| +++++++.+.|..||+||.++++
T Consensus 131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~--- 206 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT--- 206 (472)
T ss_pred ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---
Confidence 99999999999 899999999999999999999998887 9999999999 55599999999999999999998
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeec---CCCcEEEeeccccccceeeeeeccccceeEEEE-EEcCcE-EEEec
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV-CLVGEF-LCSGS 277 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-l~~~~ 277 (353)
+...-.+|.+..-..+.|-.++..+.+|. .+..+-+||...-... -...++....+...-+ .++..+ .++|-
T Consensus 207 --~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 207 --VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-IALQELDTSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred --EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-ceeEEeccCCceEEeeecCCCCEEEEEec
Confidence 66666777776557788888988555553 4678999998765322 2222333333332222 233444 45666
Q ss_pred CCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEeecC
Q 018591 278 ADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.|+.||.|.+.+... +..+.+++ ...+-..+.|.|.
T Consensus 284 GD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 284 GDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPK 320 (472)
T ss_pred CCcceEEEEecCCCceeEEecccc-cCCcccccccccc
Confidence 899999999987543 22233332 2345566777765
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.7e-22 Score=161.42 Aligned_cols=265 Identities=19% Similarity=0.249 Sum_probs=189.4
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--------ceeeEEeccCceeeEEEEEe--CCEEEE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--------LRMFTKFGHGDGSVKAVVTV--GNKVFT 71 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--------~~~~~~~~~~~~~v~~~~~~--~~~l~s 71 (353)
+++.+-.++..|.+.|+.++|. ...|++++.||.+.+|+++. .+++.+|.+|.++|.|++.. +..+++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence 3466667899999999999996 77999999999999999832 35788999999999999997 889999
Q ss_pred ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc
Q 018591 72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT 149 (353)
Q Consensus 72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~ 149 (353)
|+.||+|+.|++.... .....- ....-...+.||.+.|..+++++ +.|++++.||+
T Consensus 362 gg~Dg~I~~w~~p~n~-dp~ds~---------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT 419 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQ-DPDDSY---------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT 419 (577)
T ss_pred eccCceeeeeccCCCC-Cccccc---------------------CcchhccceeccccceeeeeecccccceeeecCCce
Confidence 9999999999886322 111000 00011234559999999999998 88999999999
Q ss_pred EEEEEcCCceeeeeccc--cCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeecc------CCceee
Q 018591 150 LKVWRVADLKCLESIKA--HDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGH------KDVSLN 218 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~ 218 (353)
+++|+.....+ .++.. ..+.-.++.+... ..++...-+.-.+++..... -...+... ....+.
T Consensus 420 vr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s-----~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 420 VRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS-----DLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred EEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh-----heeeccccCCCcccccCccc
Confidence 99999876655 33322 1233456666332 33333333333333333332 11111111 112246
Q ss_pred EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
.+..+|+..+.+++..|+.|+++|..++ .+......|...+++++. +|.+|++|+.|+.+++|.+.... ++
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~---~~ 566 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT---CV 566 (577)
T ss_pred eEEecCCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCCCceEEeecCCceeehhhccchh---ee
Confidence 7888999999999999999999999998 677777788888877766 48899999999999999987644 44
Q ss_pred ccccCCC
Q 018591 297 GAITGHE 303 (353)
Q Consensus 297 ~~~~~h~ 303 (353)
.....|.
T Consensus 567 ~es~~~r 573 (577)
T KOG0642|consen 567 LESTAHR 573 (577)
T ss_pred ecccccc
Confidence 4444443
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.5e-22 Score=151.48 Aligned_cols=245 Identities=16% Similarity=0.180 Sum_probs=181.6
Q ss_pred ccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEccc
Q 018591 15 HVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 15 h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~ 85 (353)
|...-..++|. ..++|.|+.-|.|+|.|+.++++...+.+|...|+.+.+. .+++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 66777788873 4589999999999999999999999999999999999997 67999999999999999988
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE- 162 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~- 162 (353)
.. ++..+.+ +.+|...|.++.|+. +++++++.|.++++|++...+...
T Consensus 168 ~~-----Cv~VfGG------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 168 DV-----CVAVFGG------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred Ce-----EEEEecc------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 76 3333222 128999999999999 999999999999999997321100
Q ss_pred ---------------------------eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc---------cccce
Q 018591 163 ---------------------------SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH---------CHSLK 206 (353)
Q Consensus 163 ---------------------------~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~ 206 (353)
+-..|...|.|+.|-.+++++-+-++.|..|....-+.. .....
T Consensus 219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~ 298 (385)
T KOG1034|consen 219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL 298 (385)
T ss_pred hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeee
Confidence 112477778888887789999999999999987322111 11122
Q ss_pred eeeeccCCce-eeEEEEcCCCCeEEeecCCCcEEEeeccccccce--eeeeeccccceeEEEEEEcCcEEEEecCCCeEE
Q 018591 207 GILEGHKDVS-LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW--KLACETKAHEMAVLCVCLVGEFLCSGSADKSIG 283 (353)
Q Consensus 207 ~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 283 (353)
..+.-....+ ....+|.|-++.|+.|...|.|.+||++...+.. ++.....+....-.+++-++.+|+....|++|.
T Consensus 299 ~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vw 378 (385)
T KOG1034|consen 299 GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVW 378 (385)
T ss_pred eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEE
Confidence 2222222222 1234566778999999999999999999875432 122222222333355566799999999999999
Q ss_pred EEecC
Q 018591 284 IWKRE 288 (353)
Q Consensus 284 iw~~~ 288 (353)
-||..
T Consensus 379 rwdrv 383 (385)
T KOG1034|consen 379 RWDRV 383 (385)
T ss_pred EEEee
Confidence 99853
No 168
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.89 E-value=7.7e-21 Score=165.04 Aligned_cols=299 Identities=16% Similarity=0.215 Sum_probs=199.4
Q ss_pred CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-------eeeEEeccCceeeEEEEE--eCCEEEE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-------RMFTKFGHGDGSVKAVVT--VGNKVFT 71 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~--~~~~l~s 71 (353)
++|..+++|..|...|..++.+ +.+++|||.||+|++||.... +...++......+.++.. .++.+|.
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 4688899999999999999995 589999999999999997532 222333333455665554 4899999
Q ss_pred ecCCCcEEEEEcccCccceeEEeec-cccccceeeeecccceeEeecccceeeeeecCCceEEE-EEeC---C-eEEEec
Q 018591 72 AHQDSRIRVWKVSRSSENVFRLVDT-LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL-TVYN---G-LIYSGS 145 (353)
Q Consensus 72 ~~~dg~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~---~-~l~~~~ 145 (353)
++.||.|++.+++............ .+.. ...+.+..+ ++.. . .++.+.
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-------------------------~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNL-------------------------KKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccc-------------------------cCCCceEEeecccccccceeEEEEE
Confidence 9999999999998742211111110 0000 112223222 3332 3 788888
Q ss_pred CCCcEEEEEcCCceeeeeccc--cCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591 146 WDKTLKVWRVADLKCLESIKA--HDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV 221 (353)
Q Consensus 146 ~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (353)
..+.|..||++......+++. ..+.|++++.++ +.++.|+..|.+.+||++-+. +...+.......+..+.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~-----~i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV-----PILSWEHPARAPIRHVW 1245 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc-----eeecccCcccCCcceEE
Confidence 999999999988776665543 367899999944 499999999999999999876 55555544445557777
Q ss_pred EcCCC---CeEEe-ec-CCCcEEEeeccccccceeeeee---------cc------ccc-eeEEEEEEc-CcEEEEecCC
Q 018591 222 VSDDG---KWVYG-GG-SDGFVMGWEGNVEIVRWKLACE---------TK------AHE-MAVLCVCLV-GEFLCSGSAD 279 (353)
Q Consensus 222 ~~~~~---~~l~~-~~-~dg~i~i~d~~~~~~~~~~~~~---------~~------~~~-~~v~~~~~~-~~~l~~~~~d 279 (353)
.+|-. ...++ ++ ..+.|.+|++.++.....+... .. .+. ..+.+.-.+ +.++.+|+.|
T Consensus 1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence 77632 34444 44 5789999999987543332222 00 011 111222222 6789999999
Q ss_pred CeEEEEecCCCcce-----------------------------------------E----Eecc--------ccCCCcCe
Q 018591 280 KSIGIWKREAFGKL-----------------------------------------C----RVGA--------ITGHEGPV 306 (353)
Q Consensus 280 g~i~iw~~~~~~~~-----------------------------------------~----~~~~--------~~~h~~~v 306 (353)
..|+.||....+.. . .... -..|..+|
T Consensus 1326 ~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~I 1405 (1431)
T KOG1240|consen 1326 MKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPI 1405 (1431)
T ss_pred cceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchh
Confidence 99999997643211 0 0000 12367789
Q ss_pred EEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 307 KCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
+++++.... ..+|++++.||.|+||.
T Consensus 1406 tdma~~~~~---q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1406 TDMATLKSE---QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhccC---ccEEEEecCCCeeeecC
Confidence 999888762 46999999999999994
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=1e-20 Score=158.21 Aligned_cols=268 Identities=14% Similarity=0.121 Sum_probs=194.5
Q ss_pred CCcEEEEeCCCc-eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 35 GKDIIVWQQPDL-RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 35 dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
++.+.+|++... .+...+. ....|.++.|+ +++++.|..+|.|.+||+..+.......+....
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~------------ 287 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE------------ 287 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc------------
Confidence 357999999876 3333443 36789999887 889999999999999999987743322222221
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCcee-eee-----cc------ccCcceEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKC-LES-----IK------AHDDAVNGL 174 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~-~~~-----~~------~~~~~v~~i 174 (353)
..|..+++.+.|.. .-+++++.||.|..|+++.... ... .. .....++++
T Consensus 288 --------------~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~ 353 (555)
T KOG1587|consen 288 --------------VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSL 353 (555)
T ss_pred --------------ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeE
Confidence 16999999999976 4599999999999998865322 111 11 123467888
Q ss_pred EE---eCCeEEEEcCCCcEEEEeCCCCCcc---cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc-ccc
Q 018591 175 VA---SKGIVYSASADGKIKAWGKELGKSH---CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN-VEI 247 (353)
Q Consensus 175 ~~---~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~ 247 (353)
.| .++.++.|+.+|.|.--+....+.. .......+..|.+.+ .++.++|-+..++..+.|.+++||... ..
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v-~~v~~nPF~~k~fls~gDW~vriWs~~~~~- 431 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV-YAVSRNPFYPKNFLSVGDWTVRIWSEDVIA- 431 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce-EeeecCCCccceeeeeccceeEeccccCCC-
Confidence 88 5569999999999987444333211 112233445555555 999999977666555559999999987 33
Q ss_pred cceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591 248 VRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS 324 (353)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s 324 (353)
.+...+..+...+++++|+ ...++++..||.+.+||+.... ..++.+...+....+.+.|++. |+.|+.
T Consensus 432 ---~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~----g~~lav 503 (555)
T KOG1587|consen 432 ---SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPN----GKLLAV 503 (555)
T ss_pred ---CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCC----CcEEEE
Confidence 4555666677779999997 5689999999999999997643 2244444445667788999998 999999
Q ss_pred ccCCCeEEEEEcCCC
Q 018591 325 GSLDKSLRVWWVSKQ 339 (353)
Q Consensus 325 ~~~dg~i~iw~~~~~ 339 (353)
|...|++++|++...
T Consensus 504 Gd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 504 GDANGTTHILKLSES 518 (555)
T ss_pred ecCCCcEEEEEcCch
Confidence 999999999999754
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.5e-22 Score=157.23 Aligned_cols=260 Identities=18% Similarity=0.244 Sum_probs=178.8
Q ss_pred EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591 51 KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA 128 (353)
Q Consensus 51 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
++..|...|.++.|. ...|++++.||++++|++........ ....+.-.|.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~------------------------~~~epi~tfraH~ 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAE------------------------KDVEPILTFRAHE 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccc------------------------cceeeeEEEeccc
Confidence 456677888888887 77899999999999999933110000 0112344566999
Q ss_pred CceEEEEEeC--CeEEEecCCCcEEEEEcCCc----------eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEe
Q 018591 129 DSISCLTVYN--GLIYSGSWDKTLKVWRVADL----------KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWG 194 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd 194 (353)
++|.|+++.+ ..+++|+.||+|+.|++... .....+.+|...|+.+++ .++.|++++.||+++.|+
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 9999999988 89999999999999965411 234567899999999999 445899999999999999
Q ss_pred CCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeec-ccc--ceeEEE--EEE
Q 018591 195 KELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAH--EMAVLC--VCL 268 (353)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~--~~~v~~--~~~ 268 (353)
.....+ +........+.+ .++.+-... ...++...-+.-.+++.........+.... .+. ...+.. -.+
T Consensus 425 ~~~~~~----~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 425 PTEESP----CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred cCCcCc----cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 887762 111111122333 556654433 223333333333344443332111110000 000 011122 233
Q ss_pred cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 269 VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.+.+.+++..|+.|+++|..+++ .+.....|...++++++.|+ |-+|++++.||.+++|++....+.....
T Consensus 500 ~~~~~~~~hed~~Ir~~dn~~~~---~l~s~~a~~~svtslai~~n----g~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 500 TADITFTAHEDRSIRFFDNKTGK---ILHSMVAHKDSVTSLAIDPN----GPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred CCCeeEecccCCceecccccccc---cchheeeccceecceeecCC----CceEEeecCCceeehhhccchheeeccc
Confidence 47789999999999999999988 78888899999999999999 9999999999999999998887776554
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=140.52 Aligned_cols=245 Identities=16% Similarity=0.179 Sum_probs=173.4
Q ss_pred eEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591 59 VKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV 136 (353)
Q Consensus 59 v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 136 (353)
..++.|+ |.+|++|+.||.|.+||+.+.. ..+++.+|..+|++++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--------------------------------iar~lsaH~~pi~sl~W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--------------------------------IARMLSAHVRPITSLCW 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--------------------------------hhhhhhccccceeEEEe
Confidence 6788888 9999999999999999998865 12334489999999999
Q ss_pred eC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeec
Q 018591 137 YN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEG 211 (353)
Q Consensus 137 ~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 211 (353)
++ ..|++++.|..|.+||+..+.++++++. ..+|+...|.| +.+++.-.+..-.+-++..+... .+...-.+
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d~d~ 150 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKDDDG 150 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCCCcc
Confidence 99 8999999999999999999999999864 78999999933 35555544555555555543210 01111111
Q ss_pred cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEE--EEcCcEEEEecCCCeEEEEecC
Q 018591 212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCV--CLVGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~~dg~i~iw~~~ 288 (353)
..+....+..|.+.|+++++|...|.+.++|..+. ++...++... ..|..+ +..|++|+.-+.|+.||.|+++
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecchh----eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 11222234568899999999999999999999987 4444444333 344444 4469999999999999999987
Q ss_pred CCc------ceEEeccccC--CCcCeEEEEeecCCCCCCeEEEEccCC-CeEEEEEcCCCCCccccc
Q 018591 289 AFG------KLCRVGAITG--HEGPVKCLQASPNAVGGGFLLYSGSLD-KSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 289 ~~~------~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~ 346 (353)
.-. .+.+.++++. ....=.+++|+.+ |.|++.++.- ..++||.-..|..+..+.
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d----geYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD----GEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCC----ccEEEeccccceeEEEEecCCcceeeeec
Confidence 311 1111222211 1223467889988 8888887753 579999999888776544
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=4.5e-20 Score=136.11 Aligned_cols=290 Identities=14% Similarity=0.149 Sum_probs=200.5
Q ss_pred CceeeeeeCccCceEEEEEC-----CcEEEEEeC----CCcEEEEeC--CCceeeEEe-ccCceeeEEEEEe-------C
Q 018591 6 HRSLAVLSGHVGSVSSLALC-----GEFILSASQ----GKDIIVWQQ--PDLRMFTKF-GHGDGSVKAVVTV-------G 66 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~----dg~v~vwd~--~~~~~~~~~-~~~~~~v~~~~~~-------~ 66 (353)
.+.+..+..| -+++++.|+ ..+||.|+. .+.|.|-.+ ++++.+..- -.|.-+++.+.|. .
T Consensus 35 ~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 35 RKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred cceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence 3445555544 368889986 558888875 456666554 345544322 3567788888886 2
Q ss_pred CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEE
Q 018591 67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYS 143 (353)
Q Consensus 67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~ 143 (353)
+.|++.+. .+|+|.+...+ ....+...+... .-..+..+++++.|+. +++.+
T Consensus 114 dlLATs~D--~LRlWri~~ee-~~~~~~~~L~~~----------------------kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 114 DLLATSSD--FLRLWRIGDEE-SRVELQSVLNNN----------------------KNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred chhhcccC--eEEEEeccCcC-CceehhhhhccC----------------------cccccCCcccccccccCCcceeEe
Confidence 34555543 79999997532 111111111110 0115778999999987 89999
Q ss_pred ecCCCcEEEEEcCCce---eeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-Cce
Q 018591 144 GSWDKTLKVWRVADLK---CLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-DVS 216 (353)
Q Consensus 144 ~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~ 216 (353)
++-|-+..+||++++. ...++-+|..+|..++|. -+.+++.+.||.+|+||++..+- ..-.++... ..+
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----STIIYE~p~~~~p 244 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----STIIYEDPSPSTP 244 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc----ceEEecCCCCCCc
Confidence 9999999999999863 355667899999999993 34999999999999999998761 222333333 444
Q ss_pred eeEEEEcCC-CCeEEeecC-CCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCc
Q 018591 217 LNSVVVSDD-GKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 217 v~~~~~~~~-~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
...++|+++ -+++++-.. ...|.+.|++... .....+.+|...|..++|. ...|++++.|..+.+||+...-
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 578888875 456666444 4579999998763 6778899999999999884 7799999999999999997643
Q ss_pred c---eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 292 K---LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 292 ~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
. ..++..+. ..+.|+.+.|+|.. ...++.+... ++.+
T Consensus 322 ~~~~~dPilay~-a~~EVNqi~Ws~~~---~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 322 RENGEDPILAYT-AGGEVNQIQWSSSQ---PDWIAICFGK-KLEI 361 (364)
T ss_pred ccCCCCchhhhh-ccceeeeeeecccC---CCEEEEEecC-eeeE
Confidence 2 11222222 46689999999763 5677776543 4433
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=9.8e-21 Score=139.45 Aligned_cols=276 Identities=21% Similarity=0.263 Sum_probs=191.4
Q ss_pred eeeeCccCceEEEEEC---CcEEEEEeCC-------CcEEEEeCCCc---------eeeEEec-cCceeeEEEEEe--CC
Q 018591 10 AVLSGHVGSVSSLALC---GEFILSASQG-------KDIIVWQQPDL---------RMFTKFG-HGDGSVKAVVTV--GN 67 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~---~~~l~s~~~d-------g~v~vwd~~~~---------~~~~~~~-~~~~~v~~~~~~--~~ 67 (353)
.+|..|.+.|+.++-+ .+.|+|+-.+ -.+-||.++.. +++..+. .+-+.|.|+.|. +.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 4567788999999875 5677776543 24789987642 3344443 345689999997 56
Q ss_pred EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEe
Q 018591 68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSG 144 (353)
Q Consensus 68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~ 144 (353)
.+++-. |..|.+|+++............... ++....++-+|+| ..-+..
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~--------------------------e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESA--------------------------EMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccc--------------------------cccceecccccCCCCccceEEE
Confidence 677665 7799999998876322222221111 4666778888988 334444
Q ss_pred cCCCcEEEEEcCCceeeeec-cccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591 145 SWDKTLKVWRVADLKCLESI-KAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 145 ~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
..|+++..||+++.++...+ .+|...|..+.|+++ .|++++.||.|++||.+..+ .+...+.+|...+ .++
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk----~pv~el~~HsHWv-W~V 264 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK----FPVQELPGHSHWV-WAV 264 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----ccccccCCCceEE-EEE
Confidence 56799999999998877666 468889999999776 89999999999999999876 4788899999887 999
Q ss_pred EEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc
Q 018591 221 VVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299 (353)
Q Consensus 221 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 299 (353)
.|+|. .+++++|+.|..|.+|....-................ ..|..=+.=-+.++ .+.++
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e--------------~~dseer~kpL~dg----~l~ty 326 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE--------------DEDSEERVKPLQDG----QLETY 326 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCc--------------chhhHHhccccccc----ccccc
Confidence 99995 5678899999999999765532111111110000000 00000000011221 45667
Q ss_pred cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 300 ~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
..|+..|++++|+..+ --++|+-+.||.+.|=++..
T Consensus 327 dehEDSVY~~aWSsad---PWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSAD---PWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccceEEEeeccCC---CeeEEEeccCceEEeecCCh
Confidence 7899999999999873 56889999999998877654
No 174
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.3e-20 Score=151.91 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=172.9
Q ss_pred eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591 48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
+-..+.+|++.|.+|..+ |.+|++|+.||+|++|.+.++. ++...
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-----cvr~~---------------------------- 438 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-----CVRTV---------------------------- 438 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-----EEEEE----------------------------
Confidence 334568999999999887 9999999999999999999987 44443
Q ss_pred ecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce-------------------------------------eeeec
Q 018591 126 EHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK-------------------------------------CLESI 164 (353)
Q Consensus 126 ~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~-------------------------------------~~~~~ 164 (353)
...+.|.|++|+| ..|+++.. ..+.+.+..-|. -+...
T Consensus 439 ~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~ 517 (733)
T KOG0650|consen 439 QFDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV 517 (733)
T ss_pred eecceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE
Confidence 2445788888887 23333333 334444432110 01112
Q ss_pred cccCcceEEEEE--eCCeEEEEcCC---CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 165 KAHDDAVNGLVA--SKGIVYSASAD---GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 165 ~~~~~~v~~i~~--~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
-.|...|..+.| .+++|++...+ ..|.|.++.... .+..+....+. +.++.|+|...+|++++.. .|+
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-----sQ~PF~kskG~-vq~v~FHPs~p~lfVaTq~-~vR 590 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-----SQSPFRKSKGL-VQRVKFHPSKPYLFVATQR-SVR 590 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-----ccCchhhcCCc-eeEEEecCCCceEEEEecc-ceE
Confidence 246778899999 45588877654 468889887665 33333333444 4999999999988888754 599
Q ss_pred EeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG 317 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (353)
+||+... .+...+......+..+ .+.|..|+.|+.|+.+..||+.-..+ +.+.+.-|...+++++|++.
T Consensus 591 iYdL~kq----elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk--Pyk~lr~H~~avr~Va~H~r--- 661 (733)
T KOG0650|consen 591 IYDLSKQ----ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK--PYKTLRLHEKAVRSVAFHKR--- 661 (733)
T ss_pred EEehhHH----HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc--hhHHhhhhhhhhhhhhhccc---
Confidence 9999886 4444444445555444 45689999999999999999986654 56778889999999999999
Q ss_pred CCeEEEEccCCCeEEEEE
Q 018591 318 GGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 318 ~~~~l~s~~~dg~i~iw~ 335 (353)
-.++++|+.||++.|+-
T Consensus 662 -yPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 662 -YPLFASGSDDGTVIVFH 678 (733)
T ss_pred -cceeeeecCCCcEEEEe
Confidence 78999999999999985
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.1e-20 Score=144.96 Aligned_cols=201 Identities=20% Similarity=0.303 Sum_probs=157.2
Q ss_pred eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-------eeeEEeccCceeeEEEEEe---CCEEEEecCCC
Q 018591 10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-------RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDS 76 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg 76 (353)
-.+.||+++|..++|+ .+.+||||.|.+|.||++..+ +.+..+.+|...|.-+.|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3567999999999995 789999999999999998754 4577889999999999998 78899999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
+|.+|++.+++. +-++ .|...|.++.|+. .++++.+.|..|++||
T Consensus 155 ~v~iWnv~tgea-----li~l----------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 155 TVSIWNVGTGEA-----LITL----------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVID 201 (472)
T ss_pred eEEEEeccCCce-----eeec----------------------------CCCCeEEEEEeccCCceeeeecccceeEEEc
Confidence 999999999872 1111 5999999999998 8999999999999999
Q ss_pred cCCceeeeeccccCcc--eEEEEEeCCeEEEEc----CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 155 VADLKCLESIKAHDDA--VNGLVASKGIVYSAS----ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~--v~~i~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
.++++.+..-.+|.+. ...+-..++.+++.+ .+..+-+||..+.+. +.....-..+.-|.---|.++.+.
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e----P~~~~elDtSnGvl~PFyD~dt~i 277 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE----PIALQELDTSNGVLLPFYDPDTSI 277 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC----cceeEEeccCCceEEeeecCCCCE
Confidence 9999999888788653 333433444455554 367899999887652 333333333333355567788777
Q ss_pred EEe-ecCCCcEEEeeccccc
Q 018591 229 VYG-GGSDGFVMGWEGNVEI 247 (353)
Q Consensus 229 l~~-~~~dg~i~i~d~~~~~ 247 (353)
++. |-.|+.|+.|.+....
T Consensus 278 vYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 278 VYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred EEEEecCCcceEEEEecCCC
Confidence 654 5579999999998764
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=8.7e-20 Score=136.59 Aligned_cols=262 Identities=16% Similarity=0.256 Sum_probs=188.1
Q ss_pred EEEEC--CcEEEEEeCCCcEEEEeCCCce------------eeEEec-cCceeeEEEEEe---------CCEEEEecCCC
Q 018591 21 SLALC--GEFILSASQGKDIIVWQQPDLR------------MFTKFG-HGDGSVKAVVTV---------GNKVFTAHQDS 76 (353)
Q Consensus 21 ~~~~~--~~~l~s~~~dg~v~vwd~~~~~------------~~~~~~-~~~~~v~~~~~~---------~~~l~s~~~dg 76 (353)
...|+ |.-|++-+.|..+++|++..-. ...++. .....|...+|- .+++++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 34564 8899999999999999975311 011111 123456666663 46788999999
Q ss_pred cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC---ceEEEEEeC--CeEEEecCCCcEE
Q 018591 77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD---SISCLTVYN--GLIYSGSWDKTLK 151 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~--~~l~~~~~dg~v~ 151 (353)
-|++||.-+++.. ..... ..|.. ...++.|+| ..|++| ....|+
T Consensus 134 PIh~wdaftG~lr-----aSy~~-------------------------ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 134 PIHLWDAFTGKLR-----ASYRA-------------------------YDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred ceeeeeccccccc-----cchhh-------------------------hhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 9999999888621 11100 02333 345799999 555555 568999
Q ss_pred EEEc-CCceeee--e-c----cccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591 152 VWRV-ADLKCLE--S-I----KAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 152 iwd~-~~~~~~~--~-~----~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
++|+ +.+..-. . + .+..+-+.+++++| ..++.++...++-||.-.... +...+.+|.+.+ +.+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-----pl~llggh~gGv-ThL 256 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-----PLQLLGGHGGGV-THL 256 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-----ceeeecccCCCe-eeE
Confidence 9999 4443211 1 1 23366788888844 389999999999999887777 788888999887 999
Q ss_pred EEcCCCCeEEeecC-CCcEEEeeccccccceeeeeeccccce-----eEEEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591 221 VVSDDGKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHEM-----AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC 294 (353)
Q Consensus 221 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 294 (353)
.|.++|+.|++|.. |..|..||++... .+...+..|.. ....+.+.+++|++|+.||.|++||++....
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-- 331 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-- 331 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--
Confidence 99999999999875 6789999998753 33334444433 2344555699999999999999999998443
Q ss_pred EeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
.+..+..|...++.++++|. -.++++++..
T Consensus 332 ~~sv~~~~sd~vNgvslnP~----mpilatssGq 361 (406)
T KOG2919|consen 332 EVSVTGNYSDTVNGVSLNPI----MPILATSSGQ 361 (406)
T ss_pred cccccccccccccceecCcc----cceeeeccCc
Confidence 46667789999999999998 7788888765
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=6.1e-18 Score=144.42 Aligned_cols=283 Identities=33% Similarity=0.538 Sum_probs=211.8
Q ss_pred eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-eeEEeccCce-eeEEEEE-e--CC-EEEEecC-CCcEEEE
Q 018591 11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-MFTKFGHGDG-SVKAVVT-V--GN-KVFTAHQ-DSRIRVW 81 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~-~v~~~~~-~--~~-~l~s~~~-dg~i~~w 81 (353)
.+..|...+.++.++ +..++.++.|+.+.+|+...+. ....+..+.. .+..+.. . +. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999996 7888889999999999998876 6666665332 5666655 3 44 4454444 9999999
Q ss_pred Eccc-CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC-CCcEEEEEcCC
Q 018591 82 KVSR-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW-DKTLKVWRVAD 157 (353)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~-dg~v~iwd~~~ 157 (353)
+... .. ....+..|...|..+.|++ ..+++++. |+.+++|+...
T Consensus 140 ~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 140 DLSTPGK--------------------------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred EecCCCe--------------------------------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 9986 22 1223347999999999999 56777775 99999999998
Q ss_pred ceeeeeccccCcceEEEEEe-CC--eEEEEcCCCcEEEEeCCCCCccccccee-eeeccCCceeeEEEEcCCCCeEEeec
Q 018591 158 LKCLESIKAHDDAVNGLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKG-ILEGHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
+..+..+..|...+.++++. .+ .+++++.|+.+++||...+. ... .+..|.... .. .|+|++..+++++
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 260 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-----LLRSTLSGHSDSV-VS-SFSPDGSLLASGS 260 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc-----EEeeecCCCCcce-eE-eECCCCCEEEEec
Confidence 88888888899999999994 33 44444899999999888554 444 566666542 22 8999998999999
Q ss_pred CCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591 234 SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~ 311 (353)
.|+.+++|+...... .......|...+.++.++ +..+++++.|+.+.+|+........... ...|...+..+.|
T Consensus 261 ~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 336 (466)
T COG2319 261 SDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF 336 (466)
T ss_pred CCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE
Confidence 999999999987643 111225566777776665 5778888889999999988766433332 3478778999999
Q ss_pred ecCCCCCCeEEEEc-cCCCeEEEEEcCCCC
Q 018591 312 SPNAVGGGFLLYSG-SLDKSLRVWWVSKQS 340 (353)
Q Consensus 312 ~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~ 340 (353)
+.. +..++.+ ..|+.+.+|++....
T Consensus 337 -~~~---~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 337 -SPD---GSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred -CCC---CCEEEEeecCCCcEEeeecCCCc
Confidence 531 2455555 788999999998876
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=2e-19 Score=132.74 Aligned_cols=254 Identities=13% Similarity=0.188 Sum_probs=182.6
Q ss_pred ceeeEEeccCceeeEEEEEe-----CCEEEEecC----CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591 46 LRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQ----DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT 116 (353)
Q Consensus 46 ~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (353)
++.+..+.. .-.+.++.|+ ..+|+.|+. .+.|.+-.++..... .+....
T Consensus 35 ~~eiy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e---~~~~a~------------------ 92 (364)
T KOG0290|consen 35 RKEIYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE---LVEDAN------------------ 92 (364)
T ss_pred cceEEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc---eeccCC------------------
Confidence 344555554 3567888887 456777763 356666655532211 111000
Q ss_pred cccceeeeeecCCceEEEEEeC-------CeEEEecCCCcEEEEEcCCcee----eeec-----cccCcceEEEEE---e
Q 018591 117 RRHHKRLWIEHADSISCLTVYN-------GLIYSGSWDKTLKVWRVADLKC----LESI-----KAHDDAVNGLVA---S 177 (353)
Q Consensus 117 ~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~~~dg~v~iwd~~~~~~----~~~~-----~~~~~~v~~i~~---~ 177 (353)
..|.-+++.+.|.| ++|++.+ ..+++|.+...+. ...+ ..+..++++..| .
T Consensus 93 --------fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 93 --------FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred --------CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC
Confidence 16888999999988 3455544 5799999863221 1111 235679999999 6
Q ss_pred CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeec
Q 018591 178 KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACET 256 (353)
Q Consensus 178 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 256 (353)
++++.+++-|-+..+||++.+. .......+-.|...+ ..++|...+ +.+++.+.||.+++||++.... ...+.+-
T Consensus 163 p~~igtSSiDTTCTiWdie~~~--~~~vkTQLIAHDKEV-~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~ 238 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGV--SGTVKTQLIAHDKEV-YDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYED 238 (364)
T ss_pred cceeEeecccCeEEEEEEeecc--ccceeeEEEecCcce-eEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecC
Confidence 7799999999999999999873 122456777888776 999999864 5789999999999999998632 2444444
Q ss_pred cccceeEEEEEEc---CcEEEEecC-CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591 257 KAHEMAVLCVCLV---GEFLCSGSA-DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 257 ~~~~~~v~~~~~~---~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~ 332 (353)
.....+...++|+ .+++|+-.. ...|.|.|++.... .+..+++|.+.|+.++|.|.. ...++|+++|..+.
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS---~~hictaGDD~qal 313 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHS---SSHICTAGDDCQAL 313 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCC---CceeeecCCcceEE
Confidence 4446677888886 678887655 45799999997655 678899999999999999983 67999999999999
Q ss_pred EEEcCCCC
Q 018591 333 VWWVSKQS 340 (353)
Q Consensus 333 iw~~~~~~ 340 (353)
+||+...-
T Consensus 314 iWDl~q~~ 321 (364)
T KOG0290|consen 314 IWDLQQMP 321 (364)
T ss_pred EEeccccc
Confidence 99998643
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-18 Score=125.20 Aligned_cols=233 Identities=18% Similarity=0.234 Sum_probs=166.7
Q ss_pred CceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCcee------eEE--eccC-----ceeeEEEEEe--CCEEE
Q 018591 6 HRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRM------FTK--FGHG-----DGSVKAVVTV--GNKVF 70 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~------~~~--~~~~-----~~~v~~~~~~--~~~l~ 70 (353)
..++-..++|.++|+.++|..++|++|+. |.|+-|....... +.. .+.| -..|+++..+ .+.++
T Consensus 52 k~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred CcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 34455668999999999999999999876 9999998654322 111 1112 2467787776 56677
Q ss_pred EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591 71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK 148 (353)
Q Consensus 71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg 148 (353)
.++.|+.++-||++++. -.+.+.+|++.|.++.--. ..+++|++||
T Consensus 131 ~AgGD~~~y~~dlE~G~--------------------------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGR--------------------------------IQREYRGHTDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred EecCCeEEEEEEecCCE--------------------------------EEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence 77789999999999987 2455669999999999854 8999999999
Q ss_pred cEEEEEcCCceeeeeccc---------c-CcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591 149 TLKVWRVADLKCLESIKA---------H-DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~---------~-~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
++++||.++++++..+.. | ...|.+++.+.+.++.|+. ..+.+|.++..+ +...+..... +.
T Consensus 179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse-----~t~vfpipa~--v~ 250 (325)
T KOG0649|consen 179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSE-----STCVFPIPAR--VH 250 (325)
T ss_pred cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCC-----ceEEEecccc--ee
Confidence 999999999998887642 2 3457788888888887764 679999999887 5555544332 36
Q ss_pred EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEe
Q 018591 219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWK 286 (353)
Q Consensus 219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~ 286 (353)
.+.|..+ .+++++..+.|.-|.+... +....+.......+.+++ -++|-.++..+.+.|+.
T Consensus 251 ~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 251 LVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred Eeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 6777644 6788888888999987653 222333333344444444 34566667777777764
No 180
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.1e-19 Score=140.59 Aligned_cols=245 Identities=15% Similarity=0.212 Sum_probs=184.8
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
.+.|+++.|. ...+++++.||++++|.++.........+. -...+|.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~------------------------------l~~fPi~~ 262 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH------------------------------LEKFPIQK 262 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee------------------------------eccCccce
Confidence 5689999998 678999999999999999876533222221 24457888
Q ss_pred EEEeC---CeEEEecCCCcEEEEEcCCceee--eeccccC-cceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591 134 LTVYN---GLIYSGSWDKTLKVWRVADLKCL--ESIKAHD-DAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSL 205 (353)
Q Consensus 134 ~~~~~---~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~-~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 205 (353)
..|.| ..+++++....++.||+.+.+.. ..+.++. ..+..... .+++++..+..|.|.+.-..+++ .
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-----l 337 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-----L 337 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-----h
Confidence 99988 48999999999999999886643 3333433 23344444 44599999999999999988887 5
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEE
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIW 285 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw 285 (353)
+..++.. ..+..++|+.+++.|++.+.+|.|.+||++........... .+-.+...|.+.++.+||+|+..|.|.||
T Consensus 338 i~s~Kie--G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 338 ITSFKIE--GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hheeeec--cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEe
Confidence 5555543 33699999999999999999999999999988433222221 22345567777889999999999999999
Q ss_pred ecCC---CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC--CCeEEEEEcCCCCCc
Q 018591 286 KREA---FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL--DKSLRVWWVSKQSST 342 (353)
Q Consensus 286 ~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~ 342 (353)
|.++ ...+.++..+..-...|+++.|+|+ .++||.+|. +..+|+-.+.+....
T Consensus 415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d----~qiLAiaS~~~knalrLVHvPS~TVF 472 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHD----AQILAIASRVKKNALRLVHVPSCTVF 472 (514)
T ss_pred ccchhhccCCCCchhhhhhhheeeeeeeeCcc----hhhhhhhhhccccceEEEeccceeee
Confidence 9654 2345577777777889999999999 999988875 567888777665443
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=5.5e-17 Score=123.85 Aligned_cols=231 Identities=11% Similarity=0.153 Sum_probs=169.4
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCc--EEEEEcccCcccee
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSR--IRVWKVSRSSENVF 91 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~--i~~w~~~~~~~~~~ 91 (353)
...+..+.|+ ...|..|+.|| -++++.+..............|..+-|+..+++..+.+.. +++.+.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~---- 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT---- 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc----
Confidence 3467777786 55777788776 6888877665544444445677788888888887766543 7888876554
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccc---cC
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA---HD 168 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~ 168 (353)
.+-.+ -...+|.++.++.++|+++=.+. |+|||+++.+.+.++.. +.
T Consensus 80 -~ICe~----------------------------~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~ 129 (391)
T KOG2110|consen 80 -TICEI----------------------------FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP 129 (391)
T ss_pred -eEEEE----------------------------ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCc
Confidence 11110 35568999999997777777654 99999999999888753 45
Q ss_pred cceEEEEEeCC--eEEE--EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc-EEEeec
Q 018591 169 DAVNGLVASKG--IVYS--ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF-VMGWEG 243 (353)
Q Consensus 169 ~~v~~i~~~~~--~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~ 243 (353)
..+.++.++.. +++. ....|.|.+||..+-+ ....+..|.+.. .+++|+++|.+||+++..|+ ||+|.+
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-----~v~~I~aH~~~l-Aalafs~~G~llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-----PVNTINAHKGPL-AALAFSPDGTLLATASEKGTVIRVFSV 203 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccce-----eeeEEEecCCce-eEEEECCCCCEEEEeccCceEEEEEEc
Confidence 55667776333 5553 2346899999999887 778888999887 99999999999999999995 789999
Q ss_pred cccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCC
Q 018591 244 NVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~ 289 (353)
..++...++..-.. ...+.+++ +++++|++.+..++|++|.++.
T Consensus 204 ~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCccEeeeeeCCce--eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99854444443333 23444444 4689999999999999999864
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=7.7e-21 Score=158.97 Aligned_cols=251 Identities=19% Similarity=0.284 Sum_probs=193.4
Q ss_pred eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
+.++.+.+|...|+|..|+ |.++++|+.|..++||..++.. ++...+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----~lAs~r-------------------------- 229 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----CLASCR-------------------------- 229 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----hhccCC--------------------------
Confidence 3445567899999999998 8999999999999999988776 444444
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
||.+.|+.++.+. -++++++.|..|++|.+..+.++..+.+|++.|++|+|+|.. +.+.||++++||.+-.. ..
T Consensus 230 -Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~-~~ 305 (1113)
T KOG0644|consen 230 -GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEP-RI 305 (1113)
T ss_pred -CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccc-cc
Confidence 8999999999987 688899999999999999999999999999999999997754 78899999999998221 00
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeE
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSI 282 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 282 (353)
...+.........+.++.|..++..+++++.|+.-..|........... ...++..+-...+.+++-.+-.+
T Consensus 306 -y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~-------lif~t~ssd~~~~~~~ar~~~~~ 377 (1113)
T KOG0644|consen 306 -YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL-------LIFVTRSSDLSSIVVTARNDHRL 377 (1113)
T ss_pred -cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc-------eEEEeccccccccceeeeeeeEe
Confidence 0111122223334577888888999999999999888876543111000 00111111113566777788889
Q ss_pred EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.+|++.++. .++.+.+|...+..+.++|-+ .....+++.||+..|||+..+..++...
T Consensus 378 ~vwnl~~g~---l~H~l~ghsd~~yvLd~Hpfn---~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 378 CVWNLYTGQ---LLHNLMGHSDEVYVLDVHPFN---PRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred eeeecccch---hhhhhcccccceeeeeecCCC---cHhhhhccCCCceEeeecccCCcceeee
Confidence 999999987 677888999999999999973 5678899999999999999887776443
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=2.7e-18 Score=128.74 Aligned_cols=254 Identities=19% Similarity=0.211 Sum_probs=174.4
Q ss_pred eeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591 58 SVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT 135 (353)
Q Consensus 58 ~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 135 (353)
......|+ |..|++-+.|..+++|++....-..-. -..... .....+-......|...+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~------------------~~~~~~r~~eg~tvydy~ 111 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNF------------------SKHLSYRYQEGETVYDYC 111 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCcccc------------------ccceeEEeccCCEEEEEE
Confidence 34456676 889999999999999998643200000 000000 000001112334555666
Q ss_pred EeC---------CeEEEecCCCcEEEEEcCCceeeeeccc--cCc---ceEEEEE-eCCeEEEEcCCCcEEEEeC-CCCC
Q 018591 136 VYN---------GLIYSGSWDKTLKVWRVADLKCLESIKA--HDD---AVNGLVA-SKGIVYSASADGKIKAWGK-ELGK 199 (353)
Q Consensus 136 ~~~---------~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~i~~-~~~~l~~~~~dg~i~iwd~-~~~~ 199 (353)
|.+ .++++.+.+.-|++||.-+++....+.+ |.. .-.+++| +++.-+.++....|++||+ +.++
T Consensus 112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 542 7899999999999999999988877754 333 3457888 5555566677899999999 5544
Q ss_pred cccccceeee--eccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEE
Q 018591 200 SHCHSLKGIL--EGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLC 274 (353)
Q Consensus 200 ~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 274 (353)
. ........ +.....++.+++|+|- .+.++.|+....+-||.-... .+...+.+|.+.|+.+.+ +|+.|+
T Consensus 192 ~-c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lf 266 (406)
T KOG2919|consen 192 D-CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLF 266 (406)
T ss_pred C-CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeec
Confidence 1 11111111 2233456699999995 458999999988888887766 566667799999988877 588999
Q ss_pred EecC-CCeEEEEecCCCcceEEeccccCCCc-CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 275 SGSA-DKSIGIWKREAFGKLCRVGAITGHEG-PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 275 ~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+|.. |-.|..||++..+. .+..+..|.+ .=..|.|.-+.. +++|++|+.||.|++||+++.
T Consensus 267 sGaRk~dkIl~WDiR~~~~--pv~~L~rhv~~TNQRI~FDld~~--~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRD--PVYALERHVGDTNQRILFDLDPK--GEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred ccccCCCeEEEEeehhccc--hhhhhhhhccCccceEEEecCCC--CceeeccCCCccEEEEecCCC
Confidence 8884 78899999997654 6777888876 445555654322 999999999999999999983
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.3e-18 Score=145.79 Aligned_cols=255 Identities=16% Similarity=0.134 Sum_probs=173.0
Q ss_pred ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCcee--eEE----eccCceeeEEEEEe----CCEEEEec
Q 018591 7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRM--FTK----FGHGDGSVKAVVTV----GNKVFTAH 73 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~--~~~----~~~~~~~v~~~~~~----~~~l~s~~ 73 (353)
++-..+.. ..+|+|++|+ ..+++.|..+|.|.+||+..+.. ... ...|..++.++.|. +.-+++++
T Consensus 234 ~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 234 TPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred CceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 34444443 5689999995 88999999999999999987655 222 24678899999996 45699999
Q ss_pred CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591 74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL 150 (353)
Q Consensus 74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v 150 (353)
.||.|..|+++.-....-......... ...-..-...+++++|.+ ..+++|+.+|.|
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~~--------------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKKH--------------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred cCCcEeeeeccccccchhhcccccccc--------------------cccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 999999998765432111110000000 000002334678888877 899999999999
Q ss_pred EEEEcCC---c-----eeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCC-CCCcccccceeeeeccCCceee
Q 018591 151 KVWRVAD---L-----KCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKE-LGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 151 ~iwd~~~---~-----~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
.-=+-.. . +....+..|.++|+++.++| ..+++++ |.++++|... ... ++..+..+...+ +
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-----Pl~~~~~~~~~v-~ 445 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-----PLLSLDSSPDYV-T 445 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-----cchhhhhcccee-e
Confidence 8733221 1 22334566889999999844 3555555 9999999887 443 555555555554 9
Q ss_pred EEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591 219 SVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 219 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~ 289 (353)
+++|||.. ..|+++..||.+.+||+.......................+.+|+.|++|...|++.+|++..
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999964 578888999999999998764333222222211222233334589999999999999999864
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.6e-19 Score=147.13 Aligned_cols=231 Identities=15% Similarity=0.149 Sum_probs=165.9
Q ss_pred ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCC
Q 018591 72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDK 148 (353)
Q Consensus 72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg 148 (353)
.+..|.|-|++++......-..+..+ -....|+.+.|+| ..|++++.||
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~WdPFD~~rLAVa~ddg 650 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWDPFDDERLAVATDDG 650 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccCCCChHHeeecccCc
Confidence 45568999999987652221122111 2456799999999 8999999999
Q ss_pred cEEEEEcCC-------ceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591 149 TLKVWRVAD-------LKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 149 ~v~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
.|++|.+.. ..+...+..|...|+++.|++ +.|+++++|-+|++||+++.. ....+.+|.+.+ .
T Consensus 651 ~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtdqI-f 724 (1012)
T KOG1445|consen 651 QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTDQI-F 724 (1012)
T ss_pred eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcCce-e
Confidence 999999864 345567788999999999944 699999999999999999998 778899999987 9
Q ss_pred EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC----CeEEEEecCCCcc-e
Q 018591 219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD----KSIGIWKREAFGK-L 293 (353)
Q Consensus 219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~-~ 293 (353)
.++|+|+|+.+++.+.||++++|+.+........-....+..+.-.-++.+|+++++.+.| ..|.+||.++... +
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc
Confidence 9999999999999999999999999886433222222233445556667789988887765 4688888765331 0
Q ss_pred EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.....+.-... +.--.+.+| .+-++++|-.|..|.+|++-...
T Consensus 805 l~t~~lDvaps-~LvP~YD~D---s~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 805 LYTQVLDVAPS-PLVPHYDYD---SNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ceeeeecccCc-cccccccCC---CceEEEecCCCceEEEEEecCCC
Confidence 01111110000 111123333 26788999999999999986554
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=5.2e-17 Score=132.83 Aligned_cols=272 Identities=10% Similarity=0.132 Sum_probs=164.1
Q ss_pred EEEEeCCCcEEEEeCCC-ce--eeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCccceeEEeeccccccc
Q 018591 29 ILSASQGKDIIVWQQPD-LR--MFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 29 l~s~~~dg~v~vwd~~~-~~--~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
+++...|+.|++||+.+ ++ .+..+.. .+....+.++ +++|+++ ..++.|.+|+++... ........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~----- 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAES----- 76 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeee-----
Confidence 34447789999999964 33 4455543 3445566776 7777665 457899999997321 11111111
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC-c---eeeeeccccCcceEEEE
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD-L---KCLESIKAHDDAVNGLV 175 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~-~---~~~~~~~~~~~~v~~i~ 175 (353)
........+.++| +.+++++ .++.|.+|++++ + +.+..+.+ .....+++
T Consensus 77 -----------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~ 132 (330)
T PRK11028 77 -----------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSAN 132 (330)
T ss_pred -----------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeE
Confidence 1122345788888 5566554 488999999964 2 22233322 23456677
Q ss_pred EeCC--eE-EEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccccccce
Q 018591 176 ASKG--IV-YSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRW 250 (353)
Q Consensus 176 ~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~ 250 (353)
++++ ++ ++...++.|.+||+.+.............. ....+ ..++|+|+++++++... ++.|.+|++.......
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p-~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP-RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC-ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 7433 55 455567999999997633110000011111 12233 78999999999988876 8999999997421112
Q ss_pred eeeeecccc------cee--EEEEEEcCcEEEEec-CCCeEEEEecCCCc-ceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591 251 KLACETKAH------EMA--VLCVCLVGEFLCSGS-ADKSIGIWKREAFG-KLCRVGAITGHEGPVKCLQASPNAVGGGF 320 (353)
Q Consensus 251 ~~~~~~~~~------~~~--v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 320 (353)
+........ ... -..+++++++++++. .++.|.+|+++... ....+..... ......+.++|+ |+
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d----g~ 286 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS----GK 286 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC----CC
Confidence 222222111 111 245667899888875 47899999996543 2222222221 124567899999 88
Q ss_pred EEEEccC-CCeEEEEEcCC
Q 018591 321 LLYSGSL-DKSLRVWWVSK 338 (353)
Q Consensus 321 ~l~s~~~-dg~i~iw~~~~ 338 (353)
+|+++.. +++|.+|++..
T Consensus 287 ~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 287 YLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEEccCCcEEEEEEcC
Confidence 8887765 89999998853
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=5.2e-16 Score=132.49 Aligned_cols=283 Identities=28% Similarity=0.477 Sum_probs=204.9
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeC-CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CC-EEEEecCCCcEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQ-GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIR 79 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~ 79 (353)
......+.+|...|.+++|+ ++.+++++. |+.+++|+...+..+..+..|...|.++.+. +. .+++++.|+.++
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 46778899999999999996 668888885 9999999999989999999999999999998 44 455559999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
+||...+. .... .+.+|.... ...|++ ..+++++.|+.+++|+...
T Consensus 225 ~wd~~~~~-----~~~~--------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 225 LWDLSTGK-----LLRS--------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred EEECCCCc-----EEee--------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence 99776333 1110 122566554 336777 5888999999999999986
Q ss_pred cee-eeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeee--ccCCceeeEEEEcCCCCeEEee
Q 018591 158 LKC-LESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILE--GHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 158 ~~~-~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
... ...+..|...+.++.+.+ ..+++++.|+.+.+||..... ...... .|.. .+..+.+.+++..++.+
T Consensus 273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-----LLSSLTLKGHEG-PVSSLSFSPDGSLLVSG 346 (466)
T ss_pred CCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-----eEEEeeecccCC-ceEEEEECCCCCEEEEe
Confidence 554 444467889999999954 577778888889999888776 333332 5555 34888884332455555
Q ss_pred -cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEE-EecCCCeEEEEecCCCcceEEeccccCCCcCeEEE
Q 018591 233 -GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLC-SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL 309 (353)
Q Consensus 233 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~ 309 (353)
..|+.+.+|+..... .......... +..+.+. ...+. .+..++.+.+|+...... ......+...+...
T Consensus 347 ~~~d~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 418 (466)
T COG2319 347 GSDDGTIRLWDLRTGK----PLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL---LRNLDGHTSRVTSL 418 (466)
T ss_pred ecCCCcEEeeecCCCc----eeEEecCCce-EEEEEECCCCCEEEEecCCCceEEEecccCee---eeeccCCCCcEEEE
Confidence 678999999998874 1111111111 3333332 23333 378899999999987663 32233222789999
Q ss_pred EeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 310 QASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 310 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.++++ +..+++++.++.+++|+...
T Consensus 419 ~~~~~----~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 419 DFSPD----GKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECCC----CcEEEEecCCCcEEEEeccC
Confidence 99999 88999999999999999887
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.9e-19 Score=132.36 Aligned_cols=200 Identities=15% Similarity=0.135 Sum_probs=155.8
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE----eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA----SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
..++++-..|.|++||..+++.+..+++++..++.+.| .+..+.+++.||+|++||++.... .....+..+.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---SARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---hhheeccCCCC
Confidence 56888999999999999999999999999999999998 344899999999999999998762 23334455554
Q ss_pred ceeeEEEEcCCCCeEEeecC----CCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEec
Q 018591 215 VSLNSVVVSDDGKWVYGGGS----DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~ 287 (353)
.+..+++..-+++.+++|.. +-.+.+||++..+.. +..-...|...|+++.|. +++|++|+.||.|.+||+
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 45567777667788888753 668999999987532 233446688888888774 789999999999999999
Q ss_pred CCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 288 EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 288 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
........+...-.|...|..+.|..+ .-+.+.+-+..++..+|+++.+.+....+
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~---~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSK---KYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecC---CcceEEEEEccCceeEEEccCCChhhccc
Confidence 865443344444557788999999987 13568888999999999999988654433
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.7e-17 Score=136.07 Aligned_cols=289 Identities=15% Similarity=0.194 Sum_probs=199.8
Q ss_pred CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC----ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591 14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPD----LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~ 85 (353)
.|+..++|.+++ ++++|+|..||.|.+|.--. ......+.=|...|.+++|+ |.+|++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 477778999997 89999999999999997322 23345566788899999998 99999999999999999998
Q ss_pred CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee
Q 018591 86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES 163 (353)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~ 163 (353)
++.. .+..-.++|..+.++| ++.+....|+.|.+....+.+....
T Consensus 283 ~~kq---------------------------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 283 GKKQ---------------------------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred CCcc---------------------------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 8621 1114567899999999 7788888899999998866555444
Q ss_pred cccc-----------CcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-----eeeEEEEcCC
Q 018591 164 IKAH-----------DDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-----SLNSVVVSDD 225 (353)
Q Consensus 164 ~~~~-----------~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~ 225 (353)
+.+- .+-.+.++++ .+.++-.+..|.|.+||+-+..............+.+. .+++++.+..
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~ 409 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF 409 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence 4321 2334556663 45888889999999999987763211111111111111 2467777778
Q ss_pred CCeEEeec--------CC--CcEEEeeccccccceeeeeec-cccceeEE--EEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591 226 GKWVYGGG--------SD--GFVMGWEGNVEIVRWKLACET-KAHEMAVL--CVCLV--GEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 226 ~~~l~~~~--------~d--g~i~i~d~~~~~~~~~~~~~~-~~~~~~v~--~~~~~--~~~l~~~~~dg~i~iw~~~~~ 290 (353)
|.++++.- .| -.+++|-.......+.+.... ..|..... ++... ....++++.||.+++|-+...
T Consensus 410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 88888763 23 357788777665555544433 23444333 33322 338899999999999998443
Q ss_pred cc-------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 291 GK-------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 291 ~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+. ..+...-.-|..++++++|+.| |..|+. +.|++|.+||..+..
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d----Gslla~-s~~~~Itiwd~~~~~ 541 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQD----GSLLAV-SFDDTITIWDYDTKN 541 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCC----CcEEEE-ecCCEEEEecCCChh
Confidence 32 1222222237889999999999 865554 567799999998853
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=4e-17 Score=122.33 Aligned_cols=207 Identities=14% Similarity=0.123 Sum_probs=155.8
Q ss_pred eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591 10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~ 82 (353)
..+.--..+|+|.+|+ ...+|.+-....|.||..... +...++..|...|+.+.|. .+.|++++.|..-++|.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 4444456899999996 778999999899999987654 4678889999999999998 78999999999999999
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
...+.. -.+..++..+....+++.|+| +.+++|+....|.+|-++...-
T Consensus 84 ~~~~~~-----------------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd 134 (361)
T KOG1523|consen 84 QPSGGT-----------------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND 134 (361)
T ss_pred cCCCCe-----------------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence 843331 112233447889999999999 9999999999999998765332
Q ss_pred ----eeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCC-----CCCc-------cc-ccceeeeeccCCceeeEEE
Q 018591 161 ----LESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKE-----LGKS-------HC-HSLKGILEGHKDVSLNSVV 221 (353)
Q Consensus 161 ----~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~-----~~~~-------~~-~~~~~~~~~~~~~~v~~~~ 221 (353)
...-+.+...|+++.|.++ ++++|+.|+..|+|..- .... .+ ..+...+....+. +..+.
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-vh~v~ 213 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-VHGVL 213 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-eeeeE
Confidence 1122456788999999444 88899999999999632 1110 00 1112222223333 59999
Q ss_pred EcCCCCeEEeecCCCcEEEeecccc
Q 018591 222 VSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 222 ~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
|+|+|..|+-.+.|+.+.+-|....
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999999999999999988765
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.4e-16 Score=133.11 Aligned_cols=236 Identities=16% Similarity=0.214 Sum_probs=149.5
Q ss_pred CCCCCceeeeeeCccCceEEEEEC---C--cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-----CCEEE-
Q 018591 2 PCKSHRSLAVLSGHVGSVSSLALC---G--EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVF- 70 (353)
Q Consensus 2 ~~~~~~~~~~l~~h~~~v~~~~~~---~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~- 70 (353)
+..+++++..|++|+.+++++.+. . .++++++.||.|++||...+++++++..+- ++.++.+. ....+
T Consensus 43 S~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~ 121 (792)
T KOG1963|consen 43 STATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVY 121 (792)
T ss_pred ecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeE
Confidence 456888999999999999999995 2 688899999999999999999999886642 33333331 11111
Q ss_pred EecCC------------CcEEEEEcccCccceeEEeecc--------ccccceeeeecccceeEeeccc------ceeee
Q 018591 71 TAHQD------------SRIRVWKVSRSSENVFRLVDTL--------PTTKDYLGKFMKQSNYVQTRRH------HKRLW 124 (353)
Q Consensus 71 s~~~d------------g~i~~w~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 124 (353)
....| ++++-..+.+............ .....+................ ....-
T Consensus 122 ~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~ 201 (792)
T KOG1963|consen 122 VSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT 201 (792)
T ss_pred eecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh
Confidence 11111 1122222211110000000000 0000111111111111111111 00111
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC----ceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCC
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD----LKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKE 196 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~ 196 (353)
..|...+++.+++| +++++|..||.|.+|.--. ......+.-|..+|++++| .+.+|++|+.++.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 25777789999999 8999999999999996322 1233455678899999999 34499999999999999999
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
+++ +.+-..-+.+|..+.++||+.+.+....|..|.+....+
T Consensus 282 T~~-------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 282 TGK-------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred CCC-------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 886 233333445569999999999999999999999987644
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=3.6e-18 Score=126.11 Aligned_cols=207 Identities=18% Similarity=0.219 Sum_probs=148.8
Q ss_pred eeeecCCceEEEEEeC---CeEEEecCC-------CcEEEEEcCCc---------eeeeecc-ccCcceEEEEEeCC--e
Q 018591 123 LWIEHADSISCLTVYN---GLIYSGSWD-------KTLKVWRVADL---------KCLESIK-AHDDAVNGLVASKG--I 180 (353)
Q Consensus 123 ~~~~~~~~i~~~~~~~---~~l~~~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~i~~~~~--~ 180 (353)
++..|.+.|..++-+| ..|+++..+ -.+.+|.+... +++..+. .+-+.|.|+.|.|+ .
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 3447889999999988 566666542 24679988542 2333443 45568999999444 4
Q ss_pred EEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591 181 VYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 257 (353)
+++ -.|..|.+|++.........+..... .+... .++-+|+| +++.+++. .|+++..||+++... ......
T Consensus 138 las-m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~-ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~---~~sI~d 211 (370)
T KOG1007|consen 138 LAS-MDDNNIVLWSLDESSKIVAEVLSSESAEMRHS-FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK---NNSIED 211 (370)
T ss_pred eEE-eccCceEEEEcccCcchheeecccccccccce-ecccccCCCCccceEEEe-CCCcEEEEEccchhh---hcchhh
Confidence 444 44899999999887632111111111 12222 37788998 67777665 588999999998742 233345
Q ss_pred ccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 258 AHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 258 ~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
.|...+..+.++ ..+|++|+.||.|+|||.+..+. ++.++.+|...|.++.|.|.. .+++++||.|..|.+|
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~h---dqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEH---DQLILSGGSDSAVNLS 286 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCcc---ceEEEecCCCceeEEE
Confidence 677788888887 34899999999999999987654 788899999999999999973 6899999999999999
Q ss_pred EcCCCC
Q 018591 335 WVSKQS 340 (353)
Q Consensus 335 ~~~~~~ 340 (353)
....-.
T Consensus 287 ca~svS 292 (370)
T KOG1007|consen 287 CASSVS 292 (370)
T ss_pred eccccc
Confidence 866543
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=6.1e-18 Score=135.21 Aligned_cols=255 Identities=17% Similarity=0.144 Sum_probs=179.9
Q ss_pred CccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEE------e----CCEEEEecCCCcEEEEE
Q 018591 14 GHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT------V----GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 14 ~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~------~----~~~l~s~~~dg~i~~w~ 82 (353)
-|...|.|+.|. ..-+..++.|..+.+|.-.+.+....+.-....+....+ . .+.++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 477788888886 556666667777777764444333333222222221111 1 35688899999999877
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
-...-+ +....|.+.+.+-.|++ .-|++++.||.|++|. ++|-.
T Consensus 92 k~~rVE---------------------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML 137 (737)
T KOG1524|consen 92 KSARVE---------------------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML 137 (737)
T ss_pred ccchhh---------------------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence 543321 11127999999999999 7899999999999998 56766
Q ss_pred eeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 161 LESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
..++.....+|.|++|.++ .+++.+ +.+.+=.+.... ..-.++.|.+-+ .++.|++..+.+++|+.|-.
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~-----k~i~WkAHDGii-L~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS-----KIIRWRAHDGLV-LSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc-----ceeEEeccCcEE-EEeecCccccceeecCCcee
Confidence 6666667889999999332 444443 566666665544 456778888765 99999999999999999999
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEEEcCcE-EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
.++||-... .......|..++++++|+... ++.++. +++|+ -+...+.|..++||+|
T Consensus 210 fKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~--------------~~p~~GSifnlsWS~D-- 267 (737)
T KOG1524|consen 210 FKIWDAQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARF--------------SSPRVGSIFNLSWSAD-- 267 (737)
T ss_pred EEeecccCc-----ccccCChhccceeeeeeccccceeeeee-eeeee--------------cCCCccceEEEEEcCC--
Confidence 999998764 445556788899999998544 343433 34441 1234678999999999
Q ss_pred CCCeEEEEccCCCeEEEE
Q 018591 317 GGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 317 ~~~~~l~s~~~dg~i~iw 334 (353)
|..++.|+..|.+.+=
T Consensus 268 --GTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 268 --GTQATCGTSTGQLIVA 283 (737)
T ss_pred --CceeeccccCceEEEe
Confidence 9999999999987653
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=3.3e-18 Score=140.40 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=177.3
Q ss_pred CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591 2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR 77 (353)
Q Consensus 2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 77 (353)
....|.++++|+||.+.|+|++|+ |+++|+|+.|..|.+|+.+- +-+..+ .|...|.|+.|+ ...|++++-. .
T Consensus 39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-d 115 (1081)
T KOG1538|consen 39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLASCSLS-D 115 (1081)
T ss_pred eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhhcchh-h
Confidence 346788999999999999999995 99999999999999998532 222222 478899999999 7788888874 6
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
.-+|..+....... .....+.+.+|.. .+++.|-.||+|.+-+-
T Consensus 116 FglWS~~qK~V~K~----------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 116 FGLWSPEQKSVSKH----------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred ccccChhhhhHHhh----------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 78999876542111 2345788889988 89999999999999874
Q ss_pred CCceeeeec---cccCcceEEEEEeCC-------eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC
Q 018591 156 ADLKCLESI---KAHDDAVNGLVASKG-------IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD 225 (353)
Q Consensus 156 ~~~~~~~~~---~~~~~~v~~i~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (353)
+++....+ .+...+|.+++|+++ .+++.....++.++.+.... +..-+.-.-.+ .++.+.++
T Consensus 162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~------Igk~r~L~FdP-~CisYf~N 233 (1081)
T KOG1538|consen 162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ------IGKDRALNFDP-CCISYFTN 233 (1081)
T ss_pred -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee------ecccccCCCCc-hhheeccC
Confidence 44443333 346789999999332 78888888999999876543 21112222233 78999999
Q ss_pred CCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEecC
Q 018591 226 GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 226 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~ 288 (353)
|.++..|+.|+.+++|..+. ....+......++ ..+.|++++++.|+.||+|.-|++-
T Consensus 234 GEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CcEEEEccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999999999997554 2333333334444 4556789999999999999999864
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.3e-17 Score=129.29 Aligned_cols=200 Identities=24% Similarity=0.234 Sum_probs=148.6
Q ss_pred EEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 132 SCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 132 ~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
.+++|+. ..+++|+.||.+|+|+..+...+.....|...|.++.|++ + .|++.+.| ..++|+.+++. ...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-----~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-----ALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-----hhh
Confidence 5677776 8999999999999999888888888889999999999944 3 88888888 99999999985 333
Q ss_pred eee-ccCCceeeEEEEcCCC-----CeEEeecCCCcEEEeeccccccc--eeeeeecccc-ceeEEEEEEcCcEEEEecC
Q 018591 208 ILE-GHKDVSLNSVVVSDDG-----KWVYGGGSDGFVMGWEGNVEIVR--WKLACETKAH-EMAVLCVCLVGEFLCSGSA 278 (353)
Q Consensus 208 ~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~ 278 (353)
... ...+.....+.|+.++ ..++....-+.|+.|++...... .........+ ....+.++.+|++++.|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 322 3334445778888776 33444455667777776554221 0111112222 3444555667999999999
Q ss_pred CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
||.|.|++..+.+... ...+.|...|+.+.|+|+ .+++++.+.|..+++..+.-....+
T Consensus 302 dGsVai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pd----sr~~~svSs~~~~~v~~l~vd~~~~ 360 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPD----SRYLASVSSDNEAAVTKLAVDKTMQ 360 (398)
T ss_pred CCcEEEEEeceeeeeE--eehhhheeeeeeEEEcCC----cCcccccccCCceeEEEEeeccccc
Confidence 9999999998776432 235679999999999999 9999999999999999887654444
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=7.2e-19 Score=140.84 Aligned_cols=219 Identities=17% Similarity=0.235 Sum_probs=156.0
Q ss_pred ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe----CCEEEEecCCCcEE
Q 018591 7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV----GNKVFTAHQDSRIR 79 (353)
Q Consensus 7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~s~~~dg~i~ 79 (353)
.+.+.|.||++.|+|++|+ |.+|++||.|-.+.|||.-..+++..+ .+|...|.++.|- ...+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3457899999999999996 999999999999999998888877776 6899999999996 66889999999999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~ 156 (353)
++|+...++.-..- ......+.|..|...|.-++..| +.+.+++.||+++-+|++
T Consensus 121 lfdl~~~~~~~~d~----------------------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR 178 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDH----------------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR 178 (758)
T ss_pred EEeccccccccccc----------------------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence 99998643110000 00112345557899999998877 789999999999999998
Q ss_pred Ccee-------eeec---cccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcc---------ccc----ceee-e
Q 018591 157 DLKC-------LESI---KAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSH---------CHS----LKGI-L 209 (353)
Q Consensus 157 ~~~~-------~~~~---~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~----~~~~-~ 209 (353)
.... ...+ ...--...++.+ .+.+|++|+.|-..++||.+...+. +.+ +.+. .
T Consensus 179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~ 258 (758)
T KOG1310|consen 179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS 258 (758)
T ss_pred CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence 6321 1111 111234456666 3449999999999999995422110 000 0111 1
Q ss_pred eccC----------CceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591 210 EGHK----------DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 210 ~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 247 (353)
.+|. ...++-++|+|+|..|++.-....|+++|+...+
T Consensus 259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 1111 1114668899999888887777789999987654
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=3e-17 Score=126.12 Aligned_cols=260 Identities=13% Similarity=0.161 Sum_probs=177.5
Q ss_pred ccCceEEEEEC----CcEEEEEeCCCcEEEEeCCCceeeEEe------ccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591 15 HVGSVSSLALC----GEFILSASQGKDIIVWQQPDLRMFTKF------GHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 15 h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 84 (353)
-...|++++|. .+.+...+.|..+....++...+...+ ...+++|..+...+..|++|-.+|.+.+|..+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 34678888883 445666657777888887766655443 34467888888888899999999999999998
Q ss_pred cCccc--eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCC--CcEEEEEcCC
Q 018591 85 RSSEN--VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWD--KTLKVWRVAD 157 (353)
Q Consensus 85 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d--g~v~iwd~~~ 157 (353)
.+... ....+ .-...+..+.-.+ ..+++|+.. ..+.+||+++
T Consensus 134 ~~d~hss~l~~l-------------------------------a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 134 SGDLHSSKLIKL-------------------------------ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred CCccccccceee-------------------------------ecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 66411 01111 1112233333333 566668877 7788888876
Q ss_pred ceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC--CCeEEeecCC
Q 018591 158 LKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD--GKWVYGGGSD 235 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 235 (353)
.+.+.+-+.- +++.| +=.+.+|+ +.+.|-+. ...|++++.-
T Consensus 183 ~~qiw~aKNv---------pnD~L-----~LrVPvW~-----------------------tdi~Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 183 SKQIWSAKNV---------PNDRL-----GLRVPVWI-----------------------TDIRFLEGSPNYKFATITRY 225 (412)
T ss_pred ceeeeeccCC---------CCccc-----cceeeeee-----------------------ccceecCCCCCceEEEEecc
Confidence 6443332211 22222 22355554 34445444 6678999999
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA 315 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 315 (353)
+.+++||.+.+..+ .....+..+....+.+.++++++++|..-|.+..||++.++. ....+++-.+.|+++..+|.
T Consensus 226 hqvR~YDt~~qRRP-V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~- 301 (412)
T KOG3881|consen 226 HQVRLYDTRHQRRP-VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPT- 301 (412)
T ss_pred eeEEEecCcccCcc-eeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--eccccCCccCCcceEEEcCC-
Confidence 99999999866422 222333444555566677899999999999999999998773 22337889999999999999
Q ss_pred CCCCeEEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591 316 VGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKS 349 (353)
Q Consensus 316 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 349 (353)
+++|+++|-|..|||+|+++.+.+....-+.
T Consensus 302 ---~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 302 ---HPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred ---CceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 8999999999999999999987776554433
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=2e-17 Score=120.60 Aligned_cols=258 Identities=14% Similarity=0.143 Sum_probs=168.6
Q ss_pred CCCceeeeee-CccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCC-cEEE
Q 018591 4 KSHRSLAVLS-GHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDS-RIRV 80 (353)
Q Consensus 4 ~~~~~~~~l~-~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~i~~ 80 (353)
++.+.+-.++ .|+..|+.+..- ++.|.+-+.|+.+.+|++.-+..+. .|+-.++++.|....+...+... ..-.
T Consensus 43 qt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~ 119 (323)
T KOG0322|consen 43 QTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLE 119 (323)
T ss_pred ecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhhee
Confidence 3455556666 567788888774 7899999999999999987655443 23455666666544444443332 1111
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEEecCCCcEEEEEc
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~ 155 (353)
++-+... . ..........-....++ + -.+..+.+.|..+.. -++++|.++|.+.+||+
T Consensus 120 yp~rgsd----e-~h~~D~g~~tqv~i~dd---------~---~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~ 182 (323)
T KOG0322|consen 120 YPSRGSD----E-THKQDGGDTTQVQIADD---------S---ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL 182 (323)
T ss_pred cCCcccc----h-hhhhccCccceeEccCc---------h---hccccCceeeeeccccccceEEEEEeccCCeEEEEEc
Confidence 1111110 0 00000000000000000 0 013456677776433 47888999999999999
Q ss_pred CCceeee----------eccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591 156 ADLKCLE----------SIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 156 ~~~~~~~----------~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
.++..+. ....|..+|.++.+. -+.=++++.+..+..|++....... ............ +..+.+.
T Consensus 183 S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-q~~~e~~lknpG-v~gvrIR 260 (323)
T KOG0322|consen 183 STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-QIRKEITLKNPG-VSGVRIR 260 (323)
T ss_pred cCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc-cccceEEecCCC-ccceEEc
Confidence 9874333 335689999999993 3366788888889999887552111 112222222233 4889999
Q ss_pred CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591 224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~ 287 (353)
||++.+++++.|+.|++|+.++. .+...+..|...+.+++|+ ..++|+++.|++|.+|++
T Consensus 261 pD~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 PDGKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999998 6777788899999999987 479999999999999986
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=1.2e-15 Score=116.58 Aligned_cols=235 Identities=14% Similarity=0.114 Sum_probs=167.0
Q ss_pred eeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591 57 GSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL 134 (353)
Q Consensus 57 ~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 134 (353)
..+..+.|+ ...|..|+.|| .++++.+.-.. +.... .....|.-+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----~~~~~----------------------------~~~~~IvEm 52 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----CFSKD----------------------------TEGVSIVEM 52 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHH----hhccc----------------------------CCCeEEEEe
Confidence 345666677 44566677775 47887765431 00000 123356667
Q ss_pred EEeCCeEEEecCC--CcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeecc
Q 018591 135 TVYNGLIYSGSWD--KTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGH 212 (353)
Q Consensus 135 ~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 212 (353)
-|+..+++..+.+ +.+++++......+..+. ...+|.++.++.+.|+++-.+. |+|||+++.+ ++..+..-
T Consensus 53 LFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~ 125 (391)
T KOG2110|consen 53 LFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-----LLHTIETT 125 (391)
T ss_pred ecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccce-----eehhhhcc
Confidence 7777666665554 349999998887777764 3678999999888888776654 9999999987 55555544
Q ss_pred CCce--eeEEEEcCCCCeEEee--cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe-EEEE
Q 018591 213 KDVS--LNSVVVSDDGKWVYGG--GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS-IGIW 285 (353)
Q Consensus 213 ~~~~--v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~iw 285 (353)
...+ +.++.+++.+.+++.- ...|.|.+||..+- +....+..|.+++.+++++ |.+||+++..|+ ||+|
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence 2222 2444444455677753 34689999999887 6667778999998888875 999999999886 6999
Q ss_pred ecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 286 KREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 286 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.+.++++....+.-. ....|.+++|+|+ +++|++.|..++|++|.+++..
T Consensus 202 ~v~~G~kl~eFRRG~-~~~~IySL~Fs~d----s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 202 SVPEGQKLYEFRRGT-YPVSIYSLSFSPD----SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EcCCccEeeeeeCCc-eeeEEEEEEECCC----CCeEEEecCCCeEEEEEecccc
Confidence 999998443332211 1346899999999 9999999999999999998765
No 200
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.9e-17 Score=125.86 Aligned_cols=253 Identities=11% Similarity=0.072 Sum_probs=176.0
Q ss_pred EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee-EEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
+.+.+|.+.|.++.|+ +.+|++|+.|..+++|.++..-.... +.+.... ..
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~--------------------------~~ 103 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME--------------------------HP 103 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc--------------------------Cc
Confidence 3456799999999998 88999999999999999876431111 1111110 14
Q ss_pred cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc--cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCc
Q 018591 127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA--HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~ 200 (353)
|...|.|++|+. ..+++|..+++|.+.|+++.+.+..+.. ..+.|+.+.. .++.+++.+.++.|.+||.+....
T Consensus 104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 678999999987 8899999999999999999888777632 2458999888 456999999999999999987651
Q ss_pred ccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccce---e--EEEEEEcCcEEE
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM---A--VLCVCLVGEFLC 274 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~--v~~~~~~~~~l~ 274 (353)
.....+....+....++.|+|.. .+|++.+..+-+-+||.+...........+.+-.. . -.-+.++|..+.
T Consensus 184 ---~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 184 ---PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred ---CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence 12223344444445788999964 67788888889999999876432222222222222 1 123445577777
Q ss_pred EecCCCeEEEEecCCCcceEEeccccCC-------CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 275 SGSADKSIGIWKREAFGKLCRVGAITGH-------EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
+--....-.+||+.+... .+..+ .| ...+.+++|.-+ ..+++|+.+-.|++|.+...
T Consensus 261 siRR~~~P~~~D~~S~R~--~V~k~-D~N~~GY~N~~T~KS~~F~~D-----~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRC--FVLKS-DHNPNGYCNIKTIKSMTFIDD-----YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhhccCCCEEeeeecccc--eeEec-cCCCCcceeeeeeeeeeeecc-----eeeeccCcccceEEEecCCC
Confidence 666555566788776432 12111 12 235788888876 55999999999999998753
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=8.9e-18 Score=134.70 Aligned_cols=245 Identities=18% Similarity=0.248 Sum_probs=160.2
Q ss_pred eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
.+.+++.+|++.|+++.|+ |.+|++|+.|-.+.|||.-..+ ++..+..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-----llhsI~T------------------------- 90 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-----LLHSIST------------------------- 90 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-----eeeeeec-------------------------
Confidence 3456788999999999998 9999999999999999987544 3333332
Q ss_pred eecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC----------ceeeeeccccCcceEEEEE---eCCeEEEEcCC
Q 018591 125 IEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD----------LKCLESIKAHDDAVNGLVA---SKGIVYSASAD 187 (353)
Q Consensus 125 ~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~i~~---~~~~l~~~~~d 187 (353)
+|...|.++.|-| ..+++|..|..|+++|+.. .+....+..|...|..|+. .|+.+.+++.|
T Consensus 91 -gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED 169 (758)
T KOG1310|consen 91 -GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED 169 (758)
T ss_pred -ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC
Confidence 8999999999998 7899999999999999974 2344556778888888888 44599999999
Q ss_pred CcEEEEeCCCCCcc-----cccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591 188 GKIKAWGKELGKSH-----CHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 188 g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
|+|+-+|++....- .......+...--. ..++.++|. ..+|++|+.|...++||.+...+...-..
T Consensus 170 GtirQyDiREph~c~p~~~~~~~l~ny~~~lie-lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~------- 241 (758)
T KOG1310|consen 170 GTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE-LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG------- 241 (758)
T ss_pred cceeeecccCCccCCccccccHHHHHhchhhhe-eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc-------
Confidence 99999999975410 00111111111122 378899985 56899999999999999754321111000
Q ss_pred eEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 262 AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
.....+ . -.++.|+.|.....+...- .+...-..++-+.|+|+ +.++|++-+.+ .|+++++..++.
T Consensus 242 -~~~~~p-p------~~~~cv~yf~p~hlkn~~g--n~~~~~~~~t~vtfnpN---GtElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 242 -TMNTCP-P------KDCRCVRYFSPGHLKNSQG--NLDRYITCCTYVTFNPN---GTELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred -cccCCC-C------cccchhheecCccccCccc--ccccceeeeEEEEECCC---CcEEEEeeCCe-EEEEEeecCCCC
Confidence 000000 0 0123333333221110000 00001123677889998 23555555544 799999988776
Q ss_pred ccc
Q 018591 342 TSD 344 (353)
Q Consensus 342 ~~~ 344 (353)
...
T Consensus 308 ~~~ 310 (758)
T KOG1310|consen 308 PTP 310 (758)
T ss_pred cee
Confidence 543
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=1.3e-16 Score=137.48 Aligned_cols=235 Identities=18% Similarity=0.264 Sum_probs=163.7
Q ss_pred CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeE
Q 018591 66 GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLI 141 (353)
Q Consensus 66 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l 141 (353)
...++++...-.|++||.+.++ .+..+.... .....|+.+.+-+ .++
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~-----~l~~F~n~~------------------------~~~t~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGR-----LLNGFDNGA------------------------FPDTRVSDLELINEQDDALL 1126 (1387)
T ss_pred CceeEEcCCcceEEEEecccCc-----eeccccCCC------------------------CCCCccceeeeecccchhhe
Confidence 5678888877799999998877 444333221 2345688888766 789
Q ss_pred EEecCCCcEEEEEcC-----Cceeeeeccc-------cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 142 YSGSWDKTLKVWRVA-----DLKCLESIKA-------HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 142 ~~~~~dg~v~iwd~~-----~~~~~~~~~~-------~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
++|+.||.|++|+-- +.+.+..+.+ ..+.-.-+.| ..+.|++++.-..|+|||..... ...
T Consensus 1127 Ltas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~-----~~~ 1201 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ-----VVA 1201 (1387)
T ss_pred eeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce-----eEe
Confidence 999999999999742 2233332221 1111123455 45678888778999999998776 444
Q ss_pred eeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeecccccee--EEEEEEc--Cc-EEEEecCCCe
Q 018591 208 ILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA--VLCVCLV--GE-FLCSGSADKS 281 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~~--~~-~l~~~~~dg~ 281 (353)
.+....+..++++.-+. .|+.+++|..||.|++||.+..... ..+...+.|... |..++.. |- .|++|+.||.
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 44444554456665543 4799999999999999999886432 345556666666 8777775 33 5999999999
Q ss_pred EEEEecCCCcceEEeccccCCC--c-CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 282 IGIWKREAFGKLCRVGAITGHE--G-PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~~h~--~-~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
|++||++..... .......|. + .++++..++. ...+|+|+. +.|+||++...+.
T Consensus 1281 I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~h----apiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEH----APIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred EEEEecccCccc-ccceeeeccccCccceeeeeccC----CCeeeecCc-ceEEEEecChhhh
Confidence 999999974211 222223333 3 5999999999 889999999 9999999876543
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=131.05 Aligned_cols=269 Identities=16% Similarity=0.180 Sum_probs=191.2
Q ss_pred eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591 48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125 (353)
Q Consensus 48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
+...+..|.+.|..+.|+ |..|++++.|..|.+||..... ....+..
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-----~~l~f~S-------------------------- 182 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-----PKLSFES-------------------------- 182 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC-----ccccccc--------------------------
Confidence 455678899999999998 9999999999999999998776 2222221
Q ss_pred ecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC-cee--eeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeC
Q 018591 126 EHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD-LKC--LESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGK 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~ 195 (353)
+|...|..-.|-| ..+++++.||.|++=.+.. +.+ ...+..|.++|.-++. ++..|.+++.|+.+.-+|+
T Consensus 183 GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 183 GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred ccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeee
Confidence 7888888777877 7899999999999887643 322 3456679999999998 4458999999999999999
Q ss_pred CCCCcccccceeeeeccCC--ceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccc--------eeeeeeccccceeEE
Q 018591 196 ELGKSHCHSLKGILEGHKD--VSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVR--------WKLACETKAHEMAVL 264 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~ 264 (353)
+...+.... .....+.. .-...++..|.. ..+++++.|..+++||.+.-... +.+..........|+
T Consensus 263 r~~~pa~~~--~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 263 RQDVPAEKF--VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred ccCCcccee--eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 987632111 12222222 123678888865 48999999999999998763211 011111123345678
Q ss_pred EEEEc--CcEEEEecCCCeEEEEecCCCcc----------eEEeccccCCCc--CeEEEEe-ecCCCCCCeEEEEccCCC
Q 018591 265 CVCLV--GEFLCSGSADKSIGIWKREAFGK----------LCRVGAITGHEG--PVKCLQA-SPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 265 ~~~~~--~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~h~~--~v~~~~~-~~~~~~~~~~l~s~~~dg 329 (353)
++.++ +.-|.++..|-.|++|.-..+.. ......++||.. .|..+-| -|. ..++++||.-|
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr----sEyVvSGSDCG 416 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR----SEYVVSGSDCG 416 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc----cceEEecCccc
Confidence 88886 55666677788899996443221 112223778865 4666654 566 78999999999
Q ss_pred eEEEEEcCCCCCcccccC-CCcccC
Q 018591 330 SLRVWWVSKQSSTSDSEE-KSIISC 353 (353)
Q Consensus 330 ~i~iw~~~~~~~~~~~~~-~~~~~c 353 (353)
.|.||+-.+++.+.-.+. +..++|
T Consensus 417 hIFiW~K~t~eii~~MegDr~VVNC 441 (559)
T KOG1334|consen 417 HIFIWDKKTGEIIRFMEGDRHVVNC 441 (559)
T ss_pred eEEEEecchhHHHHHhhcccceEec
Confidence 999999999888776653 445555
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=9.8e-16 Score=134.01 Aligned_cols=265 Identities=12% Similarity=0.201 Sum_probs=168.1
Q ss_pred EeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591 41 WQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR 117 (353)
Q Consensus 41 wd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (353)
|+. .|..+..+..|...+..++.+ +.++++||.||+|++|+...-.......
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------ 1088 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------ 1088 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee------------------------
Confidence 553 678888888899999888887 5799999999999999987643210000
Q ss_pred ccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-------eeeeecccc-CcceEEE-EE---eCC-eEE
Q 018591 118 RHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL-------KCLESIKAH-DDAVNGL-VA---SKG-IVY 182 (353)
Q Consensus 118 ~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~-~~~v~~i-~~---~~~-~l~ 182 (353)
.....+......+.++...+ +.+|+++.||.|++.+++.. .+......+ .+.+.++ ++ ... .++
T Consensus 1089 -rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1089 -RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred -eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEE
Confidence 01112223456677777766 89999999999999998752 112222222 2334444 33 233 778
Q ss_pred EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccccee
Q 018591 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA 262 (353)
Q Consensus 183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 262 (353)
.+..-+.|..||+++... ..........+.|++++.+|.+.++++|+..|.+.+||++-+.+..... .++..+
T Consensus 1168 y~T~~~~iv~~D~r~~~~----~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~---~P~~~~ 1240 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHD----AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE---HPARAP 1240 (1431)
T ss_pred EEEeccceEEecchhhhh----HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc---CcccCC
Confidence 888889999999987751 1111112223345999999999999999999999999998763222111 122344
Q ss_pred EEEEEEc---C--cEEE-Eec-CCCeEEEEecCCCcceEEeccc---------c-------CCCcCeEEEEeecCCCCCC
Q 018591 263 VLCVCLV---G--EFLC-SGS-ADKSIGIWKREAFGKLCRVGAI---------T-------GHEGPVKCLQASPNAVGGG 319 (353)
Q Consensus 263 v~~~~~~---~--~~l~-~~~-~dg~i~iw~~~~~~~~~~~~~~---------~-------~h~~~v~~~~~~~~~~~~~ 319 (353)
+..+..+ + ...+ +++ ..+.|.+|++.++.....+..- . .+.-......+... +
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~----~ 1316 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK----N 1316 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC----C
Confidence 4433332 2 3444 444 5788999999987432211111 0 01111111222222 6
Q ss_pred eEEEEccCCCeEEEEEcCCCCCc
Q 018591 320 FLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 320 ~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
..+++|+.|..|+.||...+...
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceeeecCCccceeeccCCCcccc
Confidence 79999999999999998877644
No 205
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=9e-16 Score=118.67 Aligned_cols=252 Identities=19% Similarity=0.266 Sum_probs=174.8
Q ss_pred ceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccce----eEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591 56 DGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENV----FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA 128 (353)
Q Consensus 56 ~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
..++..+.|. .+.+++|+.|..|++|.++...... +..+ ..+..|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~---------------------------s~Ls~H~ 65 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYL---------------------------SSLSRHT 65 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEe---------------------------ecccCCc
Confidence 4578888886 3489999999999999998765322 2222 2233799
Q ss_pred CceEEEEEeC--CeEEEecCCCcEEEEEcC--------C--------ceeeeeccccCcceEEEEEe--CCeEEEEcCCC
Q 018591 129 DSISCLTVYN--GLIYSGSWDKTLKVWRVA--------D--------LKCLESIKAHDDAVNGLVAS--KGIVYSASADG 188 (353)
Q Consensus 129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg 188 (353)
..|+++.|+| +.|++|+.+|.|.+|-.. + ......+.+|...|..++|. +..+++++.|.
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn 145 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN 145 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc
Confidence 9999999999 799999999999999765 2 22345567899999999993 34899999999
Q ss_pred cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee------eecccccee
Q 018591 189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA------CETKAHEMA 262 (353)
Q Consensus 189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~ 262 (353)
.+++||+..+. +...+..|...+ ..++|.|-++++++-+.|...+.+++.......... .......+.
T Consensus 146 s~~l~Dv~~G~-----l~~~~~dh~~yv-qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 146 SVRLWDVHAGQ-----LLAILDDHEHYV-QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eEEEEEeccce-----eEeecccccccc-ceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 99999999998 888888898887 999999999999999999877777765542211111 000111111
Q ss_pred ---------------EEEEEEcCcEEEEecC---------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC---
Q 018591 263 ---------------VLCVCLVGEFLCSGSA---------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA--- 315 (353)
Q Consensus 263 ---------------v~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--- 315 (353)
-.++.|+|.+|++... -+..++|+-...++ +...+..-..+...+.|+|-.
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r--P~~~lp~~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR--PAARLPSPKKPALAVRFSPVYYEL 297 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC--ceeecCCCCcceEEEEeeeeEEEe
Confidence 1455667777776432 23446666554443 344455555666666666520
Q ss_pred ----C-------CCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 316 ----V-------GGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 316 ----~-------~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
. .-+..++.++.| .|.+||.++..++.
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLA 335 (434)
T ss_pred ccccccccccccccceEEEEeecc-eEEEeccccccceE
Confidence 0 003456666655 79999988765543
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.9e-17 Score=129.98 Aligned_cols=266 Identities=16% Similarity=0.176 Sum_probs=194.4
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
.-+.+.+. |++|+.|+.-|.|-.+|..++++...+.. ...|..+.|- ...+++......+.+||-..-+. .++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl---HCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL---HCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCcEE---eeh
Confidence 34556663 99999999999999999999999988876 4578888886 44455555667999999665431 111
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceE
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN 172 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 172 (353)
.....|..+.|.| -+|++++..|.++--|+.+|+.+..+..-.+.+.
T Consensus 207 -------------------------------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 207 -------------------------------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred -------------------------------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 2335678899999 6777888899999999999999999987778888
Q ss_pred EEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce
Q 018591 173 GLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW 250 (353)
Q Consensus 173 ~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 250 (353)
.+.-+| ..+-+|...|+|.+|.....+ ++..+..|.+.+ .++++.++|+++++.+.|..++|||++.-.
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~ske-----PLvKiLcH~g~V-~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--- 326 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKE-----PLVKILCHRGPV-SSIAVDRGGRYMATTGLDRKVKIWDLRNFY--- 326 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcc-----hHHHHHhcCCCc-ceEEECCCCcEEeecccccceeEeeecccc---
Confidence 787743 377789999999999999887 677777888876 999999999999999999999999999863
Q ss_pred eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCC--CcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 251 KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
....... ......++++.+-+++.+....|.||.-.-......-..+-.| .++|..+.|+|- .+.|-.|-..
T Consensus 327 -ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~----EDvLGIGH~~ 400 (545)
T KOG1272|consen 327 -QLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY----EDVLGIGHAG 400 (545)
T ss_pred -ccceeec-CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH----HHeeeccccC
Confidence 2222222 3345566666666666667778999963221100011111112 358999999997 6666666655
Q ss_pred CeEEE
Q 018591 329 KSLRV 333 (353)
Q Consensus 329 g~i~i 333 (353)
|.-.+
T Consensus 401 G~tsi 405 (545)
T KOG1272|consen 401 GITSI 405 (545)
T ss_pred CceeE
Confidence 54333
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=7.8e-16 Score=123.28 Aligned_cols=197 Identities=18% Similarity=0.255 Sum_probs=141.1
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeecc----ccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCc-----------
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIK----AHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKS----------- 200 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~----------- 200 (353)
--++.|-.-|.|.+.|....+..+.+. -....|+++.| .++.++++-.+|.+.+||......
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 356677777889998876533222221 12478999999 445888888999999997532110
Q ss_pred ------------ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE-
Q 018591 201 ------------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC- 267 (353)
Q Consensus 201 ------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~- 267 (353)
....+...+...... |+..+|+|||++||+.+.||.++|||..+. ++....+..-+..+|++
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~-in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGS-INEFAFSPDGKYLATVSQDGFLRIFDFDTQ----ELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred CCeeEEeeeeccccCCccceeEecccc-ccceeEcCCCceEEEEecCceEEEeeccHH----HHHHHHHhhccceEEEEE
Confidence 000112222222333 489999999999999999999999999987 44444444445555555
Q ss_pred -EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC-------------------------------
Q 018591 268 -LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA------------------------------- 315 (353)
Q Consensus 268 -~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------------------------- 315 (353)
|||++|++|++|--|.||.+...+ .+..-++|.++|+.++|.|-.
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~ 417 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTG 417 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCC
Confidence 569999999999999999999876 777789999999999999410
Q ss_pred CC-------------CCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 316 VG-------------GGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 316 ~~-------------~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
.. ...++.+.+.|-.+.+||+.......
T Consensus 418 S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 418 SAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred CcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 00 12478899999999999998765444
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=1.2e-15 Score=114.55 Aligned_cols=207 Identities=15% Similarity=0.119 Sum_probs=163.8
Q ss_pred cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc---eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCC
Q 018591 127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADL---KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~ 199 (353)
-..+|+|.+|++ ..++++..+..|.||..... +...+++.|...|+.++| ..+.|++++.|..-++|....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 457899999999 78999999999999987654 467889999999999999 34499999999999999984433
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEec
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGS 277 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 277 (353)
...+...+..+.... +++.|+|.++.|++|+....|.+|-++.+..-+......+.+...|.+++|. +-+|++|+
T Consensus 89 --~WkptlvLlRiNrAA-t~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 89 --TWKPTLVLLRINRAA-TCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred --eeccceeEEEeccce-eeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 122333444455555 9999999999999999999999999988765555555566778889999886 56899999
Q ss_pred CCCeEEEEecCCCc-----c----------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 278 ADKSIGIWKREAFG-----K----------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 278 ~dg~i~iw~~~~~~-----~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
.|+..|+|...-.. . -..+.++....+.|..+.|+|. |..|+-.+.|..+.+=|...+.
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s----G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS----GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC----CCEeeEecCCCceEEeecCCCc
Confidence 99999999742110 0 0123334455678999999999 9999999999999999887765
No 209
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.71 E-value=2.2e-15 Score=114.23 Aligned_cols=248 Identities=16% Similarity=0.229 Sum_probs=175.9
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe-CCCceeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEE
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ-QPDLRMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd-~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~ 79 (353)
..+++.++||.+.|+....- .+-+++.+.|.++|||- .+.++.-..+.+ -..+++++.+. ...|+.|-.+|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 34567889999999988773 67899999999999995 455665555533 35678888887 56788888889988
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~ 157 (353)
-+.+...-.. ....+.+..|...+..+-|+. ..+++.+.|..+.---.+.
T Consensus 94 efs~sedfnk----------------------------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 94 EFALSEDFNK----------------------------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred EEEhhhhhhh----------------------------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 8876543210 112334447999999999987 8999999998775544454
Q ss_pred ceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 158 LKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 158 ~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
+..+..+.. ...-+++.+.-.+.+.|...|.+..-.+.... ..+...+.+|...+ .+++|.|....+++|..|..
T Consensus 146 ~~~lg~Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~---~~~i~~~~~h~~~~-~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 146 GNRLGGYNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNG---CQLITTFNGHTGEV-TCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred CCcccceEe-eccCCCCceeeEEEEecccccceEEEEEeecC---CceEEEEcCcccce-EEEEEcCCCcEEEeccccCc
Confidence 444332211 11111222211155666667776665554332 23677888898887 99999999999999999999
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~ 289 (353)
+.+||+.... ....++.+|...+..+..- -+.+++++.||.|.+|+++.
T Consensus 221 vi~wdigg~~---g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 221 VIMWDIGGRK---GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eEEEeccCCc---ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999998763 3455667788777777653 67899999999999999875
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=126.45 Aligned_cols=184 Identities=20% Similarity=0.211 Sum_probs=141.0
Q ss_pred CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRI 78 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i 78 (353)
+.++.-+....|.++|.|-.|+ |.-|+|++.||.|++|. .+|.+..++.....+|+|++|. .+.+++.+. .+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~ 168 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--HI 168 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC--eE
Confidence 4566777888999999999996 88999999999999998 5777777777778899999997 445555543 45
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA 156 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~ 156 (353)
.+=.+.... ..-.|..|.+-|.++.|++ +.+++|+.|-..++||.
T Consensus 169 ~IKpL~~n~--------------------------------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~- 215 (737)
T KOG1524|consen 169 SIKPLAANS--------------------------------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA- 215 (737)
T ss_pred EEeeccccc--------------------------------ceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-
Confidence 443333222 2344668999999999999 99999999999999995
Q ss_pred CceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 157 DLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 157 ~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
.|..+..-..|..+|++++|+++.++..+.-.++|+=..+ ...|..++||+||..++.|+..|
T Consensus 216 ~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~-----------------~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 216 QGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPR-----------------VGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred cCcccccCChhccceeeeeeccccceeeeeeeeeeecCCC-----------------ccceEEEEEcCCCceeeccccCc
Confidence 5777777788999999999966644443333455522222 22358999999999999999999
Q ss_pred cEEE
Q 018591 237 FVMG 240 (353)
Q Consensus 237 ~i~i 240 (353)
.+.+
T Consensus 279 ~v~~ 282 (737)
T KOG1524|consen 279 QLIV 282 (737)
T ss_pred eEEE
Confidence 7765
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=5e-15 Score=124.91 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=149.2
Q ss_pred CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeecc
Q 018591 35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMK 109 (353)
Q Consensus 35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
+..|.+||..... ...+..|...+....|+ ++.|+.++.+ ..|++||+.++... .+..++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---VVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---EEecCC-----------
Confidence 4689999986544 55666777889999998 7788877643 36999999876521 111111
Q ss_pred cceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEE--EcCCceeeeeccccCcceEEEEEeCC--eEE
Q 018591 110 QSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVW--RVADLKCLESIKAHDDAVNGLVASKG--IVY 182 (353)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~--~l~ 182 (353)
+| .....|+| +.|+.+ +.+|.+.+| |+.+++ ...+..+...+....|+++ .++
T Consensus 248 ----------------g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 248 ----------------GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred ----------------Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEE
Confidence 22 23578988 566655 467766555 665554 3445556667788899443 444
Q ss_pred -EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591 183 -SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 183 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
++..+|...+|++..... ....+ .+.. ....|+|+|++++..+.++ +.+||+.++.... . ......
T Consensus 308 f~s~~~g~~~I~~~~~~~~----~~~~l-~~~~---~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~--l--t~~~~~ 374 (429)
T PRK01742 308 FTSDRSGSPQVYRMSASGG----GASLV-GGRG---YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV--L--SSTFLD 374 (429)
T ss_pred EEECCCCCceEEEEECCCC----CeEEe-cCCC---CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE--e--cCCCCC
Confidence 445678888888754321 11122 2222 3467999999998887765 6669988763221 1 111222
Q ss_pred eEEEEEEcCcEEEEecCCCeEEEEecC--CCcceEEeccccCCCcCeEEEEeecC
Q 018591 262 AVLCVCLVGEFLCSGSADKSIGIWKRE--AFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
....++++|++|+.++.++...+|.+. +++ ....+.+|.+.+...+|+|-
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~---~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGR---FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCC---ceEEccCCCCCCCCcccCCC
Confidence 335678889999999999988888763 344 45556778888999999985
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=5.6e-14 Score=105.64 Aligned_cols=181 Identities=15% Similarity=0.219 Sum_probs=132.5
Q ss_pred CcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--C
Q 018591 148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--D 225 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~ 225 (353)
+.|.|||-...+++.++. ...+|.++.+..+.+++.- ++.|++|...+.- .....+.....+. --++..| +
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~----k~l~~~et~~NPk-GlC~~~~~~~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNP----KLLHVIETRSNPK-GLCSLCPTSN 147 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCCh----hheeeeecccCCC-ceEeecCCCC
Confidence 579999977777888875 4789999999888877765 4789999988443 1333333332221 2233444 3
Q ss_pred CCeEEe-ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe-EEEEecCCCcceEEeccccC
Q 018591 226 GKWVYG-GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS-IGIWKREAFGKLCRVGAITG 301 (353)
Q Consensus 226 ~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~ 301 (353)
..+|+. |-.-|.|++-|+...... .......|...|.|++.+ |.++|+++..|+ |||||..+++.+.+++.-.
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~- 224 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV- 224 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-
Confidence 334443 556799999999876321 345678899999888885 999999999987 7999999999555443322
Q ss_pred CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
....|.+++|||+ ..+|+++|+-|+++|+.+......
T Consensus 225 d~A~iy~iaFSp~----~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 225 DRADIYCIAFSPN----SSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred chheEEEEEeCCC----ccEEEEEcCCCeEEEEEeecCCCC
Confidence 2356999999999 999999999999999999875533
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.2e-16 Score=125.51 Aligned_cols=195 Identities=12% Similarity=0.165 Sum_probs=158.8
Q ss_pred EEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591 133 CLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 133 ~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 209 (353)
.+.+.. .+++.|+.-|.|..+|..+++....+.. ...|.++.| .+..+++......+++||-...+ +..+
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE------lHCl 206 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE------LHCL 206 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCcE------Eeeh
Confidence 455554 7899999999999999999998888754 567889999 55566666778899999976554 4444
Q ss_pred eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEec
Q 018591 210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~ 287 (353)
..+.. +..+.|-|..-+|++++..|.++.-|+..+ +++..+....+.+ ++-.|-+..+-+|..+|+|.+|..
T Consensus 207 k~~~~--v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 207 KRHIR--VARLEFLPYHFLLVAASEAGFLKYQDVSTG----KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred hhcCc--hhhhcccchhheeeecccCCceEEEeechh----hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 44443 588999999989999999999999999998 5555555444444 444455778899999999999999
Q ss_pred CCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 288 EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 288 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
...+ ++..+..|.++|.++++.++ |.|++|++.|..++|||+.....+.+...
T Consensus 281 ~ske---PLvKiLcH~g~V~siAv~~~----G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 281 NSKE---PLVKILCHRGPVSSIAVDRG----GRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred CCcc---hHHHHHhcCCCcceEEECCC----CcEEeecccccceeEeeeccccccceeec
Confidence 8877 77788889999999999999 99999999999999999998887766554
No 214
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.68 E-value=2e-13 Score=113.94 Aligned_cols=281 Identities=14% Similarity=0.128 Sum_probs=156.5
Q ss_pred CCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591 5 SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 84 (353)
+|+.+..++-........+.+++.++.++.||.+..+|..+|+.+................++.++.++.+|.+..||.+
T Consensus 84 tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 84 TGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAA 163 (377)
T ss_pred CCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcC
Confidence 44444433332222223334455666666667777777666666655443222111122235556666666667777766
Q ss_pred cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec
Q 018591 85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
+++... ..+.... ....... .+.....+.++.+..++.+..+|.++++.+.+.
T Consensus 164 tG~~~W-----~~~~~~~------------------~~~~~~~----~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 164 TGERLW-----TYSRVTP------------------ALTLRGS----ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CCceee-----EEccCCC------------------ceeecCC----CCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 554110 0000000 0000000 011122357788888999999999998876554
Q ss_pred cccCc----c------e-EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591 165 KAHDD----A------V-NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 165 ~~~~~----~------v-~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
..... . + ....+.++.++.++.+|.+..||.++++ ..-.... ... .... ..+..+++++
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-----~~W~~~~--~~~-~~p~--~~~~~vyv~~ 286 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-----VLWKRDA--SSY-QGPA--VDDNRLYVTD 286 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-----EEEeecc--CCc-cCce--EeCCEEEEEC
Confidence 21100 0 1 1122356788888999999999999887 2222221 111 2222 2456788888
Q ss_pred CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE-EEEee
Q 018591 234 SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK-CLQAS 312 (353)
Q Consensus 234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~~ 312 (353)
.+|.+..+|..+++..++... +.. .........+..+++++.+|.|+++|..+++ .+..++.+...+. +..+.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~-~~~--~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~---~~~~~~~~~~~~~~sp~~~ 360 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDE-LKY--RQLTAPAVVGGYLVVGDFEGYLHWLSREDGS---FVARLKTDGSGIASPPVVV 360 (377)
T ss_pred CCCeEEEEECCCCcEEEcccc-ccC--CccccCEEECCEEEEEeCCCEEEEEECCCCC---EEEEEEcCCCccccCCEEE
Confidence 999999999988855544311 111 1112222357789999999999999999988 4444444443332 22233
Q ss_pred cCCCCCCeEEEEccCCCeEEEE
Q 018591 313 PNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 313 ~~~~~~~~~l~s~~~dg~i~iw 334 (353)
+..|+.++.||.|..+
T Consensus 361 ------~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 361 ------GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ------CCEEEEEeCCceEEEe
Confidence 3458888899998776
No 215
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.67 E-value=2.8e-14 Score=108.38 Aligned_cols=272 Identities=14% Similarity=0.229 Sum_probs=160.0
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----eeEEeccC------------ceeeEEEEEe----CCEEEEe
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-----MFTKFGHG------------DGSVKAVVTV----GNKVFTA 72 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~----~~~l~s~ 72 (353)
.+-|.+|.|+ |++||+|..+|.|.++.-+... ....+..| ...|..+.|. ...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678899996 9999999999999999743221 23334344 3467777775 4567777
Q ss_pred cCCCcEEEEEcccCcccee--EEeeccccccc--eeeeecccceeEeecccceeee-eecCCceEEEEEeC-CeEEEecC
Q 018591 73 HQDSRIRVWKVSRSSENVF--RLVDTLPTTKD--YLGKFMKQSNYVQTRRHHKRLW-IEHADSISCLTVYN-GLIYSGSW 146 (353)
Q Consensus 73 ~~dg~i~~w~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~~l~~~~~ 146 (353)
+.|.+|++|.+.......- ......+.... .......+.... ....+.+++ ..|.--|+++.++. ...+..+.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~-vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE-VEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce-eeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999876543220 00000000000 000001111111 111222333 37888999999998 44444556
Q ss_pred CCcEEEEEcCCce-e--eeecccc-----CcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC--
Q 018591 147 DKTLKVWRVADLK-C--LESIKAH-----DDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-- 213 (353)
Q Consensus 147 dg~v~iwd~~~~~-~--~~~~~~~-----~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 213 (353)
|=.|.+|+++--. . +-.++.+ ..-|++..|+| +.++-.+..|+|++-|++.... +......+....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL-Cd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL-CDAHSKLFEEPEDP 262 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh-hcchhhhhccccCC
Confidence 7889999986321 1 2222222 34567777744 4888889999999999985431 000011111111
Q ss_pred ---------CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc---------cee---EEEEEEc--C
Q 018591 214 ---------DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH---------EMA---VLCVCLV--G 270 (353)
Q Consensus 214 ---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~---v~~~~~~--~ 270 (353)
-..|..+.|+++|+++++-+. -+|++||+................ ... -..++++ +
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 112478999999999988653 479999997653222211111100 111 1344555 4
Q ss_pred cEEEEecCCCeEEEEecCCC
Q 018591 271 EFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~ 290 (353)
.++++|+..+..++|+...+
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 59999999999999996554
No 216
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=1.3e-14 Score=124.98 Aligned_cols=271 Identities=18% Similarity=0.270 Sum_probs=187.9
Q ss_pred ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEe------ccCceeeEE-EEEeCCEEEEecCCCcEEEEEcccCc
Q 018591 15 HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKF------GHGDGSVKA-VVTVGNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~~-~~~~~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
|-+++++.++-.++|.+|.. -.|.+||+.++..+..+ +.| .+.. +...+.+++++..-+.+..=+.....
T Consensus 6 ~~~~l~~~~~~~~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 6 SLGPLNLPQLVSDYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred ccccccchhhccceeeecCC-CceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhh
Confidence 34566666664477776654 47999999888765443 333 0000 11114555665554444433322211
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCce--EEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI--SCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK 165 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 165 (353)
. . .-...| ..+.+....++.+..++.+.+||...+.....+.
T Consensus 83 ~------~------------------------------~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~ 126 (967)
T KOG0974|consen 83 I------E------------------------------RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ 126 (967)
T ss_pred h------h------------------------------hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcC
Confidence 0 0 011111 2233334788888889999999998777766664
Q ss_pred ccCcc-eEEE-EE--eCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 166 AHDDA-VNGL-VA--SKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 166 ~~~~~-v~~i-~~--~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
..... ..+. -+ +.+ ++++|+.-+.|.+|+....+ ....+.+|.+.+ .++.++.||+++++.+.|..++
T Consensus 127 ~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-----~p~~l~GHeG~i-F~i~~s~dg~~i~s~SdDRsiR 200 (967)
T KOG0974|consen 127 SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-----KPIRLKGHEGSI-FSIVTSLDGRYIASVSDDRSIR 200 (967)
T ss_pred CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-----CcceecccCCce-EEEEEccCCcEEEEEecCccee
Confidence 43221 1122 22 233 88999999999999998444 233688999987 9999999999999999999999
Q ss_pred EeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCc-CeEEEEeecCCCCC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG-PVKCLQASPNAVGG 318 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~ 318 (353)
+|++.+... ......+|...+..+.+..+.+++++.|.+.++|+.+. . .+..+.+|.+ .|..++..++
T Consensus 201 lW~i~s~~~---~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~---~l~~y~~h~g~~iw~~~~~~~---- 269 (967)
T KOG0974|consen 201 LWPIDSREV---LGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-T---QLEVYDEHSGKGIWKIAVPIG---- 269 (967)
T ss_pred eeecccccc---cCcccccccceeEEEEeccceeEEeccceEEEEEeccc-c---eehhhhhhhhcceeEEEEcCC----
Confidence 999998742 22467789999999888877999999999999997654 3 3446777754 6999999998
Q ss_pred CeEEEEccCCCeEEEEEcCCCCC
Q 018591 319 GFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 319 ~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
...++|++.||.+++|++.....
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ceEEEeeccCcchhhhhhhcccc
Confidence 88999999999999999876543
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.8e-15 Score=115.32 Aligned_cols=190 Identities=14% Similarity=0.155 Sum_probs=134.2
Q ss_pred EEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591 20 SSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVD 95 (353)
Q Consensus 20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 95 (353)
.+++|+ |..|++|+.||++|||++++...+.....|.+.|.++.|+ +..|++.+.| ..+||+.+++. .+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-----~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-----ALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-----hhh
Confidence 567775 8899999999999999999999888888899999999998 7899999999 99999999884 222
Q ss_pred ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-C-----eEE-EecCCCcEEEEEcCCcee-----eee
Q 018591 96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-G-----LIY-SGSWDKTLKVWRVADLKC-----LES 163 (353)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-----~l~-~~~~dg~v~iwd~~~~~~-----~~~ 163 (353)
..... +-......+.|.. + +++ ....-+.|+.||+...+. ..+
T Consensus 222 ~~t~~-------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 222 RKTPF-------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred hcCCc-------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 11100 1111222333332 1 222 223334566665533211 111
Q ss_pred ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEe
Q 018591 164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW 241 (353)
Q Consensus 164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 241 (353)
.-.-...|.+++. ++.+++.|+.||.|.+++..+.+ ......+.|.. .|+.+.|+|+.+++++.+.+....+.
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq----~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ----RLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee----eeEeehhhhee-eeeeEEEcCCcCcccccccCCceeEE
Confidence 1222457899999 34489999999999999998876 23344455666 55999999999999999999988888
Q ss_pred eccc
Q 018591 242 EGNV 245 (353)
Q Consensus 242 d~~~ 245 (353)
.+..
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 7765
No 218
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.66 E-value=4.8e-13 Score=111.63 Aligned_cols=279 Identities=17% Similarity=0.133 Sum_probs=177.1
Q ss_pred EEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591 21 SLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT 100 (353)
Q Consensus 21 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 100 (353)
.....++.++.++.+|.|..+|..+|+.+..+.............++.++.++.+|.+..+|.++++... ....
T Consensus 60 ~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W-----~~~~- 133 (377)
T TIGR03300 60 QPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELW-----RAKL- 133 (377)
T ss_pred ceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEee-----eecc-
Confidence 3345578899999999999999999999887765443333445568889999999999999998876211 1100
Q ss_pred cceeeeecccceeEeecccceeeeeecCCceE-EEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcce-----EEE
Q 018591 101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV-----NGL 174 (353)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~i 174 (353)
...+. ......+.++.++.+|.++.||.++++.+.+++...... .+.
T Consensus 134 ---------------------------~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 134 ---------------------------SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASP 186 (377)
T ss_pred ---------------------------CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence 01111 111233677888889999999999999887765432211 112
Q ss_pred EEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-eeeEEEEcC--CCCeEEeecCCCcEEEeecccccccee
Q 018591 175 VASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-SLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWK 251 (353)
Q Consensus 175 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 251 (353)
...++.++.+..++.+..+|.++++...........+.... ....+.-+| .+..+++++.+|.+..||..+++..+.
T Consensus 187 ~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 187 VIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred EEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 23456788888899999999988872211100000000000 000000111 245788888899999999998865554
Q ss_pred eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
.. .. ........+..+++++.+|.++.+|..+++.......+.. ....+... . +..|++++.||.|
T Consensus 267 ~~--~~----~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i--~----g~~l~~~~~~G~l 332 (377)
T TIGR03300 267 RD--AS----SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPAV--V----GGYLVVGDFEGYL 332 (377)
T ss_pred ec--cC----CccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCEE--E----CCEEEEEeCCCEE
Confidence 32 11 1223334677888889999999999998874332222211 11222222 2 5688899999999
Q ss_pred EEEEcCCCCCccccc
Q 018591 332 RVWWVSKQSSTSDSE 346 (353)
Q Consensus 332 ~iw~~~~~~~~~~~~ 346 (353)
.++|..+++.+...+
T Consensus 333 ~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 333 HWLSREDGSFVARLK 347 (377)
T ss_pred EEEECCCCCEEEEEE
Confidence 999999998876554
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1e-12 Score=99.00 Aligned_cols=232 Identities=12% Similarity=0.175 Sum_probs=151.8
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce--eeEEEEEeCCEEEEec-CC------CcEEEEEcccC
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG--SVKAVVTVGNKVFTAH-QD------SRIRVWKVSRS 86 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~s~~-~d------g~i~~w~~~~~ 86 (353)
...+++|+ ..-++.|..+ -.+||+.+..+.......+.+ .+..+-|-.++|+-.+ .+ ..+.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 34558886 4456656554 589999876444333322222 3333444466665443 22 47999992222
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcC-Cceeeeecc
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVA-DLKCLESIK 165 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~ 165 (353)
. ++.++ ....+|.++.+.++.+++.-. +.|++|... +.+.+..+.
T Consensus 86 ~-----~i~el----------------------------~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e 131 (346)
T KOG2111|consen 86 R-----CIIEL----------------------------SFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE 131 (346)
T ss_pred c-----EEEEE----------------------------EeccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee
Confidence 2 22222 467789999999987777764 779999987 455555553
Q ss_pred cc--CcceEEEEE-eCC-eEE-EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc-EE
Q 018591 166 AH--DDAVNGLVA-SKG-IVY-SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF-VM 239 (353)
Q Consensus 166 ~~--~~~v~~i~~-~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~ 239 (353)
.. ...+.+++- .+. .|+ -|-.-|.|.+-|+...+.. ......+|...+ .+++.+.+|..+|+++..|+ |+
T Consensus 132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~---~p~~I~AH~s~I-acv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN---APSIINAHDSDI-ACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC---CceEEEcccCce-eEEEEcCCccEEEEeccCcEEEE
Confidence 22 233444443 222 333 3445689999999877621 246778888876 99999999999999999996 79
Q ss_pred EeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 290 (353)
|||..++....++..-. ....+.++++ +..+|++++..|+++||.++..
T Consensus 208 IFdt~~g~~l~E~RRG~--d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGV--DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEcCCCcEeeeeecCC--chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999995444333222 2344555555 5889999999999999998763
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=2e-14 Score=115.36 Aligned_cols=133 Identities=18% Similarity=0.283 Sum_probs=106.3
Q ss_pred cCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc--------------e--------------eeeeccccCcceEEEE
Q 018591 127 HADSISCLTVYN---GLIYSGSWDKTLKVWRVADL--------------K--------------CLESIKAHDDAVNGLV 175 (353)
Q Consensus 127 ~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~--------------~--------------~~~~~~~~~~~v~~i~ 175 (353)
.+..++|+.|-+ ..++++-.+|.+++||..-. . ++..+..-.+.|+.++
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 347899999988 78888999999999976310 0 1111112345777888
Q ss_pred EeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee
Q 018591 176 ASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA 253 (353)
Q Consensus 176 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 253 (353)
|+++ +|++.+.||.+||||..+.+ +...++...+.. .|++|||||++|++|++|..|.+|.+... +.+
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYFGGL-LCvcWSPDGKyIvtGGEDDLVtVwSf~er----RVV 367 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYFGGL-LCVCWSPDGKYIVTGGEDDLVTVWSFEER----RVV 367 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhccce-EEEEEcCCccEEEecCCcceEEEEEeccc----eEE
Confidence 8333 99999999999999999887 666666666666 99999999999999999999999999887 777
Q ss_pred eeccccceeEEEEEEc
Q 018591 254 CETKAHEMAVLCVCLV 269 (353)
Q Consensus 254 ~~~~~~~~~v~~~~~~ 269 (353)
..-.+|..+|..++||
T Consensus 368 ARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFD 383 (636)
T ss_pred EeccccccceeeEeec
Confidence 7888899998888877
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=1.3e-12 Score=106.91 Aligned_cols=276 Identities=12% Similarity=0.143 Sum_probs=165.4
Q ss_pred CcEE-EEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591 26 GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 26 ~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
++++ ++-..+|.|.+.|..+.+.+..+......-..+.++ ++++++++.||.|.++|+.+.+ .+..++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-----~v~~i~---- 75 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-----VVATIK---- 75 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-----EEEEEE----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-----EEEEEe----
Confidence 3445 455678999999999999999998654443445565 7899999999999999999887 443332
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeecccc-------CcceE
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKAH-------DDAVN 172 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~ 172 (353)
-.....++++++ ++++++ ..++.+.++|.++.+.++.+... ...+.
T Consensus 76 ------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~ 131 (369)
T PF02239_consen 76 ------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA 131 (369)
T ss_dssp -------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred ------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence 223456788877 666655 57899999999999998887532 23556
Q ss_pred EEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeecccccc
Q 018591 173 GLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIV 248 (353)
Q Consensus 173 ~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~ 248 (353)
++..+ .+ ++++.-..+.|.+.|..+.+. +..........+ ....|+|++++++++ ..+..|-++|.++...
T Consensus 132 aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~----~~~~~i~~g~~~-~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 132 AIVASPGRPEFVVNLKDTGEIWVVDYSDPKN----LKVTTIKVGRFP-HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEE-SSSSEEEEEETTTTEEEEEETTTSSC----EEEEEEE--TTE-EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eEEecCCCCEEEEEEccCCeEEEEEeccccc----cceeeecccccc-cccccCcccceeeecccccceeEEEeeccceE
Confidence 66652 22 445555568888888776641 222222222333 789999999987664 4566777777766422
Q ss_pred ceee---------------------------------------------------eeeccccce-eEEEEEEcCcEEEEe
Q 018591 249 RWKL---------------------------------------------------ACETKAHEM-AVLCVCLVGEFLCSG 276 (353)
Q Consensus 249 ~~~~---------------------------------------------------~~~~~~~~~-~v~~~~~~~~~l~~~ 276 (353)
.... ...+..... --...+|+++++.+.
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 1110 000000000 112334556777776
Q ss_pred ----cCCCeEEEEecCCCcceEEeccccCC-CcCeEEEEeecCCCCCCeEEEEccC--CCeEEEEEcCCCCCccccc
Q 018591 277 ----SADKSIGIWKREAFGKLCRVGAITGH-EGPVKCLQASPNAVGGGFLLYSGSL--DKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 277 ----~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~ 346 (353)
...+.|.++|.++.+ .+..+... ...+..+.|+++ |+.+..+.. ++.|.+||..+.+.+....
T Consensus 287 ~~~~~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~d----G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPD----GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -TT-SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TT----SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccCCCCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCC----CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 456889999999876 33333211 234899999999 775555443 3479999999988877655
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1e-12 Score=100.73 Aligned_cols=290 Identities=12% Similarity=0.108 Sum_probs=173.6
Q ss_pred ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEe---CCEEEEecCCCcEEEEEcccCcccee
Q 018591 18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
.+..++|+ -..+|++..|-.|++||-.+ +....++. ....|++++|. +..|+.|+.. -|.+|..+.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 56677887 34578888999999999766 44444433 35689999997 6678888774 689998765421000
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCCceeeeeccccC
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVADLKCLESIKAHD 168 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~ 168 (353)
.+...... ........+| .+|++|.|++ ..+++++ .|..|.+||..++..+.......
T Consensus 178 -~~~~~s~~-----------------~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl 238 (445)
T KOG2139|consen 178 -NIRMMSTH-----------------HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL 238 (445)
T ss_pred -cccccccc-----------------chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence 00000000 0000111145 6899999999 5666665 46789999999988776654456
Q ss_pred cceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 169 DAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 169 ~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
+.+.-+.|+|+ .++++.-|+..++|+....- .........+. |...+|+|+|++|..... |.-++|.+.-.
T Consensus 239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-----t~erw~lgsgr-vqtacWspcGsfLLf~~s-gsp~lysl~f~ 311 (445)
T KOG2139|consen 239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-----TKERWILGSGR-VQTACWSPCGSFLLFACS-GSPRLYSLTFD 311 (445)
T ss_pred CceeeEEEcCCCCEEEEecccceeeeehhcccc-----eecceeccCCc-eeeeeecCCCCEEEEEEc-CCceEEEEeec
Confidence 78888999444 89999999999999654432 12222222333 599999999987654432 22344443221
Q ss_pred c--cce---------eeeeecc------c---cceeEEEEEE--cCcEEEEecCCCe--------EEEEecCCCcceEEe
Q 018591 247 I--VRW---------KLACETK------A---HEMAVLCVCL--VGEFLCSGSADKS--------IGIWKREAFGKLCRV 296 (353)
Q Consensus 247 ~--~~~---------~~~~~~~------~---~~~~v~~~~~--~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~ 296 (353)
. ... .++..+. + -.+...++++ +|.+||+....+. |.+||.+..-.....
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels 391 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS 391 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE
Confidence 1 000 1111111 0 0233445555 5999998766543 667777653322221
Q ss_pred c-cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 297 G-AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 297 ~-~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
. -+.+- .....+.|+|..+ ++.+|..+=..|.+.-|++.
T Consensus 392 ~cg~i~g-e~P~~IsF~pl~n-~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 392 YCGMIGG-EYPAYISFGPLKN-EGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ecccccC-CCCceEEeeeccc-CCcEEEEEeccCceEeeeeE
Confidence 0 11111 1255677887653 37777777777888887764
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=6.4e-14 Score=108.15 Aligned_cols=207 Identities=14% Similarity=0.216 Sum_probs=151.8
Q ss_pred eeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCce----eeEEeccCceeeEEEEEe---CCEEEEecCC--CcEEEE
Q 018591 11 VLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLR----MFTKFGHGDGSVKAVVTV---GNKVFTAHQD--SRIRVW 81 (353)
Q Consensus 11 ~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~---~~~l~s~~~d--g~i~~w 81 (353)
+..+.+++|..++.....|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-. ...+++|+.. ..+++|
T Consensus 100 ~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3445567777777777788889999999999987443 22233332 344444443 5678889998 899999
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~ 157 (353)
|+++.. ..+ .....+.... . ..-.-.++++.|.+ ..|++++.-+.+++||.+.
T Consensus 179 dle~~~-qiw-~aKNvpnD~L--~-------------------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 179 DLEQSK-QIW-SAKNVPNDRL--G-------------------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH 235 (412)
T ss_pred ecccce-eee-eccCCCCccc--c-------------------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence 998763 111 1111111100 0 01222455677765 6899999999999999975
Q ss_pred -ceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeec
Q 018591 158 -LKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 158 -~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
.+++..+..-..+++++.. +.+.+++|...|.+..||++.++ .... +.+..+.+ +++..+|...++++++
T Consensus 236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-----l~g~~~kg~tGsi-rsih~hp~~~~las~G 309 (412)
T KOG3881|consen 236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-----LLGCGLKGITGSI-RSIHCHPTHPVLASCG 309 (412)
T ss_pred cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce-----eeccccCCccCCc-ceEEEcCCCceEEeec
Confidence 4577888777889999988 55599999999999999999987 4444 77777776 9999999999999999
Q ss_pred CCCcEEEeeccccc
Q 018591 234 SDGFVMGWEGNVEI 247 (353)
Q Consensus 234 ~dg~i~i~d~~~~~ 247 (353)
-|..++|+|+++..
T Consensus 310 LDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRK 323 (412)
T ss_pred cceeEEEeecccch
Confidence 99999999999863
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6.1e-13 Score=107.95 Aligned_cols=275 Identities=12% Similarity=0.175 Sum_probs=182.6
Q ss_pred CccCceEEEEEC--CcE-EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeC--CEEEEecCCCcEEEEEcccCcc
Q 018591 14 GHVGSVSSLALC--GEF-ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVG--NKVFTAHQDSRIRVWKVSRSSE 88 (353)
Q Consensus 14 ~h~~~v~~~~~~--~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~~w~~~~~~~ 88 (353)
+|...-+.|..+ |+| +|||..--.|++||+....+...-......|.-...+. ..++.-..|.+|.+-..-...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h- 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH- 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee-
Confidence 366777788775 765 56777788999999876544322222233344333332 234444455565443221100
Q ss_pred ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
+.. .-...-..++++. --|+.++....|+-++++.|..+..+..
T Consensus 128 --y~~--------------------------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 128 --YRT--------------------------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred --eee--------------------------------ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 000 0111223455554 2344444456799999999999999988
Q ss_pred cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec----------cCCceeeEEEEcCCCCeEEeecC
Q 018591 167 HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG----------HKDVSLNSVVVSDDGKWVYGGGS 234 (353)
Q Consensus 167 ~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~ 234 (353)
..+.++++.. ..+++++|+.+|.|-.||.++.. ....+.. .....|+++.|+.+|-.+++|..
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-----rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-----RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhh-----hheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence 8899999998 34588888889999999999876 2222211 12233699999999999999999
Q ss_pred CCcEEEeeccccccceeeeeeccccceeEEEEEEc----CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~ 310 (353)
+|.+.|||++...+ +...-.+...++..+.|. ++.+++ .....++|||-.+++. ...+. .+..++.++
T Consensus 249 ~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~---~asiE-pt~~lND~C 320 (703)
T KOG2321|consen 249 TGSVLIYDLRASKP---LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKP---MASIE-PTSDLNDFC 320 (703)
T ss_pred CCcEEEEEcccCCc---eeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCc---eeecc-ccCCcCcee
Confidence 99999999998742 223334456678888874 334444 4567899999999884 33333 344599999
Q ss_pred eecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+-|+ +-+++++-+++.+..|=+..-.
T Consensus 321 ~~p~----sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 321 FVPG----SGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred eecC----CceEEEecCCCcceeEEccccC
Confidence 9999 8899999999988888776543
No 225
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.61 E-value=2.9e-12 Score=105.00 Aligned_cols=233 Identities=12% Similarity=0.167 Sum_probs=139.1
Q ss_pred EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cC
Q 018591 70 FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SW 146 (353)
Q Consensus 70 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~ 146 (353)
++...++.|.+|++.+.. ....+..+ .+.+....+.++| ++|+++ ..
T Consensus 6 ~~~~~~~~I~~~~~~~~g--~l~~~~~~----------------------------~~~~~~~~l~~spd~~~lyv~~~~ 55 (330)
T PRK11028 6 IASPESQQIHVWNLNHEG--ALTLLQVV----------------------------DVPGQVQPMVISPDKRHLYVGVRP 55 (330)
T ss_pred EEcCCCCCEEEEEECCCC--ceeeeeEE----------------------------ecCCCCccEEECCCCCEEEEEECC
Confidence 344778999999996432 11222222 2234456778887 566555 45
Q ss_pred CCcEEEEEcCC-cee--eeeccccCcceEEEEEeC-C-eEEEEc-CCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591 147 DKTLKVWRVAD-LKC--LESIKAHDDAVNGLVASK-G-IVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 147 dg~v~iwd~~~-~~~--~~~~~~~~~~v~~i~~~~-~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
++.|.+|+++. ++. +.... .......+++++ + .+++++ .++.|.+|++.+... .........+. ..+ ..+
T Consensus 56 ~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~~-~~~-~~~ 131 (330)
T PRK11028 56 EFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-PVAPIQIIEGL-EGC-HSA 131 (330)
T ss_pred CCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-CCCceeeccCC-Ccc-cEe
Confidence 88999999863 332 22222 233456788843 3 555554 488999999974321 00112222222 223 778
Q ss_pred EEcCCCCeEEe-ecCCCcEEEeeccccccce----eeeeeccccceeEEEEEEcCcEEEEecC-CCeEEEEecCCC-cce
Q 018591 221 VVSDDGKWVYG-GGSDGFVMGWEGNVEIVRW----KLACETKAHEMAVLCVCLVGEFLCSGSA-DKSIGIWKREAF-GKL 293 (353)
Q Consensus 221 ~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~-dg~i~iw~~~~~-~~~ 293 (353)
+++|+++++++ ...++.|.+||+....... .......+....-..+.+++++++++.. ++.|.+|+++.. ...
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 89999988865 4556999999997632110 0001111222233566778888887765 999999999742 122
Q ss_pred EEeccccCC------CcCeEEEEeecCCCCCCeEEEEccC-CCeEEEEEcCCCC
Q 018591 294 CRVGAITGH------EGPVKCLQASPNAVGGGFLLYSGSL-DKSLRVWWVSKQS 340 (353)
Q Consensus 294 ~~~~~~~~h------~~~v~~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~ 340 (353)
..+..+..+ ......+.++|+ +++|+++.. ++.|.+|++.+..
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pd----g~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPD----GRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCC----CCEEEEecCCCCeEEEEEEeCCC
Confidence 233332211 123346889999 888888854 7899999996543
No 226
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.5e-13 Score=113.77 Aligned_cols=195 Identities=14% Similarity=0.041 Sum_probs=124.6
Q ss_pred ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCcee--eeeccccCcceEEEEEeCC--eEEEE-cCCCcEEEE--
Q 018591 126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKC--LESIKAHDDAVNGLVASKG--IVYSA-SADGKIKAW-- 193 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~--~l~~~-~~dg~i~iw-- 193 (353)
.|...+....|+| +.|+..+.+ ..|++||+.+++. +..+.++ ....+|+++ .|+.+ +.+|.+.+|
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEE
Confidence 5677899999999 677766543 4699999987753 3334333 346788433 56554 467876655
Q ss_pred eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
|+.++. ...+..+... +....|+|||+.++.. ..+|...+|++.......... .+......++++|++
T Consensus 278 d~~~~~------~~~lt~~~~~-~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~~~~~~SpDG~~ 346 (429)
T PRK01742 278 GANGGT------PSQLTSGAGN-NTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRGYSAQISADGKT 346 (429)
T ss_pred ECCCCC------eEeeccCCCC-cCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCCCCccCCCCCCE
Confidence 555544 2333444433 3789999999976654 467888888875432211221 111123456778999
Q ss_pred EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC--CCCCccc
Q 018591 273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS--KQSSTSD 344 (353)
Q Consensus 273 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~--~~~~~~~ 344 (353)
|+..+.++ +.+||+.+++.. .+. ..+ ...++.|+|+ |++|+.++.+|.+.+|.+. +++....
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~-~lt--~~~--~~~~~~~sPd----G~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTE-VLS--STF--LDESPSISPN----GIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeE-Eec--CCC--CCCCceECCC----CCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 98887765 556999887532 111 112 2356789999 9999999999988888763 3444433
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=8e-12 Score=105.36 Aligned_cols=228 Identities=12% Similarity=0.038 Sum_probs=139.5
Q ss_pred cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec---CCCcEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591 37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH---QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS 111 (353)
Q Consensus 37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
.|.+||....... .+..+...+....|+ |+.|+..+ .+..+.+|++.+++.. .+..
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l~~--------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVAS--------------- 240 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---EccC---------------
Confidence 7999998655443 334456678888887 77777543 2357889998776521 1111
Q ss_pred eeEeecccceeeeeecCCceEEEEEeC--CeEEE-ecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEE
Q 018591 112 NYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS-GSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSA 184 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~ 184 (353)
....+....|+| +.|+. .+.+| .|++||+.+++..... .+...+....|+++ .++..
T Consensus 241 ---------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~ 304 (429)
T PRK03629 241 ---------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYT 304 (429)
T ss_pred ---------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEE
Confidence 122234578888 45554 34454 5889999887655443 34456778888433 55555
Q ss_pred cC-CCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeeccc
Q 018591 185 SA-DGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKA 258 (353)
Q Consensus 185 ~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~ 258 (353)
+. ++. |..+|+.+++ . ..+....... ....|+|+|++++..+.+ ..|.+||+.++... ... ..
T Consensus 305 s~~~g~~~Iy~~d~~~g~-----~-~~lt~~~~~~-~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt--~~ 373 (429)
T PRK03629 305 SDQAGRPQVYKVNINGGA-----P-QRITWEGSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLT--DT 373 (429)
T ss_pred eCCCCCceEEEEECCCCC-----e-EEeecCCCCc-cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeC--CC
Confidence 44 444 4445666554 2 2222222222 678899999998775543 35888898776321 111 11
Q ss_pred cceeEEEEEEcCcEEEEecCCCe---EEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 259 HEMAVLCVCLVGEFLCSGSADKS---IGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 259 ~~~~v~~~~~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.......++++|++|+.++.++. +.++++.. + ....+.+|.+.+...+|+|-
T Consensus 374 ~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~---~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 374 FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-R---FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-C---CeEECccCCCCcCCcccCCC
Confidence 22233567789999988887664 67777754 3 23445678888999999983
No 228
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.53 E-value=1.2e-12 Score=99.67 Aligned_cols=247 Identities=18% Similarity=0.264 Sum_probs=177.8
Q ss_pred eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591 47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124 (353)
Q Consensus 47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (353)
.++..+++|...+++...- ..-+++.+.|.++++|--.+..+..... .
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI------------------------------~ 64 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI------------------------------Y 64 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh------------------------------h
Confidence 3456678888888776554 6789999999999999755433211111 1
Q ss_pred eecCCceEEEEEeC--CeEEEecCCCcEEEEEcC----CceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCC
Q 018591 125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA----DLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKE 196 (353)
Q Consensus 125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~ 196 (353)
.....+++++.+.+ ..|++|-.+|++.-+.+. .....+....|...+..+.| ++..+++.+.|..+.---.+
T Consensus 65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence 13456788888888 788999999999988653 34556677789999999999 66689999998877655555
Q ss_pred CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEE
Q 018591 197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLC 274 (353)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 274 (353)
.+. -+..+.-.... +++.+.-. +...|...|.|..-.+... ...++..+.+|...+.++.|+ ...|+
T Consensus 145 ~~~-----~lg~Y~~~~~~--t~~~~d~~--~~fvGd~~gqvt~lr~~~~--~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf 213 (404)
T KOG1409|consen 145 SGN-----RLGGYNFETPA--SALQFDAL--YAFVGDHSGQITMLKLEQN--GCQLITTFNGHTGEVTCLKWDPGQRLLF 213 (404)
T ss_pred cCC-----cccceEeeccC--CCCceeeE--EEEecccccceEEEEEeec--CCceEEEEcCcccceEEEEEcCCCcEEE
Confidence 444 11111100000 11112111 5667777777777665544 235677889999999999998 67899
Q ss_pred EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+|..|..+.+||+--.+. ...++.+|...|..+...+. -+.|.+++.||.|.+|+.+...
T Consensus 214 Sg~~d~~vi~wdigg~~g--~~~el~gh~~kV~~l~~~~~----t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 214 SGASDHSVIMWDIGGRKG--TAYELQGHNDKVQALSYAQH----TRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccccCceEEEeccCCcc--eeeeeccchhhhhhhhhhhh----heeeeeccCCCeEEEEecccee
Confidence 999999999999975443 45568899999999999988 8899999999999999987543
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=6.7e-13 Score=114.77 Aligned_cols=182 Identities=15% Similarity=0.199 Sum_probs=147.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceee-EEEEE-----eCCEEEEecCCCcEEEEEcccCccceeEEeecccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSV-KAVVT-----VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPT 99 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v-~~~~~-----~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 99 (353)
...++.+..+..+.+||...+.....+.+..... .+... ..-++++|+.-+.|.+|+........
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--------- 169 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI--------- 169 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc---------
Confidence 5688888999999999988877776665533222 12111 14478899999999999987333111
Q ss_pred ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-eccccCcceEEEEE
Q 018591 100 TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-SIKAHDDAVNGLVA 176 (353)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~i~~ 176 (353)
.+.+|.+.|..+.++. .++++.+.|.++++|++++.+... ..-+|+..|..+++
T Consensus 170 -----------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 170 -----------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF 226 (967)
T ss_pred -----------------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence 2338999999999966 999999999999999999987766 66689999999999
Q ss_pred eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591 177 SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 177 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
.++.+++++.|-+.++|+..... ...+..|...-+..++..++...+++++.|+.+++|++..
T Consensus 227 ~~n~i~t~gedctcrvW~~~~~~------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 227 LPNRIITVGEDCTCRVWGVNGTQ------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceeEEeccceEEEEEecccce------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 88899999999999999776554 4478888888889999999999999999999999998765
No 230
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=4.6e-12 Score=103.24 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=117.5
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeecc--ccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIK--AHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
..++-|...|.|.+|+...++....+. .|.+.|+++.+.++ .|.+++.|+.+..|+..... ..+.+.....
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~ 145 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP 145 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC
Confidence 578889999999999999999888775 68999999998444 89999999999999999887 7777777777
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-------CcEEEE-ecCCCeEEEEe
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-------GEFLCS-GSADKSIGIWK 286 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~~-~~~dg~i~iw~ 286 (353)
.+ .+++++||+..+++++ +.|++||+++. +....+.+|.+++.++++- |.++.+ ...+.-+.+|-
T Consensus 146 ~~-~sl~is~D~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 146 LV-SSLCISPDGKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred cc-ceEEEcCCCCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 66 9999999999999885 56999999998 8889999999999999883 455554 44566688887
Q ss_pred cCC
Q 018591 287 REA 289 (353)
Q Consensus 287 ~~~ 289 (353)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 665
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.2e-11 Score=104.81 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=137.3
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
..|.+||.... ..+.+..+...+....|+ ++.|+..+.+ ..|.+||+.++... .+.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l~--------------- 244 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LVA--------------- 244 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Eec---------------
Confidence 46999998544 444455556778888887 7778876633 46999999776521 111
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYS 183 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~ 183 (353)
...+...+..|+| +.+ ++.+.+| .|++||+.+++.. .+..+.......+|++ + .++.
T Consensus 245 ---------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f 308 (433)
T PRK04922 245 ---------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYF 308 (433)
T ss_pred ---------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEE
Confidence 1223344678888 444 4445555 5999999887653 4445555556778843 3 5555
Q ss_pred Ec-CCCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeecc
Q 018591 184 AS-ADGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 184 ~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~ 257 (353)
.+ .+|. |.++|+.+++ ... +....... ...+|+|+|++++..+.++ .|.+||+.++... ... .
T Consensus 309 ~sd~~g~~~iy~~dl~~g~-----~~~-lt~~g~~~-~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt--~ 377 (433)
T PRK04922 309 TSDRGGRPQIYRVAASGGS-----AER-LTFQGNYN-ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT--P 377 (433)
T ss_pred EECCCCCceEEEEECCCCC-----eEE-eecCCCCc-cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC--C
Confidence 44 4454 6666776654 222 22222222 5689999999988765433 5899998776322 111 1
Q ss_pred ccceeEEEEEEcCcEEEEecC---CCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 258 AHEMAVLCVCLVGEFLCSGSA---DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
.....-..++++|++++..+. .+.|.+++..... ...+..+.+.+...+|+|
T Consensus 378 ~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~----~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 378 GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV----RQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc----eEEcccCCCCCCCCccCC
Confidence 112223467778887776654 3467788875432 233344556677788887
No 232
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=4.9e-12 Score=96.46 Aligned_cols=262 Identities=15% Similarity=0.200 Sum_probs=161.3
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
..-|.++.|+ |++|++|..+|.|.++.-+......+.....+...... -.|+. -..-...|..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-------FDYLk--------SleieEKink 89 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-------FDYLK--------SLEIEEKINK 89 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-------cchhh--------hhhhhhhhhh
Confidence 4568888898 99999999999999997654432122222222110000 00000 0023456788
Q ss_pred EEEeC----CeEEEecCCCcEEEEEcCCceee-----------------------------------eec-cccCcceEE
Q 018591 134 LTVYN----GLIYSGSWDKTLKVWRVADLKCL-----------------------------------ESI-KAHDDAVNG 173 (353)
Q Consensus 134 ~~~~~----~~l~~~~~dg~v~iwd~~~~~~~-----------------------------------~~~-~~~~~~v~~ 173 (353)
+.|.+ ..++..+.|.+|++|-+...... +.+ .+|.--|++
T Consensus 90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS 169 (433)
T ss_pred ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence 88876 67888889999999987532110 001 257778899
Q ss_pred EEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec---cCCceeeEEEEcCC-CCeEEeecCCCcEEEeecccccc
Q 018591 174 LVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG---HKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIV 248 (353)
Q Consensus 174 i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~ 248 (353)
|.+ ++...+....|=.|.+|+++-... ...+....+. .-..+|++..|+|. .+.++-.+..|+|++-|++....
T Consensus 170 IS~NsD~Et~lSADdLRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 170 ISVNSDKETFLSADDLRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeecCccceEeeccceeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 999 555555566788999999875431 1111111111 11235689999995 57788889999999999985421
Q ss_pred ceeeeee------------ccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCC-----------
Q 018591 249 RWKLACE------------TKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE----------- 303 (353)
Q Consensus 249 ~~~~~~~------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~----------- 303 (353)
....... +..--..|..+.+ +|+++++-.. -+|.+||+..... ++.+++-|.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~--pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK--PVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC--cceEEeehHhHHHHHHHHhh
Confidence 1111110 1111233444555 4899988655 5799999965443 233333332
Q ss_pred -cCe---EEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 304 -GPV---KCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 304 -~~v---~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
..| ..++|+-+ +.+++||+.....+++++..+.
T Consensus 326 nD~IfdKFec~~sg~----~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGN----DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccchhheeEEEEcCC----cceEecccccceEEEecCCCCc
Confidence 222 45678877 8899999999999999966553
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=2.1e-12 Score=96.05 Aligned_cols=126 Identities=15% Similarity=0.203 Sum_probs=89.2
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC---CC
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA---DK 280 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg 280 (353)
...+......+|..++|+|+++.+++ |..++.|.+||++. +....+.........++|+|++|++++. .|
T Consensus 51 ~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G 125 (194)
T PF08662_consen 51 VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----KKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNG 125 (194)
T ss_pred cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----cEeEeecCCCceEEEECCCCCEEEEEEccCCCc
Confidence 33444333334699999999998755 44677999999973 3444444444444567778999998874 46
Q ss_pred eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEcCCCCCccccc
Q 018591 281 SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 281 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~ 346 (353)
.|.+||.++.+ .+.... | ..++.++|+|+ |++|++++. |+.++||++. ++.+....
T Consensus 126 ~l~~wd~~~~~---~i~~~~-~-~~~t~~~WsPd----Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 126 DLEFWDVRKKK---KISTFE-H-SDATDVEWSPD----GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEECCCCE---Eeeccc-c-CcEEEEEEcCC----CCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 79999999766 454433 3 34789999999 999999874 7889999985 55554433
No 234
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=4.7e-10 Score=89.93 Aligned_cols=275 Identities=10% Similarity=0.044 Sum_probs=164.2
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEec----------CCCcEEEEEcccCccceeEEeeccccccceee
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAH----------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG 105 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
++|.+.|..+++.+..+.....+-..++.+++.++.+. .+..|.+||..+.+ .+..++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-----~~~~i~~p~~p-- 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-----PIADIELPEGP-- 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-----EEeEEccCCCc--
Confidence 89999999999999888654333332555577766554 47899999999887 33333321100
Q ss_pred eecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-C-CCcEEEEEcCCceeeeeccccCcceEEEEEeCCeE
Q 018591 106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-W-DKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIV 181 (353)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l 181 (353)
+. .....-..+.+++ +++++.. . +..|.+.|+.+++.+.++.-. +...-...++...
T Consensus 100 ----------------~~--~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~ 160 (352)
T TIGR02658 100 ----------------RF--LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTF 160 (352)
T ss_pred ----------------hh--hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCcc
Confidence 00 0011223456666 5666554 3 789999999999999888642 2222222344444
Q ss_pred EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceee-eeec---
Q 018591 182 YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKL-ACET--- 256 (353)
Q Consensus 182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~--- 256 (353)
.+-+.||......+.+...........+..........-.|.+ +++++++... |.|.+.|+......... ...+
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA 239 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccc
Confidence 4556677766655544331111111111111111101113455 8888888777 99999996553221111 1111
Q ss_pred ------cccceeEEEEEEcCcEEEEec----------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591 257 ------KAHEMAVLCVCLVGEFLCSGS----------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF 320 (353)
Q Consensus 257 ------~~~~~~v~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 320 (353)
........++.++++.+++.. ..+.|.++|..+.+. +..+.- ...+..++++|| ++
T Consensus 240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv---i~~i~v-G~~~~~iavS~D----gk 311 (352)
T TIGR02658 240 EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR---LRKIEL-GHEIDSINVSQD----AK 311 (352)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE---EEEEeC-CCceeeEEECCC----CC
Confidence 111112367777777777642 235799999998874 333331 347899999999 77
Q ss_pred -EEEEcc-CCCeEEEEEcCCCCCcccc
Q 018591 321 -LLYSGS-LDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 321 -~l~s~~-~dg~i~iw~~~~~~~~~~~ 345 (353)
+|++.. .++.|.+.|..+++.+.+.
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777665 6788999999999888776
No 235
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.3e-13 Score=110.36 Aligned_cols=283 Identities=14% Similarity=0.192 Sum_probs=181.5
Q ss_pred eeeeeCccCceEEEEE-C-CcEEEEEeCCCcEEEEeCCC-------ceeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591 9 LAVLSGHVGSVSSLAL-C-GEFILSASQGKDIIVWQQPD-------LRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR 79 (353)
Q Consensus 9 ~~~l~~h~~~v~~~~~-~-~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 79 (353)
+..+.||+..|..++- + .+-+++++.|.+|++|.+.. ..+..++..|..+|..+.|-.+.-..++.||.|.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 4578899999999976 4 78899999999999999753 3366778899999999999744334445678999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEe-cCCCcEEEEEcCC
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSG-SWDKTLKVWRVAD 157 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~-~~dg~v~iwd~~~ 157 (353)
+||.--+. .+....... -.+..+.|.|+.--. ..+++| +...+|+++|.+.
T Consensus 808 lWDPFigr-----~Laq~~dap----------------------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 808 LWDPFIGR-----LLAQMEDAP----------------------KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred eecccccc-----hhHhhhcCc----------------------ccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 99975544 111111000 003334555554322 444444 7889999999998
Q ss_pred ceeeeecc-----ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 158 LKCLESIK-----AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 158 ~~~~~~~~-----~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
.+-..+++ +....+.+++. .++.++++-.+|.|.+.|.++++ .+..++.-.-.. ..++ .|..+.++
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~-----vINswrpmecdl-lqla-apsdq~L~ 933 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK-----VINSWRPMECDL-LQLA-APSDQALA 933 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc-----eeccCCcccchh-hhhc-CchhHHHH
Confidence 77665553 33456788888 56699999999999999999997 444433322211 1122 24556677
Q ss_pred eecCCCcEEE-eeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc-ceEEeccc--cCCCcCe
Q 018591 231 GGGSDGFVMG-WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG-KLCRVGAI--TGHEGPV 306 (353)
Q Consensus 231 ~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~--~~h~~~v 306 (353)
....|..+.+ |-...+. .....+....+..-+..-|.-|++....+.+.+|.-...- ....+.++ ....+..
T Consensus 934 ~saldHslaVnWhaldgi----mh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~l 1009 (1034)
T KOG4190|consen 934 QSALDHSLAVNWHALDGI----MHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTL 1009 (1034)
T ss_pred hhcccceeEeeehhcCCe----eeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCcc
Confidence 7777888887 7665552 2222222222222222336677777777788888532110 00011112 2345678
Q ss_pred EEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591 307 KCLQASPNAVGGGFLLYSGSLDKSLRV 333 (353)
Q Consensus 307 ~~~~~~~~~~~~~~~l~s~~~dg~i~i 333 (353)
++++..|- +.-++.|.+.|.|.+
T Consensus 1010 Tala~LPL----N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1010 TALAPLPL----NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ceeeeccc----cchhhccCCCCceee
Confidence 89999998 778888888888875
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.4e-11 Score=102.02 Aligned_cols=194 Identities=14% Similarity=0.054 Sum_probs=119.7
Q ss_pred ecCCceEEEEEeC--CeEEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCC--cEEEEeC
Q 018591 126 EHADSISCLTVYN--GLIYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADG--KIKAWGK 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg--~i~iwd~ 195 (353)
.+...+.+..|+| +.|+..+. +..|++||+.+++... +....+...+..|++ + .+ ++.+.+| .|++||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 4666788899998 66776653 3469999998776543 223344455678843 3 44 4555555 5999999
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCc--EEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGF--VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
.+++ . ..+..+... ....+|+|||+.++..+ .+|. |.++++..+.. +.. ...+......+++++|++
T Consensus 280 ~~g~-----~-~~lt~~~~~-~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~l-t~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 280 GSRQ-----L-TRLTNHFGI-DTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERL-TFQGNYNARASVSPDGKK 349 (433)
T ss_pred CCCC-----e-EECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe-ecCCCCccCEEECCCCCE
Confidence 8775 2 233333332 26789999999887665 3454 55566655421 111 122222223567778988
Q ss_pred EEEecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC---CeEEEEEcCCC
Q 018591 273 LCSGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD---KSLRVWWVSKQ 339 (353)
Q Consensus 273 l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~ 339 (353)
|+..+.++ .|.+||+.+++.. . +. +........|+|| |++++..+.+ +.|.++++...
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~-~---Lt-~~~~~~~p~~spd----G~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVR-T---LT-PGSLDESPSFAPN----GSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeE-E---CC-CCCCCCCceECCC----CCEEEEEEecCCceEEEEEECCCC
Confidence 87655432 6999999876521 2 22 2223456789999 8877766653 45777877543
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.2e-11 Score=102.78 Aligned_cols=229 Identities=13% Similarity=0.048 Sum_probs=135.0
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
..|.++|. ++.....+..+...+.+..|+ ++.|+..+.+ ..|.+||+.+++... +.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~--------------- 236 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---VA--------------- 236 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---ee---------------
Confidence 46777786 444444555667788888887 7777766532 359999998775211 11
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCcEEEEEc--CCceeeeeccccCcceEEEEEeC-C-eEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKTLKVWRV--ADLKCLESIKAHDDAVNGLVASK-G-IVYS 183 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~ 183 (353)
...+.+....|+| +.++ +.+.+|...+|.+ ..+. ...+..+........|++ + .++.
T Consensus 237 ---------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f 300 (427)
T PRK02889 237 ---------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYF 300 (427)
T ss_pred ---------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEE
Confidence 1223455788988 4554 5677887666654 4333 445555555566778843 3 5554
Q ss_pred Ec-CCCcEEEEeCC--CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeecc
Q 018591 184 AS-ADGKIKAWGKE--LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 184 ~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~ 257 (353)
.+ .+|...+|.+. .+. .. .+....... ....|+|+|++++..+.++ .|.+||+.++... .. ..
T Consensus 301 ~s~~~g~~~Iy~~~~~~g~-----~~-~lt~~g~~~-~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~l--t~ 369 (427)
T PRK02889 301 TSDRGGAPQIYRMPASGGA-----AQ-RVTFTGSYN-TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--AL--TD 369 (427)
T ss_pred EecCCCCcEEEEEECCCCc-----eE-EEecCCCCc-CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--Ec--cC
Confidence 44 45666666553 333 11 111112222 4678999999998766554 5999999876321 11 11
Q ss_pred ccceeEEEEEEcCcEEEEecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 258 AHEMAVLCVCLVGEFLCSGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
........++++|+.|+..+.++ .+++.+.. ++. ...+..+.+.+...+|+|-
T Consensus 370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~---~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRI---KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCc---eEEeecCCCCCCCCccCCC
Confidence 22233456778888877766443 35555663 332 2233446677888888874
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=3.6e-11 Score=89.86 Aligned_cols=267 Identities=13% Similarity=0.125 Sum_probs=167.9
Q ss_pred CCcEEEEeCCCceeeE--Ee-ccCceeeEEEEEe-----CC-EEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591 35 GKDIIVWQQPDLRMFT--KF-GHGDGSVKAVVTV-----GN-KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG 105 (353)
Q Consensus 35 dg~v~vwd~~~~~~~~--~~-~~~~~~v~~~~~~-----~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
-|.+.++++.+.+... ++ ......+..+.|. +. .++-+..+|.|.++........ ..+..+....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~k---- 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--VHLRGLSSKK---- 118 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee--eeecccchhh----
Confidence 4678899987765543 11 1123456666665 44 4666778889999887654311 0111111000
Q ss_pred eecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee--eeeccccCcceEEEEE---eC
Q 018591 106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVA---SK 178 (353)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~---~~ 178 (353)
-......++.|++ ..++++..+|.+.+-+...... ++.++.|..+.+...| .+
T Consensus 119 --------------------i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 119 --------------------ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred --------------------hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence 0011234666776 7788999999999766555444 4478999999999988 67
Q ss_pred CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591 179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 179 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 257 (353)
+.+++|+.|+.+..||++..+. -.....+.|...+ .++.-+| .+.++++|+.|..|++||.++.. ++.....
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~---~i~~n~kvH~~GV-~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~---kPl~~~~ 251 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKT---FIWHNSKVHTSGV-VSIYSSPPKPTYIATGSYDECIRVLDTRNMG---KPLFKAK 251 (339)
T ss_pred ceEEecCCCceEEEEEecCCcc---eeeecceeeecce-EEEecCCCCCceEEEeccccceeeeehhccc---CccccCc
Confidence 7999999999999999994431 1223345566665 7777765 57899999999999999999642 2222111
Q ss_pred ccceeEEEEEEc----CcEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCe
Q 018591 258 AHEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKS 330 (353)
Q Consensus 258 ~~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~ 330 (353)
-.+.|..+... +..|+++-.+| .+|-+.+..... ..+...+.|.+-...-.|... ...|+|++ .|..
T Consensus 252 -v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~----~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 252 -VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK----DSFLATCSFYDKK 325 (339)
T ss_pred -cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc----cceeeeeeccccc
Confidence 22556666554 34455555555 666666543221 133445677777777777544 56788865 4777
Q ss_pred EE-EEEcCCCC
Q 018591 331 LR-VWWVSKQS 340 (353)
Q Consensus 331 i~-iw~~~~~~ 340 (353)
++ +|-.-++.
T Consensus 326 ~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 326 IRQLWLHITGE 336 (339)
T ss_pred eeeeeeeccCC
Confidence 55 88655543
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.2e-11 Score=100.62 Aligned_cols=228 Identities=7% Similarity=-0.069 Sum_probs=138.8
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC---CCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
..|.+||.. +...+.+..|...+....|+ ++.|+..+. +..|.+||+.++....
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 378899974 44445566677789999987 777776653 4689999998765211
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCc--EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKT--LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYS 183 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~ 183 (353)
+..+.+.+....|+| +.| ++.+.++. |++||+.+++. ..+..+........|+++ .++.
T Consensus 241 -------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f 306 (435)
T PRK05137 241 -------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVF 306 (435)
T ss_pred -------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEE
Confidence 113445566788888 444 45555554 77789877655 445555556667788433 5555
Q ss_pred Ec-CCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeecc
Q 018591 184 AS-ADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 184 ~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~ 257 (353)
.+ .+| .|.++|+..+. .. .+....... ....|+|+|+.++....+ ..|.+||+..+.. .... .
T Consensus 307 ~s~~~g~~~Iy~~d~~g~~-----~~-~lt~~~~~~-~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt--~ 375 (435)
T PRK05137 307 ESDRSGSPQLYVMNADGSN-----PR-RISFGGGRY-STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT--S 375 (435)
T ss_pred EECCCCCCeEEEEECCCCC-----eE-EeecCCCcc-cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc--C
Confidence 44 333 58888877664 22 222222222 668899999998876543 3577888755421 1111 1
Q ss_pred ccceeEEEEEEcCcEEEEecCC------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 258 AHEMAVLCVCLVGEFLCSGSAD------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
........++++|+.|+..+.+ ..++++|+..+.. .. +. ..+.+...+|+|-
T Consensus 376 ~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~---l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 376 GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-RE---VP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EE---cc-CCCCccCcccCCC
Confidence 2223345677788877654432 3688888866442 22 22 2344667778774
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=4e-09 Score=86.65 Aligned_cols=274 Identities=14% Similarity=0.202 Sum_probs=160.7
Q ss_pred EEEEeCC----CcEEEEeC--CCceee--EEeccCceeeEEEEEe--CCEEEEecC----CCcEEEEEcccCccceeEEe
Q 018591 29 ILSASQG----KDIIVWQQ--PDLRMF--TKFGHGDGSVKAVVTV--GNKVFTAHQ----DSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 29 l~s~~~d----g~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~~----dg~i~~w~~~~~~~~~~~~~ 94 (353)
++.|+.. +.|.+|++ +++++. ..... ......++++ +++|+++.. +|.|..|++.... .....+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEe
Confidence 4556665 68999987 455443 22221 2233445564 788888766 5789999987752 111222
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCC-ceeeee---cc--
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVAD-LKCLES---IK-- 165 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~-~~~~~~---~~-- 165 (353)
...+ .....-..+++++ ++|+++ ..+|.|.++++.. +..... +.
T Consensus 80 ~~~~---------------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~ 132 (345)
T PF10282_consen 80 NSVP---------------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE 132 (345)
T ss_dssp EEEE---------------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE
T ss_pred eeec---------------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC
Confidence 2111 1223445677877 555555 4689999999976 333222 11
Q ss_pred --------ccCcceEEEEEeCC--eEEE-EcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEee-
Q 018591 166 --------AHDDAVNGLVASKG--IVYS-ASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGG- 232 (353)
Q Consensus 166 --------~~~~~v~~i~~~~~--~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~- 232 (353)
.......++.+.++ ++++ .-....|.+|++......... ...+. .....+ ..++|+|+++++++.
T Consensus 133 g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GP-Rh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 133 GSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGP-RHLAFSPDGKYAYVVN 210 (345)
T ss_dssp EEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSE-EEEEE-TTSSEEEEEE
T ss_pred CCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCC-cEEEEcCCcCEEEEec
Confidence 12345677888433 4444 444568999999766521111 22222 233444 899999999987655
Q ss_pred cCCCcEEEeeccccccceeeeeecc-------cc-ceeEEEEEEcCcEEEEec-CCCeEEEEecC-CCcceEEeccccCC
Q 018591 233 GSDGFVMGWEGNVEIVRWKLACETK-------AH-EMAVLCVCLVGEFLCSGS-ADKSIGIWKRE-AFGKLCRVGAITGH 302 (353)
Q Consensus 233 ~~dg~i~i~d~~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~-~~~~~~~~~~~~~h 302 (353)
-.++.|.++++.......+...... +. ...-..++++|++|+++. .++.|.+|+++ ....+..+......
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 4577899999883222222222111 11 234456777898877655 57789999994 32344455555444
Q ss_pred CcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcC
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVS 337 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 337 (353)
....+.++++|+ |++|+++. .++.|.+|++.
T Consensus 291 G~~Pr~~~~s~~----g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 291 GKFPRHFAFSPD----GRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSEEEEEE-TT----SSEEEEEETTTTEEEEEEEE
T ss_pred CCCccEEEEeCC----CCEEEEEecCCCeEEEEEEe
Confidence 455899999999 88888776 56789999875
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3.7e-11 Score=97.88 Aligned_cols=167 Identities=17% Similarity=0.179 Sum_probs=120.5
Q ss_pred EEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591 172 NGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR 249 (353)
Q Consensus 172 ~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 249 (353)
..+++ ...-|+.++....|+-++++.+. .+..+....+.. +++..++...+|++|+.+|.|..||.+.....
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGr-----fL~P~~~~~~~l-N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-----FLNPFETDSGEL-NVVSINEEHGLLACGTEDGVVEFWDPRDKSRV 210 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccc-----cccccccccccc-eeeeecCccceEEecccCceEEEecchhhhhh
Confidence 34555 22245555555679999999998 666666665555 99999999999999999999999999886433
Q ss_pred eeeee--eccccc-----eeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591 250 WKLAC--ETKAHE-----MAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF 320 (353)
Q Consensus 250 ~~~~~--~~~~~~-----~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 320 (353)
..+.. ....|. ..|+++.|+ |-.+++|..+|.+.|||+++.+. .+..-.+..-+|..+.|.+.. ++.
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~~~--~q~ 286 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQDTD--QQN 286 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccccC--CCc
Confidence 22221 222232 348888885 67899999999999999998764 232334456689999998862 255
Q ss_pred EEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591 321 LLYSGSLDKSLRVWWVSKQSSTSDSEEKS 349 (353)
Q Consensus 321 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 349 (353)
.++|. ....++|||-.+++.....+...
T Consensus 287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~ 314 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWDECTGKPMASIEPTS 314 (703)
T ss_pred eEEec-chHHhhhcccccCCceeeccccC
Confidence 66665 35589999999999888776543
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=5.4e-10 Score=91.65 Aligned_cols=280 Identities=9% Similarity=0.055 Sum_probs=153.8
Q ss_pred CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec-CCC
Q 018591 2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH-QDS 76 (353)
Q Consensus 2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg 76 (353)
...+.+.+..+..+...-..+.|+ |+++++++.||.|.++|+.+++.+.++..... ...++++ |++++++. .++
T Consensus 22 D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 22 DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETT
T ss_pred ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCC
Confidence 345678888888665544456675 89999999999999999999999999977544 4556665 88887664 688
Q ss_pred cEEEEEcccCccceeEEeec---------------cccccceeeeecccceeEeec--c--cceeeeeecCCceEEEEEe
Q 018591 77 RIRVWKVSRSSENVFRLVDT---------------LPTTKDYLGKFMKQSNYVQTR--R--HHKRLWIEHADSISCLTVY 137 (353)
Q Consensus 77 ~i~~w~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~i~~~~~~ 137 (353)
.+.++|.++.+....-.... .+....++............. . .................|+
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d 180 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD 180 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC
Confidence 99999998866221111111 111111111111111111110 0 0111122333445567788
Q ss_pred C--CeEE-EecCCCcEEEEEcCCceeeeecc----ccCcceEEEE-------E----eCCeEEEEcCCCcEEEEeCCCCC
Q 018591 138 N--GLIY-SGSWDKTLKVWRVADLKCLESIK----AHDDAVNGLV-------A----SKGIVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 138 ~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~i~-------~----~~~~l~~~~~dg~i~iwd~~~~~ 199 (353)
+ ++++ +...++.|-++|..+++.+..+. .|..+...+- | .....++.-....+.+||....+
T Consensus 181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 7 4544 45667899999999888776542 2333333322 2 11122222233455567776665
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEee----cCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE--cCcE
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG----GSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL--VGEF 272 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~ 272 (353)
..+.+...... .-+..+|+++++.+. ...+.|.++|.++. +....+.. ....+..+.+ +|+.
T Consensus 261 -----vv~~I~~~G~g--lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl----~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 261 -----VVKTIPTQGGG--LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL----KVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp -----EEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGT----EEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred -----EEEEEECCCCc--ceeecCCCCccEEeeccCCCCCceEEEEECcCc----ceeEEEeccCCCcEeccEECCCCCE
Confidence 66666654433 678889999999988 45689999999987 33333322 2223555555 4776
Q ss_pred EEEec--CCCeEEEEecCCCcce
Q 018591 273 LCSGS--ADKSIGIWKREAFGKL 293 (353)
Q Consensus 273 l~~~~--~dg~i~iw~~~~~~~~ 293 (353)
+..+. .++.|.+||..+.+..
T Consensus 330 v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp EEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEECCCcEEE
Confidence 55444 3447999999998743
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.45 E-value=3.8e-11 Score=91.23 Aligned_cols=276 Identities=14% Similarity=0.193 Sum_probs=170.2
Q ss_pred EEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCcEEEEEcccCccceeEEeecc
Q 018591 21 SLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSRIRVWKVSRSSENVFRLVDTL 97 (353)
Q Consensus 21 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 97 (353)
++.-+|+++|+++.- .+.|-|.++.+..+.+.. -..|.-+.|. . -.|.....|+.|.+|++...+- .
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----~--- 84 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----Y--- 84 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----E---
Confidence 333359999999875 888889888776655543 3456667776 2 3455678899999999987651 1
Q ss_pred ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEE
Q 018591 98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174 (353)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i 174 (353)
..+......+.+++|+| ..|.+...+-.|.+|.+.+.+.... +-....+..+
T Consensus 85 ------------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~ 139 (447)
T KOG4497|consen 85 ------------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGY 139 (447)
T ss_pred ------------------------EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeE
Confidence 11114567889999999 5677888899999999987654432 2223344556
Q ss_pred EEe-CC-eEEEEcC------------------------------------CCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591 175 VAS-KG-IVYSASA------------------------------------DGKIKAWGKELGKSHCHSLKGILEGHKDVS 216 (353)
Q Consensus 175 ~~~-~~-~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (353)
+|+ ++ +.+.++. +..+.+||.--.- ..+.-+.+-.
T Consensus 140 ~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-------kv~aYe~~lG 212 (447)
T KOG4497|consen 140 AFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-------KVYAYERGLG 212 (447)
T ss_pred EECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh-------eeeeeeeccc
Confidence 662 22 2222221 2234455432111 1222233333
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEEeecccccc-------------------------------------------c----
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV-------------------------------------------R---- 249 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------------------------~---- 249 (353)
+..++|+|.++++++|+.|+.+++.+--+-+. .
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s 292 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES 292 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence 58899999999999999999988753211000 0
Q ss_pred ---------------eeeeeecccccee--EEEEEEcCcEEEEecC--CCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591 250 ---------------WKLACETKAHEMA--VLCVCLVGEFLCSGSA--DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ 310 (353)
Q Consensus 250 ---------------~~~~~~~~~~~~~--v~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~ 310 (353)
.++...+...... ..+++.|..++++-.. -+.+-+||++..+ +...-....+|.+..
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~piraf~ 368 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKHPIRAFE 368 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhccceeEEE
Confidence 0000000111111 2344445667776543 4679999998765 333334567899999
Q ss_pred eecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
|.|. ...|+.+.....+++|...-...+....
T Consensus 369 WdP~----~prL~vctg~srLY~W~psg~~~V~vP~ 400 (447)
T KOG4497|consen 369 WDPG----RPRLVVCTGKSRLYFWAPSGPRVVGVPK 400 (447)
T ss_pred eCCC----CceEEEEcCCceEEEEcCCCceEEecCC
Confidence 9998 6677777777789999887665554433
No 244
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.8e-11 Score=94.03 Aligned_cols=198 Identities=13% Similarity=0.151 Sum_probs=132.5
Q ss_pred CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc-cCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcc
Q 018591 128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA-HDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSH 201 (353)
Q Consensus 128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 201 (353)
...+..++|++ ..++++..|-.|++||-.. ++...++. ....|++++|.| ..++.|+. +.|.+|.....-..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 34577889998 7888999999999999765 44444432 357899999943 37777776 45999976432110
Q ss_pred -------cccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE
Q 018591 202 -------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL 273 (353)
Q Consensus 202 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 273 (353)
.......++.....+|+++.|.+||..+++++. |..|.|||..++.... .............++|++.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--ccccCCCceeeEEEcCCCCEE
Confidence 111223344444456799999999999988764 6789999999884322 222333444567888899999
Q ss_pred EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
+++.-|+..++|+...... ... ..--.+.|....|+|+ |.+|+.+... .=++|.+.
T Consensus 254 faAt~davfrlw~e~q~wt--~er-w~lgsgrvqtacWspc----GsfLLf~~sg-sp~lysl~ 309 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWT--KER-WILGSGRVQTACWSPC----GSFLLFACSG-SPRLYSLT 309 (445)
T ss_pred EEecccceeeeehhcccce--ecc-eeccCCceeeeeecCC----CCEEEEEEcC-CceEEEEe
Confidence 9999999999996543221 111 1123458999999999 6665544322 23455544
No 245
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.7e-10 Score=96.23 Aligned_cols=194 Identities=10% Similarity=-0.013 Sum_probs=117.7
Q ss_pred ecCCceEEEEEeC--CeEEEec---CCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCC--cEEEEeC
Q 018591 126 EHADSISCLTVYN--GLIYSGS---WDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADG--KIKAWGK 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg--~i~iwd~ 195 (353)
.+...+....|+| +.|+..+ .+..|.+||+.+++..... ...+.+....|+++ .|+ +.+.+| .|.+||+
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 4556788999999 5666543 3457999999887543322 22333456788443 454 334455 5889999
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEe--eccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGW--EGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
.+++ .... ..+... +....|+|||+.|+..+. ++...+| |+..+.. ... ...........++++|++
T Consensus 275 ~tg~-----~~~l-t~~~~~-~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~l-t~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 275 ASGQ-----IRQV-TDGRSN-NTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRI-TWEGSQNQDADVSSDGKF 344 (429)
T ss_pred CCCC-----EEEc-cCCCCC-cCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEe-ecCCCCccCEEECCCCCE
Confidence 8775 3322 222223 378999999998876654 3444555 5554421 111 122222234567788888
Q ss_pred EEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCe---EEEEEcCCC
Q 018591 273 LCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKS---LRVWWVSKQ 339 (353)
Q Consensus 273 l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~---i~iw~~~~~ 339 (353)
|+..+.+ ..|.+||+.+++. ..+.. . .......|+|| |++|+.++.++. +.++++...
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~--~--~~~~~p~~SpD----G~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGV-QVLTD--T--FLDETPSIAPN----GTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEeCC--C--CCCCCceECCC----CCEEEEEEcCCCceEEEEEECCCC
Confidence 8765543 3588899987652 22221 1 12346789999 999998888764 677777533
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.2e-10 Score=97.32 Aligned_cols=196 Identities=14% Similarity=0.034 Sum_probs=122.3
Q ss_pred ecCCceEEEEEeC--CeEEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCCc--EEEEeC
Q 018591 126 EHADSISCLTVYN--GLIYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADGK--IKAWGK 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg~--i~iwd~ 195 (353)
.|...+.+..|+| +.|+..+. +..|++||+.+++.. .+..+.+.+....|++ + .+ ++.+.++. |.+||+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 5777899999999 56666543 468999999887653 3444566677888843 3 44 45565655 777788
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
.++. . ..+..+... .....|+|||+.++..+. +| .|+++|+..+.. ..... .........++++|+.
T Consensus 278 ~~~~-----~-~~Lt~~~~~-~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~--~~lt~-~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 278 RSGT-----T-TRLTDSPAI-DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP--RRISF-GGGRYSTPVWSPRGDL 347 (435)
T ss_pred CCCc-----e-EEccCCCCc-cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe--EEeec-CCCcccCeEECCCCCE
Confidence 8765 2 233333333 367899999998876653 33 577778766522 11111 1111223457778888
Q ss_pred EEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC------CeEEEEEcCCCCC
Q 018591 273 LCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD------KSLRVWWVSKQSS 341 (353)
Q Consensus 273 l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~~~~ 341 (353)
|+....+ ..|.+||+..+.. ..+ . ....+....|+|| |+.|+..+.+ ..+.++++..+..
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~-~~l---t-~~~~~~~p~~spD----G~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGE-RIL---T-SGFLVEGPTWAPN----GRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCce-Eec---c-CCCCCCCCeECCC----CCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 8776543 3688888765432 122 1 1234678899999 8877665442 2577778765543
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.9e-12 Score=118.15 Aligned_cols=184 Identities=16% Similarity=0.273 Sum_probs=141.4
Q ss_pred eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
++.|-..|.++.-+ ..+.+||+.||.|++|....++.+..+.. ....|+.+.|+ |+.+..+..||.+.+|.+...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 33444556666554 67899999999999999988888777632 24788888887 899999999999999998732
Q ss_pred ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec---CCCcEEEEEcCC---cee
Q 018591 87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS---WDKTLKVWRVAD---LKC 160 (353)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~dg~v~iwd~~~---~~~ 160 (353)
. ...+..|......+.|-...+++++ .++.+.+||..- ..+
T Consensus 2284 ~---------------------------------~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2284 P---------------------------------YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred c---------------------------------eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence 2 2223368888888888887777764 568899999642 223
Q ss_pred eeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591 161 LESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV 238 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 238 (353)
+. ..|.+.++++++-|+ .+++|+.+|.|++||++..+ +...++. +. ...++++|+..|.+
T Consensus 2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq-----l~h~~~~----------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-----LRHTFQA----------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH-----HHHHhhh----------hh-hhheeeccCcccce
Confidence 34 689999999999443 89999999999999999876 4444433 23 45689999999999
Q ss_pred EEeecccc
Q 018591 239 MGWEGNVE 246 (353)
Q Consensus 239 ~i~d~~~~ 246 (353)
+||++...
T Consensus 2393 kIw~~s~~ 2400 (2439)
T KOG1064|consen 2393 KIWRLSEF 2400 (2439)
T ss_pred EEEEcccc
Confidence 99999875
No 248
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.42 E-value=7.2e-10 Score=93.01 Aligned_cols=266 Identities=12% Similarity=0.060 Sum_probs=161.8
Q ss_pred EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591 22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK 101 (353)
Q Consensus 22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 101 (353)
+..++..++.++.+|.+..+|.++|+.+...........+....++.++.+..+|.+..+|.++++..-..... .+.
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~-- 192 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD-VPS-- 192 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC-CCc--
Confidence 34456677888899999999999999988776543322223344778888888999999999888721111000 000
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCc----c-------
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDD----A------- 170 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~------- 170 (353)
....+...++ ...+.++.++.+|.+..+|..+++.+...+.... .
T Consensus 193 --------------------~~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 193 --------------------LTLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred --------------------ccccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence 0000111111 1235677788899999999998887665431100 0
Q ss_pred eEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce
Q 018591 171 VNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW 250 (353)
Q Consensus 171 v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 250 (353)
...-...++.++.++.+|.+..+|..+++.. -... .... ..+. ..+..++.++.+|.+..+|..++...+
T Consensus 249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~-----W~~~--~~~~-~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIV-----WKRE--YGSV-NDFA--VDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred CCCcEEECCEEEEEEcCCeEEEEECCCCCEE-----Eeec--CCCc-cCcE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 0112235677888888999999999998722 1111 1111 1222 235678888899999999999886555
Q ss_pred eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE-EEeecCCCCCCeEEEEccCCC
Q 018591 251 KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC-LQASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~l~s~~~dg 329 (353)
....... ....+....+.+|+.++.+|.++..|..+++.... .+-....+.+ ..+. +..|+.++.||
T Consensus 319 ~~~~~~~---~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~---~~~~~~~~~s~P~~~------~~~l~v~t~~G 386 (394)
T PRK11138 319 SQSDLLH---RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQ---QKVDSSGFLSEPVVA------DDKLLIQARDG 386 (394)
T ss_pred cccccCC---CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEE---EEcCCCcceeCCEEE------CCEEEEEeCCc
Confidence 4321111 11111222467788899999999999999874332 2222222222 2222 45788889999
Q ss_pred eEEEEEc
Q 018591 330 SLRVWWV 336 (353)
Q Consensus 330 ~i~iw~~ 336 (353)
.|..++.
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 9988764
No 249
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.41 E-value=8.3e-10 Score=92.63 Aligned_cols=276 Identities=12% Similarity=0.063 Sum_probs=170.3
Q ss_pred EECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce----------ee-EEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591 23 ALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG----------SV-KAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 23 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~ 91 (353)
.+.+..++.++.+|.|.-+|.++|+.+........ .+ ..+...++.++.++.+|.+..+|.++++..-.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 44577888888899999999999998877643220 11 12344577888899999999999988863211
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecCCceE-EEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcc
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDA 170 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 170 (353)
... ...+. +.....+.++.++.++.+..+|..+++.+..+......
T Consensus 146 ~~~---------------------------------~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 146 TKV---------------------------------AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ccC---------------------------------CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 110 00111 11222467788888999999999999988776532111
Q ss_pred e-----EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcC--CCCeEEeecCCCcEEEee
Q 018591 171 V-----NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 171 v-----~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d 242 (353)
. .+-...++.++.++.+|.+..+|..+++...........+ ........+..+| .+..++.++.+|.+..+|
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 1 1112245677788889999999998887322111000000 0000000111122 245677777899999999
Q ss_pred ccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591 243 GNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL 322 (353)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l 322 (353)
..+++..|+... . ....+...+..++.++.+|.+..+|..+++.......+. + ....+.... +.+|
T Consensus 273 ~~tG~~~W~~~~--~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~-~~~~sp~v~------~g~l 338 (394)
T PRK11138 273 LRSGQIVWKREY--G----SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-H-RLLTAPVLY------NGYL 338 (394)
T ss_pred CCCCCEEEeecC--C----CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccC-C-CcccCCEEE------CCEE
Confidence 999866655421 1 111234457788888899999999999887433221111 1 112222222 3477
Q ss_pred EEccCCCeEEEEEcCCCCCcccc
Q 018591 323 YSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 323 ~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
+.++.||.|.+.|..+++.+.+.
T Consensus 339 ~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEeCCCEEEEEECCCCCEEEEE
Confidence 88899999999999998876554
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.2e-09 Score=84.59 Aligned_cols=298 Identities=9% Similarity=0.097 Sum_probs=173.9
Q ss_pred CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe-----cCC-----CcEEEEEc
Q 018591 17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA-----HQD-----SRIRVWKV 83 (353)
Q Consensus 17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-----~~d-----g~i~~w~~ 83 (353)
.+++..+++ +..++.-+.+..++|++..++..+.+.... .++++.|+ +++|.+- ..+ -.+++|++
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence 345566665 444444556679999999888655444432 78888887 6666541 122 34779999
Q ss_pred ccCccceeEEeecccc--------ccceeeeecccceeEeecc-cceeeeeecCCceEEEEEeC----CeEEE-----ec
Q 018591 84 SRSSENVFRLVDTLPT--------TKDYLGKFMKQSNYVQTRR-HHKRLWIEHADSISCLTVYN----GLIYS-----GS 145 (353)
Q Consensus 84 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~----~~l~~-----~~ 145 (353)
+++.. .......... ......+.....-...... .....-.-|...|+.+.++| ..+++ .+
T Consensus 113 et~~~-~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 113 ETGVQ-RSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred cccee-hhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 88431 1111111111 1111111111111111111 11111124667888888887 34443 35
Q ss_pred CCCcEEEEEcCCceeeeecc---ccCcceEEEEEeCC---eEEEEc--CC---------CcEEEEeCCCCCcccccceee
Q 018591 146 WDKTLKVWRVADLKCLESIK---AHDDAVNGLVASKG---IVYSAS--AD---------GKIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 146 ~dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~---~l~~~~--~d---------g~i~iwd~~~~~~~~~~~~~~ 208 (353)
.-+.|++|..........+. .....=..+.|+.. +|+.++ -| .++++.+++.. ...
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-------s~~ 264 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-------SVS 264 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-------eEE
Confidence 56789999876322211110 01111234555322 333332 22 46788887733 234
Q ss_pred eeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC---CCeEE
Q 018591 209 LEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA---DKSIG 283 (353)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg~i~ 283 (353)
.......+|.++.|+|+++.+++ |-.-..+.+||++.. .+..+........-+.+.|++++.++. -|.+.
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCCCCCccceEECCCCCEEEEeecCCCCCceE
Confidence 44444556799999999977654 556778999999875 555555555555666777998887765 47899
Q ss_pred EEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEcCC
Q 018591 284 IWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWVSK 338 (353)
Q Consensus 284 iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~ 338 (353)
+||+.+.+ ++..+..-. -+-..|+|| |++++|++. |+.++||+...
T Consensus 340 vwDv~n~K---~i~~~~a~~--tt~~eW~Pd----Ge~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNRK---LIAKFKAAN--TTVFEWSPD----GEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccchh---hccccccCC--ceEEEEcCC----CcEEEEEeccccEEecCCeEEEEecC
Confidence 99999866 565555433 455789999 999999875 78899999764
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.39 E-value=1.1e-09 Score=83.46 Aligned_cols=293 Identities=12% Similarity=0.126 Sum_probs=165.8
Q ss_pred CceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCcEEEEEcccCccce
Q 018591 17 GSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSRIRVWKVSRSSENV 90 (353)
Q Consensus 17 ~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~ 90 (353)
+.|.-+.|. --.|..+..|+.|.+|++...+-...+......+.+++|+ | ..|.+...|-.|.+|.+.+.....
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 456666674 3356667789999999999999999998889999999998 5 456677788899999998875211
Q ss_pred eEEe------eccccccceeeee-----------------------------------cccceeEeecc--cceeeeeec
Q 018591 91 FRLV------DTLPTTKDYLGKF-----------------------------------MKQSNYVQTRR--HHKRLWIEH 127 (353)
Q Consensus 91 ~~~~------~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~--~~~~~~~~~ 127 (353)
..-. -.+.....+.... .++++.+..-. .+..++.-|
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 1100 0111111111000 00011111100 011111122
Q ss_pred -CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcce--------------------EEEEEeCCeEEEE
Q 018591 128 -ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV--------------------NGLVASKGIVYSA 184 (353)
Q Consensus 128 -~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--------------------~~i~~~~~~l~~~ 184 (353)
.-.+..++|+| +.+++|+.|+.+++.+--+.+...++- |-..+ .++.|.+.
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~----- 282 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT----- 282 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcccccccCCC-----
Confidence 24566666666 666677777777777666666655541 21111 12222111
Q ss_pred cCCCcEEEEeCCCCCcc---c------ccceeeeeccCCceeeEEEEcCCCCeEEeecCC--CcEEEeeccccccceeee
Q 018591 185 SADGKIKAWGKELGKSH---C------HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD--GFVMGWEGNVEIVRWKLA 253 (353)
Q Consensus 185 ~~dg~i~iwd~~~~~~~---~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~ 253 (353)
|-...+|.......+ . .++...+....-. +.-++|++|..++++-... ..+.+||++..+ .
T Consensus 283 --~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g-~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l- 354 (447)
T KOG4497|consen 283 --DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG-AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----L- 354 (447)
T ss_pred --ccccCccccchhhhhhhhcceeeecccCCCCCCCcccc-cceeeecCCceEEeeecCCCCceEEEEechhhh----h-
Confidence 111112211100000 0 0011111122222 3779999999998886543 578999998762 2
Q ss_pred eeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 254 CETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 254 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
...-....+|.++.|+ ...|+.+.....+++|...... .+... +..-.|..+.|.-+ |..++-.+.|...
T Consensus 355 ~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~---~V~vP-~~GF~i~~l~W~~~----g~~i~l~~kDafc 426 (447)
T KOG4497|consen 355 HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR---VVGVP-KKGFNIQKLQWLQP----GEFIVLCGKDAFC 426 (447)
T ss_pred hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce---EEecC-CCCceeeeEEecCC----CcEEEEEcCCceE
Confidence 2222335577888887 3466666667779999987533 33322 22357999999998 9999999999643
No 252
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=5.1e-12 Score=105.87 Aligned_cols=285 Identities=17% Similarity=0.184 Sum_probs=179.0
Q ss_pred CceEEEEEC--CcEEEEEeCCCcEEEEeCCC-ceeeEEecc-CceeeEEEEEe-----CCEEEEecCCCcEEEEEcccCc
Q 018591 17 GSVSSLALC--GEFILSASQGKDIIVWQQPD-LRMFTKFGH-GDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~-~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
+++.++..+ |+-+|.++.-| +.+-|+.. +.+..-+.+ ..-.|....|+ ...+++.+.. .-.+|++....
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSS 102 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcCC
Confidence 456666664 88888888766 45556543 333332322 13345566666 3345555544 55689987655
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce-eeee
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK-CLES 163 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~-~~~~ 163 (353)
...... ++.+|...|+.+.|++ ..+++++.|-.+..||+++.. ++..
T Consensus 103 ~~aIef-----------------------------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 103 SNAIEF-----------------------------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ccceEE-----------------------------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 332222 2348999999999998 899999999999999998743 4444
Q ss_pred ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEE
Q 018591 164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMG 240 (353)
Q Consensus 164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 240 (353)
+..-...-..+.| .+..+++.+....|++||.+.+. .+...+++|...+ +.++|..- ...+.+.+.||+|+.
T Consensus 154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~s~K~~vs~v-n~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLCSLKGHVSSV-NSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred eecccccCceeeecccCcchhhhccCCceEEEeccCCC----cceEEecccceee-ehHHHhhhhhhhhcccCCCCceee
Confidence 4444455567777 33455556667889999999887 4667777776655 88888753 456889999999999
Q ss_pred eeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc-------ceEEeccccCCCcCeEEEEe
Q 018591 241 WEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG-------KLCRVGAITGHEGPVKCLQA 311 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~h~~~v~~~~~ 311 (353)
||.......++...+... ...--+..| .|.++.---.+..+.+++.++.. ...++..+.||...|....|
T Consensus 229 w~y~kSt~e~~~~vtt~~-piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVTTNF-PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred ecccccccccceeccccC-cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 998876433332222111 111111111 12222211112244444433221 23478889999999988777
Q ss_pred ecCCC------CCCeEEEEccCCCeEEEEEcCC
Q 018591 312 SPNAV------GGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 312 ~~~~~------~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
-.... ...-.|+|-+.|..+++|.+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 64321 1135799999999999998875
No 253
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.9e-10 Score=96.14 Aligned_cols=332 Identities=15% Similarity=0.168 Sum_probs=193.0
Q ss_pred CCCCceeeeeeCccCceEEEEEC--------------CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---
Q 018591 3 CKSHRSLAVLSGHVGSVSSLALC--------------GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--- 65 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~~--------------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--- 65 (353)
..+.|.++++.-|...|+.+.|. .-+||++...|.|.+||...+..+..+.+|..++..++|-
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence 45678899999999999999993 1267888888999999999999999999999999999995
Q ss_pred ---CCEEEEecCCCcEEEEEcccCccc--------eeEEeeccccccceeeeecccceeE----------eecccceeee
Q 018591 66 ---GNKVFTAHQDSRIRVWKVSRSSEN--------VFRLVDTLPTTKDYLGKFMKQSNYV----------QTRRHHKRLW 124 (353)
Q Consensus 66 ---~~~l~s~~~dg~i~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 124 (353)
...|++-....++.+|+.++++.. ...+...-|.....+......+..+ ....+..++-
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 256777777789999998887621 1111221121111111000000000 0000011111
Q ss_pred eecCC----------------c---------eEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-
Q 018591 125 IEHAD----------------S---------ISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA- 176 (353)
Q Consensus 125 ~~~~~----------------~---------i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~- 176 (353)
..|.. . ...++|+| +.++.......+.++|++-..++....-..+.+.-+.+
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 11111 0 01133444 23333334455666666555544444333333333333
Q ss_pred ---eCCeEEEEcCCCcEEEE------------------------------------------------------------
Q 018591 177 ---SKGIVYSASADGKIKAW------------------------------------------------------------ 193 (353)
Q Consensus 177 ---~~~~l~~~~~dg~i~iw------------------------------------------------------------ 193 (353)
..+.+++...||.+.+|
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 11245555555555555
Q ss_pred eCCCCCccccc------c--------------------eeeeeccCCceeeEEEE-----------cCCC-------CeE
Q 018591 194 GKELGKSHCHS------L--------------------KGILEGHKDVSLNSVVV-----------SDDG-------KWV 229 (353)
Q Consensus 194 d~~~~~~~~~~------~--------------------~~~~~~~~~~~v~~~~~-----------~~~~-------~~l 229 (353)
.+.+++..... . .....+|.... .+... .|.+ ..+
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs-~~~~~~p~p~~t~~~~~p~~n~~~~~~pLv 440 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGS-TCVRMRPMPELTKVENDPGGNTPAGTVPLV 440 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCc-eeeecccCcccceeecCCCCCccceeeeeE
Confidence 33322210000 0 00000111111 12111 1222 257
Q ss_pred EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEE----------ecCCCeEEEEecCCCcceEEecc
Q 018591 230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCS----------GSADKSIGIWKREAFGKLCRVGA 298 (353)
Q Consensus 230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~----------~~~dg~i~iw~~~~~~~~~~~~~ 298 (353)
+.|...|+|.++|+.++ .....+..|...|.++.|-|. .|++ |+.-+.+.+-|+++|-....-..
T Consensus 441 AvGT~sGTV~vvdvst~----~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTN----AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred EeecCCceEEEEEecch----hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence 88999999999999998 567778889999999999754 3333 33345678889998753322212
Q ss_pred ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
-+..+.+|+.+..+.. ++||+..-.|.-+.+||+++...+.
T Consensus 517 ~~~despI~~irvS~~----~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSS----GRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred CCCCcCcceeeeeccc----CceEEEEecccchHHHhhccchHHH
Confidence 2345679999999999 9999999999999999997665544
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=6e-12 Score=114.95 Aligned_cols=188 Identities=16% Similarity=0.248 Sum_probs=140.3
Q ss_pred CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591 55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS 132 (353)
Q Consensus 55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (353)
+-..|.++.-. ..+.++|+.||.+++|....++. +.+..+. +. ..|+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~--v~~~rt~----------------------------g~-s~vt 2255 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ--VVCFRTA----------------------------GN-SRVT 2255 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCe--EEEeecc----------------------------Cc-chhh
Confidence 34455555444 56889999999999999876651 1111111 23 6778
Q ss_pred EEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEc---CCCcEEEEeCCCCCccccccee
Q 018591 133 CLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSAS---ADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 133 ~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
.+.|+. +.+..+..||.+.+|... .++....+.|......+.|-...+++++ .++.+.+||..-... ...
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~----~s~ 2330 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPM----NSL 2330 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcc----cce
Confidence 888877 888889999999999986 6777788889999999998556666654 478899999764431 122
Q ss_pred eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~ 287 (353)
.-..|.+.. +++++-|..+.|++|+.+|.|++||++..+ +.+.+.. +. ...++++|+..|.++||++
T Consensus 2331 v~~~H~~ga-T~l~~~P~~qllisggr~G~v~l~D~rqrq----l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2331 VHTCHDGGA-TVLAYAPKHQLLISGGRKGEVCLFDIRQRQ----LRHTFQA-------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eeeecCCCc-eEEEEcCcceEEEecCCcCcEEEeehHHHH----HHHHhhh-------hh-hhheeeccCcccceEEEEc
Confidence 226777776 999999999999999999999999999873 3333322 22 3678999999999999999
Q ss_pred CCCc
Q 018591 288 EAFG 291 (353)
Q Consensus 288 ~~~~ 291 (353)
....
T Consensus 2398 s~~~ 2401 (2439)
T KOG1064|consen 2398 SEFG 2401 (2439)
T ss_pred cccc
Confidence 8765
No 255
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=1e-10 Score=87.03 Aligned_cols=128 Identities=15% Similarity=0.214 Sum_probs=86.3
Q ss_pred cEEEEEcCC-ceeeeeccc-cCcceEEEEEeCC--eE--EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591 149 TLKVWRVAD-LKCLESIKA-HDDAVNGLVASKG--IV--YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV 222 (353)
Q Consensus 149 ~v~iwd~~~-~~~~~~~~~-~~~~v~~i~~~~~--~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (353)
...+|.++. ......+.- ..++|.+++|+|+ .+ +.|..++.+.+||++.. ....+. .... +.+.|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~------~i~~~~--~~~~-n~i~w 108 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK------KIFSFG--TQPR-NTISW 108 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc------EeEeec--CCCc-eEEEE
Confidence 345555532 233444433 3457999999544 44 34456789999999733 333333 3333 88999
Q ss_pred cCCCCeEEeecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC------CCeEEEEecCC
Q 018591 223 SDDGKWVYGGGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA------DKSIGIWKREA 289 (353)
Q Consensus 223 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iw~~~~ 289 (353)
+|+|+++++++. .|.+.+||.+.. +.+...........+++|+|++++++.. |+.++||+...
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 999999999864 467999999976 4455554445556667778999998874 78899999863
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=3.7e-12 Score=103.50 Aligned_cols=248 Identities=14% Similarity=0.186 Sum_probs=156.6
Q ss_pred eEEeccCceeeEEEEE-e-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591 49 FTKFGHGDGSVKAVVT-V-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE 126 (353)
Q Consensus 49 ~~~~~~~~~~v~~~~~-~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
+..+.+|+..|.++.- + .+.+++++.|.+|++|.++......... ...-.+..
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------------------aCQfTY~a 782 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------------------ACQFTYQA 782 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------------------eeeeEhhh
Confidence 4566789988988754 3 7889999999999999997654211100 01223448
Q ss_pred cCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccc-----cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCC
Q 018591 127 HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA-----HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 127 ~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~ 199 (353)
|+.+|.++.|..+.-..++.||-|.+||.--++++..+.. ..+.|.++-- ... .++.++...+++++|.+..+
T Consensus 783 Hkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred ccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 9999999999884444556689999999877777664421 1233444433 222 34444788999999999877
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEE-EEEcCcEEEEecC
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLC-VCLVGEFLCSGSA 278 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~ 278 (353)
....-....-.+... .+.+++..+.|+.++++-.+|.|.+.|.+++. .+.....-.-.... .+|+.+.|+....
T Consensus 863 ~~~E~kVcna~~Pna-~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaapsdq~L~~sal 937 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNA-LTRAIAVADKGNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAAPSDQALAQSAL 937 (1034)
T ss_pred ceeeEEeccCCCCch-heeEEEeccCcchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcCchhHHHHhhcc
Confidence 221111111122323 34899999999999999999999999999983 33322222222222 2456778888888
Q ss_pred CCeEEE-EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 279 DKSIGI-WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 279 dg~i~i-w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
|.++.+ |...++.. ....+....+. .|.... |.-|+++.....+.+|.
T Consensus 938 dHslaVnWhaldgim---h~q~kpppepa---hflqsv---gpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 938 DHSLAVNWHALDGIM---HLQDKPPPEPA---HFLQSV---GPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cceeEeeehhcCCee---eeccCCCCcch---hhhhcc---CceeEEeccCcEEEEEe
Confidence 899988 87665431 11112111111 111110 56677777777777774
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=1.3e-10 Score=87.01 Aligned_cols=185 Identities=12% Similarity=0.086 Sum_probs=122.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCceee--EEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMF--TKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT 100 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 100 (353)
+..++++-.+|.+.+-+.....+. +.++.|.-.++...|+ ++.+++|+.|+.+..||++.+....+..
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n------- 205 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN------- 205 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec-------
Confidence 778999999999997765555444 4789999999999997 7899999999999999998443111110
Q ss_pred cceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE
Q 018591 101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA 176 (353)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~ 176 (353)
-.-|...|.+|.-+| .++++|+.|-.|++||.++ ++++..-. -.+.|+.+..
T Consensus 206 -----------------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~ 261 (339)
T KOG0280|consen 206 -----------------------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH 261 (339)
T ss_pred -----------------------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEe
Confidence 015888999999888 6999999999999999985 55555432 3588999988
Q ss_pred eCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEE-Eee
Q 018591 177 SKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVM-GWE 242 (353)
Q Consensus 177 ~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-i~d 242 (353)
.+. .++.++.-.-.++-+...+.............|.+.. ..-.|.....++++++ .|..++ +|-
T Consensus 262 ~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~-YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 262 HPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLC-YGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cchhhhHHHHHHHhcCceEEEecccccchheeeecccccccee-eccccccccceeeeeeccccceeeeee
Confidence 554 3344444445777777766532111223333343322 3333332334566643 344433 443
No 258
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=8.2e-10 Score=93.40 Aligned_cols=193 Identities=11% Similarity=-0.010 Sum_probs=115.7
Q ss_pred ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCCcEEEEeC--
Q 018591 126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADGKIKAWGK-- 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg~i~iwd~-- 195 (353)
.+...+.+..|+| +.|+..+.+ ..|.+||+.+++... +....+.+.+..|+++ .++ +.+.+|...+|.+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 4667788999998 566665532 359999998876543 2233455567888443 454 5677887666654
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 274 (353)
..+. ...+..+... .....|+|||+.++..+ .+|...+|.+.......... ...+.......++++|++|+
T Consensus 272 ~~~~------~~~lt~~~~~-~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 272 DGSG------LRRLTQSSGI-DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred CCCC------cEECCCCCCC-CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEE
Confidence 4333 2233333332 36788999999887654 35666777654221111111 12222222346778899988
Q ss_pred EecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEc
Q 018591 275 SGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWV 336 (353)
Q Consensus 275 ~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~ 336 (353)
..+.++ .|.+||+.+++.. .+ .. ........|+|+ ++.|+.++.++ .+.+-++
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~-~l---t~-~~~~~~p~~spd----g~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVT-AL---TD-TTRDESPSFAPN----GRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeE-Ec---cC-CCCccCceECCC----CCEEEEEEecCCCEEEEEEEC
Confidence 766544 6999999876522 22 21 123467899999 88777766543 3444455
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=5.7e-10 Score=91.32 Aligned_cols=187 Identities=20% Similarity=0.259 Sum_probs=139.7
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeecccc---CcceEEEEE------e----------------CCeEEEEcCCCcEEEE
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAH---DDAVNGLVA------S----------------KGIVYSASADGKIKAW 193 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~------~----------------~~~l~~~~~dg~i~iw 193 (353)
.+++....||.+++||...++....+... .+..++..| + ...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 68899999999999999988877766431 233333333 1 1178888999999999
Q ss_pred eCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEcC
Q 018591 194 GKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVG 270 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~ 270 (353)
+...++ +...+. +.....|.++.++.+-..|.+++.|+.+..|+.... ...+........+ .++++++
T Consensus 86 s~~~g~-----it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 86 SVAGGE-----ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred EecCCe-----EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCCC
Confidence 999987 555555 333444589999999899999999999999999887 4555555544444 5556677
Q ss_pred cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC-Ce-EEEEccCCCeEEEEEcCCC
Q 018591 271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG-GF-LLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~~-~l~s~~~dg~i~iw~~~~~ 339 (353)
..+++++ +.|.+||+++.+ .+..+.||.++|+++.|..+-.+. |. +|.+...+.-+.+|-+...
T Consensus 157 ~~l~~as--~~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CEEEecc--ceEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 7888875 579999999988 788899999999999998762211 34 4555556677889987764
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=2.8e-09 Score=90.62 Aligned_cols=207 Identities=11% Similarity=0.015 Sum_probs=122.4
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
..|.++|..... ...+..+...+....|+ +++|+.+..+ ..|++||+.++.... +
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~---------------- 229 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---V---------------- 229 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---e----------------
Confidence 368888875444 34444455567777787 7777766543 479999998764211 1
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYS 183 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~ 183 (353)
..+...+.++.|+| +.|+ +.+.++ .|++||+.+++.. .+..+........|.+ ..++.
T Consensus 230 --------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~ 294 (417)
T TIGR02800 230 --------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAF 294 (417)
T ss_pred --------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEE
Confidence 12334455678888 4454 444444 5888998876543 3334444445567733 35554
Q ss_pred EcC-CC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeecc
Q 018591 184 ASA-DG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETK 257 (353)
Q Consensus 184 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~ 257 (353)
.+. ++ .|.++|+.+++ . ..+..+.... ....|+|++++++.++.++ .|.+||+.++.. .....
T Consensus 295 ~s~~~g~~~iy~~d~~~~~-----~-~~l~~~~~~~-~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~-- 363 (417)
T TIGR02800 295 TSDRGGSPQIYMMDADGGE-----V-RRLTFRGGYN-ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTD-- 363 (417)
T ss_pred EECCCCCceEEEEECCCCC-----E-EEeecCCCCc-cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccC--
Confidence 443 33 57777877664 2 2222233333 6789999999998887765 788888876521 11111
Q ss_pred ccceeEEEEEEcCcEEEEecCCC---eEEEEecC
Q 018591 258 AHEMAVLCVCLVGEFLCSGSADK---SIGIWKRE 288 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~dg---~i~iw~~~ 288 (353)
.....-..+++++++|+..+.++ .+++.+..
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 11112236777888777766543 45555544
No 261
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.28 E-value=2.6e-08 Score=77.80 Aligned_cols=216 Identities=18% Similarity=0.150 Sum_probs=136.3
Q ss_pred CCCcEEEEeCCCceeeEEecc---CceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 34 QGKDIIVWQQPDLRMFTKFGH---GDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 34 ~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
.+|+|..||..+|+.+..... ....+......++.+++++.++.|..||..+++....... +.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~----------- 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PG----------- 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SS-----------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---cc-----------
Confidence 368999999999999988754 2222222223688888889999999999988862111111 00
Q ss_pred ceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec-cccC-----cceEEEEEeCCeEEEE
Q 018591 111 SNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI-KAHD-----DAVNGLVASKGIVYSA 184 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~-----~~v~~i~~~~~~l~~~ 184 (353)
..... .....+.+++++.++.++.+|..+++.+... .... .......+.++.++.+
T Consensus 67 ---------------~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (238)
T PF13360_consen 67 ---------------PISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG 128 (238)
T ss_dssp ---------------CGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE
T ss_pred ---------------cccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE
Confidence 00011 2334477777878899999999999998874 3221 1223344467788888
Q ss_pred cCCCcEEEEeCCCCCcccccceeeeeccCCce---------eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeee
Q 018591 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVS---------LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACE 255 (353)
Q Consensus 185 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 255 (353)
..++.|..+|.++++ ............ +..-....++ .++.+..++.+..+|+.++...+.
T Consensus 129 ~~~g~l~~~d~~tG~-----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~---- 198 (238)
T PF13360_consen 129 TSSGKLVALDPKTGK-----LLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWS---- 198 (238)
T ss_dssp ETCSEEEEEETTTTE-----EEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEE----
T ss_pred eccCcEEEEecCCCc-----EEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEE----
Confidence 889999999999998 333333322110 0112222234 777777777644449999853331
Q ss_pred ccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591 256 TKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 256 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
.. ..........++..|+.++.++.|..||+++++.
T Consensus 199 ~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 199 KP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 11 1112222556688888888999999999999874
No 262
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=1.2e-10 Score=87.93 Aligned_cols=264 Identities=16% Similarity=0.299 Sum_probs=154.6
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----eeEEeccC------------ceeeEEEEEe----CCEEEEe
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-----MFTKFGHG------------DGSVKAVVTV----GNKVFTA 72 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~----~~~l~s~ 72 (353)
.+.|+++.|+ |.||++|...|.|.++.-+... ....+..| ...|..+.|- .+.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999997 8999999999999999754322 22334444 3467778775 3456777
Q ss_pred cCCCcEEEEEcccCccceeEE---eec--cccc-------cceeeeecccceeEeecccceeee-eecCCceEEEEEeC-
Q 018591 73 HQDSRIRVWKVSRSSENVFRL---VDT--LPTT-------KDYLGKFMKQSNYVQTRRHHKRLW-IEHADSISCLTVYN- 138 (353)
Q Consensus 73 ~~dg~i~~w~~~~~~~~~~~~---~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~- 138 (353)
+.|.+|++|.+.......+.. ... .+-. .....+.... .......+.+++ ..|.-.|+++.++.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~h--d~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEH--DEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccccc--ceEEEeccceeccccceeEeeeeeecCc
Confidence 788999999987653211110 000 0000 0001111111 112222334444 57888999999998
Q ss_pred CeEEEecCCCcEEEEEcCCce---eeeecccc-----CcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 139 GLIYSGSWDKTLKVWRVADLK---CLESIKAH-----DDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~-----~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
...+..+.|=.|.+|+++-.. .+..++.| ..-|++..|++ +.+.-.+..|.|++-|++.... +.....
T Consensus 184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al-cdn~~k 262 (460)
T COG5170 184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL-CDNSKK 262 (460)
T ss_pred hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh-ccCchh
Confidence 444555567889999986422 12223333 24566777743 3677778889999999985431 000001
Q ss_pred e------------eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc------------ceeE
Q 018591 208 I------------LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH------------EMAV 263 (353)
Q Consensus 208 ~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------~~~v 263 (353)
. +.+-... |..+.|+++|+++++-+. -++++||.+..+... .+.+.| ...+
T Consensus 263 lfe~~~D~v~~~ff~eivsS-ISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi---kTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSS-ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI---KTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhhhccCcccchhHHHHhhh-hcceEEcCCCcEEEEecc-ceEEEEecccccCCc---eeechHHHHHHHHHhhhhccce
Confidence 1 1111122 478999999999887654 479999998764322 222111 1111
Q ss_pred ---EEEEE--cCcEEEEecCCCeEEEEec
Q 018591 264 ---LCVCL--VGEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 264 ---~~~~~--~~~~l~~~~~dg~i~iw~~ 287 (353)
..+.+ +...+.+|+..+..-+|-.
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeecc
Confidence 22333 3567777777777666653
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.26 E-value=2.6e-09 Score=79.18 Aligned_cols=197 Identities=12% Similarity=-0.024 Sum_probs=130.9
Q ss_pred CeEEEecCCCcEEEEEcCCceee-eeccccCcceEE---EEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCL-ESIKAHDDAVNG---LVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~---i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
.+|+.|+..|...+|...+.+.. .....|...|+- .+-....+..++.|.++++.++..+. .........-
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-----~~~~~h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-----NKFAVHNQNL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-----ccceeecccc
Confidence 68999999999999999865433 222333332221 12233367778888999988887654 2222222211
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc--eeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE--MAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
.+.+++++++++++++.+....|..|.+.....-... ....... +-..+++-....+|++..||++.|||++....
T Consensus 160 -~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 160 -TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred -ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 2489999999999999999999999998775322111 1122222 33344444577999999999999999997664
Q ss_pred eEEe--ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 293 LCRV--GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 293 ~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+... ..-..|.+.++.+.|+|... -.+|.-.-.=+.+.+-|+++....+.
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~--lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGL--LDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCc--ceEEEEecCcceEEEEEcccCceeeE
Confidence 3222 12345899999999998522 34666665667899999988765543
No 264
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=3.9e-08 Score=79.57 Aligned_cols=298 Identities=13% Similarity=0.124 Sum_probs=179.2
Q ss_pred ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC--------------
Q 018591 15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS-------------- 76 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-------------- 76 (353)
-.-++..++++ |.+|++.... .|.+|..+.+..+..+.+ ..|..+.|+ +.+|.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 34477788887 8888887775 599999888877766665 356666666 78888765433
Q ss_pred -cEEEEEcccCccceeEEeeccccccce-----eeeecccceeEeeccc-ceeeee------------ecCCceEEEEEe
Q 018591 77 -RIRVWKVSRSSENVFRLVDTLPTTKDY-----LGKFMKQSNYVQTRRH-HKRLWI------------EHADSISCLTVY 137 (353)
Q Consensus 77 -~i~~w~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~i~~~~~~ 137 (353)
.+.+||+.++. ++..++..... +..+...+.+...-.. ...+.. -....|....++
T Consensus 108 n~~~vwd~~sg~-----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 108 NNVFVWDIASGM-----IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred CceeEEeccCce-----eEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEec
Confidence 49999998876 44333332221 2222222222211100 001100 012456777777
Q ss_pred C----CeEEE-----ecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEE-E----------cCCCcEEEEeC
Q 018591 138 N----GLIYS-----GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYS-A----------SADGKIKAWGK 195 (353)
Q Consensus 138 ~----~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~-~----------~~dg~i~iwd~ 195 (353)
| ..|+. ...++.+++|.+..+..+.+-.--...=..+.|+ +++++. . -.+..+.++++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 7 22332 4567889999987665554432112222334441 221111 0 12356888888
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL 273 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 273 (353)
+... +. ....-.+ +|...+|.|.++.+++ |-.+..+.++|++.+ +...+......-..++++++++
T Consensus 263 ~e~~-----i~-V~~~~~~-pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~rNT~~fsp~~r~i 330 (561)
T COG5354 263 TERS-----IP-VEKDLKD-PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQKRNTIFFSPHERYI 330 (561)
T ss_pred cccc-----cc-eeccccc-cceeeeecccCCceeEEecccccceeecccccc-----eEEecCCcccccccccCcccEE
Confidence 7544 22 2223333 4599999998877655 457888999999886 3333444444556677788888
Q ss_pred EEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc------CCCeEEEEEcCCCC
Q 018591 274 CSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS------LDKSLRVWWVSKQS 340 (353)
Q Consensus 274 ~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~------~dg~i~iw~~~~~~ 340 (353)
+.++-| |.+.+||..... ..+..+.+-. .+-+.|+|+ ++++.+.. .|..|+||++....
T Consensus 331 l~agF~nl~gni~i~~~~~rf--~~~~~~~~~n--~s~~~wspd----~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRF--KVAGAFNGLN--TSYCDWSPD----GQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EEecCCccccceEEeccCCce--EEEEEeecCC--ceEeeccCC----ceEEEecCCCcccccCcceEEEEecCch
Confidence 886654 789999987643 2343444432 455689999 88888775 37889999987654
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.2e-08 Score=86.80 Aligned_cols=228 Identities=11% Similarity=0.033 Sum_probs=126.5
Q ss_pred cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-CC--cEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591 37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DS--RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS 111 (353)
Q Consensus 37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
.|.++|...... +.+..+...+....|+ ++.|+..+. ++ .|.+||+.+++.. .+..
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~lt~--------------- 259 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KVTS--------------- 259 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---EecC---------------
Confidence 677778655433 3444456677778887 777776543 33 5788888766421 1111
Q ss_pred eeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCc--EEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-E
Q 018591 112 NYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKT--LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-S 183 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~ 183 (353)
.........|+| +.|+ +.+.+|. |+++|+.+++.. .+..+........|+++ .++ +
T Consensus 260 ---------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~ 323 (448)
T PRK04792 260 ---------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFT 323 (448)
T ss_pred ---------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEE
Confidence 111223567888 4454 4566664 778888776543 34444555667788433 444 4
Q ss_pred EcCCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccc
Q 018591 184 ASADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKA 258 (353)
Q Consensus 184 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 258 (353)
...++ .|.++|+.+++ ... +....... ...+|+|||++++..+. ++ .|.++|+.++.. ..... .
T Consensus 324 s~~~g~~~Iy~~dl~~g~-----~~~-Lt~~g~~~-~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~--~ 392 (448)
T PRK04792 324 SERGGKPQIYRVNLASGK-----VSR-LTFEGEQN-LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTS--T 392 (448)
T ss_pred ECCCCCceEEEEECCCCC-----EEE-EecCCCCC-cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccC--C
Confidence 43344 46666777665 222 21111222 45789999998877654 34 355567766532 11111 1
Q ss_pred cceeEEEEEEcCcEEEEecC-CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 259 HEMAVLCVCLVGEFLCSGSA-DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 259 ~~~~v~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
....-..++++|+.|+.... ++ .+++++.+ ++. ...+..+.+.+...+|+|-
T Consensus 393 ~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~---~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 393 RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRF---KARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCc---eEECcCCCCCcCCCccCCC
Confidence 11122367788887765443 33 36777764 332 2334445566778888873
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.8e-08 Score=85.81 Aligned_cols=228 Identities=14% Similarity=0.051 Sum_probs=131.8
Q ss_pred cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591 37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS 111 (353)
Q Consensus 37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
.|.++|...+.. +.+..+...+....|+ ++.|+..+.+ ..|.+|+++++.... +.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~---------------- 239 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---IT---------------- 239 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---cc----------------
Confidence 488888765544 4444556678888887 7777765533 368888987765211 11
Q ss_pred eeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEE
Q 018591 112 NYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSA 184 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~ 184 (353)
...+.+....|+| +.|+ +...+| .|++||+.+++.. .+..+........|+++ .++..
T Consensus 240 --------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~ 304 (430)
T PRK00178 240 --------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFT 304 (430)
T ss_pred --------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEE
Confidence 1222334578888 4554 444455 6888899876644 34445555566778433 44443
Q ss_pred c-CCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-C--cEEEeeccccccceeeeeeccc
Q 018591 185 S-ADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-G--FVMGWEGNVEIVRWKLACETKA 258 (353)
Q Consensus 185 ~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~ 258 (353)
+ .+| .|.++|+.+++ ..... ...... ....|+|+++.++....+ + .|.++|+.++.. ......
T Consensus 305 s~~~g~~~iy~~d~~~g~-----~~~lt-~~~~~~-~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~~-- 373 (430)
T PRK00178 305 SDRGGKPQIYKVNVNGGR-----AERVT-FVGNYN-ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTDT-- 373 (430)
T ss_pred ECCCCCceEEEEECCCCC-----EEEee-cCCCCc-cceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccCC--
Confidence 3 343 57777877665 22211 111112 457899999998876543 3 477888877632 121111
Q ss_pred cceeEEEEEEcCcEEEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 259 HEMAVLCVCLVGEFLCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 259 ~~~~v~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
....-..++++|+.++..+.+ ..+.+++..... ...+..+.+.+...+|+|-
T Consensus 374 ~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~----~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 374 SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV----RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc----eEECcCCCCCcCCCccCCC
Confidence 112223678888877765543 356777775432 1223344566777888874
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=4.1e-09 Score=88.78 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=168.4
Q ss_pred CceEEEEEC--CcEEEEEeCCCcEEEEeCCCce---------------eeEEeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591 17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLR---------------MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR 77 (353)
Q Consensus 17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 77 (353)
....|++|+ ..++|.|+.||.++|-.+.+.. .-+++++|.+.|.-+.|+ .+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 467899997 7799999999999999865421 235678999999999998 667889999999
Q ss_pred EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
|.+|-+-.++ -....-+ ....+.|.+++|+. ..+.....||.|.+=.+
T Consensus 95 IiVWmlykgs-----W~EEMiN-------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 95 IIVWMLYKGS-----WCEEMIN-------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEEEeeeccc-----HHHHHhh-------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 9999987654 1111100 03455677888876 67777778887777665
Q ss_pred CCceee-eeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeec-----cCCceeeEEEE-----
Q 018591 156 ADLKCL-ESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEG-----HKDVSLNSVVV----- 222 (353)
Q Consensus 156 ~~~~~~-~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~----- 222 (353)
+..+.- +.++ ......+.|+++ .++.+-..|.+.+||....-...........+ ..+..+..+.|
T Consensus 145 dGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 145 DGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred ccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 432211 1222 223346667444 56666778999999976442111111111100 00011233444
Q ss_pred ---cCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCC---------CeEEEEecC
Q 018591 223 ---SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSAD---------KSIGIWKRE 288 (353)
Q Consensus 223 ---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---------g~i~iw~~~ 288 (353)
-|+...++++..+|.+.+-.-.+.. .+.... ....+....|+ |..|++++.+ +.|.+|..-
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~---~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDP---EPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCC---CCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 3577889999999988886554432 111111 12445555554 8888888764 356666543
Q ss_pred CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
. + .+.+++-....|++++|-.. |-.++.+ .|+.|.+=++
T Consensus 298 G-~---i~gtlkvpg~~It~lsWEg~----gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 298 G-H---IVGTLKVPGSCITGLSWEGT----GLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred h-h---heEEEecCCceeeeeEEcCC----ceEEEEE-ecceEEEEee
Confidence 2 2 34555656678999998876 5555544 3455544433
No 268
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.22 E-value=3.2e-08 Score=77.29 Aligned_cols=213 Identities=19% Similarity=0.164 Sum_probs=134.5
Q ss_pred CCCCceeeeeeCc--cCceEEEEE-CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591 3 CKSHRSLAVLSGH--VGSVSSLAL-CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR 79 (353)
Q Consensus 3 ~~~~~~~~~l~~h--~~~v~~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 79 (353)
.++|+.+....-- .....+..+ +++.+++++.++.|..||..+|+.+..+.............++.++.++.++.+.
T Consensus 10 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~ 89 (238)
T PF13360_consen 10 PRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLY 89 (238)
T ss_dssp TTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEE
T ss_pred CCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeE
Confidence 4577777777531 122222233 6778888899999999999999999887653222222345588888888888999
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 159 (353)
.+|..+++..........+. ..........+..+.++++..++.|..+|+++|+
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPP--------------------------AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCT--------------------------CSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ecccCCcceeeeeccccccc--------------------------cccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 99988887321111111000 0001122333446788888889999999999999
Q ss_pred eeeeccccCcc-----------eEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591 160 CLESIKAHDDA-----------VNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228 (353)
Q Consensus 160 ~~~~~~~~~~~-----------v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (353)
.+......... ...+.+.++.++.++.++.+.-+|+.+++ ..- ....... .. ....++..
T Consensus 144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~-----~~w--~~~~~~~-~~-~~~~~~~~ 214 (238)
T PF13360_consen 144 LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGE-----KLW--SKPISGI-YS-LPSVDGGT 214 (238)
T ss_dssp EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTE-----EEE--EECSS-E-CE-CEECCCTE
T ss_pred EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCC-----EEE--EecCCCc-cC-CceeeCCE
Confidence 98777553322 12333355688888888864444999886 222 2111111 22 13466778
Q ss_pred EEeecCCCcEEEeeccccccce
Q 018591 229 VYGGGSDGFVMGWEGNVEIVRW 250 (353)
Q Consensus 229 l~~~~~dg~i~i~d~~~~~~~~ 250 (353)
++.++.++.+..||+++++..|
T Consensus 215 l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 215 LYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEETTTEEEEEETTTTEEEE
T ss_pred EEEEeCCCEEEEEECCCCCEEe
Confidence 8888899999999999985444
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.21 E-value=1.1e-08 Score=87.10 Aligned_cols=192 Identities=15% Similarity=0.078 Sum_probs=115.4
Q ss_pred ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCC--cEEEEeC
Q 018591 126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADG--KIKAWGK 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg--~i~iwd~ 195 (353)
.+...+....|+| +.++.+..+ ..|++||+.+++.... ..+...+.++.|++ + .+ ++.+.++ .|++||+
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 4555677888988 666665543 4799999988754432 23455566788833 3 44 4445444 5888898
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
.++. . ..+..+.... ....|+|+++.|+..+. ++ .|.++|+..+.. .. ............+++++++
T Consensus 266 ~~~~-----~-~~l~~~~~~~-~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~-l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 266 DGKQ-----L-TRLTNGPGID-TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV--RR-LTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred CCCC-----E-EECCCCCCCC-CCEEECCCCCEEEEEECCCCCceEEEEECCCCCE--EE-eecCCCCccCeEECCCCCE
Confidence 8765 2 2222332222 56789999998876543 33 577777765521 11 1112222233456677888
Q ss_pred EEEecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEcC
Q 018591 273 LCSGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWVS 337 (353)
Q Consensus 273 l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~ 337 (353)
++..+.++ .|.+||+.++.. ..+ ... .......|+|+ ++.|+..+.++ .+.+.+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~-~~l---~~~-~~~~~p~~spd----g~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGE-RVL---TDT-GLDESPSFAPN----GRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCe-EEc---cCC-CCCCCceECCC----CCEEEEEEeCCCcEEEEEEECC
Confidence 88877765 789999887432 222 211 22345689999 88777776654 35555544
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=4.5e-10 Score=84.97 Aligned_cols=257 Identities=14% Similarity=0.192 Sum_probs=153.6
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
...|+++.|+ |.+|++|...|.|.++.-+....-.++....+......+ .|+.. ..-...|..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF-------DYLkS--------leieEKin~ 90 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF-------DYLKS--------LEIEEKINA 90 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccch-------hhhhh--------ccHHHHhhh
Confidence 4678999998 899999999999999986554322222222221110000 00000 023345777
Q ss_pred EEEeC----CeEEEecCCCcEEEEEcCCce-------------------ee-----------------------eec-cc
Q 018591 134 LTVYN----GLIYSGSWDKTLKVWRVADLK-------------------CL-----------------------ESI-KA 166 (353)
Q Consensus 134 ~~~~~----~~l~~~~~dg~v~iwd~~~~~-------------------~~-----------------------~~~-~~ 166 (353)
+.|.. ..++..+.|.+|++|.+.... ++ +.+ ..
T Consensus 91 I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 91 IEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred eeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 77765 678888899999999875320 00 001 24
Q ss_pred cCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC----CceeeEEEEcCC-CCeEEeecCCCcEEE
Q 018591 167 HDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK----DVSLNSVVVSDD-GKWVYGGGSDGFVMG 240 (353)
Q Consensus 167 ~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~-~~~l~~~~~dg~i~i 240 (353)
|.-.++++.+ ++...+..+.|-.|.+|++.-... ...+ .-.+.|. ..+|++..|+|. ...+.-.+..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~-sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDG-SFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCC-ceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 6667888888 444555566788899999875431 1111 1122222 234688999995 467777888999999
Q ss_pred eeccccccceeeee------------eccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCC---
Q 018591 241 WEGNVEIVRWKLAC------------ETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE--- 303 (353)
Q Consensus 241 ~d~~~~~~~~~~~~------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~--- 303 (353)
-|++.......... -+......+..+.+ +|+++++-+. -+|.|||++..+. ++.++.-|.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~--pikTi~~h~~l~ 325 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN--PIKTIPMHCDLM 325 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC--CceeechHHHHH
Confidence 99985421111100 01112234444544 4778877655 5799999987665 333333332
Q ss_pred ---------cCe---EEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 304 ---------GPV---KCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 304 ---------~~v---~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
..| ..+.|+-| .+.+++|+..+...++-+
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd----~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGD----DKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCC----cccccccccccceeeecc
Confidence 233 34677777 778888888877777763
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.21 E-value=1.4e-08 Score=75.42 Aligned_cols=269 Identities=7% Similarity=-0.043 Sum_probs=162.5
Q ss_pred eCCCcEEEEeCCCce--eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591 33 SQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ 110 (353)
Q Consensus 33 ~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (353)
+....|-+|+.-+.. .+....+-+-.-.++.-...+|+.|+..|.+.+|...+.+.....+-
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd---------------- 112 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD---------------- 112 (344)
T ss_pred cceeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeec----------------
Confidence 344567788765443 23322221111111222256899999999999999987763222221
Q ss_pred ceeEeecccceeeeeecCCceE---EEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEc
Q 018591 111 SNYVQTRRHHKRLWIEHADSIS---CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSAS 185 (353)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~ 185 (353)
.|...|+ -.+-+.-.+..++.|.++++.+++-+..........-.+.++++ .+.++++.+
T Consensus 113 ---------------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg 177 (344)
T KOG4532|consen 113 ---------------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG 177 (344)
T ss_pred ---------------ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec
Confidence 1222221 11222245667788888888887543322222111123677777 344888888
Q ss_pred CCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce-eeeeeccccceeE
Q 018591 186 ADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW-KLACETKAHEMAV 263 (353)
Q Consensus 186 ~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v 263 (353)
....|..|.+...... ....... ..+.. -+..|+.....+|++..||.+.|||++...... ......+.|.+.+
T Consensus 178 ds~~Vf~y~id~~sey---~~~~~~a~t~D~g-F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~ 253 (344)
T KOG4532|consen 178 DSRRVFRYAIDDESEY---IENIYEAPTSDHG-FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF 253 (344)
T ss_pred CCCcceEEEeCCccce---eeeeEecccCCCc-eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence 8999999998766522 2222222 22333 778899999999999999999999998754332 2333344577888
Q ss_pred EEEEEc----CcEEEEecCCCeEEEEecCCCcceEEecccc----CCC-cCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 264 LCVCLV----GEFLCSGSADKSIGIWKREAFGKLCRVGAIT----GHE-GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 264 ~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~h~-~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
..+.++ -.+|+..-.-+.+.+-|++++...+.+.... .|. ..|..-.|+.+ +.-..+.+++ .+.=|
T Consensus 254 R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~----n~s~~v~~e~-~~ae~ 328 (344)
T KOG4532|consen 254 RVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE----NESNDVKNEL-QGAEY 328 (344)
T ss_pred EEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC----Ccccccccch-hhhee
Confidence 777776 2356666666789999999987655543322 233 33777788877 6666666655 35566
Q ss_pred EcCCCCC
Q 018591 335 WVSKQSS 341 (353)
Q Consensus 335 ~~~~~~~ 341 (353)
++.+...
T Consensus 329 ni~srsR 335 (344)
T KOG4532|consen 329 NILSRSR 335 (344)
T ss_pred eccccce
Confidence 6665443
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=6.9e-10 Score=93.28 Aligned_cols=241 Identities=12% Similarity=0.054 Sum_probs=156.1
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
.....++.|+ .+++++|+.||.+++-.+.+........- +.. . ....-.+.+.||...|.-
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa----------~-----snLsmNQtLeGH~~sV~v 76 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAA----------A-----SNLSMNQTLEGHNASVMV 76 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--ccc----------c-----cccchhhhhccCcceEEE
Confidence 4567899998 78999999999999999887642111100 000 0 001123455699999999
Q ss_pred EEEeC--CeEEEecCCCcEEEEEcCCceeeeecc--ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIK--AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
+.|+. +.|-+...+|.|.+|-+-.+.-...+- ...+-|.+++| .+..+...-.||.|.+=.++..+. .-.
T Consensus 77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI----wgK 152 (1189)
T KOG2041|consen 77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI----WGK 152 (1189)
T ss_pred EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee----cch
Confidence 99998 788899999999999987765444332 23556777887 333666666677666655544330 111
Q ss_pred eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-ee--e----eeeccccceeEEEEE----------EcC
Q 018591 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-WK--L----ACETKAHEMAVLCVC----------LVG 270 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~--~----~~~~~~~~~~v~~~~----------~~~ 270 (353)
.+++.. ...+.|++|.+.+..+-.+|.+++||.+.+-.. .+ + ...+......+..+. |+.
T Consensus 153 eLkg~~---l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 153 ELKGQL---LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred hcchhe---ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 222222 257889999999999999999999998764110 00 0 001111111122333 345
Q ss_pred cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
..|+++..+|.+.|..-.+...+..+. -.-.|....|+++ |..|+.++.|
T Consensus 230 P~lavcy~nGr~QiMR~eND~~Pvv~d----tgm~~vgakWnh~----G~vLAvcG~~ 279 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDPEPVVVD----TGMKIVGAKWNHN----GAVLAVCGND 279 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCCCCeEEe----cccEeecceecCC----CcEEEEccCc
Confidence 689999999999998776655433322 1246889999999 9999999875
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=1.3e-07 Score=76.11 Aligned_cols=165 Identities=13% Similarity=0.109 Sum_probs=117.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC-cEEEEEcccCccceeEEeeccccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS-RIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
|++++..|. |...+.+...+-.++. +|.+.|.-..+. ++.++.|..|| .+-++|.++++.
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-------------- 394 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-------------- 394 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--------------
Confidence 888888887 7888887666555543 345556665554 67889999999 899999988762
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG- 179 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~- 179 (353)
..+.+.-+.|.++..++ ..++++.....+.+.|++++.....-+...+-|+.+.|+++
T Consensus 395 -------------------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 395 -------------------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred -------------------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc
Confidence 22225567888999998 67888888889999999998876665666788999999555
Q ss_pred -eEEEEcCCC----cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591 180 -IVYSASADG----KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 180 -~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
+++-+--+| .|+++|+..++ .... ......- .+-+|.|++++|.--+
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~K-----iy~v-TT~ta~D-fsPaFD~d~ryLYfLs 507 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGK-----IYDV-TTPTAYD-FSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCe-----EEEe-cCCcccc-cCcccCCCCcEEEEEe
Confidence 666655544 68999999876 2222 2222222 5567888998776443
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.4e-08 Score=82.95 Aligned_cols=246 Identities=12% Similarity=0.138 Sum_probs=153.0
Q ss_pred EEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-C---CEEE-----EecCCCcEEEEEcccCccc
Q 018591 20 SSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-G---NKVF-----TAHQDSRIRVWKVSRSSEN 89 (353)
Q Consensus 20 ~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~---~~l~-----s~~~dg~i~~w~~~~~~~~ 89 (353)
++..|+ .+.|+.=-..+.+.+|++.+.+.+. ..-|...|..+.++ + ..++ ..+.-+.+++|........
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 455665 3344443445789999987643332 22346677777777 2 2343 2456678999987633211
Q ss_pred eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEe--c---------CCCcEEEEEc
Q 018591 90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSG--S---------WDKTLKVWRV 155 (353)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~--~---------~dg~v~iwd~ 155 (353)
......++ ....=..+.|++ .+|+.+ . ...++++.++
T Consensus 208 ~~~a~ksF-----------------------------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 208 QPVANKSF-----------------------------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred chhhhccc-----------------------------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 11111110 011112344544 222222 2 2347888888
Q ss_pred CCceeeeeccccCcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591 156 ADLKCLESIKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG 231 (353)
Q Consensus 156 ~~~~~~~~~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 231 (353)
....+.-.+. ..++|.++.|+++ -++.|-.-..+.+||++-.- .+.-..+.. +++.|+|.|++++.
T Consensus 259 ~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------v~df~egpR-N~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 259 QGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------VFDFPEGPR-NTAFFNPHGNIILL 328 (566)
T ss_pred cCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------eEeCCCCCc-cceEECCCCCEEEE
Confidence 7555555554 3799999999443 34445556789999998553 334444444 89999999999988
Q ss_pred ecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC------CCeEEEEecCCCcceEEeccccCC
Q 018591 232 GGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA------DKSIGIWKREAFGKLCRVGAITGH 302 (353)
Q Consensus 232 ~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~h 302 (353)
++- -|.+.+||..+. +.+..+......+..++|+|++++++.. |+.++||+... . .+.... .
T Consensus 329 AGFGNL~G~mEvwDv~n~----K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~---~l~~~~-f 399 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNR----KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-S---LLHEKM-F 399 (566)
T ss_pred eecCCCCCceEEEeccch----hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-c---eeehhh-h
Confidence 765 479999999986 6777778888889999999999998875 67899999764 3 222111 1
Q ss_pred CcCeEEEEeecC
Q 018591 303 EGPVKCLQASPN 314 (353)
Q Consensus 303 ~~~v~~~~~~~~ 314 (353)
......+.|-|-
T Consensus 400 ~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 400 KSELLQVEWRPF 411 (566)
T ss_pred hHhHhheeeeec
Confidence 114667777764
No 275
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.18 E-value=5.5e-07 Score=74.16 Aligned_cols=250 Identities=10% Similarity=0.126 Sum_probs=139.6
Q ss_pred eEEEEEC--CcEEEEEeC----CCcEEEEeCCCc--e--eeEEeccCceeeEEEEEe--CCEEEEec-CCCcEEEEEccc
Q 018591 19 VSSLALC--GEFILSASQ----GKDIIVWQQPDL--R--MFTKFGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWKVSR 85 (353)
Q Consensus 19 v~~~~~~--~~~l~s~~~----dg~v~vwd~~~~--~--~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~~~~ 85 (353)
-..|+++ +++|.+... +|.|..|++... + .+.........-..++++ +++|+++. .+|.+.+++++.
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 3455663 778887766 578999987653 3 333333222333456665 77777765 589999999987
Q ss_pred Ccc-ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCce--
Q 018591 86 SSE-NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLK-- 159 (353)
Q Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~-- 159 (353)
... .........+.. .... -........++.++| +++++. -....|.+|++....
T Consensus 119 ~g~l~~~~~~~~~~g~----------------g~~~---~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~ 179 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGS----------------GPNP---DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK 179 (345)
T ss_dssp TSEEEEEEEEEESEEE----------------ESST---TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred CcccceeeeecccCCC----------------CCcc---cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence 431 111000000000 0000 001234567889998 555554 334579999987644
Q ss_pred ee--eecc-ccCcceEEEEEeCC---eEEEEcCCCcEEEEeCC--CCCcccccceeeeec-cC--CceeeEEEEcCCCCe
Q 018591 160 CL--ESIK-AHDDAVNGLVASKG---IVYSASADGKIKAWGKE--LGKSHCHSLKGILEG-HK--DVSLNSVVVSDDGKW 228 (353)
Q Consensus 160 ~~--~~~~-~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~-~~--~~~v~~~~~~~~~~~ 228 (353)
.. ..+. ........+.|+++ .+++.-.+++|.++++. ++..........+.. .. ... ..++++|||++
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~i~ispdg~~ 258 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP-AEIAISPDGRF 258 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE-EEEEE-TTSSE
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc-eeEEEecCCCE
Confidence 21 2221 23456788999444 44566678899999988 332111111111111 11 133 78999999999
Q ss_pred EEeec-CCCcEEEeeccccccceeeeeecc--ccceeEEEEEEcCcEEEEec-CCCeEEEEecC
Q 018591 229 VYGGG-SDGFVMGWEGNVEIVRWKLACETK--AHEMAVLCVCLVGEFLCSGS-ADKSIGIWKRE 288 (353)
Q Consensus 229 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~ 288 (353)
|+++. ..+.|.+|++.......+...... +....-..++++|++|+++. .++.|.+|+++
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 87765 466899999954322233333332 33334455566898888766 67899999874
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.17 E-value=6.8e-10 Score=81.81 Aligned_cols=128 Identities=15% Similarity=0.315 Sum_probs=87.2
Q ss_pred ceEEEEEeC---CeEEEecCCCcEEEEEcCCce-eeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591 130 SISCLTVYN---GLIYSGSWDKTLKVWRVADLK-CLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHC 202 (353)
Q Consensus 130 ~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~ 202 (353)
.|.+++-+| +.+++|+.||.+.+||.++.. +...+..|+.+++.+.| ++..|++++.||.+..||..+.-
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~--- 257 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF--- 257 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce---
Confidence 488888888 788999999999999998864 34556889999999999 34499999999999999977532
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc-cceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI-VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKS 281 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 281 (353)
+ ..+++. ..+..|=-.... ...+....+......|.++...|..|++|+.-+.
T Consensus 258 ---l--------------~i~~~~---------s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~ea 311 (319)
T KOG4714|consen 258 ---L--------------SISNQA---------SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEA 311 (319)
T ss_pred ---E--------------EecCcc---------ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccce
Confidence 1 122211 111222100000 0011222233344567777778999999999999
Q ss_pred EEEEe
Q 018591 282 IGIWK 286 (353)
Q Consensus 282 i~iw~ 286 (353)
|++++
T Consensus 312 Iyl~~ 316 (319)
T KOG4714|consen 312 IYLTR 316 (319)
T ss_pred EEEec
Confidence 99876
No 277
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=7.3e-08 Score=82.16 Aligned_cols=194 Identities=13% Similarity=0.029 Sum_probs=115.3
Q ss_pred ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCC--cEEEEeC
Q 018591 126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADG--KIKAWGK 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg--~i~iwd~ 195 (353)
.+...+....|+| +.|+..+.+ ..|.+||+.+++... +....+.+....|+++ .++ +...+| .|.+||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 4566788899998 566655433 369999998876543 2223344556788433 444 455555 5888899
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
.+++ . ..+..+... .....|+||++.++..+. +| .|.++++.++... .. ...+.......++++|+.
T Consensus 275 ~~~~-----~-~~lt~~~~~-~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~l-t~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 275 ASRQ-----L-SRVTNHPAI-DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RV-TFVGNYNARPRLSADGKT 344 (430)
T ss_pred CCCC-----e-EEcccCCCC-cCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--Ee-ecCCCCccceEECCCCCE
Confidence 8775 2 223333332 367889999987765543 33 5666777665321 11 122222334567788888
Q ss_pred EEEecCC-C--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC---CeEEEEEcCCC
Q 018591 273 LCSGSAD-K--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD---KSLRVWWVSKQ 339 (353)
Q Consensus 273 l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~ 339 (353)
|+....+ + .|.+||+.+++. ..+.. ........|+|+ |+.++..+.+ ..|.++++...
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spd----g~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPN----GTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCC----CCEEEEEEecCCceEEEEEECCCC
Confidence 8766543 3 588899887652 22221 112234589999 8777766543 34666777543
No 278
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.14 E-value=1.9e-09 Score=92.93 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=135.3
Q ss_pred eCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591 137 YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS 216 (353)
Q Consensus 137 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (353)
.+..++.|+....+..+|+++.+..+...-..+.|.-|..++..+.+|...|+|.+-|.++.+ ....+..|.+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-----~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-----TIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-----eeeeeeccccce
Confidence 447788888888899999998887776654455677777777899999999999999999988 889999999855
Q ss_pred eeEEEEcCCCCeEEeecC---------CCcEEEeeccccccceeeeeeccccce-eEEEEEEc-CcEEEEecCCCeEEEE
Q 018591 217 LNSVVVSDDGKWVYGGGS---------DGFVMGWEGNVEIVRWKLACETKAHEM-AVLCVCLV-GEFLCSGSADKSIGIW 285 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~l~~~~~dg~i~iw 285 (353)
.+|+-.|+.|++++. |..|++||++.-. ......-+.+ ....+.|. ...+++.+..|...+-
T Consensus 221 ---SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr----al~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 221 ---SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR----ALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ---eeeeccCCeEEEeecccccccccccchhhhhhhhhhh----ccCCcccccCchhhhhcccccceEEEEecccceeec
Confidence 556666888888874 5678999998863 2222221211 33445554 6678888999999999
Q ss_pred ecCCCcce-EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 286 KREAFGKL-CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 286 ~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
|..+..++ ..+.....-...+.++.++++ ++.|+.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn----~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSN----GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCC----CceEEEecccCcEeeec
Confidence 94433322 122222333445999999999 99999999999999997
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.6e-08 Score=79.20 Aligned_cols=298 Identities=11% Similarity=0.119 Sum_probs=172.7
Q ss_pred EEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-----------CCcEEEEEcc
Q 018591 20 SSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-----------DSRIRVWKVS 84 (353)
Q Consensus 20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-----------dg~i~~w~~~ 84 (353)
+-+.|| |.||+|--.-| |.+|--++...++.+.|. .|.-+.|+ .++|++=+. ...+.|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC--CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 345676 88999887765 899998888888888764 45556665 788887542 2579999999
Q ss_pred cCccceeEEeeccccc-----cceeeeecccceeEeeccc-ceee--------eee---cCCceEEEEEeC--CeEEEec
Q 018591 85 RSSENVFRLVDTLPTT-----KDYLGKFMKQSNYVQTRRH-HKRL--------WIE---HADSISCLTVYN--GLIYSGS 145 (353)
Q Consensus 85 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~--------~~~---~~~~i~~~~~~~--~~l~~~~ 145 (353)
++. ....++.. .-.+.+.+....+...... ...+ +.. .-..|..+.|+| +.||-=.
T Consensus 291 tG~-----lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 291 TGL-----LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccc-----hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 987 33333221 1112223333333322111 1111 111 224567778888 3333211
Q ss_pred -----CCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEE----------EcCCCcEEEEeCCCCCcccccceee
Q 018591 146 -----WDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYS----------ASADGKIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 146 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~----------~~~dg~i~iwd~~~~~~~~~~~~~~ 208 (353)
.-..+.+-.+.+++.+++-.-+.-.=..+.| ++++|.. .+.-..+-|+.++... .+...
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd----Ipve~ 441 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD----IPVEV 441 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC----CCcee
Confidence 1134555555555555554333322233445 2333332 1222245666666554 12222
Q ss_pred eeccCCceeeEEEEcCCCCeEEeecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe---cCCCeE
Q 018591 209 LEGHKDVSLNSVVVSDDGKWVYGGGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG---SADKSI 282 (353)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~dg~i 282 (353)
... ...|...+|-|.|+.+++-+. ..++.+|.+++....+.++..+......-..++|.|++++++ |..|.+
T Consensus 442 vel--ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 442 VEL--KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDL 519 (698)
T ss_pred eec--chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccce
Confidence 222 223588999999988776543 357899998866555666666666555556677779988765 457899
Q ss_pred EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEcCC
Q 018591 283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWVSK 338 (353)
Q Consensus 283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~ 338 (353)
.++|..... ...+. ...|. ..+.+.|.|. |+|+++++. |.--++|+++.
T Consensus 520 ~F~D~~~a~-~k~~~-~~eh~-~at~veWDPt----GRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 520 EFYDTDYAD-LKDTA-SPEHF-AATEVEWDPT----GRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEEecchhh-hhhcc-Ccccc-ccccceECCC----CCEEEEeeehhhhccccceEEEEeec
Confidence 999987422 11121 12233 4688999999 999999986 44456777653
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=5.1e-07 Score=82.74 Aligned_cols=310 Identities=11% Similarity=0.022 Sum_probs=170.4
Q ss_pred cCceEEEEE--CCcEEEEEeCCCcEEEE----eCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCc
Q 018591 16 VGSVSSLAL--CGEFILSASQGKDIIVW----QQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 16 ~~~v~~~~~--~~~~l~s~~~dg~v~vw----d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
.+.|.++.+ +...++.+..+|.|.+. +..+.. +.....-...|.+++|+ +..|+.+..++++.+-+-+-..
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 467888888 36778888899999999 543322 22223335689999998 6788888888888776532111
Q ss_pred cceeEEeeccccccceeeeecccce--------eEe-----ec---ccceeeeeecCCceEEEEEeC--CeEEEecC---
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSN--------YVQ-----TR---RHHKRLWIEHADSISCLTVYN--GLIYSGSW--- 146 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~---~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--- 146 (353)
.....+.........++..-.+... ... .. ......+. +...-..++|-+ .++++.+.
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 0000111111111111110000000 000 00 00011122 444556788887 67777654
Q ss_pred ---CCcEEEEEcCCceeeeeccccCcceEEEEE-eCC-eEEEEcC---CCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591 147 ---DKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG-IVYSASA---DGKIKAWGKELGKSHCHSLKGILEGHKDVSLN 218 (353)
Q Consensus 147 ---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (353)
-..+++|+ ++|.....-+.-.+--.+++| +.+ ++++... ...|.+|.-+..+... ..-.+ .+....+.
T Consensus 233 ~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~-~~~~~~v~ 308 (928)
T PF04762_consen 233 TGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRF-DPEEEKVI 308 (928)
T ss_pred CCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCC-CCCCceee
Confidence 25799999 457665555544455567889 334 5555443 3457777654433110 11111 23344569
Q ss_pred EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEEc---CcEEEEecCCCeEEEEec----CCC
Q 018591 219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCLV---GEFLCSGSADKSIGIWKR----EAF 290 (353)
Q Consensus 219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~---~~~l~~~~~dg~i~iw~~----~~~ 290 (353)
.+.|++++..|+....|. |.+|-..+- .|-+.+++.... ..+..+.|+ ...|.....+|.+..++. ..+
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NY--HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNY--HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCC--EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 999999999999987665 999987664 333333333221 122225554 445555555455544332 111
Q ss_pred ---------------------------cceEEe--ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 291 ---------------------------GKLCRV--GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 291 ---------------------------~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
..+.++ ..+ ....+|.+++|+++ +..+++-..||.|.+|.....
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~----~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPS----NSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCC----CCeEEEEECCCCEEEEEecCC
Confidence 000011 111 13568999999998 767999999999999986554
No 281
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=4e-10 Score=86.34 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=114.7
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 259 (353)
+-++.+.+..+-+-|+.++- ...+.. ..-|.++.|...++++..|+.+|.|..+|++....-.......-.|
T Consensus 226 yhfs~G~sqqv~L~nvetg~------~qsf~s--ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh 297 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGH------QQSFQS--KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH 297 (425)
T ss_pred eeecccccceeEEEEeeccc------cccccc--chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc
Confidence 44667778889999998884 334442 2225888898889999999999999999998763222222333456
Q ss_pred ceeEEEEE---EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 260 EMAVLCVC---LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 260 ~~~v~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
...++++. +++++|.+.+.+|+|.+||.+.-+...-+..+.||...-.-+-+.-+.+ ...+++++.|...|||.+
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e--eg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE--EGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc--cceEEEccCeeEEEEEec
Confidence 77777764 4689999999999999999987663334777888865444443333222 668888999999999999
Q ss_pred CCCCCccccc
Q 018591 337 SKQSSTSDSE 346 (353)
Q Consensus 337 ~~~~~~~~~~ 346 (353)
..+..+.+..
T Consensus 376 ~~ghLl~tip 385 (425)
T KOG2695|consen 376 DSGHLLCTIP 385 (425)
T ss_pred ccCceeeccC
Confidence 9998887665
No 282
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=1.7e-08 Score=85.79 Aligned_cols=287 Identities=11% Similarity=-0.004 Sum_probs=182.1
Q ss_pred cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--------C------CEEEEecCCCcEEE
Q 018591 16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--------G------NKVFTAHQDSRIRV 80 (353)
Q Consensus 16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--------~------~~l~s~~~dg~i~~ 80 (353)
...-.++.|+ +.++|-|+. ..|.+-|..+.+.++.++.|...|+.+.|. . -.|+++...|.|.+
T Consensus 15 ~sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred cccccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3345566776 667777776 589999999999999999999999999995 1 15778888999999
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC------CeEEEecCCCcEEEEE
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~~dg~v~iwd 154 (353)
||...... +.. +..|..++..++|-+ +.|++-.....+.+|+
T Consensus 94 ~d~~~~s~-----~~~---------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwn 141 (1062)
T KOG1912|consen 94 VDFVLASV-----INW---------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWN 141 (1062)
T ss_pred EEehhhhh-----hhh---------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEE
Confidence 99887651 111 125777888888876 5677777788999999
Q ss_pred cCCceeeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcc--cccceeeeeccCC---------------
Q 018591 155 VADLKCLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSH--CHSLKGILEGHKD--------------- 214 (353)
Q Consensus 155 ~~~~~~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~--------------- 214 (353)
..+|+.............|+.+ +...+..-+..|.+.+-+.-...+. .....+....|.+
T Consensus 142 tdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~t 221 (1062)
T KOG1912|consen 142 TDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTT 221 (1062)
T ss_pred ccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccccc
Confidence 9999999888766667777777 3335555556666666654322110 0001111111111
Q ss_pred -ce--------eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEE
Q 018591 215 -VS--------LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIG 283 (353)
Q Consensus 215 -~~--------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~ 283 (353)
.+ ...++|+|.-+.++.......+.++|++-+...... .+.....+...+-|+ ...|++.-.||.+.
T Consensus 222 s~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv--pier~~akfv~vlP~~~rd~LfclH~nG~lt 299 (1062)
T KOG1912|consen 222 STPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV--PIERGGAKFVDVLPDPRRDALFCLHSNGRLT 299 (1062)
T ss_pred CCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE--EeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence 00 123567786555555556777999999877432222 222333456666666 45799999999999
Q ss_pred EEecCCCc----------------ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 284 IWKREAFG----------------KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 284 iw~~~~~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
+|-.+... +...+..++ +-.+......|.. ...++.--.+|.+.+|.+.+++..
T Consensus 300 irvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~---~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 300 IRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPST---PSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCC---hhhhhhhhhcchhHHHhhhcCCcC
Confidence 99866521 111111111 1123333444541 234555556888999999976543
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=9e-10 Score=81.17 Aligned_cols=194 Identities=16% Similarity=0.237 Sum_probs=117.9
Q ss_pred eEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeec------------ccc--CcceEEEEEeCCeEEEEcCCCcEEEEeC
Q 018591 131 ISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESI------------KAH--DDAVNGLVASKGIVYSASADGKIKAWGK 195 (353)
Q Consensus 131 i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~------------~~~--~~~v~~i~~~~~~l~~~~~dg~i~iwd~ 195 (353)
++.+.+.. ..|+++..++.+......++.+.... ..| .++...+...++.++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 55555555 66777777777766655444333222 112 2233334445668999999999999998
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-----CCCcEEEeeccccccceeeeeeccccceeEEEEEEc-
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-----SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV- 269 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~- 269 (353)
+... ............. .+.++...++.+.++. .-+..+.|+++........... ...+.+++.+
T Consensus 119 ~~~~----~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp 189 (319)
T KOG4714|consen 119 DKDL----ALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA----LDAVTALCSHP 189 (319)
T ss_pred hHHH----hhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccc----cccchhhhCCc
Confidence 7632 1222222111111 2233333444444432 1234556665543211111111 1125444443
Q ss_pred --CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 270 --GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 270 --~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
...+++|+.||.+-+||.++... +...++.|+.+|+.+-|+|.. +..|+++++||.+--||..+
T Consensus 190 ~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~l~ahk~~i~eV~FHpk~---p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 190 AQQHLVCCGTDDGIVGLWDARNVAM--PVSLLKAHKAEIWEVHFHPKN---PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccccEEEEecCCCeEEEEEcccccc--hHHHHHHhhhhhhheeccCCC---chheeEecCCCcEEEEcCCC
Confidence 56888999999999999998753 566688999999999999984 67899999999999999874
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=4.5e-07 Score=84.63 Aligned_cols=205 Identities=11% Similarity=0.061 Sum_probs=124.2
Q ss_pred eEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeecccc-----------------CcceEEEEEeC--C-eEEEEcCC
Q 018591 131 ISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKAH-----------------DDAVNGLVASK--G-IVYSASAD 187 (353)
Q Consensus 131 i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~--~-~l~~~~~d 187 (353)
-..+++++ +.|+++ ..++.|+.+|..++.. .++.+. -.....+++++ + .+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 45677776 545554 4457799999876543 222110 11235678843 3 56666778
Q ss_pred CcEEEEeCCCCCccccc---ceeeee------ccCCceeeEEEEcCCCCe-EEeecCCCcEEEeeccccccceee-----
Q 018591 188 GKIKAWGKELGKSHCHS---LKGILE------GHKDVSLNSVVVSDDGKW-VYGGGSDGFVMGWEGNVEIVRWKL----- 252 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~---~~~~~~------~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~----- 252 (353)
+.|++||..++...... ...... .....+ ..++++|+++. +++-..++.|++||+.++......
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P-~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQP-SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCc-cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 99999998776411000 000000 011223 67999999884 455666789999998865321100
Q ss_pred ----eeeccc----------cceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecc----------ccCCCcCeEE
Q 018591 253 ----ACETKA----------HEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGA----------ITGHEGPVKC 308 (353)
Q Consensus 253 ----~~~~~~----------~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------~~~h~~~v~~ 308 (353)
...+.. ....-.++.++|+++++-..++.|++||..++........ ..+.-.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 000000 0112234556688888889999999999987542211110 1112235788
Q ss_pred EEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 309 LQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 309 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
++++++ |+++++-+.++.|++||+.+++.
T Consensus 864 Iavd~d----G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGEN----GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCC----CCEEEEECCCCEEEEEECCCCcc
Confidence 999999 99999999999999999988764
No 285
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.6e-07 Score=79.86 Aligned_cols=192 Identities=11% Similarity=-0.007 Sum_probs=108.6
Q ss_pred ecCCceEEEEEeC--CeEEEecC-CC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCCc--EEEEeC
Q 018591 126 EHADSISCLTVYN--GLIYSGSW-DK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADGK--IKAWGK 195 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg~--i~iwd~ 195 (353)
.+...+.+..|+| +.|+..+. ++ .|++||+.+++.... ....+......|+++ .++ +.+.+|. |.++|+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 4566788889998 55655433 33 588999887764322 222233346778433 444 4566665 777788
Q ss_pred CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
.+++ . ..+..+... .....|+||++.++..+. ++ .|.++|+.++.. ... ...+......+++++|++
T Consensus 294 ~tg~-----~-~~lt~~~~~-~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~L-t~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 294 ATKA-----L-TRITRHRAI-DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRL-TFEGEQNLGGSITPDGRS 363 (448)
T ss_pred CCCC-----e-EECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEE-ecCCCCCcCeeECCCCCE
Confidence 7765 2 223333332 367899999998766543 44 455666665531 111 122222223467788888
Q ss_pred EEEecC-CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC-CC--eEEEEEcC
Q 018591 273 LCSGSA-DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL-DK--SLRVWWVS 337 (353)
Q Consensus 273 l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~-dg--~i~iw~~~ 337 (353)
|+..+. ++ .|.++|+.+++. ..+. .. .......|+|+ |+.|+..+. +| .+.+++..
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~-~~lt---~~-~~d~~ps~spd----G~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAM-QVLT---ST-RLDESPSVAPN----GTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCe-EEcc---CC-CCCCCceECCC----CCEEEEEEecCCceEEEEEECC
Confidence 776554 34 456677776542 2221 11 11224579999 777665544 44 36667764
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2e-06 Score=67.09 Aligned_cols=270 Identities=13% Similarity=0.183 Sum_probs=162.4
Q ss_pred CCcEEEEeCCCc--eee-EEeccCceeeEEEEEe--CCEEEEecC---CCcEEEEEcccCccceeEEeeccccccceeee
Q 018591 35 GKDIIVWQQPDL--RMF-TKFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK 106 (353)
Q Consensus 35 dg~v~vwd~~~~--~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (353)
+.-|++|++.+. +.- ..+-.+.+..+-|+++ .+.|+++-. +|.|..|.++.... ....+.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G-~Lt~ln~~~~------- 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG-RLTFLNRQTL------- 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC-eEEEeecccc-------
Confidence 467999998732 211 1122345667778887 557887754 47788888875321 1111111110
Q ss_pred ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC-ceeee--eccccCcc----------
Q 018591 107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD-LKCLE--SIKAHDDA---------- 170 (353)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~-~~~~~--~~~~~~~~---------- 170 (353)
.++ +-+-+++++ ++++++. ..|.|.++-++. |.... .+..|.+.
T Consensus 87 ------------------~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h 146 (346)
T COG2706 87 ------------------PGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPH 146 (346)
T ss_pred ------------------CCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCc
Confidence 022 225677777 5666554 457899998865 33221 11223333
Q ss_pred eEEEEE-eCC-eEEEEcC-CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeecccc
Q 018591 171 VNGLVA-SKG-IVYSASA-DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVE 246 (353)
Q Consensus 171 v~~i~~-~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 246 (353)
+....+ +++ ++++... -..|.+|++..+.......... .....+ +-+.|+|++++..+.++ +++|.+|.....
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GP-RHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGP-RHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCCCCc-ceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 666666 334 5554433 3469999999776332222222 233344 89999999998876654 889999998874
Q ss_pred ccceeeeeec-------cc-cceeEEEEEEcCcEEEEecC-CCeEEEEecCCCc-ceEEeccccCCCcCeEEEEeecCCC
Q 018591 247 IVRWKLACET-------KA-HEMAVLCVCLVGEFLCSGSA-DKSIGIWKREAFG-KLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 247 ~~~~~~~~~~-------~~-~~~~v~~~~~~~~~l~~~~~-dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
....+..+.. .+ ....-..++++|++|.++.. ...|.+|.+.... .+..+.....+....+...++|.
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~-- 301 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS-- 301 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC--
Confidence 3333322222 11 12344666778999988763 4478888887543 34344444445555889999999
Q ss_pred CCCeEEEEccCCC-eEEEEEcCCC
Q 018591 317 GGGFLLYSGSLDK-SLRVWWVSKQ 339 (353)
Q Consensus 317 ~~~~~l~s~~~dg-~i~iw~~~~~ 339 (353)
+++|+.+..|+ .|.+|.+...
T Consensus 302 --g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 302 --GRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred --CCEEEEEccCCCcEEEEEEcCC
Confidence 99999888764 6999987653
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4e-10 Score=86.33 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=108.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY 103 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 103 (353)
+-. ++.+.+-.|-+-|+++|... .|. ..+.|.++.|. ++.++.|+.+|.|..+|++........+...
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r------- 294 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR------- 294 (425)
T ss_pred eee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-------
Confidence 444 66666778889998876543 333 46778888887 7899999999999999998764222212111
Q ss_pred eeeecccceeEeecccceeeeeecCCceEEEEEe---CCeEEEecCCCcEEEEEcCCcee---eeeccccCcceEEEEE-
Q 018591 104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY---NGLIYSGSWDKTLKVWRVADLKC---LESIKAHDDAVNGLVA- 176 (353)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~i~~- 176 (353)
.-|...|+++... ...|++.+.+|.|++||++--++ +.++++|...-.-+-+
T Consensus 295 ---------------------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 295 ---------------------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred ---------------------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 1688899987754 48999999999999999987666 8888888654433333
Q ss_pred ---eCCeEEEEcCCCcEEEEeCCCCC
Q 018591 177 ---SKGIVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 177 ---~~~~l~~~~~dg~i~iwd~~~~~ 199 (353)
.++.+++++.|-..|||.++.+.
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCc
Confidence 55689999999999999999887
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.4e-09 Score=85.07 Aligned_cols=283 Identities=15% Similarity=0.083 Sum_probs=171.8
Q ss_pred ccCceEEEEEC-CcEEEEEeCCCcEEEEeCCC---ceeeEEeccCceeeEEEEEe--CCEEEEecC-CCcEEEEEcccCc
Q 018591 15 HVGSVSSLALC-GEFILSASQGKDIIVWQQPD---LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DSRIRVWKVSRSS 87 (353)
Q Consensus 15 h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~~w~~~~~~ 87 (353)
|.+.|+.+... .+++.+++.||.++.|.-.. -+.+..+..|.+.|.+++.+ +-.+.+.+. |..++++|+++-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 88899998887 89999999999999998433 24555667788888888776 667778677 9999999998765
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEE-EecCCCcEEEEEcCCce--eeeec
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIY-SGSWDKTLKVWRVADLK--CLESI 164 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~-~~~~dg~v~iwd~~~~~--~~~~~ 164 (353)
......+..+|.... ........+. .++ +.-.++.+.++|-...- ....-
T Consensus 88 minmiKL~~lPg~a~--------------------wv~skGd~~s-------~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAE--------------------WVTSKGDKIS-------LIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred hhhhcccccCCCceE--------------------EecCCCCeee-------eEEeecccCCCcEEECCcCCcCccceec
Confidence 222222222221100 0001111111 333 34567889999965433 23333
Q ss_pred cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcc----------cccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591 165 KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSH----------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 165 ~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
..|..+|..+.+ ..+.+++....|.|..|.....-+. ...-+..+......+ .++.|+|++..+.+-
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p-ts~Efsp~g~qistl 219 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP-TSFEFSPDGAQISTL 219 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc-cceEEccccCccccc
Confidence 568999999999 4457888888999999988731100 000111122223334 899999999999999
Q ss_pred cCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCc-CeEEEEe
Q 018591 233 GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG-PVKCLQA 311 (353)
Q Consensus 233 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~ 311 (353)
+.|..|++++.++++.....-........... + .+.+-.+.-+.....-+.+..|.. .-+.+.|
T Consensus 220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k----s-----------~y~l~~VelgRRmaverelek~~~~~~~~~~f 284 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK----S-----------PYGLMHVELGRRMAVERELEKHGSTVGTNAVF 284 (558)
T ss_pred CcccEEEEEEeccchhhhhhhccchhhhhccc----c-----------ccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence 99999999999998433222111111000000 0 112222211111111122333433 3356678
Q ss_pred ecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
... +++|+-|+-=| |++.++.++.....+
T Consensus 285 des----~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 285 DES----GNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred cCC----CCEEEeeccee-EEEEEeecCeEEEEe
Confidence 877 88888887766 788888877665543
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.08 E-value=1.7e-06 Score=69.90 Aligned_cols=249 Identities=14% Similarity=0.142 Sum_probs=136.9
Q ss_pred CCCceeeeeeCccCceEEEEECCcEEEEEeC----------CCcEEEEeCCCceeeEEeccCce---------eeEEEEE
Q 018591 4 KSHRSLAVLSGHVGSVSSLALCGEFILSASQ----------GKDIIVWQQPDLRMFTKFGHGDG---------SVKAVVT 64 (353)
Q Consensus 4 ~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~---------~v~~~~~ 64 (353)
.+++.+.++..-..+---++-+++.|+.+.. +..|.+||..+++.+..+..... ....+..
T Consensus 35 ~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 35 EAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred CCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence 4556666666433333223445666666554 78999999999999988864322 1334444
Q ss_pred eCCEEEEec-C-CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEE
Q 018591 65 VGNKVFTAH-Q-DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIY 142 (353)
Q Consensus 65 ~~~~l~s~~-~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 142 (353)
+|++|+... . +..|.+.|+.+++ .+..++... ...-+...+....
T Consensus 115 dgk~l~V~n~~p~~~V~VvD~~~~k-----vv~ei~vp~----------------------------~~~vy~t~e~~~~ 161 (352)
T TIGR02658 115 DNKTLLFYQFSPSPAVGVVDLEGKA-----FVRMMDVPD----------------------------CYHIFPTANDTFF 161 (352)
T ss_pred CCCEEEEecCCCCCEEEEEECCCCc-----EEEEEeCCC----------------------------CcEEEEecCCccE
Confidence 588888665 3 6899999999887 444333211 0111111111111
Q ss_pred EecCCCcEEEEEcCC-cee-e---eeccc-----cCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeec
Q 018591 143 SGSWDKTLKVWRVAD-LKC-L---ESIKA-----HDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEG 211 (353)
Q Consensus 143 ~~~~dg~v~iwd~~~-~~~-~---~~~~~-----~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 211 (353)
+-+.||......+.+ ++. . ..+.. ...+ .....++ .++.... |+|.+.|+.............+..
T Consensus 162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc
Confidence 222333333322211 110 0 01111 0112 1111234 4444444 999999976544222122222211
Q ss_pred -------cCCceeeEEEEcCCCCeEEeec----------CCCcEEEeeccccccceeeeeec-cccceeEEEEEEcCc-E
Q 018591 212 -------HKDVSLNSVVVSDDGKWVYGGG----------SDGFVMGWEGNVEIVRWKLACET-KAHEMAVLCVCLVGE-F 272 (353)
Q Consensus 212 -------~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~ 272 (353)
.... +.-++++|+++.+++.. ..+.|.++|..+.+ ....+ .++...-..++++++ +
T Consensus 239 ~~~~~~wrP~g-~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~vG~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 239 AEKADGWRPGG-WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIELGHEIDSINVSQDAKPL 313 (352)
T ss_pred cccccccCCCc-ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEeCCCceeeEEECCCCCeE
Confidence 1122 24599999999888742 22579999998873 33332 345555677788888 7
Q ss_pred EEEec-CCCeEEEEecCCCcce
Q 018591 273 LCSGS-ADKSIGIWKREAFGKL 293 (353)
Q Consensus 273 l~~~~-~dg~i~iw~~~~~~~~ 293 (353)
|++.. .++.|.++|..+++..
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEE
Confidence 77655 6888999999998743
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.07 E-value=4.7e-10 Score=59.73 Aligned_cols=37 Identities=32% Similarity=0.628 Sum_probs=34.3
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ 42 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd 42 (353)
|++++++++|.++|++|+|+ +++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999996 78999999999999997
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=1.2e-09 Score=92.08 Aligned_cols=236 Identities=13% Similarity=0.153 Sum_probs=155.5
Q ss_pred ceEEEEEC----CcEEEEEeCCCcEEEEeCC---CceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCc
Q 018591 18 SVSSLALC----GEFILSASQGKDIIVWQQP---DLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 18 ~v~~~~~~----~~~l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
.|-.+.|+ ..+-+.......-.+|++. +......+.+|...|+.+.|. ...+++++.|-.+..||++...
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 34555664 2344444445677889864 234445567899999999998 6789999999999999998765
Q ss_pred cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-eeeeec
Q 018591 88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL-KCLESI 164 (353)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~-~~~~~~ 164 (353)
...+.. ..-...-..+.|+- ..+++.+..+.|.+||++.+ .++..+
T Consensus 149 ~p~ys~-------------------------------~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~ 197 (1081)
T KOG0309|consen 149 RPFYST-------------------------------SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL 197 (1081)
T ss_pred cceeee-------------------------------ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEe
Confidence 221111 12223345567765 55666667788999999875 567788
Q ss_pred cccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC--eEEeecCCCcEE
Q 018591 165 KAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK--WVYGGGSDGFVM 239 (353)
Q Consensus 165 ~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 239 (353)
++|...|+.+.| ....+.+.+.||+|+.||....... .........++..-.+.|-|. .+.-.-.+..+.
T Consensus 198 K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e-----~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~ 272 (1081)
T KOG0309|consen 198 KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE-----SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP 272 (1081)
T ss_pred cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-----cceeccccCcceeccccccCceeEeccccCCeeee
Confidence 889999999998 3458999999999999998765421 111122233345555556433 222222222444
Q ss_pred Eeecccccc------ceeeeeeccccceeEEEEEEc------------CcEEEEecCCCeEEEEecCC
Q 018591 240 GWEGNVEIV------RWKLACETKAHEMAVLCVCLV------------GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 240 i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~~------------~~~l~~~~~dg~i~iw~~~~ 289 (353)
+++.+.... ....+..+.+|...|..+.|- .-.|++-+.|..+++|-+.+
T Consensus 273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 273 QLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 444433221 125677888999888777662 23799999999999998865
No 292
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.04 E-value=1.4e-06 Score=75.16 Aligned_cols=282 Identities=13% Similarity=0.125 Sum_probs=160.3
Q ss_pred ECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce------ee--EEEEEeC-CEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 24 LCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG------SV--KAVVTVG-NKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 24 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~------~v--~~~~~~~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
+.+..++.++.++.|.-.|..+|+.+..+..... .+ ..+...+ +.++.++.+|.|.-+|.++++..-....
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 3466777888899999999999998877654322 11 1123334 8889999999999999988873211110
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCce-EEEEEeCCeEEEec---------CCCcEEEEEcCCceeeeec
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI-SCLTVYNGLIYSGS---------WDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~ 164 (353)
.. .. .....+ .+..+..+.++.++ .+|.+..+|..+++.+..+
T Consensus 139 ~~-----~~----------------------~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 139 ND-----QV----------------------PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CC-----Cc----------------------CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 00 00 000000 01112224455543 4688999999999888776
Q ss_pred cccCc--------------------ceE-EEEE--eCCeEEEEcCCC------------------cEEEEeCCCCCcccc
Q 018591 165 KAHDD--------------------AVN-GLVA--SKGIVYSASADG------------------KIKAWGKELGKSHCH 203 (353)
Q Consensus 165 ~~~~~--------------------~v~-~i~~--~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~ 203 (353)
+.... .+. ..++ ..+.++.++.++ .|.-+|..+++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 192 YTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF 271 (488)
T ss_pred eccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence 43211 011 1233 345777777665 688999999883221
Q ss_pred cceee-----eeccCCceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEE
Q 018591 204 SLKGI-----LEGHKDVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCS 275 (353)
Q Consensus 204 ~~~~~-----~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 275 (353)
..... +.......+..+. .-++. .++.++.+|.+..+|.++++..++...... .+..+...++.
T Consensus 272 ~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-------~~~~~~~~vyv 343 (488)
T cd00216 272 YQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-------PMAYDPGLVYL 343 (488)
T ss_pred eeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-------ccccCCceEEE
Confidence 10000 0011111111111 01232 678889999999999999977665432200 01111232332
Q ss_pred e------------------cCCCeEEEEecCCCcceEEeccccCCC------cCe--EEEEeecCCCCCCeEEEEccCCC
Q 018591 276 G------------------SADKSIGIWKREAFGKLCRVGAITGHE------GPV--KCLQASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 276 ~------------------~~dg~i~iw~~~~~~~~~~~~~~~~h~------~~v--~~~~~~~~~~~~~~~l~s~~~dg 329 (353)
+ ..+|.+.-.|..+++........ .+. .+. ..+.. . +..|+.++.||
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~-~~~~~~~~g~~~~~~~~~~--~----g~~v~~g~~dG 416 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG-TIRDSWNIGFPHWGGSLAT--A----GNLVFAGAADG 416 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC-ccccccccCCcccCcceEe--c----CCeEEEECCCC
Confidence 2 24678888898888754433221 111 111 11222 2 56889999999
Q ss_pred eEEEEEcCCCCCcccccC
Q 018591 330 SLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 330 ~i~iw~~~~~~~~~~~~~ 347 (353)
.|+.+|.++++.+.+.+.
T Consensus 417 ~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 417 YFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEEEEECCCCceeeEEEC
Confidence 999999999998876653
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.04 E-value=1.1e-08 Score=88.39 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=138.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG 105 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
+..++-|+....+...|+.+.+..+......+.|.-+..+++.+.+|...|+|.+-|.++-+ .
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-----~------------ 209 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-----T------------ 209 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-----e------------
Confidence 55677777777888999998888887776666788888899999999999999999988765 3
Q ss_pred eecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecC---------CCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591 106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSW---------DKTLKVWRVADLKCLESIKAHDDAVNGLVA 176 (353)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 176 (353)
...+..|++.|..+....+.|++++. |.-|++||++..+.+..+.-+.++ .-+.|
T Consensus 210 ---------------iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf 273 (1118)
T KOG1275|consen 210 ---------------IHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRF 273 (1118)
T ss_pred ---------------eeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhh
Confidence 33344799999999999988888875 556899999988877776655544 33445
Q ss_pred eCC---eEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 177 SKG---IVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 177 ~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
.|. .+++++..|...+-|..+... +....+. ...+.-+..+.++++++.++.|..+|.|.+|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsN---P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSN---PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccceEEEEecccceeeccccccCC---CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 443 788889999999998433221 0122222 22223258999999999999999999999997
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.7e-06 Score=80.89 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=142.2
Q ss_pred EEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEecc-Cc-------------eeeEEEEEe--CCEEEEec-CCCcEEE
Q 018591 21 SLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGH-GD-------------GSVKAVVTV--GNKVFTAH-QDSRIRV 80 (353)
Q Consensus 21 ~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~-------------~~v~~~~~~--~~~l~s~~-~dg~i~~ 80 (353)
.++++ ++++++-+.++.|++||.. +..+..+.. .. ..-..++++ ++.|+.+. .++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 56664 5677777888999999975 444444432 11 123567776 55555544 4567888
Q ss_pred EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC
Q 018591 81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~ 157 (353)
+|..++. +.++............ .. .... ..-..-..+++++ ..+++.+.++.|++||..+
T Consensus 651 id~~~~~------V~tlag~G~~g~~~~g-g~-----~~~~----~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 651 IDFVNET------VRTLAGNGTKGSDYQG-GK-----KGTS----QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred EecCCCE------EEEEeccCcccCCCCC-Ch-----hhhH----hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 8886653 1111110000000000 00 0000 0011224678876 4556667788999999877
Q ss_pred ceeeeeccc---------c------CcceEEEEEeC--C-eEEEEcCCCcEEEEeCCCCCccccc--------ceeeee-
Q 018591 158 LKCLESIKA---------H------DDAVNGLVASK--G-IVYSASADGKIKAWGKELGKSHCHS--------LKGILE- 210 (353)
Q Consensus 158 ~~~~~~~~~---------~------~~~v~~i~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~- 210 (353)
+.... +.+ + -.....+++++ + .+++-+.++.|++||+.++...... ....+.
T Consensus 715 g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 64421 111 0 12345678833 3 5566677899999999876411000 000000
Q ss_pred -------ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec----------cc--cceeEEEEEEcCc
Q 018591 211 -------GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET----------KA--HEMAVLCVCLVGE 271 (353)
Q Consensus 211 -------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~--~~~~v~~~~~~~~ 271 (353)
.....+ ..++++++|+.+++-..++.|++||..++.... ....- .. ....-.++.++|+
T Consensus 794 ~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 794 HDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred CCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 011234 689999999998999999999999998763211 11000 00 1122345566788
Q ss_pred EEEEecCCCeEEEEecCCCc
Q 018591 272 FLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 272 ~l~~~~~dg~i~iw~~~~~~ 291 (353)
++++-+.++.|++||+++++
T Consensus 872 lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 872 LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCEEEEEECCCCc
Confidence 88998999999999998865
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=1.5e-09 Score=57.81 Aligned_cols=37 Identities=38% Similarity=0.644 Sum_probs=35.1
Q ss_pred EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
++..+.+|.++|++++|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~----~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPD----GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETT----SSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecc----cccceeeCCCCEEEEEC
Confidence 67788999999999999999 99999999999999997
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.5e-08 Score=84.27 Aligned_cols=179 Identities=11% Similarity=0.071 Sum_probs=125.4
Q ss_pred cCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591 16 VGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVD 95 (353)
Q Consensus 16 ~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~ 95 (353)
.+.++|+++++++|+-|+.+|.|++.+.+.. . .+...|+.. ...|.++++|+.||+|.+-.+-+..+...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~---- 108 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQ---- 108 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcccee----
Confidence 4678899999999999999999999997543 3 333333333 33499999999999999998877652111
Q ss_pred ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-------CeEEEecCCCcEEEEEcCC---ceeeeecc
Q 018591 96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-------GLIYSGSWDKTLKVWRVAD---LKCLESIK 165 (353)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~~~dg~v~iwd~~~---~~~~~~~~ 165 (353)
.....++.+++++| +.+++|+.-| +.++.-+= ...+ .+.
T Consensus 109 -----------------------------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~ 157 (846)
T KOG2066|consen 109 -----------------------------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS 157 (846)
T ss_pred -----------------------------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence 03556888999988 5899999988 77775321 1122 344
Q ss_pred ccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec------cCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 166 AHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG------HKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 166 ~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
.-.++|.++.|.+++++=++.+| +++||+...+. ...++. ....+ ..+.|.++. .|+.|-.| +|+
T Consensus 158 ~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~-----l~~i~~p~~~~R~e~fp-phl~W~~~~-~LVIGW~d-~v~ 228 (846)
T KOG2066|consen 158 EGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQR-----LTNIPPPSQSVRPELFP-PHLHWQDED-RLVIGWGD-SVK 228 (846)
T ss_pred cCccceEEEEecCcEEEEecCCC-cEEEeccccce-----eeccCCCCCCCCcccCC-CceEecCCC-eEEEecCC-eEE
Confidence 55789999999999999888776 89999988762 222211 11222 456777664 45556544 588
Q ss_pred Eeecc
Q 018591 240 GWEGN 244 (353)
Q Consensus 240 i~d~~ 244 (353)
+..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88887
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.3e-07 Score=74.41 Aligned_cols=256 Identities=13% Similarity=0.100 Sum_probs=143.2
Q ss_pred EEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeE
Q 018591 38 IIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYV 114 (353)
Q Consensus 38 v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
|++.+..+.+....+..|...|..++|+ ...+..++.+..|++.|+++.. .+...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-----~vssy----------------- 232 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-----VVSSY----------------- 232 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-----eeehe-----------------
Confidence 5555555555566667788899999998 4478899999999999998875 22211
Q ss_pred eecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce-eeeeccc--cCcceEEEEE-eCC-------e
Q 018591 115 QTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK-CLESIKA--HDDAVNGLVA-SKG-------I 180 (353)
Q Consensus 115 ~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~-~~~~~~~--~~~~v~~i~~-~~~-------~ 180 (353)
..+ ..+.+++|.- +++.+|-.+|.|.+||++..+ ++..+.+ ...+|..++. +++ .
T Consensus 233 ----------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl 301 (463)
T KOG1645|consen 233 ----------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL 301 (463)
T ss_pred ----------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence 134 6788889876 899999999999999998644 2233322 2456666655 332 3
Q ss_pred EEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-C------cEEE-eeccccccceee
Q 018591 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-G------FVMG-WEGNVEIVRWKL 252 (353)
Q Consensus 181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g------~i~i-~d~~~~~~~~~~ 252 (353)
++..+. .+..|++..... . ....++-....+..++.+.+..+.++..... . .+-. -|...+.+.+..
T Consensus 302 Lv~~lt--~l~f~ei~~s~~-~--~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~ 376 (463)
T KOG1645|consen 302 LVFALT--VLQFYEIVFSAE-C--LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGK 376 (463)
T ss_pred EEeeeh--hhhhhhhhcccc-C--CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeee
Confidence 433333 256676654331 1 1222222222333555555544443333221 0 0000 011111111111
Q ss_pred eeec------cccc-eeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 253 ACET------KAHE-MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 253 ~~~~------~~~~-~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
.... +.+. ..+...--+.-.+..|...+.+.+||..+.+ .+..+. -..+|.+++..... ++.+|+.-
T Consensus 377 r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e---vvQ~l~-~~epv~Dicp~~~n--~~syLa~L 450 (463)
T KOG1645|consen 377 RRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE---VVQTLA-LSEPVLDICPNDTN--GSSYLALL 450 (463)
T ss_pred cccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh---eeeecc-cCcceeecceeecC--Ccchhhhe
Confidence 1111 0111 1111111123344566678899999999987 444443 24678877665442 26688877
Q ss_pred cCCCeEEEEEcCC
Q 018591 326 SLDKSLRVWWVSK 338 (353)
Q Consensus 326 ~~dg~i~iw~~~~ 338 (353)
.+| .++||..+.
T Consensus 451 Td~-~v~Iyk~es 462 (463)
T KOG1645|consen 451 TDD-RVHIYKNES 462 (463)
T ss_pred ecc-eEEEEecCC
Confidence 655 788887654
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=2.1e-08 Score=78.59 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=101.8
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 259 (353)
+++.+..+....+++.+.... ...+......... . +++.|..+......+..-|.++-+|+-.... ......-+|
T Consensus 76 llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~-~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~~lGh 150 (390)
T KOG3914|consen 76 LVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKR-P-TAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEPILGH 150 (390)
T ss_pred EEEEEeCCCceEEEEEecCCC-cceeeeEeecccC-c-ceeeeeeccceEEEEeecCCceeeeeecccc--cCcchhhhh
Confidence 666666666666777665542 1122222222222 2 5566666666666655555555555443211 122334567
Q ss_pred ceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEecc-ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 260 EMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 260 ~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
-..++.+++ |+++|+++..|..|++-...... .+.. ..||+..|..++.-++ +.|+++|.|++|++||+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEec
Confidence 776666554 68999999999999998776543 2332 3589999999999985 67999999999999999
Q ss_pred CCCCCcccccC
Q 018591 337 SKQSSTSDSEE 347 (353)
Q Consensus 337 ~~~~~~~~~~~ 347 (353)
.+++++.+...
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99999876553
No 299
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1e-06 Score=74.54 Aligned_cols=202 Identities=12% Similarity=-0.025 Sum_probs=108.8
Q ss_pred CCceEEEEEeC--Ce---EEEecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEc-CCC----cEEEE
Q 018591 128 ADSISCLTVYN--GL---IYSGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSAS-ADG----KIKAW 193 (353)
Q Consensus 128 ~~~i~~~~~~~--~~---l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~-~dg----~i~iw 193 (353)
......-.|+| +. +++...+| .|.+.++..++.... ....+......|+++ .|+..+ .+| .+..|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 33455668888 22 23444443 577888877654332 223344456778433 554433 223 34446
Q ss_pred eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEee--ccccccceeeeeeccccceeEEEEEEcC
Q 018591 194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWE--GNVEIVRWKLACETKAHEMAVLCVCLVG 270 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 270 (353)
++..+.. ............. ....+|+|||+.|+..+ .+|...+|. +........... ..........++++|
T Consensus 263 ~~~~g~~--g~~~~lt~~~~~~-~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG 338 (428)
T PRK01029 263 SLETGAI--GKPRRLLNEAFGT-QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDG 338 (428)
T ss_pred ecccCCC--CcceEeecCCCCC-cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCC
Confidence 7664310 0122222222222 26789999999777654 466555554 332111111111 111122345677788
Q ss_pred cEEEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc-cC--CCeEEEEEcCCCCCc
Q 018591 271 EFLCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG-SL--DKSLRVWWVSKQSST 342 (353)
Q Consensus 271 ~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~-~~--dg~i~iw~~~~~~~~ 342 (353)
+.|+..+.+ ..|.+||+.+++.. . +......+....|+|| |+.|+.. .. ...|.+|++..++..
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~-~---Lt~~~~~~~~p~wSpD----G~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDY-Q---LTTSPENKESPSWAID----SLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeE-E---ccCCCCCccceEECCC----CCEEEEEECCCCCceEEEEECCCCCEE
Confidence 888765432 47999999887632 2 2222345678999999 8777643 32 356888898876543
No 300
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.2e-06 Score=75.80 Aligned_cols=198 Identities=14% Similarity=0.218 Sum_probs=127.9
Q ss_pred ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-eEEEEEe--CCEEEEecCCCc-----EEEEEcccCccc
Q 018591 18 SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-VKAVVTV--GNKVFTAHQDSR-----IRVWKVSRSSEN 89 (353)
Q Consensus 18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~--~~~l~s~~~dg~-----i~~w~~~~~~~~ 89 (353)
.|+|+.-++..++.|+.||.|.+.+ ...+.++.+..+... |..+... .++|++.+.|+. +++|+++.....
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 7788777899999999999999988 455666777777666 5555444 358888877754 899999865322
Q ss_pred e-eEEe---eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC----Cce
Q 018591 90 V-FRLV---DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA----DLK 159 (353)
Q Consensus 90 ~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~----~~~ 159 (353)
. ..++ ...+.. ......++.+++.+. ..+++|-.+|.|..+.-+ .+.
T Consensus 106 ~sP~c~~~~ri~~~~-----------------------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIK-----------------------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred CCcceeeeeeeeccC-----------------------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence 2 2222 111100 002456788888888 899999999999998532 122
Q ss_pred eeeeccccCcceEEEEE-eCC-e-EEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591 160 CLESIKAHDDAVNGLVA-SKG-I-VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236 (353)
Q Consensus 160 ~~~~~~~~~~~v~~i~~-~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 236 (353)
...-......+|+.+++ .++ . ++++. -..|.+|.+.... +......+.+....|..+++....+++++..
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~e- 235 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGSE- 235 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecCc-
Confidence 12222233689999999 333 3 33333 3578999988432 3333233444444888888876656666544
Q ss_pred cEEEeecccc
Q 018591 237 FVMGWEGNVE 246 (353)
Q Consensus 237 ~i~i~d~~~~ 246 (353)
.+.+|+....
T Consensus 236 ~l~fY~sd~~ 245 (933)
T KOG2114|consen 236 FLYFYDSDGR 245 (933)
T ss_pred eEEEEcCCCc
Confidence 4999998865
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.4e-08 Score=79.57 Aligned_cols=212 Identities=16% Similarity=0.163 Sum_probs=144.4
Q ss_pred ecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC---ceeeeeccccCcceEEEEE-eCC-eEEEEcC-CCcEEEEeCCCC
Q 018591 126 EHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD---LKCLESIKAHDDAVNGLVA-SKG-IVYSASA-DGKIKAWGKELG 198 (353)
Q Consensus 126 ~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~-dg~i~iwd~~~~ 198 (353)
-|...|+.+.... +++++++.||.++.|--.. -+.+..+..|-..|.+++. .++ .+.+.+. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 4788888888777 9999999999999997533 2345566778888888887 333 6666666 999999999876
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCC---CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEE
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFL 273 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 273 (353)
. ....+....-+-......+|.. ..-++.-.+|.+.++|-.....+ ......-|..+|.++..+ +..+
T Consensus 87 D-----minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q--~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 87 D-----MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ--DGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred c-----hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc--cceecccccCceEEEEeeccccce
Confidence 5 2222221111110122222221 22334456789999998765322 222334567777777665 7888
Q ss_pred EEecCCCeEEEEecCC-Ccce-----------EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 274 CSGSADKSIGIWKREA-FGKL-----------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 274 ~~~~~dg~i~iw~~~~-~~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
++....|.|.-|.... .+.+ ..+..+........++.|+|+ +..+.+-+.|..|+++.+.+++.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~----g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD----GAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc----cCcccccCcccEEEEEEeccchh
Confidence 8998999999999873 1111 011112233456899999999 99999999999999999999998
Q ss_pred cccccCC
Q 018591 342 TSDSEEK 348 (353)
Q Consensus 342 ~~~~~~~ 348 (353)
++.+++.
T Consensus 236 vqeiDE~ 242 (558)
T KOG0882|consen 236 VQEIDEV 242 (558)
T ss_pred hhhhhcc
Confidence 8877654
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=3.6e-08 Score=77.37 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=65.2
Q ss_pred ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec-cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCC
Q 018591 126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI-KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGK 199 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~ 199 (353)
||-..++.++++| ..++++..|..|++-....--.+..+ -+|..-|..++. .+..|++++.|++|++||+++++
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 8999999999999 89999999999999888765555554 579999999999 55578999999999999999998
No 303
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.91 E-value=1.3e-06 Score=70.61 Aligned_cols=166 Identities=17% Similarity=0.051 Sum_probs=116.2
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCC-cEEEEeCCCCCcccccceeeeeccCCc
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADG-KIKAWGKELGKSHCHSLKGILEGHKDV 215 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (353)
++++..+. |...+.+...+-.++. ++.+.|.-..+ .+.-++.|..|| .+-++|.++++ ...+...-+.
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~ 403 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGN 403 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCCccc
Confidence 66666665 6777777655544443 45666776666 455888899998 89999999886 4455555555
Q ss_pred eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCC----eEEEEecCC
Q 018591 216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADK----SIGIWKREA 289 (353)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg----~i~iw~~~~ 289 (353)
+ .++..+|+|++++++.....+.+.|+.++ ......+....-++.+.++ ++++|-+--+| .|+++|+.+
T Consensus 404 I-~av~vs~dGK~~vvaNdr~el~vididng----nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 404 I-EAVKVSPDGKKVVVANDRFELWVIDIDNG----NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred e-EEEEEcCCCcEEEEEcCceEEEEEEecCC----CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 4 99999999999999999999999999998 3333344455667777664 78888776655 689999998
Q ss_pred CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591 290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS 326 (353)
Q Consensus 290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~ 326 (353)
++.. .+.+..+|. .+-+|.|+ +++|.--+
T Consensus 479 ~Kiy-~vTT~ta~D---fsPaFD~d----~ryLYfLs 507 (668)
T COG4946 479 GKIY-DVTTPTAYD---FSPAFDPD----GRYLYFLS 507 (668)
T ss_pred CeEE-EecCCcccc---cCcccCCC----CcEEEEEe
Confidence 7632 233333332 34567777 77776544
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.2e-07 Score=81.14 Aligned_cols=190 Identities=17% Similarity=0.138 Sum_probs=131.4
Q ss_pred cCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccce
Q 018591 127 HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLK 206 (353)
Q Consensus 127 ~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 206 (353)
....++|++++...++.|+.+|.|++.+.. +.+ .+...|... ...+.++++|+.||++.|-.+-+.+ ..
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~-----~~ 106 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD-----EI 106 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCc-----cc
Confidence 345678888888999999999999999974 444 333344433 3356699999999999999888776 33
Q ss_pred eeeeccCCceeeEEEEcCC-----CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591 207 GILEGHKDVSLNSVVVSDD-----GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKS 281 (353)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 281 (353)
..+.-+. ++.+++++|+ .+.+++|+.-| +.++.-+--.. +....+....++|.++.|.|+++|=++.+|
T Consensus 107 ~~~df~r--piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v~l~~~eG~I~~i~W~g~lIAWand~G- 180 (846)
T KOG2066|consen 107 TQYDFKR--PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSVVLSEGEGPIHSIKWRGNLIAWANDDG- 180 (846)
T ss_pred eeEecCC--cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--ccceeeecCccceEEEEecCcEEEEecCCC-
Confidence 3333332 3589999997 56899999998 77776443211 111245566889999999999999998888
Q ss_pred EEEEecCCCcceEEeccccC---CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 282 IGIWKREAFGKLCRVGAITG---HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|++||..+.+.+..+..... ....-..+.|.++ ..|+.|=.| +|+|..++++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-----~~LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-----DRLVIGWGD-SVKICSIKKR 235 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-----CeEEEecCC-eEEEEEEecc
Confidence 99999998774322221110 1112356788875 455555334 7999988844
No 305
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.84 E-value=8.8e-06 Score=67.40 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=105.5
Q ss_pred ceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeee--ccc------cCcceEEEEE-----eC-C----e
Q 018591 120 HKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLES--IKA------HDDAVNGLVA-----SK-G----I 180 (353)
Q Consensus 120 ~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~--~~~------~~~~v~~i~~-----~~-~----~ 180 (353)
+..++....++|++++.+. ..++.|+.+|.+.+.|++....+.. +.. ....++++.| .+ + .
T Consensus 78 P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred chhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 4455556789999999999 9999999999999999987766544 222 2346778877 22 2 7
Q ss_pred EEEEcCCCcEEEEeCCC-CCc-ccccceeeeeccCCceeeEEEEcCC-C-------------------CeEEeecCCCcE
Q 018591 181 VYSASADGKIKAWGKEL-GKS-HCHSLKGILEGHKDVSLNSVVVSDD-G-------------------KWVYGGGSDGFV 238 (353)
Q Consensus 181 l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~-------------------~~l~~~~~dg~i 238 (353)
+++|...|.+.+|.+.- ... ...........+.+.++.-..++.+ | ..++....+..+
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 88999999999998752 111 1111111222233333222223221 0 123334446679
Q ss_pred EEeeccccccceeeeeeccc-cceeEEEEE-----EcCcEEEEecCCCeEEEEecCCCcceEEecccc-CCCcCeEEEEe
Q 018591 239 MGWEGNVEIVRWKLACETKA-HEMAVLCVC-----LVGEFLCSGSADKSIGIWKREAFGKLCRVGAIT-GHEGPVKCLQA 311 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~ 311 (353)
+++...+.+...+.. .. ......++. ..+..|++-..+|.+++|.+...+....+.... .+...+....+
T Consensus 238 rv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp EEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred EEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 999888764322222 11 111122221 246678888899999999999877443333211 12234556677
Q ss_pred ecCCCCCCeEEEEccCC
Q 018591 312 SPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~d 328 (353)
+++ |+.++-.+..
T Consensus 315 s~~----Gdi~~~~gps 327 (395)
T PF08596_consen 315 SRN----GDIFYWTGPS 327 (395)
T ss_dssp -TT----S-EEEE-SSS
T ss_pred CCC----CCEEEEeCcc
Confidence 888 8888777654
No 306
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=7.1e-06 Score=69.48 Aligned_cols=233 Identities=8% Similarity=-0.047 Sum_probs=121.1
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCE---EEEecCCC--cEEEEEcccCccceeEEeeccccccceeeeec
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNK---VFTAHQDS--RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM 108 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~---l~s~~~dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (353)
..|.+.|...+... .+......+..-.|+ |+. +++...+| .|.+.++.+++... +.
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~---lt------------- 227 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK---IL------------- 227 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE---ee-------------
Confidence 36777777555443 343334455556776 443 23444444 46666776654211 11
Q ss_pred ccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-C----CCcEEEEEcCCc---eeeeeccccCcceEEEEEeC
Q 018591 109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-W----DKTLKVWRVADL---KCLESIKAHDDAVNGLVASK 178 (353)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~----dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~ 178 (353)
...+......|+| +.|+..+ . +..+..|++..+ +................|++
T Consensus 228 -----------------~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 228 -----------------ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred -----------------cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence 1222334567888 4555433 2 223444776542 33333322223345678843
Q ss_pred C--eEEEE-cCCCcEEEE--eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccce
Q 018591 179 G--IVYSA-SADGKIKAW--GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRW 250 (353)
Q Consensus 179 ~--~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~ 250 (353)
+ .|+.. ..+|...+| ++..... ....+....... ....|+|||+.|+....+ ..|.+||+.++...
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~----~~~~lt~~~~~~-~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~- 364 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQ----SPRLLTKKYRNS-SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY- 364 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECccccc----ceEEeccCCCCc-cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-
Confidence 3 45544 456655555 4432110 122233333333 678999999988765443 36899999877422
Q ss_pred eeeeeccccceeEEEEEEcCcEEEEec---CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 251 KLACETKAHEMAVLCVCLVGEFLCSGS---ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.... .........++++|+.|+... ....|+++|+..++.. .+ ....+.+...+|+|.
T Consensus 365 -~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~L---t~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 365 -QLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KI---VIGSGEKRFPSWGAF 425 (428)
T ss_pred -EccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee---ecCCCcccCceecCC
Confidence 1111 111223345667788776433 2457888898876532 22 223455677888875
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.8e-06 Score=73.17 Aligned_cols=153 Identities=11% Similarity=0.108 Sum_probs=101.2
Q ss_pred ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 18 SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
..+|++..+++++.|+.-|.+++|+-..++....-. +..+.+..+..+ ..++|.|+..|.|.++.++.........+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 345555569999999999999999977766554332 233344444444 66788888899999998877442222222
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce----eeeeccccC
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK----CLESIKAHD 168 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~ 168 (353)
..... .|...|++++|++ ..+++|...|.|..-.+.+.. ..+.+-.-.
T Consensus 117 t~~d~--------------------------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 117 TPCDK--------------------------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred ccccc--------------------------cCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 21111 4889999999999 899999999999998887621 122222346
Q ss_pred cceEEEEEeCCeEEEEcCCCcEEEEeCCC
Q 018591 169 DAVNGLVASKGIVYSASADGKIKAWGKEL 197 (353)
Q Consensus 169 ~~v~~i~~~~~~l~~~~~dg~i~iwd~~~ 197 (353)
+.|..+...+.+++.++.-.. .+++.+.
T Consensus 171 s~IVQlD~~q~~LLVStl~r~-~Lc~tE~ 198 (726)
T KOG3621|consen 171 SEIVQLDYLQSYLLVSTLTRC-ILCQTEA 198 (726)
T ss_pred cceEEeecccceehHhhhhhh-heeecch
Confidence 778888887776555544333 3444443
No 308
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=2.4e-05 Score=72.17 Aligned_cols=290 Identities=14% Similarity=0.093 Sum_probs=162.5
Q ss_pred ccCceEEEEE--CCcEEEEEeC---C---CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC---CCcEEEE
Q 018591 15 HVGSVSSLAL--CGEFILSASQ---G---KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVW 81 (353)
Q Consensus 15 h~~~v~~~~~--~~~~l~s~~~---d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w 81 (353)
+.+.-..|+| ||+++|+.+. + ..+|||+-+ |++..+-+.-.+--.+++|. |+.+++... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4556678888 5899998875 2 579999954 77665555444445567775 888887654 2356666
Q ss_pred EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591 82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~ 159 (353)
.-+..+...+.+-. ......|..+.|++ ..|+.-..|. |.+|-..+..
T Consensus 287 ErNGLrhgeF~l~~-----------------------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 287 ERNGLRHGEFTLRF-----------------------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred ecCCcEeeeEecCC-----------------------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 65443322211110 13455789999998 6666655544 9999887643
Q ss_pred --eeeeccc-cCcceEEEEEe---CCeEEEEcCCCcEEEEeC----CCCCc-------------------------cccc
Q 018591 160 --CLESIKA-HDDAVNGLVAS---KGIVYSASADGKIKAWGK----ELGKS-------------------------HCHS 204 (353)
Q Consensus 160 --~~~~~~~-~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~----~~~~~-------------------------~~~~ 204 (353)
..+.+.. ....+..+.|+ +..|...+.+|.+..++. ..+.. ...+
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 2223321 12334447773 235555555555544432 11100 0111
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc----eeeeeec----------cccceeEEEEEEc-
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR----WKLACET----------KAHEMAVLCVCLV- 269 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~----------~~~~~~v~~~~~~- 269 (353)
+.....-.-...|..++|++++..+++-..||.+.+|........ ....... .........+.+.
T Consensus 417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (928)
T PF04762_consen 417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN 496 (928)
T ss_pred hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC
Confidence 222222223344699999999888999999999999986543211 0111111 1122334555553
Q ss_pred -CcEEEEecC---CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 270 -GEFLCSGSA---DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 270 -~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
..+++.... ...+.+++....+....+.....-.+.+..+...++ ...++.-..||.+...+....
T Consensus 497 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 497 DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPD----SGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCC----CcEEEEEECCCEEEEeecCCC
Confidence 333443333 367888887544332233333334556666666665 444666667898876555443
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=2.6e-05 Score=61.17 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=101.9
Q ss_pred eEEEEEe-C-CeEEEecCCCcEEEEEcCCceeeeeccc-----cCcceEEEEE-eCCeEEEEcC-C--------CcEEEE
Q 018591 131 ISCLTVY-N-GLIYSGSWDKTLKVWRVADLKCLESIKA-----HDDAVNGLVA-SKGIVYSASA-D--------GKIKAW 193 (353)
Q Consensus 131 i~~~~~~-~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~i~~-~~~~l~~~~~-d--------g~i~iw 193 (353)
...+.+. + +.++.+...+ +.++|..+++....... .....+.+++ +++.++.+.. . |.|..+
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 5566666 4 7777777655 55669888755433322 3456788888 4444444432 2 457777
Q ss_pred eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeeccccccce---eeeeeccccceeE--EEEE
Q 018591 194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVEIVRW---KLACETKAHEMAV--LCVC 267 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~v--~~~~ 267 (353)
+.. ++ ... .......+ +.++|+|+++.|+ +-+..+.|..|++....... .....+....... .++.
T Consensus 121 ~~~-~~-----~~~-~~~~~~~p-NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 121 DPD-GK-----VTV-VADGLGFP-NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ETT-SE-----EEE-EEEEESSE-EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred CCC-Ce-----EEE-EecCcccc-cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 766 33 222 22223444 8999999998765 66778889999986543211 1222233332223 3444
Q ss_pred EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cC
Q 018591 268 LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PN 314 (353)
Q Consensus 268 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~ 314 (353)
.+|++.++....+.|.+++.+ ++.. ..+.-....+++++|. |+
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~---~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLL---REIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEE---EEEE-SSSSEEEEEEESTT
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEE---EEEcCCCCCEEEEEEECCC
Confidence 458888887788999999987 5633 3233223479999995 44
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=2.2e-05 Score=59.67 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=111.8
Q ss_pred ceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc-------cCcceEEEEE-eCC-------eEEEEcCCCcEEE
Q 018591 130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA-------HDDAVNGLVA-SKG-------IVYSASADGKIKA 192 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~i~~-~~~-------~l~~~~~dg~i~i 192 (353)
.=.-++|+| ..||.+...|+|+++|+... .+..+.. -...|..+.| ... .|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 345688998 78999999999999998643 3333322 1346667777 211 6778888899888
Q ss_pred EeCCCCCc--ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-c
Q 018591 193 WGKELGKS--HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-V 269 (353)
Q Consensus 193 wd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 269 (353)
|-+..+.. -.......+..|-..-|.++.++|..++|++|+.... +.+ .-......++++.. +
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~--------~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG--------MSKASSCGLTAWRILS 189 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc--------cccccccCceEEEEcC
Confidence 87643221 1111222333343334599999999888887765432 000 00011112222222 1
Q ss_pred --CcEE-EEecCCCe------EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 270 --GEFL-CSGSADKS------IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 270 --~~~l-~~~~~dg~------i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+.+. ++...|+. -.+|.+-+.+ ...........|..|..||| |..||+...+|.|.+|++.+-.
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs~~~~~~d~i~kmSlSPd----g~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFSRQGQEQDGIFKMSLSPD----GSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCcEEEccccCccccccccccceeecccee---eeeccccCCCceEEEEECCC----CCEEEEEEcCCeEEEEecCcch
Confidence 1111 12222221 1233333221 11111224567999999999 9999999999999999999876
Q ss_pred Cccc
Q 018591 341 STSD 344 (353)
Q Consensus 341 ~~~~ 344 (353)
....
T Consensus 263 ~~~~ 266 (282)
T PF15492_consen 263 LQRS 266 (282)
T ss_pred hhcc
Confidence 5543
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.81 E-value=8.8e-06 Score=70.31 Aligned_cols=245 Identities=13% Similarity=0.123 Sum_probs=137.0
Q ss_pred cEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----e-EEEEEeCCEEEEec---------CCCcEEEEEcccCcccee
Q 018591 27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----V-KAVVTVGNKVFTAH---------QDSRIRVWKVSRSSENVF 91 (353)
Q Consensus 27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v-~~~~~~~~~l~s~~---------~dg~i~~w~~~~~~~~~~ 91 (353)
..++.++.+|.|+-+|.++|+.+..+...... + .+..+.+..++.++ .+|.+...|.++++..-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 78888999999999999999999887653321 1 12233356666654 357788888888763221
Q ss_pred EEeeccccccceeeeecccceeEeecccceeeeeecC-Cce-EEEEEeC--CeEEEecCCC------------------c
Q 018591 92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSI-SCLTVYN--GLIYSGSWDK------------------T 149 (353)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~~~~~~--~~l~~~~~dg------------------~ 149 (353)
..... +. .. ...... .....+ .+. ..+ ....+.+ +.++.++.++ .
T Consensus 191 ~~~~~-~~-~~-~~~~~~---------~~~~~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 191 FYTTE-PD-PN-AFPTWG---------PDRQMW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred eeccC-CC-cC-CCCCCC---------CCccee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 11100 00 00 000000 000000 011 111 1233433 6777777665 7
Q ss_pred EEEEEcCCceeeeeccccCcce-----------EEEE-EeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 150 LKVWRVADLKCLESIKAHDDAV-----------NGLV-ASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 150 v~iwd~~~~~~~~~~~~~~~~v-----------~~i~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
|.-+|..+++.+..++.-.... ..+. .... .++.++.+|.+...|.++++. .-......
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~-----~W~~~~~~- 331 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL-----ISARPEVE- 331 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE-----eeEeEeec-
Confidence 9999999999988764211111 1111 1122 578888999999999999982 22211110
Q ss_pred ceeeEEEEcCCCCeEEe------------------ecCCCcEEEeeccccccceeeeeeccc------cceeEEEEEEcC
Q 018591 215 VSLNSVVVSDDGKWVYG------------------GGSDGFVMGWEGNVEIVRWKLACETKA------HEMAVLCVCLVG 270 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~~ 270 (353)
..++.+| ..++. ...+|.+.-.|..+++..|+....... .......+...+
T Consensus 332 ---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g 406 (488)
T cd00216 332 ---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG 406 (488)
T ss_pred ---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence 1223333 22222 224677888888888766655432100 001112234467
Q ss_pred cEEEEecCCCeEEEEecCCCcceEE
Q 018591 271 EFLCSGSADKSIGIWKREAFGKLCR 295 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~~~~ 295 (353)
..|++++.||.|+.+|.++++....
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeE
Confidence 8899999999999999999985444
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=5.2e-06 Score=62.90 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=105.4
Q ss_pred EEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-C------ceeeEEEEEe--------CCEEEEecCCCcEEEEE
Q 018591 20 SSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-G------DGSVKAVVTV--------GNKVFTAHQDSRIRVWK 82 (353)
Q Consensus 20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~------~~~v~~~~~~--------~~~l~s~~~dg~i~~w~ 82 (353)
+-++|+ +.+||.+...|+|+++|+...++. .+.. + ...|..+.|- ...|+.-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 456775 789999999999999998754433 3322 1 3456666664 22466666777887777
Q ss_pred cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591 83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
+..+....++....+.. -..+...|.++.++| ++|++|+.... +.+.
T Consensus 126 vs~gt~q~y~e~hsfsf------------------------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~- 174 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSF------------------------SSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM- 174 (282)
T ss_pred EEcccCCcceeeEEEEe------------------------cccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-
Confidence 64432222222222111 114577899999999 67777664332 0000
Q ss_pred eeeccccCcceEEEEE-e--CC-eEEEEcCCCc------EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 161 LESIKAHDDAVNGLVA-S--KG-IVYSASADGK------IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 161 ~~~~~~~~~~v~~i~~-~--~~-~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
-.+....+++-.. + |- ..++...|+. ..+|.+-+.+ .. .........|..|..||||+.|+
T Consensus 175 ---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~-----~f-s~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 175 ---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK-----FF-SRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred ---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee-----ee-eccccCCCceEEEEECCCCCEEE
Confidence 0112223333333 1 11 2222222221 1233322221 11 11233334459999999999999
Q ss_pred eecCCCcEEEeeccccc
Q 018591 231 GGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~~ 247 (353)
+...+|.|.+|++..-.
T Consensus 246 ~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 246 CIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEEcCCeEEEEecCcch
Confidence 99999999999998753
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.4e-07 Score=71.07 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=72.3
Q ss_pred CCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRI 78 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i 78 (353)
+.+...-+.+|...|..++|+ ..++..++.+..|+|.|+++...+..+..+ ..+++++|+ .++++.|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 445566788899999999997 347899999999999999999999998887 789999998 6789999999999
Q ss_pred EEEEcccCcc
Q 018591 79 RVWKVSRSSE 88 (353)
Q Consensus 79 ~~w~~~~~~~ 88 (353)
.+||++..+.
T Consensus 261 lvyD~R~~~~ 270 (463)
T KOG1645|consen 261 LVYDMRQPEG 270 (463)
T ss_pred EEEEccCCCc
Confidence 9999987663
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.2e-06 Score=75.91 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=135.6
Q ss_pred ceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcc-eEEEEE-eC-CeEEEEcCCCc-----EEEEeCCCCCcc
Q 018591 130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDA-VNGLVA-SK-GIVYSASADGK-----IKAWGKELGKSH 201 (353)
Q Consensus 130 ~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~-~~-~~l~~~~~dg~-----i~iwd~~~~~~~ 201 (353)
.++|+.-+...++.|+.+|.|.+.+ ++.+.+..++.+... |..+.. ++ +.|++.+.|+. +++||++..+..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 6777666669999999999999988 455666888887777 555554 33 47777777654 899999765322
Q ss_pred c-ccce---eeee---ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcE
Q 018591 202 C-HSLK---GILE---GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEF 272 (353)
Q Consensus 202 ~-~~~~---~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 272 (353)
. ..+. +.+. .....++.+++.+.+-+.+++|-.+|.|..+.-.-.........-......+|+.+.+. +..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 2 2222 2222 12345668999999999999999999999985433211112222223345677777763 554
Q ss_pred -EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 273 -LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 273 -l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
++++. -..|.+|.+.... ..+..+..|..++.|-.+++. ...+++++.. .+.+|+....+.-.+.
T Consensus 186 ~lFv~T-t~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~----t~qfIca~~e-~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 186 VLFVAT-TEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDG----TYQFICAGSE-FLYFYDSDGRGPCFAF 251 (933)
T ss_pred eEEEEe-cceeEEEEecCCC--cceeeeccCCccceeeecCCC----CccEEEecCc-eEEEEcCCCcceeeee
Confidence 34433 3569999988433 234557778889999999987 4445555544 5888888765544333
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=3.8e-05 Score=57.60 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=77.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEE-eCCEEEEecCCCcEEEEEcccCccc-eeEEeeccccccce
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT-VGNKVFTAHQDSRIRVWKVSRSSEN-VFRLVDTLPTTKDY 103 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~-~~~~~~~~~~~~~~ 103 (353)
..+++.|+..+.+.--|.++|....+..- ...|.+-+. -+++++.|+..|.+++.+.++++.- .+....+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v------ 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV------ 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhh------
Confidence 67899999999999999999998866433 234444433 3999999999999999999988521 11111111
Q ss_pred eeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc
Q 018591 104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK 165 (353)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 165 (353)
+.-..++++...+..|+.|+..+..|.++..++...+
T Consensus 96 -------------------------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 96 -------------------------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -------------------------ccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 1111345555899999999999999999888877654
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.3e-08 Score=88.00 Aligned_cols=190 Identities=15% Similarity=0.155 Sum_probs=132.3
Q ss_pred CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC-C-cE
Q 018591 5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD-S-RI 78 (353)
Q Consensus 5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g-~i 78 (353)
..+..++|+.|+...+|++|+ .+.|+.|+..|.|+++++.+|........|...|+-+..+ |..+++.+.- . ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 456778899999999999998 6799999999999999999999999999999999999887 6665544332 2 56
Q ss_pred EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-CceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591 79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN--GLIYSGSWDKTLKVWRV 155 (353)
Q Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~~~~~dg~v~iwd~ 155 (353)
.+|++..-.. . .|+ ..-.++.|++ ..-+.|.......+||+
T Consensus 1170 aLW~~~s~~~----~--------------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1170 ALWDASSTGG----P--------------------------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred HHhccccccC----c--------------------------------cccccccceeehhhhHHHHHhcccccceEEEec
Confidence 7899865221 1 121 2345777877 44455566677999999
Q ss_pred CCceeeeeccc----cCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591 156 ADLKCLESIKA----HDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY 230 (353)
Q Consensus 156 ~~~~~~~~~~~----~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 230 (353)
.++.++.++-. ....-++..|+| +.|+. .|| .+||.+..+ .++.+..... ...-.|+|+|..++
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~-----aIh~FD~ft~--~~~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPE-----AIHRFDQFTD--YGGGGFHPSGNEVI 1282 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHH-----HHhhhhhhee--cccccccCCCceEE
Confidence 99887776421 112224555633 33333 233 579998775 4444433332 13456999999888
Q ss_pred eecCCCcEEEeecccc
Q 018591 231 GGGSDGFVMGWEGNVE 246 (353)
Q Consensus 231 ~~~~dg~i~i~d~~~~ 246 (353)
.-+ .|||+++-
T Consensus 1283 INS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1283 INS-----EIWDMRTF 1293 (1516)
T ss_pred eec-----hhhhhHHH
Confidence 765 58999876
No 317
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=2.7e-05 Score=63.77 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=93.2
Q ss_pred CcEEEEEcCCceeeeeccccCcceEEEEEeC--C--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591 148 KTLKVWRVADLKCLESIKAHDDAVNGLVASK--G--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS 223 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (353)
..++++++....+.... .-.++|...+|++ + -+++|-.+..+.++|++..- .+....... +.+.|+
T Consensus 255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--------~~~~Pe~~r-NT~~fs 324 (561)
T COG5354 255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--------RFYFPEQKR-NTIFFS 324 (561)
T ss_pred ceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccce--------EEecCCccc-cccccc
Confidence 56888888744433332 5588999999933 2 34455678889999998652 222333333 789999
Q ss_pred CCCCeEEeecCC---CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec------CCCeEEEEecCCCc
Q 018591 224 DDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS------ADKSIGIWKREAFG 291 (353)
Q Consensus 224 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iw~~~~~~ 291 (353)
|.+++++.++-| |.+.+||.... +.....+.+.....+.++++++++.+.. .|..+.|||+....
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~r---f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGR---FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCc---eEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 999999987655 68999998775 3445567777777788888998877664 37889999987643
No 318
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=6.8e-05 Score=59.47 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=141.1
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEec----------CCCcEEEEEcccCccceeEEeeccccccceee
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAH----------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG 105 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
+++.|.|..+++.+..+...-..-..++.+++.++++. ..-.|.+||..+-....-. .+|....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI---~iP~k~R--- 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI---EIPPKPR--- 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE---EETTS-B---
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE---ecCCcch---
Confidence 47999999999988777542222222333466666542 3346899998876511110 1111000
Q ss_pred eecccceeEeecccceeeeeecCCceEEEEEeCCeEEE--ecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEE
Q 018591 106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYS--GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVY 182 (353)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~ 182 (353)
...........+.-..+++++ .+-...|.+.|+...+.+.++... + ...+-- .++.+.
T Consensus 91 -----------------~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~~~F~ 151 (342)
T PF06433_consen 91 -----------------AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGNRGFS 151 (342)
T ss_dssp -------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEETTEEE
T ss_pred -----------------heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCCCceE
Confidence 000000011111111122221 122334566666666666665431 2 122222 556788
Q ss_pred EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc-----
Q 018591 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK----- 257 (353)
Q Consensus 183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----- 257 (353)
+.+.||.+....+.............+....+.....-++...+..++--+.+|.|+-.|+......+.....+.
T Consensus 152 ~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 152 MLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp EEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred EEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence 999999999998884332222222333333343434445555555555577889899888877643322222111
Q ss_pred -----ccceeEEEEEEcCcEEEEec---C-----CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591 258 -----AHEMAVLCVCLVGEFLCSGS---A-----DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL 322 (353)
Q Consensus 258 -----~~~~~v~~~~~~~~~l~~~~---~-----dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l 322 (353)
.......++....+.|++-- . |+ .|-++|+.+.+ ++..+.. ..++.+|..+.+. ..+|
T Consensus 232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k---rv~Ri~l-~~~~~Si~Vsqd~---~P~L 304 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK---RVARIPL-EHPIDSIAVSQDD---KPLL 304 (342)
T ss_dssp HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE---EEEEEEE-EEEESEEEEESSS---S-EE
T ss_pred ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe---EEEEEeC-CCccceEEEccCC---CcEE
Confidence 01112344444333333321 1 22 46777888877 4444332 3468899999883 4466
Q ss_pred EE-ccCCCeEEEEEcCCCCCccccc
Q 018591 323 YS-GSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 323 ~s-~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
++ ...++.+.+||..+++.+...+
T Consensus 305 ~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 305 YALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEcCCCCeEEEEeCcCCcEEeehh
Confidence 54 4568999999999998877655
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=2.9e-08 Score=85.88 Aligned_cols=201 Identities=12% Similarity=0.122 Sum_probs=134.7
Q ss_pred cccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEc-CCC-cE
Q 018591 117 RRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSAS-ADG-KI 190 (353)
Q Consensus 117 ~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~-~dg-~i 190 (353)
+-++.+.+..|....+|++|+. +.|++|+..|.|+++++.+|........|..+|+.+.. .+..+++.+ ... -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 3345566778999999999998 99999999999999999999999999999999999987 333444433 333 46
Q ss_pred EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc--ceeEEEEEE
Q 018591 191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EMAVLCVCL 268 (353)
Q Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~ 268 (353)
.+|++...- .....+... .++.|+.....-+.|+......+||++++....+......+. ......++|
T Consensus 1170 aLW~~~s~~----~~~Hsf~ed-----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSFDED-----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhcccccc----Ccccccccc-----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 789887532 122333221 678888776666667777789999999985444332222221 223344455
Q ss_pred cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 269 VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+..+++ +|| .+||++..+ .++.+...+..+ .-.|+|. |.-++.-+ .|||+++.+.+..
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~---aIh~FD~ft~~~-~G~FHP~----g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPE---AIHRFDQFTDYG-GGGFHPS----GNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred CcceEe---eCc--eeeeeccHH---HHhhhhhheecc-cccccCC----CceEEeec-----hhhhhHHHHHHhc
Confidence 555554 455 479998765 444444333222 2358898 77777765 4788887765554
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.61 E-value=0.00011 Score=57.70 Aligned_cols=196 Identities=16% Similarity=0.070 Sum_probs=117.1
Q ss_pred EEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 133 CLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 133 ~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
+..|.+ .++++-...+.|..|+..+++... +.... ...+++ .++.++.+... .+.++|..+++ ...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~-----~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGK-----VTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETT-CEEEEETTTTE-----EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcC-ceEEEecCCCc-----EEE
Confidence 456664 455555578899999988765543 22222 555666 35677777664 45666988875 222
Q ss_pred eeec---c-CCceeeEEEEcCCCCeEEeecCC--------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE-E
Q 018591 208 ILEG---H-KDVSLNSVVVSDDGKWVYGGGSD--------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL-C 274 (353)
Q Consensus 208 ~~~~---~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~ 274 (353)
.... . .....+.+++.|+|++.++.... |.+..++.. ++. .... .......-.+++++++.| +
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~-~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVA-DGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEE-EEESSEEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEe-cCcccccceEECCcchheee
Confidence 2221 1 33334899999999977765443 456777766 311 1111 112233446667778765 4
Q ss_pred EecCCCeEEEEecCCCcc-e---EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 275 SGSADKSIGIWKREAFGK-L---CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 275 ~~~~dg~i~iw~~~~~~~-~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
+-+..+.|..|++..... + ..+..+....+..-.+++..+ |++.++.-..+.|.+++.+ ++.+....
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence 667889999999864332 1 222233333345788999998 8888887788899999977 66554433
No 321
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=0.00015 Score=57.09 Aligned_cols=252 Identities=11% Similarity=0.125 Sum_probs=141.3
Q ss_pred ccCceEEEEEC--CcEEEEEeC---CCcEEEEeCCC--ceeeEE--eccCceeeEEEEEe--CCEEEEec-CCCcEEEEE
Q 018591 15 HVGSVSSLALC--GEFILSASQ---GKDIIVWQQPD--LRMFTK--FGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWK 82 (353)
Q Consensus 15 h~~~v~~~~~~--~~~l~s~~~---dg~v~vwd~~~--~~~~~~--~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~ 82 (353)
+.+..+=|+++ ++.|.++-. +|.|-.|.+.. |++... ......+-.-++.+ +++++++. .-|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 45567777886 567887755 47777777654 544321 11111222556666 77888775 447899998
Q ss_pred cccCc-ccee-EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC-CCcEEEEEcCC
Q 018591 83 VSRSS-ENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW-DKTLKVWRVAD 157 (353)
Q Consensus 83 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~-dg~v~iwd~~~ 157 (353)
+.... .... ..+...... . . -...+..+.+..+.| ++|++... --.|.+|++..
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~-p-----------------~---~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSG-P-----------------H---ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred cccCCccccceeeeecCCCC-C-----------------C---ccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 86632 1111 111100000 0 0 001122266778888 56666542 23599999987
Q ss_pred ceeeeecc---ccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCC--Ccccccceee----eeccCCceeeEEEEcCC
Q 018591 158 LKCLESIK---AHDDAVNGLVASKG---IVYSASADGKIKAWGKELG--KSHCHSLKGI----LEGHKDVSLNSVVVSDD 225 (353)
Q Consensus 158 ~~~~~~~~---~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~~~~~~~v~~~~~~~~ 225 (353)
++....-. .....-..|.|+++ ..+..-.+++|.+|..... +....+.... +.+... ...+.++||
T Consensus 177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~--~aaIhis~d 254 (346)
T COG2706 177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW--AAAIHISPD 254 (346)
T ss_pred CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc--eeEEEECCC
Confidence 65432211 23556789999555 3345556899999998774 2111111111 222222 368899999
Q ss_pred CCeEEeecC-CCcEEEeeccccccceeeeeeccccc--eeEEEEEEcCcEEEEecC-CCeEEEEecCC
Q 018591 226 GKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHE--MAVLCVCLVGEFLCSGSA-DKSIGIWKREA 289 (353)
Q Consensus 226 ~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~-dg~i~iw~~~~ 289 (353)
|++|.++.. ...|.+|.+........+......+. ..-..+++++++|+++.. +..|.+|.++.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 999988754 23677887765533333333333333 333445556888887775 45688887764
No 322
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.4e-05 Score=62.02 Aligned_cols=250 Identities=11% Similarity=0.042 Sum_probs=134.4
Q ss_pred EEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEe
Q 018591 38 IIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQ 115 (353)
Q Consensus 38 v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
...|+.........-....-.-+-+.|+ |.+|++--.. -|.+|--+.-. .+..+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~-----r~~RF------------------ 247 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQ-GIALWGGESFD-----RIQRF------------------ 247 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEecc-ceeeecCccHH-----HHHhc------------------
Confidence 4567654332222111112233456677 8888888775 46788643322 11111
Q ss_pred ecccceeeeeecCCceEEEEEeC--CeEEEecC-----------CCcEEEEEcCCceeeeecccc--CcceEE-EEE-eC
Q 018591 116 TRRHHKRLWIEHADSISCLTVYN--GLIYSGSW-----------DKTLKVWRVADLKCLESIKAH--DDAVNG-LVA-SK 178 (353)
Q Consensus 116 ~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~--~~~v~~-i~~-~~ 178 (353)
.|. .|.-+.|+| ++|++-+. ...+.|||+.+|...+.+... ...+.- ..| .+
T Consensus 248 ----------~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D 316 (698)
T KOG2314|consen 248 ----------YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD 316 (698)
T ss_pred ----------cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC
Confidence 233 466788888 77877542 257999999999988887652 233333 334 44
Q ss_pred CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC----------------C------
Q 018591 179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----------------G------ 236 (353)
Q Consensus 179 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g------ 236 (353)
+.+++.-....|.||+...-. +.......-.. |....|+|.++.||-=... .
T Consensus 317 dKy~Arm~~~sisIyEtpsf~-----lld~Kslki~g-Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 317 DKYFARMTGNSISIYETPSFM-----LLDKKSLKISG-IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN 390 (698)
T ss_pred CceeEEeccceEEEEecCcee-----eecccccCCcc-ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence 444444444678888765432 11111111111 2445555555444322110 0
Q ss_pred -----------------------------------cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecC-
Q 018591 237 -----------------------------------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSA- 278 (353)
Q Consensus 237 -----------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~- 278 (353)
.+.|+.++... .....-.-...+..++|. |+.+++-+.
T Consensus 391 lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd----Ipve~velke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 391 LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD----IPVEVVELKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC----CCceeeecchheeeeeeccCCCeEEEEEcc
Confidence 11111111110 000001123345666664 665554332
Q ss_pred --CCeEEEEecC-CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc---CCCeEEEEEcCC
Q 018591 279 --DKSIGIWKRE-AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS---LDKSLRVWWVSK 338 (353)
Q Consensus 279 --dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~ 338 (353)
..++.+|.++ +...+..+..+.. ...+.+.|+|. |++++.+. ..|.+.++|...
T Consensus 467 ~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk----G~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK----GRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC----CcEEEEEEecccccceEEEecch
Confidence 4678999988 5555555555543 45788999999 99888764 568899999884
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=0.00023 Score=64.81 Aligned_cols=275 Identities=15% Similarity=0.098 Sum_probs=140.5
Q ss_pred CceEEEEE--CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591 17 GSVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR 92 (353)
Q Consensus 17 ~~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~ 92 (353)
+.|.++.| +++.++.+..+|.|.+-|.++.... ....-...|.+++|+ ++.++..+..+++.+-+-.-..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~----- 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP----- 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc-----
Confidence 57888888 3777888888899999987765543 223336688999998 6777777777777654421110
Q ss_pred EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCc-eeeeeccccCcc
Q 018591 93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADL-KCLESIKAHDDA 170 (353)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 170 (353)
+..-+-.. .. ...+..-.+-|-. ..-+-|+. |....-+.... +....... ...
T Consensus 143 -i~E~~L~~----d~------------------~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~-~~~ 197 (1265)
T KOG1920|consen 143 -IAEKPLDA----DD------------------ERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQ-DDH 197 (1265)
T ss_pred -hhcccccc----cc------------------ccccccceecccccceeeecch-hhhcccccccccccccchhh-ccC
Confidence 00000000 00 0001111111211 11111111 11111111000 00011111 122
Q ss_pred eEEEEE-eCC-eEEEE----cCC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee---cCCCcEEE
Q 018591 171 VNGLVA-SKG-IVYSA----SAD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG---GSDGFVMG 240 (353)
Q Consensus 171 v~~i~~-~~~-~l~~~----~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i 240 (353)
=+.+.| .++ ++++. ..+ ..|++||.+ +. +...-....... .+++|-|.|..+++- ..|+.|.+
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-----Lns~se~~~~l~-~~LsWkPsgs~iA~iq~~~sd~~Ivf 270 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-----LNSTSEPVEGLQ-HSLSWKPSGSLIAAIQCKTSDSDIVF 270 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-----hhcccCcccccc-cceeecCCCCeEeeeeecCCCCcEEE
Confidence 356888 333 55542 223 789999987 43 222222222222 789999999988875 34567888
Q ss_pred eeccccccceeeeeeccccceeEEEEEEc--CcEEEE---ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591 241 WEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCS---GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA 315 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~---~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 315 (353)
|..+.- ....+...++.....+..+.|+ +..|++ ......|++|-..+.. +..-..+.-..... +.|+|..
T Consensus 271 fErNGL-~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-WYLKq~l~~~~~~~--~~W~p~~ 346 (1265)
T KOG1920|consen 271 FERNGL-RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-WYLKQELQFSQKAL--LMWDPVT 346 (1265)
T ss_pred EecCCc-cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-EEEEEEEecccccc--ccccCCC
Confidence 876543 2223333444445557888886 667776 5555669999987643 21222222222222 6777753
Q ss_pred CCCCeEEEEccCCCeEEEEEc
Q 018591 316 VGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 316 ~~~~~~l~s~~~dg~i~iw~~ 336 (353)
+ ..|..-..+|...++++
T Consensus 347 ~---~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 347 E---KTLHVLRESGQRLVRDF 364 (1265)
T ss_pred c---eeEEEEecCCcEEEEEE
Confidence 2 33333335555555443
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=3.5e-06 Score=71.51 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=99.4
Q ss_pred ceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccce
Q 018591 130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLK 206 (353)
Q Consensus 130 ~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 206 (353)
..+|++...++++.|+.-|.+++|+-..++....-. +..+.+..+..+ +.++++|+..|.|.++-+....+......
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 345666666999999999999999966554433222 223333344443 33778888899999998877442221122
Q ss_pred eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEe
Q 018591 207 GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWK 286 (353)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~ 286 (353)
..........|++++|++++..+++|...|+|.+-.+.....-......+-.....|.-++.-..+|.+++.-.. .+++
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~-~Lc~ 195 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC-ILCQ 195 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh-heee
Confidence 222221245569999999999999999999999988877311112223333445677777776555555444332 3455
Q ss_pred cCC
Q 018591 287 REA 289 (353)
Q Consensus 287 ~~~ 289 (353)
.+.
T Consensus 196 tE~ 198 (726)
T KOG3621|consen 196 TEA 198 (726)
T ss_pred cch
Confidence 544
No 325
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=0.0002 Score=60.46 Aligned_cols=188 Identities=12% Similarity=0.021 Sum_probs=108.2
Q ss_pred ceEEEEEeC--Ce-EEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCC--CcEEEEeCCCC
Q 018591 130 SISCLTVYN--GL-IYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASAD--GKIKAWGKELG 198 (353)
Q Consensus 130 ~i~~~~~~~--~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~d--g~i~iwd~~~~ 198 (353)
....-.|+| +. ++..+. +..|+++|+.+++...... ..+......|+++ .+++.+.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 666788888 42 554333 3569999998876654433 3455556678433 33344433 46888888776
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEE
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCS 275 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 275 (353)
+ .. .+..+.... ....|+|||+.|+..+. .+ .|.+.|+.++... .. ...+.. ...++++|+.|+.
T Consensus 268 ~-----~~-~LT~~~~~d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rl--t~~g~~--~~~~SPDG~~Ia~ 335 (419)
T PRK04043 268 T-----LT-QITNYPGID-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QV--VFHGKN--NSSVSTYKNYIVY 335 (419)
T ss_pred c-----EE-EcccCCCcc-CccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eC--ccCCCc--CceECCCCCEEEE
Confidence 5 22 222222222 45679999987766553 33 5777777765321 11 111211 2378888887776
Q ss_pred ecCC---------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-C--eEEEEEcCCC
Q 018591 276 GSAD---------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-K--SLRVWWVSKQ 339 (353)
Q Consensus 276 ~~~d---------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-g--~i~iw~~~~~ 339 (353)
.... ..|.+.|+.+++. ..+.. . .......|+|| |+.++..+.+ + .+.+.++...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~---~-~~~~~p~~SPD----G~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLTA---N-GVNQFPRFSSD----GGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCe-EECCC---C-CCcCCeEECCC----CCEEEEEEccCCcEEEEEEecCCC
Confidence 5543 3688888887652 22222 1 22335789999 8766655443 3 3556666544
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=1.5e-07 Score=78.62 Aligned_cols=203 Identities=18% Similarity=0.186 Sum_probs=126.7
Q ss_pred cCCceEEEEEeC----CeEEEecCCCcEEEEEcCCcee--eeeccccCcceEEEEEeC---CeEEEEcC----CCcEEEE
Q 018591 127 HADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVASK---GIVYSASA----DGKIKAW 193 (353)
Q Consensus 127 ~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~---~~l~~~~~----dg~i~iw 193 (353)
....+.|+++.- -.+++|..+|.|.+-..+...- .....++..+.++++|++ +.|++|-. |..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 345566776654 4688899999999998865432 234467788999999933 46666632 5679999
Q ss_pred eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-cCcE
Q 018591 194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEF 272 (353)
Q Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~ 272 (353)
|+.+.-..+........+..... .+++|..+.+.+.+|.....+.++|++........+.+ +.+. -..+.| .+++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gq-ns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vq--G~tVdp~~~nY 210 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQ-NSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQ--GITVDPFSPNY 210 (783)
T ss_pred ecccccCCCccccccccccccCc-cccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-hhcc--cceecCCCCCc
Confidence 99877211111111111122222 68888889999999999999999999854211111111 1111 123344 5778
Q ss_pred EEEecCCCeEEEEe-cCCCcceEEeccccCCCc----CeEEEEeecCCCCCCeEEEEccC-CCeEEEEEcCCC
Q 018591 273 LCSGSADKSIGIWK-REAFGKLCRVGAITGHEG----PVKCLQASPNAVGGGFLLYSGSL-DKSLRVWWVSKQ 339 (353)
Q Consensus 273 l~~~~~dg~i~iw~-~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~ 339 (353)
+++-. ||.|.+|| ..+-+. ++..+...+. .+..++|+|..+ | .|++... .++|+.+++..-
T Consensus 211 ~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrt--g-lla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRT--G-LLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred eeccc-cCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCc--c-hhhhhccCcceEEEeccccc
Confidence 77665 99999999 443332 3333332222 499999999854 3 4555554 578999998643
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=0.00028 Score=64.23 Aligned_cols=236 Identities=14% Similarity=0.087 Sum_probs=137.1
Q ss_pred ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591 56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC 133 (353)
Q Consensus 56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 133 (353)
...|.++.|- .+.++.+..+|.|.+-|.++.. ...+. .-...|.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~---~eivg------------------------------~vd~GI~a 114 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE---LEIVG------------------------------NVDNGISA 114 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc---eeeee------------------------------eccCceEE
Confidence 3578888886 7778888888999988776654 11221 34568999
Q ss_pred EEEeC--CeEEEecCCCcEEEEEcCCceeeeecccc-----CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591 134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAH-----DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSL 205 (353)
Q Consensus 134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 205 (353)
++|+| ..++..+.++++.+-+ .+..++....-+ .+..-.+-| ....-+-|+. |.....+..... ..
T Consensus 115 aswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~e----k~ 188 (1265)
T KOG1920|consen 115 ASWSPDEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKE----KA 188 (1265)
T ss_pred EeecCCCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccceeeecch-hhhccccccccc----cc
Confidence 99999 6777777767666554 344443332111 122222333 1111222211 222221111111 01
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEe-----ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec---
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYG-----GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS--- 277 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--- 277 (353)
......+. .. +++.|--||+++++ ......|++||.+ +. ...............++.|+|..+++-.
T Consensus 189 ~~~~~~~~-~~-~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 189 LEQIEQDD-HK-TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred ccchhhcc-CC-ceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCCCeEeeeeecC
Confidence 11111121 22 67999999999988 3333799999987 31 1222222334455677777888888754
Q ss_pred CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE---ccCCCeEEEEEcCCC
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS---GSLDKSLRVWWVSKQ 339 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s---~~~dg~i~iw~~~~~ 339 (353)
.|+.|.+|..+....-.....+.....++..++|+.+ +..|+. ......|++|-+.+.
T Consensus 264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~----sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN----SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCcEEEEecCCccccccccCCcccccchheeeecCC----CCceeeeecccccceEEEEEecCe
Confidence 4667999986643322122223334445999999999 899998 555666999988764
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.42 E-value=0.00012 Score=60.75 Aligned_cols=210 Identities=14% Similarity=0.112 Sum_probs=114.5
Q ss_pred ceEEEEEeC--CeEEEecCCCcEEEEEcCCcee-------------------------------------------eeec
Q 018591 130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLKC-------------------------------------------LESI 164 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~-------------------------------------------~~~~ 164 (353)
.|+.+.+.+ ..|++|...|.|.+|.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 477788877 7888888899998886532111 1111
Q ss_pred cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee--eeccCCceeeEEEEcC-----CC---CeEEeec
Q 018591 165 KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI--LEGHKDVSLNSVVVSD-----DG---KWVYGGG 233 (353)
Q Consensus 165 ~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~-----~~---~~l~~~~ 233 (353)
....++|++++. +=++++.|..+|.+.+.|+|............ ........++++.|.. |+ -.+++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 234688999998 45699999999999999998776211111111 1222333447787762 33 4688999
Q ss_pred CCCcEEEeeccc-cccce--eeeeeccccceeEEEEEE---c-C-------------------cEEEEecCCCeEEEEec
Q 018591 234 SDGFVMGWEGNV-EIVRW--KLACETKAHEMAVLCVCL---V-G-------------------EFLCSGSADKSIGIWKR 287 (353)
Q Consensus 234 ~dg~i~i~d~~~-~~~~~--~~~~~~~~~~~~v~~~~~---~-~-------------------~~l~~~~~dg~i~iw~~ 287 (353)
..|.+.+|.+.- ....+ .+......+...+..+.+ + | .-++....+..++++..
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998752 21222 222222234444444432 1 0 12333344677999998
Q ss_pred CCCcceEEeccccCCCcCeEEEEee-----cCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 288 EAFGKLCRVGAITGHEGPVKCLQAS-----PNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 288 ~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
.+.+..... + ...-....+.+- .. +..|++-..||.|+++.+..-+++....
T Consensus 243 ~~~k~~~K~--~-~~~~~~~~~~vv~~~~~~~----~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 243 PKSKGAHKS--F-DDPFLCSSASVVPTISRNG----GYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp T---EEEEE----SS-EEEEEEEEEEEE-EEE----EEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred CCCccccee--e-ccccccceEEEEeecccCC----ceEEEEEECCCcEEEEECCCchHhhccc
Confidence 876632222 2 222223344443 23 7789999999999999999887776544
No 329
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.00099 Score=56.37 Aligned_cols=206 Identities=7% Similarity=-0.046 Sum_probs=107.8
Q ss_pred CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCE-EEEecC---CCcEEEEEcccCccceeEEeeccccccceeeeecc
Q 018591 36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNK-VFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMK 109 (353)
Q Consensus 36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
..|.+-|..... .+.+.... ....-.|+ ++. ++..+. +..|.++|+.+++.... .
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---t-------------- 229 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---A-------------- 229 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---e--------------
Confidence 356665654333 33332222 55666776 553 553333 34688888877652111 1
Q ss_pred cceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCC--CcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEE
Q 018591 110 QSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWD--KTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVY 182 (353)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~ 182 (353)
...+......|+| +.+ ++.+.+ ..|.++|+.+++. ..+..+........|++ + .++
T Consensus 230 ----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 230 ----------------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIV 292 (419)
T ss_pred ----------------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEE
Confidence 2233344566777 334 344333 5688888877654 33433333233446733 3 343
Q ss_pred -EEcCCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---------CcEEEeeccccccce
Q 018591 183 -SASADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---------GFVMGWEGNVEIVRW 250 (353)
Q Consensus 183 -~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~ 250 (353)
+....+ .|.+.|+.+++ ..+.... .. ....|+|+|+.++..... ..|.+.|+.++..
T Consensus 293 F~Sdr~g~~~Iy~~dl~~g~-----~~rlt~~-g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-- 361 (419)
T PRK04043 293 FVSDRLGYPNIFMKKLNSGS-----VEQVVFH-GK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-- 361 (419)
T ss_pred EEECCCCCceEEEEECCCCC-----eEeCccC-CC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--
Confidence 333333 57778887776 2222211 11 124899999988766543 2577778777632
Q ss_pred eeeeeccccceeEEEEEEcCcEEEEecCC---CeEEEEecCCC
Q 018591 251 KLACETKAHEMAVLCVCLVGEFLCSGSAD---KSIGIWKREAF 290 (353)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d---g~i~iw~~~~~ 290 (353)
..... ........++|+|+.|+....+ ..+.+.+++..
T Consensus 362 ~~LT~--~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 362 RRLTA--NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EECCC--CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 11111 1122346678888876654432 24666666553
No 330
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.36 E-value=0.0014 Score=57.14 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCcEEEEEeCCCcEEEEeCCCceeeEEeccCc-eee----------EEEEEeCCEEEEecCCCcEEEEEcccCc
Q 018591 25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGD-GSV----------KAVVTVGNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v----------~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
.+..|+.++.++.|+-.|..+|+.+..+.... ..+ ..+.+.+..++.++.|+.+.-.|.++++
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCC
Confidence 36677788888999999999999988775321 111 1234456788888899999999998887
No 331
>PHA02713 hypothetical protein; Provisional
Probab=98.35 E-value=0.0002 Score=62.93 Aligned_cols=190 Identities=9% Similarity=0.045 Sum_probs=103.5
Q ss_pred eCCeEEEecCC------CcEEEEEcCCcee--eeeccccCcceEEEEEeCCeEEEEcCCC-----cEEEEeCCCCCcccc
Q 018591 137 YNGLIYSGSWD------KTLKVWRVADLKC--LESIKAHDDAVNGLVASKGIVYSASADG-----KIKAWGKELGKSHCH 203 (353)
Q Consensus 137 ~~~~l~~~~~d------g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 203 (353)
....++.|+.+ ..+..||..+..- +..+.............+...+.|+.++ .+..||..+.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~- 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM- 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE-
Confidence 33566667653 3477888776542 2222211222223333555667777654 47889988764211
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----------------------cEEEeeccccccceeeeeeccccc
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----------------------FVMGWEGNVEIVRWKLACETKAHE 260 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~ 260 (353)
...+....... ..+. -+++..+.|+.++ .+..||..++ .|.....+....
T Consensus 382 --~~~mp~~r~~~-~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r 454 (557)
T PHA02713 382 --LPDMPIALSSY-GMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGT 454 (557)
T ss_pred --CCCCCcccccc-cEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCccc
Confidence 11111111111 1122 2567777777542 4777888776 344333333333
Q ss_pred eeEEEEEEcCcEEEEecCC------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC--eEE
Q 018591 261 MAVLCVCLVGEFLCSGSAD------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK--SLR 332 (353)
Q Consensus 261 ~~v~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg--~i~ 332 (353)
........++++.+.|+.+ ..+..||..+...+..+..+.........+.+ + +++.++||.|| .+.
T Consensus 455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~----~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D----NTIMMLHCYESYMLQD 528 (557)
T ss_pred ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C----CEEEEEeeecceeehh
Confidence 3333455678877888754 24678998862234455555444433333444 3 78999999998 677
Q ss_pred EEEcCCCC
Q 018591 333 VWWVSKQS 340 (353)
Q Consensus 333 iw~~~~~~ 340 (353)
.||..+.+
T Consensus 529 ~yd~~~~~ 536 (557)
T PHA02713 529 TFNVYTYE 536 (557)
T ss_pred hcCccccc
Confidence 77777654
No 332
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.35 E-value=0.00023 Score=58.31 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=109.9
Q ss_pred CcEEEEEcCCceeeeecccc-CcceEEEEE---e------CCeEEEEcC----------CCcEEEEeCCCCCccccccee
Q 018591 148 KTLKVWRVADLKCLESIKAH-DDAVNGLVA---S------KGIVYSASA----------DGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~-~~~v~~i~~---~------~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 207 (353)
..|++.|..+.+.+..+.-. ...+.+++. . ..+++.|+. .|.|.++++.........+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888888887777665432 334555544 2 236666643 288999999884111111332
Q ss_pred eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~ 287 (353)
........+|.+++-- ++. ++++. ++.|.+|++.... ........ .....++++...++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~-~l~~~~~~-~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK-TLLKKAFY-DSPFYITSLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS-SEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc-cchhhhee-cceEEEEEEeccccEEEEEEcccCEEEEEE
Confidence 2222233445777766 343 44443 4789999998874 11222222 233478888888999999999888988865
Q ss_pred CCC-cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 288 EAF-GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 288 ~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+.. ..+..+.. ......++++.|-++ ++.++.+..+|.+.++....
T Consensus 157 ~~~~~~l~~va~-d~~~~~v~~~~~l~d----~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVAR-DYQPRWVTAAEFLVD----EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEE-ESS-BEEEEEEEE-S----SSEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEe-cCCCccEEEEEEecC----CcEEEEEcCCCeEEEEEECC
Confidence 542 22333332 234556899999987 66999999999999999874
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=0.00048 Score=51.91 Aligned_cols=106 Identities=13% Similarity=0.026 Sum_probs=78.8
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL 217 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (353)
.+++.|+..+.+.-.|..+++...+-. -...+.+-+. -+++++.|+..|.+++.+.+++. ....+.....-.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs-----~~w~f~~~~~vk- 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGS-----QIWNFVILETVK- 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchh-----heeeeeehhhhc-
Confidence 678889999999999999988776542 2444554444 67789999999999999999996 333333322222
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK 251 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 251 (353)
......+++..+..|+.|+..+..|.++....++
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 3455678899999999999999999998754444
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=0.0013 Score=55.58 Aligned_cols=117 Identities=9% Similarity=0.018 Sum_probs=74.2
Q ss_pred EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC
Q 018591 191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG 270 (353)
Q Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 270 (353)
.+|+....+.. ........-...+.+++++|+...++.|+.||.|.+||...+.... ....-.....++.|+|
T Consensus 239 ciYE~~r~klq---rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----~ka~~~P~~iaWHp~g 311 (545)
T PF11768_consen 239 CIYECSRNKLQ---RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----AKAEFIPTLIAWHPDG 311 (545)
T ss_pred EEEEeecCcee---EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----eeecccceEEEEcCCC
Confidence 45666554421 1222222233335899999999999999999999999998763221 1112223445556679
Q ss_pred cEEEEecCCCeEEEEecCCCcc-------------eEEeccccCCCcCeEEEEeecC
Q 018591 271 EFLCSGSADKSIGIWKREAFGK-------------LCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
.++++|+..|.+.+||+.-... .-.+...-.+...+..+.|.+.
T Consensus 312 ai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred cEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence 9999999999999999753211 1111222234556778888854
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.28 E-value=0.0001 Score=65.74 Aligned_cols=137 Identities=13% Similarity=0.192 Sum_probs=96.1
Q ss_pred EeCCCcEEEEeCCCceeeEEeccCcee-eEEEEEe-------CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591 32 ASQGKDIIVWQQPDLRMFTKFGHGDGS-VKAVVTV-------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY 103 (353)
Q Consensus 32 ~~~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~-------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 103 (353)
......|+-.|++.|+.+..+..|... |..++.+ +...+.|-.+..+..||.+-.... ++..-
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k---~v~~~------ 570 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK---LVDSQ------ 570 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc---eeecc------
Confidence 345678999999999999999887644 7777764 345677777789999998754311 11000
Q ss_pred eeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeE
Q 018591 104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIV 181 (353)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l 181 (353)
... .......+|++... ++||+|+.+|.|++||--..+....+.+-..+|.+|.. .++..
T Consensus 571 -----------------~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 571 -----------------SKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred -----------------ccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence 000 03455688888888 99999999999999994333334445677899999999 55555
Q ss_pred EEEcCCCcEEEEeC
Q 018591 182 YSASADGKIKAWGK 195 (353)
Q Consensus 182 ~~~~~dg~i~iwd~ 195 (353)
+.|..+..|.+++.
T Consensus 633 ilaTc~tyLlLi~t 646 (794)
T PF08553_consen 633 ILATCKTYLLLIDT 646 (794)
T ss_pred EEEeecceEEEEEE
Confidence 55555677888875
No 336
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.27 E-value=0.0018 Score=54.64 Aligned_cols=48 Identities=10% Similarity=0.293 Sum_probs=38.6
Q ss_pred cEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEccc
Q 018591 37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~ 85 (353)
.|++|+. .|+++..+.-..+.+.++.|. ...|+....||.++++|+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 4888885 566676665445899999998 77888999999999999863
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.24 E-value=0.0017 Score=53.25 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=101.8
Q ss_pred CcEEEEEcCCc----eeeeec--cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591 148 KTLKVWRVADL----KCLESI--KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV 221 (353)
Q Consensus 148 g~v~iwd~~~~----~~~~~~--~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (353)
|.|.++++.+. ..+..+ ....++|++++.-++.++++. ++.|.+|++...+ .+...-..+....+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~----~l~~~~~~~~~~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSK----TLLKKAFYDSPFYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTS----SEEEEEEE-BSSSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcc----cchhhheecceEEEEEEe
Confidence 89999999873 122221 234789999998666654444 4899999998775 122222222222335555
Q ss_pred EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC-------c-
Q 018591 222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF-------G- 291 (353)
Q Consensus 222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~-------~- 291 (353)
.. ++++++|.....+.++..+........... ......++++.+ +++.++++..+|.+.++..... .
T Consensus 137 ~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~ 213 (321)
T PF03178_consen 137 VF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDP 213 (321)
T ss_dssp EE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTT
T ss_pred cc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccc
Confidence 55 559999998888998866553222233322 222444566555 5669999999999999987631 1
Q ss_pred ceEEeccccCCCcCeEEE---EeecCCCCCC-----eEEEEccCCCeEEEE
Q 018591 292 KLCRVGAITGHEGPVKCL---QASPNAVGGG-----FLLYSGSLDKSLRVW 334 (353)
Q Consensus 292 ~~~~~~~~~~h~~~v~~~---~~~~~~~~~~-----~~l~s~~~dg~i~iw 334 (353)
.+.....+. ....|+++ .+.|. .++. ..++-++.+|.|.+.
T Consensus 214 ~L~~~~~f~-lg~~v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 214 KLERISSFH-LGDIVNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp BEEEEEEEE--SS-EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cceeEEEEE-CCCccceEEEEEeeec-CCCCcccccceEEEEecCCEEEEE
Confidence 233333332 23467777 55552 1001 357888889988743
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.24 E-value=0.00013 Score=47.58 Aligned_cols=97 Identities=23% Similarity=0.322 Sum_probs=66.3
Q ss_pred eEEEEEeC------CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccc
Q 018591 131 ISCLTVYN------GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 131 i~~~~~~~------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
|++|++.. +.|++|+.|..|++|+- .+.+.++.. ...|++++. .++.++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence 45555543 78999999999999984 466777754 567777776 7789999999999999976432
Q ss_pred cceeeeeccCCceeeEEEEcC-CC---CeEEeecCCCcEE
Q 018591 204 SLKGILEGHKDVSLNSVVVSD-DG---KWVYGGGSDGFVM 239 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~dg~i~ 239 (353)
+-+....+. +.++.+.. ++ ..|++|-.+|.|-
T Consensus 74 -lWRiKSK~~---~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 -LWRIKSKNQ---VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eeeeccCCC---eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222222222 25555433 32 3688998888774
No 339
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.21 E-value=1.7e-06 Score=72.57 Aligned_cols=240 Identities=12% Similarity=0.138 Sum_probs=135.9
Q ss_pred eeeEEEEEe----CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591 57 GSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS 132 (353)
Q Consensus 57 ~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (353)
..+.|+++. ...++.|..+|.|.+-.......... ....+|....+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~------------------------------E~tp~~ar~Ct 106 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA------------------------------EVTPGYARPCT 106 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccc------------------------------eeccccccccc
Confidence 345555554 24678888999999888766542211 11126888999
Q ss_pred EEEEeC---CeEEEec----CCCcEEEEEcCCc--eeeee--ccc-cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCC
Q 018591 133 CLTVYN---GLIYSGS----WDKTLKVWRVADL--KCLES--IKA-HDDAVNGLVA--SKGIVYSASADGKIKAWGKELG 198 (353)
Q Consensus 133 ~~~~~~---~~l~~~~----~dg~v~iwd~~~~--~~~~~--~~~-~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~ 198 (353)
+++|++ +.|++|- .|..+.|||+.++ .+... +.+ ......+++| ....+++|.....+.++|++..
T Consensus 107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 999998 6666663 4668999999876 22222 222 2344557888 3347888888889999999854
Q ss_pred CcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeecccc-c-cceeeeeeccccceeEEEEEEc---CcE
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVE-I-VRWKLACETKAHEMAVLCVCLV---GEF 272 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~~~~~~~~~~~v~~~~~~---~~~ 272 (353)
. .......... +..+.++| .+.++++-. ||.|.+||.... + +..............+..+++. ...
T Consensus 187 ~------~~~~svnTk~-vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 187 L------DSVSSVNTKY-VQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred h------hhhhhhhhhh-cccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 3 1111112222 26677788 667777665 999999994322 1 1111111111112246666664 334
Q ss_pred EEEec-CCCeEEEEecCCCcc--------eEEecc---ccCC--CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591 273 LCSGS-ADKSIGIWKREAFGK--------LCRVGA---ITGH--EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 273 l~~~~-~dg~i~iw~~~~~~~--------~~~~~~---~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 336 (353)
+++.. ..++|+++|+..-.. ...... ++.. -..|.+..|++..+ -+..+.+-..-.+.-+++
T Consensus 259 la~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~--~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASP--TERQILGVINLQPKDFSV 334 (783)
T ss_pred hhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCc--cceeEEeeccCChhhccc
Confidence 55444 567899999753211 001111 2211 24678888887643 233444444434444433
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=0.0025 Score=53.89 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=62.7
Q ss_pred EEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591 239 MGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
.+|+...++........+ .....+.+++ ++...++.|+.||.|.+||...+.. .+....-.++.++|+|+
T Consensus 239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-----~~~ka~~~P~~iaWHp~-- 310 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-----LLAKAEFIPTLIAWHPD-- 310 (545)
T ss_pred EEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----eeeeecccceEEEEcCC--
Confidence 456665543222222222 2333444444 4588999999999999999876431 12234456789999999
Q ss_pred CCCeEEEEccCCCeEEEEEcCCC
Q 018591 317 GGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 317 ~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|.++++|+.-|.+.+||+.-.
T Consensus 311 --gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 311 --GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred --CcEEEEEcCCceEEEEEeecC
Confidence 999999999999999998754
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.19 E-value=0.00027 Score=46.11 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=48.7
Q ss_pred eEEEEE---C---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEc
Q 018591 19 VSSLAL---C---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 19 v~~~~~---~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~ 83 (353)
|++|++ + .+.|+.|+.|..||+|+- .+.+.++.. ...|.+++.. +..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 677776 2 368999999999999984 366666665 4567777665 888999999999999975
No 342
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=2.8e-06 Score=62.21 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=87.5
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 259 (353)
.+...+.||.|+-++++..+... +....+... .....-+..+++|+.+|.|.+|+......... .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~----rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---~~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC----RSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---RVCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhhhhh----hhhhhhhcc----eeecccCceEEeecccceEEEecCCccchHHH---hhhcc
Confidence 55666788999888887654111 111111111 11112345799999999999998874311111 11222
Q ss_pred ceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCC-cCeEEEEeecCCCCCCeEEEEc--cCCCeEEE
Q 018591 260 EMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE-GPVKCLQASPNAVGGGFLLYSG--SLDKSLRV 333 (353)
Q Consensus 260 ~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~l~s~--~~dg~i~i 333 (353)
...+.+.-|. +.+..+++.||.||.|++...+ .+.....|+ .++..+..+.. ++.++.+ |.|..++.
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---~~g~~g~h~~~~~e~~ivv~s----d~~i~~a~~S~d~~~k~ 173 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---VLGYVGQHNFESGEELIVVGS----DEFLKIADTSHDRVLKK 173 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCc---eeeeeccccCCCcceeEEecC----CceEEeeccccchhhhh
Confidence 3344455554 4588899999999999998776 444445566 45555555555 6677777 77778888
Q ss_pred EEcCCCC
Q 018591 334 WWVSKQS 340 (353)
Q Consensus 334 w~~~~~~ 340 (353)
|+++.-.
T Consensus 174 W~ve~~~ 180 (238)
T KOG2444|consen 174 WNVEKIK 180 (238)
T ss_pred cchhhhh
Confidence 8776543
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.16 E-value=0.0011 Score=56.10 Aligned_cols=185 Identities=17% Similarity=0.095 Sum_probs=90.9
Q ss_pred ceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591 130 SISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 130 ~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 208 (353)
.-..+.|.+ +.+++-..++.|.++.--+.+....++. ...+..|-. +..|... .++.|.+||+.+++ ..+.
T Consensus 70 ~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~-G~LL~~~-~~~~i~~yDw~~~~-----~i~~ 141 (443)
T PF04053_consen 70 SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG-GNLLGVK-SSDFICFYDWETGK-----LIRR 141 (443)
T ss_dssp E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE--SSSEEEE-ETTEEEEE-TTT-------EEEE
T ss_pred ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc-CcEEEEE-CCCCEEEEEhhHcc-----eeeE
Confidence 334567777 7888888888999974223333234432 223444433 4444444 45589999999987 5555
Q ss_pred eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc-------ceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591 209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV-------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKS 281 (353)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 281 (353)
+.... |..+.|++++.+++..+.+ .+.+++...... ..........-...|.+..|.++.++-.... .
T Consensus 142 i~v~~---vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~ 216 (443)
T PF04053_consen 142 IDVSA---VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-H 216 (443)
T ss_dssp ESS-E----EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-E
T ss_pred EecCC---CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-e
Confidence 55432 4899999999999988866 577776544300 0001111111245666777776655444444 5
Q ss_pred EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
++. +-.++ ...+..-..++.=+...|. .+.+.....|+.|..+.+.
T Consensus 217 lkY--l~~Ge----~~~i~~ld~~~yllgy~~~----~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 217 LKY--LVNGE----TGIIAHLDKPLYLLGYLPK----ENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE--EETTE----EEEEEE-SS--EEEEEETT----TTEEEEE-TT--EEEEE--
T ss_pred EEE--EEcCC----cceEEEcCCceEEEEEEcc----CCEEEEEECCCCEEEEEEC
Confidence 655 33332 1122222456777788886 6688888899999888765
No 344
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.15 E-value=0.0017 Score=57.15 Aligned_cols=193 Identities=16% Similarity=0.223 Sum_probs=111.2
Q ss_pred EEEEeC-CeEEEecCC------CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcCCCc-----EEEEeCCCC
Q 018591 133 CLTVYN-GLIYSGSWD------KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASADGK-----IKAWGKELG 198 (353)
Q Consensus 133 ~~~~~~-~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~dg~-----i~iwd~~~~ 198 (353)
+++..+ ...++|+.| ..+..||..+.+-. ..+.............+...++|+.||. +-.||..+.
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC
Confidence 444444 677888888 35778887765522 2232222222223335557888888864 677888776
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC------cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF 272 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (353)
+-.. ......... ..-...-+|...++|+.++ .+..||..++ .|..................++.+
T Consensus 407 ~W~~---va~m~~~r~---~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~~~~i 478 (571)
T KOG4441|consen 407 KWTP---VAPMLTRRS---GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVLNGKI 478 (571)
T ss_pred cccc---cCCCCccee---eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEECCEE
Confidence 5221 111111111 1122223577778887554 5678888876 344444444444444566678889
Q ss_pred EEEecCCCe-----EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC-----eEEEEEcCCCC
Q 018591 273 LCSGSADKS-----IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK-----SLRVWWVSKQS 340 (353)
Q Consensus 273 l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~ 340 (353)
.+.||.|+. |..||..+.+ +..+..+......+-...+. +...+.|+.|| +|..||..+.+
T Consensus 479 YvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g~~~~~------~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 479 YVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVGVVVLG------GKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEECCccCCCccceEEEEcCCCCc-eeEcccCccccccccEEEEC------CEEEEEecccCccccceeEEcCCCCCc
Confidence 999998763 7778887743 33443344333333333333 67888898886 56667655543
No 345
>PHA02713 hypothetical protein; Provisional
Probab=98.14 E-value=0.00079 Score=59.29 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=83.4
Q ss_pred EEeCCeEEEecCCC-----cEEEEEcCCce--eeeeccccCcceEEEEEeCCeEEEEcCCC-------------------
Q 018591 135 TVYNGLIYSGSWDK-----TLKVWRVADLK--CLESIKAHDDAVNGLVASKGIVYSASADG------------------- 188 (353)
Q Consensus 135 ~~~~~~l~~~~~dg-----~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~l~~~~~dg------------------- 188 (353)
.......+.|+.++ .+..||..+.+ .+..+.........+...+...+.|+.++
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 33346667777654 47889987643 22222222222222333555666666542
Q ss_pred ----cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC------CcEEEeeccc-cccceeeeeecc
Q 018591 189 ----KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD------GFVMGWEGNV-EIVRWKLACETK 257 (353)
Q Consensus 189 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~ 257 (353)
.+..||..+.+-.. ...+...... .+++ .-+++..+.|+.+ ..+..||..+ + .|.....+.
T Consensus 429 ~~~~~ve~YDP~td~W~~---v~~m~~~r~~--~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~ 500 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWET---LPNFWTGTIR--PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTE 500 (557)
T ss_pred cccceEEEECCCCCeEee---cCCCCccccc--CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccC
Confidence 46778887765211 1111111111 1222 2245666667654 2467888887 4 355555666
Q ss_pred ccceeEEEEEEcCcEEEEecCCC--eEEEEecCCCc
Q 018591 258 AHEMAVLCVCLVGEFLCSGSADK--SIGIWKREAFG 291 (353)
Q Consensus 258 ~~~~~v~~~~~~~~~l~~~~~dg--~i~iw~~~~~~ 291 (353)
...........++.+.++|+.++ .+..||..+.+
T Consensus 501 ~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 501 SRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 55556666667899999999888 77888887754
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.00017 Score=63.20 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=59.3
Q ss_pred ceEEEEECC--cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591 18 SVSSLALCG--EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS 86 (353)
Q Consensus 18 ~v~~~~~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~ 86 (353)
.+++++|+. -.|+.|-.-|.+.+|...+.+.......|+.+|..+.|+ |+.++++..-|.+.+|..+..
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 356788883 367778888999999998888888888999999999998 899999999999999998743
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.10 E-value=0.0055 Score=53.63 Aligned_cols=270 Identities=11% Similarity=0.108 Sum_probs=138.3
Q ss_pred EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC--c--eeeEE-EEEeCCEEEEecC------CCcEEEEEcccCccce
Q 018591 22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG--D--GSVKA-VVTVGNKVFTAHQ------DSRIRVWKVSRSSENV 90 (353)
Q Consensus 22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~--~~v~~-~~~~~~~l~s~~~------dg~i~~w~~~~~~~~~ 90 (353)
+++.+..++.++.|+.|.-.|..+|+.+...... . ..+.+ -...++.++.+.. +|.|..+|.++++..-
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 3455667888889999999999999998776432 1 11211 1223556666542 6889999998887321
Q ss_pred eEEeecccccccee-eeecccceeEeecccceeeeeecCCceE-EEEEeC--CeEEEecCC----------------CcE
Q 018591 91 FRLVDTLPTTKDYL-GKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYN--GLIYSGSWD----------------KTL 150 (353)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~--~~l~~~~~d----------------g~v 150 (353)
. ....+...... ..............-....+..-...+. .+++.+ ++++.+..+ ..|
T Consensus 196 ~--~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 196 R--RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred e--ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 1 11111110000 0000000000000000000100111121 234444 445544411 267
Q ss_pred EEEEcCCceeeeeccccCcceEE---------EEE--eCC---eEEEEcCCCcEEEEeCCCCCcccc---cceeee----
Q 018591 151 KVWRVADLKCLESIKAHDDAVNG---------LVA--SKG---IVYSASADGKIKAWGKELGKSHCH---SLKGIL---- 209 (353)
Q Consensus 151 ~iwd~~~~~~~~~~~~~~~~v~~---------i~~--~~~---~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~---- 209 (353)
.-.|+++++....++.....+.. +.. .+. .++.+..+|.+.+.|.++++.... ......
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 88899999988777543222222 122 222 677899999999999998874200 000000
Q ss_pred e---------------------------ccCC-ceeeEEEEcCCCCeEEeecCC--------------------------
Q 018591 210 E---------------------------GHKD-VSLNSVVVSDDGKWVYGGGSD-------------------------- 235 (353)
Q Consensus 210 ~---------------------------~~~~-~~v~~~~~~~~~~~l~~~~~d-------------------------- 235 (353)
. +..+ ..-..++++|+..+++....+
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 0 0000 000225666766555544333
Q ss_pred -------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 236 -------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 236 -------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
|.+.-+|+.+++..++........... +...+.+++.+..+|.++.+|.++++.+...
T Consensus 434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~---l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV---LATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc---eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 346666777765555443322211111 2335667888888999999999999965544
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.07 E-value=1.3e-05 Score=41.93 Aligned_cols=37 Identities=38% Similarity=0.699 Sum_probs=32.5
Q ss_pred CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe
Q 018591 6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ 42 (353)
Q Consensus 6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd 42 (353)
++++..+.+|...|+++.|+ ++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 56778888999999999996 67999999999999996
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.01 E-value=0.0046 Score=49.46 Aligned_cols=231 Identities=13% Similarity=0.114 Sum_probs=121.3
Q ss_pred ECCcEEEEEeCCCcEEEEeCCC-ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591 24 LCGEFILSASQGKDIIVWQQPD-LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT 100 (353)
Q Consensus 24 ~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 100 (353)
-.++.|+.|..+| +.+++... ........ ...|..+... -+.+++-+ |+.+.+++++.-...........+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3588999999998 99999833 33333332 2238877776 34444443 49999999876542211100000000
Q ss_pred cceeeeecccceeEeecccceeeeeecCCceEEEE----EeCCeEEEecCCCcEEEEEcCCc-----eeeeeccccCcce
Q 018591 101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT----VYNGLIYSGSWDKTLKVWRVADL-----KCLESIKAHDDAV 171 (353)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v 171 (353)
.. ...-......+..++ ......++......|.+|..... +..+++.- ...+
T Consensus 81 ~~------------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~ 141 (275)
T PF00780_consen 81 RS------------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPP 141 (275)
T ss_pred cc------------------ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCc
Confidence 00 000002223344444 11133333444458888877542 34455543 5788
Q ss_pred EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-----------cCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591 172 NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-----------HKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 172 ~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 240 (353)
.+++|.++.++.|..+ ...+.|+.++. ....+.. ....++..+.. +++.+|++- +..-..
T Consensus 142 ~~i~~~~~~i~v~~~~-~f~~idl~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~f 212 (275)
T PF00780_consen 142 SSIAFLGNKICVGTSK-GFYLIDLNTGS-----PSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVF 212 (275)
T ss_pred EEEEEeCCEEEEEeCC-ceEEEecCCCC-----ceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEE
Confidence 9999988888877754 48888998765 2222111 11122123333 344555543 333333
Q ss_pred eeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591 241 WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
.|.... ......... ......+.+...+|++...++ |.||++.+++
T Consensus 213 v~~~G~-~~r~~~i~W---~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~ 258 (275)
T PF00780_consen 213 VNKNGE-PSRKSTIQW---SSAPQSVAYSSPYLIAFSSNS-IEVRSLETGE 258 (275)
T ss_pred EcCCCC-cCcccEEEc---CCchhEEEEECCEEEEECCCE-EEEEECcCCc
Confidence 344332 111111111 224456666777888776654 9999999987
No 350
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.98 E-value=0.003 Score=55.63 Aligned_cols=226 Identities=14% Similarity=0.191 Sum_probs=125.8
Q ss_pred CcEEEEEeCCC------cEEEEeCCCceeeEE--eccCceeeEEEEEe-CCEEEEecCC-C-----cEEEEEcccCccce
Q 018591 26 GEFILSASQGK------DIIVWQQPDLRMFTK--FGHGDGSVKAVVTV-GNKVFTAHQD-S-----RIRVWKVSRSSENV 90 (353)
Q Consensus 26 ~~~l~s~~~dg------~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~-~~~l~s~~~d-g-----~i~~w~~~~~~~~~ 90 (353)
+.+++.|+.++ .+..+|..+++-... +..... -.+++.. +...++|+.| | .+..||....+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--- 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--- 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCc---
Confidence 66778887773 688888877643322 222222 3334443 6677788888 3 45667766654
Q ss_pred eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCc-----EEEEEcCCce--eeee
Q 018591 91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKT-----LKVWRVADLK--CLES 163 (353)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~--~~~~ 163 (353)
+..+..+.. ...............++|+.||. +..||..+.+ .+..
T Consensus 361 W~~~a~M~~---------------------------~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~ 413 (571)
T KOG4441|consen 361 WTPVAPMNT---------------------------KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP 413 (571)
T ss_pred eeccCCccC---------------------------ccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC
Confidence 222222221 11122223333467788888864 6677766543 2222
Q ss_pred ccccCcceEEEEEeCCeEEEEcCCC------cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591 164 IKAHDDAVNGLVASKGIVYSASADG------KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237 (353)
Q Consensus 164 ~~~~~~~v~~i~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 237 (353)
+...........+.+...++|+.++ ++..||..++.-.........+.. ..++ .-++...+.|+.|+.
T Consensus 414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a-~~~~~iYvvGG~~~~ 487 (571)
T KOG4441|consen 414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVA-VLNGKIYVVGGFDGT 487 (571)
T ss_pred CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-----ceEE-EECCEEEEECCccCC
Confidence 2221222222333555667777544 467888887763222222222221 1122 234667788887763
Q ss_pred -----EEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-----eEEEEecCCC
Q 018591 238 -----VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-----SIGIWKREAF 290 (353)
Q Consensus 238 -----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iw~~~~~ 290 (353)
|..||..+. .|............+-....++...++|+.|| +|..||..+.
T Consensus 488 ~~~~~VE~ydp~~~--~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 488 SALSSVERYDPETN--QWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CccceEEEEcCCCC--ceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 777888876 34555555555666666677888889998876 4666666553
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.96 E-value=0.0058 Score=48.89 Aligned_cols=231 Identities=16% Similarity=0.092 Sum_probs=127.0
Q ss_pred eCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE
Q 018591 65 VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY 142 (353)
Q Consensus 65 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~ 142 (353)
.++.|+.|..+| +.+++...... .... .+...|..+...+ +.++
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-~~~i--------------------------------~~~~~I~ql~vl~~~~~ll 51 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-PTRI--------------------------------LKLSSITQLSVLPELNLLL 51 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-ceeE--------------------------------eecceEEEEEEecccCEEE
Confidence 378899999888 88888822220 0111 2333488888888 5555
Q ss_pred EecCCCcEEEEEcCCceeeeec--------------cccCcceEEEE-E---eCCeEEEEcCCCcEEEEeCCCCCccccc
Q 018591 143 SGSWDKTLKVWRVADLKCLESI--------------KAHDDAVNGLV-A---SKGIVYSASADGKIKAWGKELGKSHCHS 204 (353)
Q Consensus 143 ~~~~dg~v~iwd~~~~~~~~~~--------------~~~~~~v~~i~-~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 204 (353)
+-+ |+.+.++++........- ......+...+ . .+...+......+|.+|...........
T Consensus 52 vLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~ 130 (275)
T PF00780_consen 52 VLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK 130 (275)
T ss_pred EEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccc
Confidence 554 599999998765443311 11233455555 1 2334444555568999888764211101
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec--------cccceeEEEEEEc-CcEEEE
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET--------KAHEMAVLCVCLV-GEFLCS 275 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~~-~~~l~~ 275 (353)
..+.+.-. . .+..++|. ++.++.|..++ ..+.|+.++....-+.... .....++..+..+ +.+|++
T Consensus 131 ~~ke~~lp-~-~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~ 205 (275)
T PF00780_consen 131 LLKEISLP-D-PPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC 205 (275)
T ss_pred eeEEEEcC-C-CcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE
Confidence 33333333 2 24888888 45677776554 8888888653221110000 0112234444444 455554
Q ss_pred ecCCCeEEEEecCCCcceE-EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCC
Q 018591 276 GSADKSIGIWKREAFGKLC-RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK 348 (353)
Q Consensus 276 ~~~dg~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 348 (353)
- |..-.+.|. .|+... ....+ ...+.++++.. .+|+..+.+ .|.||++.+++.++....+
T Consensus 206 ~--~~~g~fv~~-~G~~~r~~~i~W---~~~p~~~~~~~------pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 206 Y--DNIGVFVNK-NGEPSRKSTIQW---SSAPQSVAYSS------PYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred e--cceEEEEcC-CCCcCcccEEEc---CCchhEEEEEC------CEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 2 333333343 333211 11112 23566777764 477777665 4999999999988877654
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.91 E-value=2.6e-05 Score=40.73 Aligned_cols=37 Identities=35% Similarity=0.640 Sum_probs=32.3
Q ss_pred EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
....+..|...|.++.|.+. +.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPD----GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCC----CCEEEEecCCCeEEEcC
Confidence 34456678889999999998 88999999999999996
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.013 Score=50.98 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=62.1
Q ss_pred CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccccccce--------eeeeecc
Q 018591 187 DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRW--------KLACETK 257 (353)
Q Consensus 187 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~--------~~~~~~~ 257 (353)
++.|.+.|.++...........+.... .+ ..+.++|||+++++++. +..+.++|+...+..+ ....+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sP-HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NP-HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-Cc-cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 567889998871000001333333332 23 88999999998876654 8899999998753211 1122222
Q ss_pred cccee-EEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591 258 AHEMA-VLCVCLVGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 258 ~~~~~-v~~~~~~~~~l~~~~~dg~i~iw~~~~ 289 (353)
...++ -+.+..+|+...+-.-|..|..||+..
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12222 344555577778888899999999875
No 354
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0091 Score=46.26 Aligned_cols=242 Identities=15% Similarity=0.067 Sum_probs=148.8
Q ss_pred ceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591 56 DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT 135 (353)
Q Consensus 56 ~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 135 (353)
.+.+..+.+++++.+.+..+.-+++.|+.+..... .+..+ .-.+--.++.
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~--~~~~l----------------------------nt~gyaygv~ 135 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT--LIGFL----------------------------NTDGYAYGVY 135 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcc--eeccc----------------------------cCCceEEEEE
Confidence 45666777889999999999999999998875211 11111 1124456677
Q ss_pred EeCCeEEEecCCCcEEEEEcCCc---eeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeecc
Q 018591 136 VYNGLIYSGSWDKTLKVWRVADL---KCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGH 212 (353)
Q Consensus 136 ~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 212 (353)
.+.++..++..|.-+.+.|+.+. ....++......-..++.++++-..+..|+-+.+-|+.+... +...-...
T Consensus 136 vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~s----Pvli~~~n 211 (370)
T COG5276 136 VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHS----PVLIGSYN 211 (370)
T ss_pred ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCC----CeEEEEEe
Confidence 77788888887777888888653 334455544555578888999999999999999999987651 22221222
Q ss_pred CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591 213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
.+.-+.++..+++..+++... .-+.+-|.......+.+-.........+..+...+++......+.-+.+-|+.+...
T Consensus 212 ~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 212 TGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred cCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence 232347778887766665543 336777776653322222222222333444566788888888888888888887655
Q ss_pred eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
+.....+......-..+..+ +.++..+..+ ...+-+....+
T Consensus 290 pfl~ss~~t~g~~a~gi~ay------~~y~yiadkn-~g~vV~~s~~s 330 (370)
T COG5276 290 PFLSSSLDTAGYQAAGIRAY------GNYNYIADKN-TGAVVDASPPS 330 (370)
T ss_pred CchhccccCCCccccceEEe------cCeeEeccCC-ceEEEeCCChh
Confidence 43333333222233444444 3455555544 44445555443
No 355
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.76 E-value=0.012 Score=46.45 Aligned_cols=203 Identities=12% Similarity=0.136 Sum_probs=116.7
Q ss_pred EEEEeC---CeEEEecCCCc-EEEEEcCCceeeeeccccCcce--EEEEEe-CC-eEEEE-----cCCCcEEEEeCCCCC
Q 018591 133 CLTVYN---GLIYSGSWDKT-LKVWRVADLKCLESIKAHDDAV--NGLVAS-KG-IVYSA-----SADGKIKAWGKELGK 199 (353)
Q Consensus 133 ~~~~~~---~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~i~~~-~~-~l~~~-----~~dg~i~iwd~~~~~ 199 (353)
.++.+| ..++.+-.-|. ..+||..+++....+....+.- -.-.|+ ++ +|++. ...|.|-+||....-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 344555 45555655554 6789999988887765433221 123453 33 55554 335889999998332
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecC------------------CCcEEEeeccccccceeeeeeccccce
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS------------------DGFVMGWEGNVEIVRWKLACETKAHEM 261 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~ 261 (353)
.....+..+.-.+ ..+.+.||++.|+++.. +..+.+.|..++....+.......|..
T Consensus 89 ----~ri~E~~s~GIGP-Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 89 ----RRIGEFPSHGIGP-HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred ----EEEeEecCCCcCh-hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 2566677777666 88999999987777632 123444455555322221111133556
Q ss_pred eEEEEEEc--CcEEEEecCCC-------eEEEEecCCCcceEEec----cccCCCcCeEEEEeecCCCCCCeEE-EEccC
Q 018591 262 AVLCVCLV--GEFLCSGSADK-------SIGIWKREAFGKLCRVG----AITGHEGPVKCLQASPNAVGGGFLL-YSGSL 327 (353)
Q Consensus 262 ~v~~~~~~--~~~l~~~~~dg-------~i~iw~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~l-~s~~~ 327 (353)
.+..++.+ |..++..-..| -|.+++... .+..+. ....-.+.+-+|+++++ +.++ +|+=.
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~----g~~ia~tsPr 237 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRD----GRLIAVTSPR 237 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCC----CCEEEEECCC
Confidence 66666665 33333332222 233333322 111111 12234567899999998 7655 55666
Q ss_pred CCeEEEEEcCCCCCccccc
Q 018591 328 DKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 328 dg~i~iw~~~~~~~~~~~~ 346 (353)
-|.+.+||..+++.+....
T Consensus 238 Gg~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVP 256 (305)
T ss_pred CCEEEEEECCCCCEeeccc
Confidence 7899999999988766543
No 356
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.73 E-value=0.029 Score=51.14 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=45.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCcee--------eEEEEE------------------eCCEEEEecCCCcEE
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS--------VKAVVT------------------VGNKVFTAHQDSRIR 79 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~------------------~~~~l~s~~~dg~i~ 79 (353)
+..|+.++.++.|.-.|..+|+.+..+...... ...+.+ .++.++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 667888888999999999999999887543211 112222 134788888999999
Q ss_pred EEEcccCc
Q 018591 80 VWKVSRSS 87 (353)
Q Consensus 80 ~w~~~~~~ 87 (353)
-.|.++++
T Consensus 274 ALDA~TGk 281 (764)
T TIGR03074 274 ALDADTGK 281 (764)
T ss_pred EEECCCCC
Confidence 99988887
No 357
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.014 Score=45.32 Aligned_cols=277 Identities=14% Similarity=0.102 Sum_probs=163.4
Q ss_pred CceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEecc--CceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 17 GSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGH--GDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
+-+..+.+++++...+..+.-++|.|+.+.+....+.. ..+--.++..+|++...+..|.-+.+.|+.+.+.....-.
T Consensus 87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred hhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 44556677789999999989999999877654333321 1255667777799999998777788899987764332222
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce---eeeeccccCcce
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAV 171 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v 171 (353)
.. .....-..++.+.++...+..|+-+.+-|+.+.. .+.... ....+
T Consensus 167 ya-----------------------------~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~ 216 (370)
T COG5276 167 YA-----------------------------LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGT 216 (370)
T ss_pred ec-----------------------------cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCce
Confidence 11 2223335677888888888899999999987543 233322 23367
Q ss_pred EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591 172 NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK 251 (353)
Q Consensus 172 ~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 251 (353)
.++..++++....-.+--+.+-|..+.+. .......+......++.+.. .+++......+.-+.+-|+...... .
T Consensus 217 ~sv~vsdnr~y~vvy~egvlivd~s~~ss--p~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp-f 291 (370)
T COG5276 217 YSVSVSDNRAYLVVYDEGVLIVDVSGPSS--PTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP-F 291 (370)
T ss_pred EEEEecCCeeEEEEcccceEEEecCCCCC--ceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCC-c
Confidence 78888888666666666677778776651 01112222222211122233 4566666666666777777664211 1
Q ss_pred eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
+...+.........+...+.++..+..+ ...+-+....+ ......+-...+.+.+.+-+ .+.+.+...++-+
T Consensus 292 l~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~----~q~~y~~d~~~gl 363 (370)
T COG5276 292 LSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPS---MMDKRPGRPTIGQSCDVSVD----TQIIYSTDYNGGL 363 (370)
T ss_pred hhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChh---hcccccCcceEeeecceEEE----eeEEEEeecCCCE
Confidence 1112221222334445556666666555 44555554433 12222222233444444444 6788888999999
Q ss_pred EEEEc
Q 018591 332 RVWWV 336 (353)
Q Consensus 332 ~iw~~ 336 (353)
.+|+.
T Consensus 364 ~i~~~ 368 (370)
T COG5276 364 SIIEY 368 (370)
T ss_pred EEEEe
Confidence 99985
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.69 E-value=0.014 Score=45.21 Aligned_cols=201 Identities=10% Similarity=0.013 Sum_probs=106.3
Q ss_pred ecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-eCCeEEEEc-CCCcEEEEeCCCCC
Q 018591 126 EHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-SKGIVYSAS-ADGKIKAWGKELGK 199 (353)
Q Consensus 126 ~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~~~~l~~~~-~dg~i~iwd~~~~~ 199 (353)
+-...+..++|+| .++++....+.|..++. +++.++.+.-. .+..-.|++ .++.++... .++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4556799999998 47777888889988886 57887776543 355778888 555555544 58899999885432
Q ss_pred ccc-ccceee----eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc--cccceeeee--e---ccccceeEEEEE
Q 018591 200 SHC-HSLKGI----LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV--EIVRWKLAC--E---TKAHEMAVLCVC 267 (353)
Q Consensus 200 ~~~-~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--~---~~~~~~~v~~~~ 267 (353)
... ...... +......-+..++|+|.++.|+++-...-..+|.+.. ......... . .........+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 110 000111 1111222248999999888888887777777777764 111100000 0 111222344555
Q ss_pred Ec---CcEEEEecCCCeEEEEecCCCcceEEeccccC-C------CcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 268 LV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITG-H------EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 268 ~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h------~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
++ +.+++.+..+..|..+| ..++.. ....+.. . -...-.|+|.++ |.+.+++ +-+...++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~-~~~~L~~g~~gl~~~~~QpEGIa~d~~----G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVV-SSLSLDRGFHGLSKDIPQPEGIAFDPD----GNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EE-EEEE-STTGGG-SS---SEEEEEE-TT------EEEEE-TTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEE-EEEEeCCcccCcccccCCccEEEECCC----CCEEEEc-CCceEEEe
Confidence 54 67888889999999999 444422 2222322 1 124678999998 7665555 45444443
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.02 Score=48.46 Aligned_cols=176 Identities=15% Similarity=0.097 Sum_probs=93.9
Q ss_pred cEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee----eEEEEc
Q 018591 149 TLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL----NSVVVS 223 (353)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~ 223 (353)
.|.+|+. .|+.+..+.-..+.+.++.| .+..|+....||.+++||+.... ........ ....++ ....+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i--~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEI--EEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhc--cccCcccccccccccC
Confidence 5999985 57777776555589999999 55588888999999999986332 11111111 111111 112333
Q ss_pred CCCCeEEeecCCCcEEEeeccccccceeeeeeccc-------cce--eEEEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591 224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-------HEM--AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC 294 (353)
Q Consensus 224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~--~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 294 (353)
.+| ++.-..++.+.+.+-............... ... .+..+..+....+....++.+.+.+-...+
T Consensus 137 ~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--- 211 (410)
T PF04841_consen 137 KNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--- 211 (410)
T ss_pred CCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc---
Confidence 345 333333444444432222101011101111 000 111122233344444455556544433211
Q ss_pred EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
. +. ..+++..++.||+ ++++|.-..+|.+.+.+..-.+..
T Consensus 212 ~---i~-~~~~i~~iavSpn----g~~iAl~t~~g~l~v~ssDf~~~~ 251 (410)
T PF04841_consen 212 Q---ID-SDGPIIKIAVSPN----GKFIALFTDSGNLWVVSSDFSEKL 251 (410)
T ss_pred c---cc-CCCCeEEEEECCC----CCEEEEEECCCCEEEEECccccee
Confidence 1 11 2468999999999 999999999999988876544433
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.67 E-value=0.0018 Score=58.14 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=94.2
Q ss_pred cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-----CCCeEEeecCCCcEEEeeccccccceeeee-e--c
Q 018591 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-----DGKWVYGGGSDGFVMGWEGNVEIVRWKLAC-E--T 256 (353)
Q Consensus 185 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~--~ 256 (353)
.....|+-.|+..++ +...+..+...+|..++-.. +....+.|-.+..+..||.+.... ++.. . .
T Consensus 501 ~~~~~ly~mDLe~GK-----VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~~~k~ 573 (794)
T PF08553_consen 501 NNPNKLYKMDLERGK-----VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDSQSKQ 573 (794)
T ss_pred CCCCceEEEecCCCc-----EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeeccccc
Confidence 456789999999998 88888888765434443221 123456777788899999987531 1111 1 1
Q ss_pred cccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 257 KAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 257 ~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
........|++-. ..+||+|+.+|.||+||-- +.+ .-..+.+-..+|..|..+.| |++++..+.. .+.+++
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~--AKT~lp~lG~pI~~iDvt~D----GkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR--AKTALPGLGDPIIGIDVTAD----GKWILATCKT-YLLLID 645 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh--hhhcCCCCCCCeeEEEecCC----CcEEEEeecc-eEEEEE
Confidence 1223345666665 6699999999999999943 332 33345677889999999999 9988877644 677777
Q ss_pred cC
Q 018591 336 VS 337 (353)
Q Consensus 336 ~~ 337 (353)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
No 361
>PHA03098 kelch-like protein; Provisional
Probab=97.63 E-value=0.02 Score=50.68 Aligned_cols=191 Identities=10% Similarity=0.053 Sum_probs=95.7
Q ss_pred EEEeCCeEEEecCCC------cEEEEEcCCceeeee--ccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCc
Q 018591 134 LTVYNGLIYSGSWDK------TLKVWRVADLKCLES--IKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKS 200 (353)
Q Consensus 134 ~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 200 (353)
+......++.|+.++ .+..||..+.+-... +.........+...+..++.|+.+ ..+..||..+.+-
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 333345666666542 577888776554221 111112222333355566677765 3467788776652
Q ss_pred ccccceeeeeccCCceeeEEEEcCCCCeEEeecCC------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591 201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274 (353)
Q Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 274 (353)
.. ...+...... .+++ .-+++..+.|+.+ ..+..||..++. |..............+...++.+++
T Consensus 371 ~~---~~~lp~~r~~--~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv 442 (534)
T PHA03098 371 RE---EPPLIFPRYN--PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYV 442 (534)
T ss_pred ee---CCCcCcCCcc--ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEE
Confidence 11 1111111111 1222 2346666666632 357888887652 3333332222222334455677777
Q ss_pred EecCC--------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCC
Q 018591 275 SGSAD--------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQ 339 (353)
Q Consensus 275 ~~~~d--------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 339 (353)
.|+.+ ..+.+||..+.+ +..+..+.........+.+ + +++++.||.+ ..+.+||..+.
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--N----NKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--C----CEEEEEcCCcCCcccceeEEEeCCCC
Confidence 77653 238889987643 2233322211111122222 4 7788888765 46888887765
No 362
>PHA03098 kelch-like protein; Provisional
Probab=97.57 E-value=0.037 Score=49.09 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=72.2
Q ss_pred EeCCeEEEecCC-----CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcCC------CcEEEEeCCCCCccc
Q 018591 136 VYNGLIYSGSWD-----KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASAD------GKIKAWGKELGKSHC 202 (353)
Q Consensus 136 ~~~~~l~~~~~d-----g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~d------g~i~iwd~~~~~~~~ 202 (353)
.....++.|+.+ ..+..||..+.+-. ..+.............+..++.|+.+ ..+..||..+.+-..
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 334666667654 34777887654322 12211111112222244455666632 357888987664211
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--------cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 274 (353)
.......... .++ ...++...+.|+.++ .+.+||..++. |...............+..++.+++
T Consensus 421 ---~~~~p~~r~~--~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv 492 (534)
T PHA03098 421 ---GSPLPISHYG--GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIYV 492 (534)
T ss_pred ---cCCCCccccC--ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEEE
Confidence 1111111111 122 223456666666432 37888887763 3333222222222233445777777
Q ss_pred EecCC-----CeEEEEecCCC
Q 018591 275 SGSAD-----KSIGIWKREAF 290 (353)
Q Consensus 275 ~~~~d-----g~i~iw~~~~~ 290 (353)
.|+.+ +.+.+||..+.
T Consensus 493 ~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 493 VGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EcCCcCCcccceeEEEeCCCC
Confidence 77754 47888988764
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.54 E-value=0.013 Score=49.74 Aligned_cols=143 Identities=17% Similarity=0.050 Sum_probs=76.4
Q ss_pred cCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591 167 HDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 167 ~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
.......+.++| +.+++.+.||.-.++.....+ .... +.. ...+|.+.++ +++-...+.|.++.--.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r-------~k~~---G~g-~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWR-------NKAF---GSG-LSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTE-------EEEE---EE--SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCc-------cccc---Cce-eEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 345567888844 456666788888888843332 1111 112 6788888554 66666688899963323
Q ss_pred cccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 246 EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
+... ..+.. ...+..+-. |.+|...+.+ .|.+||..+++ .+..+.. .+|..+.|+++ +++++-.
T Consensus 99 ~~~~----k~i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~---~i~~i~v--~~vk~V~Ws~~----g~~val~ 162 (443)
T PF04053_consen 99 NEVV----KSIKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK---LIRRIDV--SAVKYVIWSDD----GELVALV 162 (443)
T ss_dssp E-TT----------SS-EEEEE--SSSEEEEETT-EEEEE-TTT-----EEEEESS---E-EEEEE-TT----SSEEEEE
T ss_pred cccc----eEEcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHcc---eeeEEec--CCCcEEEEECC----CCEEEEE
Confidence 2110 11111 112333333 7877777665 79999999987 4544442 24899999999 9999999
Q ss_pred cCCCeEEEEEcCC
Q 018591 326 SLDKSLRVWWVSK 338 (353)
Q Consensus 326 ~~dg~i~iw~~~~ 338 (353)
+.+ .+.|++...
T Consensus 163 t~~-~i~il~~~~ 174 (443)
T PF04053_consen 163 TKD-SIYILKYNL 174 (443)
T ss_dssp -S--SEEEEEE-H
T ss_pred eCC-eEEEEEecc
Confidence 866 577776543
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00052 Score=58.20 Aligned_cols=71 Identities=20% Similarity=0.171 Sum_probs=59.9
Q ss_pred EEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE-EEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591 266 VCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK-CLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 266 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 344 (353)
+.|.-.++|.+..+|.|.+..++ .+ ++.++.-|...++ +++|.|| |+.||.|-.||+|++-|++++..+.+
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~q---Rlwtip~p~~~v~~sL~W~~D----GkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQ---RLWTIPIPGENVTASLCWRPD----GKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cc---eeEeccCCCCccceeeeecCC----CCEEEEEecCCeEEEEEccCCCceec
Confidence 33346689999999999999987 44 5666766666777 9999999 99999999999999999999988876
No 365
>PHA02790 Kelch-like protein; Provisional
Probab=97.45 E-value=0.049 Score=47.43 Aligned_cols=183 Identities=10% Similarity=0.056 Sum_probs=92.9
Q ss_pred CeEEEecCCC-----cEEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC--CcEEEEeCCCCCcccccceeee
Q 018591 139 GLIYSGSWDK-----TLKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD--GKIKAWGKELGKSHCHSLKGIL 209 (353)
Q Consensus 139 ~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~ 209 (353)
..+++|+.++ .+..||..+.+-.. .+.........+...+...+.|+.+ ..+..||..+++-. ....+
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~---~~~~l 349 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV---NMPSL 349 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEE---ECCCC
Confidence 4566776543 46778877654322 2222122222223344455666653 35777887655311 11111
Q ss_pred eccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEe
Q 018591 210 EGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWK 286 (353)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~ 286 (353)
...... .++ ..-+++..+.|+.++ .+..||.+++ .|..................++.+.+.|+ .+.+||
T Consensus 350 ~~~r~~--~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~yd 421 (480)
T PHA02790 350 LKPRCN--PAV-ASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYC 421 (480)
T ss_pred CCCCcc--cEE-EEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ceEEec
Confidence 111111 112 223566777777553 4678888765 34433333322233334456677777774 477899
Q ss_pred cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCC
Q 018591 287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQ 339 (353)
Q Consensus 287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 339 (353)
.++. .+..+..+.........+.+ + +++.+.||.+ ..+..||..+.
T Consensus 422 p~~~-~W~~~~~m~~~r~~~~~~v~--~----~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSN-TWTLIDDPIYPRDNPELIIV--D----NKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCC-cEeEcCCCCCCccccEEEEE--C----CEEEEECCcCCCcccceEEEEECCCC
Confidence 8764 34344443322222222222 3 7888888865 35777776654
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.45 E-value=0.00058 Score=37.18 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=29.9
Q ss_pred CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
...|..++|+|. .++||.++.||.|.++.+ +.+.
T Consensus 11 ~~~v~~~~w~P~----mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPT----MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCC----CCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999 999999999999999999 4443
No 367
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.44 E-value=0.039 Score=43.76 Aligned_cols=234 Identities=14% Similarity=0.124 Sum_probs=118.0
Q ss_pred CcEEEEEeCCC-cEEEEeCCCceeeEEeccCceeeE--EEEEe--CCEEEEe-----cCCCcEEEEEcccCccceeEEee
Q 018591 26 GEFILSASQGK-DIIVWQQPDLRMFTKFGHGDGSVK--AVVTV--GNKVFTA-----HQDSRIRVWKVSRSSENVFRLVD 95 (353)
Q Consensus 26 ~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~--~~~l~s~-----~~dg~i~~w~~~~~~~~~~~~~~ 95 (353)
+..++.+-.-| ...+||..+++....+....+.-. --.|+ |++|++. ...|.|-|||...+ +..+.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~----~~ri~ 92 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG----YRRIG 92 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC----cEEEe
Confidence 44555555544 466888888888877754333221 12344 7888875 34588999999832 22333
Q ss_pred ccccccc--eeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeee--c--c
Q 018591 96 TLPTTKD--YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLES--I--K 165 (353)
Q Consensus 96 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~--~--~ 165 (353)
.++.... .-....+....+.... + .|..+| ..|=..+.+-.+...|..+++.+.+ + .
T Consensus 93 E~~s~GIGPHel~l~pDG~tLvVAN----------G---GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 93 EFPSHGIGPHELLLMPDGETLVVAN----------G---GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred EecCCCcChhhEEEcCCCCEEEEEc----------C---CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 3332211 0001111110111000 0 011111 1233334556677778888887766 4 3
Q ss_pred ccCcceEEEEE-eCCeEEEEcC-CC-------cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CC
Q 018591 166 AHDDAVNGLVA-SKGIVYSASA-DG-------KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SD 235 (353)
Q Consensus 166 ~~~~~v~~i~~-~~~~l~~~~~-dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 235 (353)
.|...|..+++ .++.++.+.. .| -+-+++....-............-...+ -+|++++++.++++.+ ..
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~-gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI-GSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce-EEEEEeCCCCEEEEECCCC
Confidence 37778999998 4444444432 11 1233332221100000001112222344 8999999998776555 56
Q ss_pred CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEE
Q 018591 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGI 284 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i 284 (353)
+.+.+||..++ .+..... -..++.+++. +.++++.+ .|.+..
T Consensus 239 g~~~~~d~~tg----~~~~~~~--l~D~cGva~~~~~f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 239 GRVAVWDAATG----RLLGSVP--LPDACGVAPTDDGFLVSSG-QGQLIR 281 (305)
T ss_pred CEEEEEECCCC----CEeeccc--cCceeeeeecCCceEEeCC-CccEEE
Confidence 78999999988 3333322 2335556664 33455544 454433
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.048 Score=43.94 Aligned_cols=103 Identities=11% Similarity=0.042 Sum_probs=59.7
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccc--cccce-eeeeecccc--ceeEEEEEEcCcEEEEecCC
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNV--EIVRW-KLACETKAH--EMAVLCVCLVGEFLCSGSAD 279 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~-~~~~~~~~~--~~~v~~~~~~~~~l~~~~~d 279 (353)
.+....+-..+ +.++||||++.++.... .+.|.-|++.. ..... ......... ..--.++.-+|.+-+++..+
T Consensus 155 ~~l~~~~~~~~-NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 155 VRLLDDDLTIP-NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred EEeecCcEEec-CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 34444434444 89999999988777655 47888887763 11000 111111111 12234555567776555454
Q ss_pred C-eEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 280 K-SIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 280 g-~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
| .|..|+.+ ++ .+..+.-....+++++|--
T Consensus 234 g~~v~~~~pd-G~---l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 234 GGRVVRFNPD-GK---LLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CceEEEECCC-Cc---EEEEEECCCCCCccceEeC
Confidence 4 89999988 66 3444444446788888874
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0053 Score=55.79 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=53.7
Q ss_pred CceEEEEECCcEEEEEeCCCcEEEEeCCCc-eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCc
Q 018591 17 GSVSSLALCGEFILSASQGKDIIVWQQPDL-RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
..+.+.+.-+..++.|++.|.|-..|.... .....-..-.++|++++|+ |..++.|-.+|.|.+||...+.
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 445555555778899999999999887543 1112223347899999998 8889999999999999998865
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0015 Score=55.51 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=70.9
Q ss_pred cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceE-EEEE-eC-CeEEEEcCCCcEEEEeCCCCCcc
Q 018591 127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN-GLVA-SK-GIVYSASADGKIKAWGKELGKSH 201 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~i~~-~~-~~l~~~~~dg~i~iwd~~~~~~~ 201 (353)
-...|.-+.|+| +++|.+..+|.|.+..++ .+.+.++..|...++ +++| ++ ..++.|-.||+|++.|...+.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~-- 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG-- 95 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC--
Confidence 345678899999 999999999999999987 888899987777777 9999 33 388999999999999999887
Q ss_pred cccceeeeeccCCceeeEEEEcC
Q 018591 202 CHSLKGILEGHKDVSLNSVVVSD 224 (353)
Q Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~ 224 (353)
............|.++.|+|
T Consensus 96 ---~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 ---RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ---ceeccccccccchheeeccc
Confidence 33332222223346677763
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.00051 Score=50.79 Aligned_cols=142 Identities=18% Similarity=0.158 Sum_probs=78.9
Q ss_pred CeEEEecCCCcEEEEEcCCceeeee-ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLES-IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL 217 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (353)
..+..-+.||.|.-++++..+.... -..+... ..+.--...++.|+.+|.|.+|+...... ...........+.
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESID 105 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccch----HHHhhhcccccce
Confidence 3455667788888888764332111 1112211 22222455899999999999998873321 1222222222222
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeE--EEEEEcCcEEEEe--cCCCeEEEEecCC
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAV--LCVCLVGEFLCSG--SADKSIGIWKREA 289 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~~~--~~dg~i~iw~~~~ 289 (353)
..+.--.++.+..+++.+|.|+.|++... +.......|. .+. ..+.-++++++.. +.|..++.|++..
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~----k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPN----KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccC----ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 33444456678999999999999999876 3333333333 111 1122235555555 5666666666654
No 372
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.34 E-value=0.082 Score=46.37 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=49.9
Q ss_pred EEEEEEcCcEEEEec-CCCeEEEEecCCCcce---------EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591 263 VLCVCLVGEFLCSGS-ADKSIGIWKREAFGKL---------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332 (353)
Q Consensus 263 v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~ 332 (353)
-..++|+|+++++++ .+++|.+.|+.+.+.. ..+.+..- .......+|+++ |....|-..|..|.
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~----G~aytslf~dsqv~ 399 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGR----GNAYTTLFLDSQIV 399 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCC----CCEEEeEeecceeE
Confidence 366778888776655 5999999999875521 01112211 123456788888 88999999999999
Q ss_pred EEEcCC
Q 018591 333 VWWVSK 338 (353)
Q Consensus 333 iw~~~~ 338 (353)
.|++.+
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999886
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0078 Score=50.46 Aligned_cols=142 Identities=11% Similarity=0.192 Sum_probs=93.2
Q ss_pred EEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---------CCEEEEecCCCcEEEEEcccCccceeEEeeccc
Q 018591 28 FILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLP 98 (353)
Q Consensus 28 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~ 98 (353)
+|.++.....++--|++.|+.+.+...+.. |.-+.+. ...-+.|-.|..|.-||.+-...........-.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455666667888889999999999988766 4333332 223345556778888998744321111110000
Q ss_pred cccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-
Q 018591 99 TTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA- 176 (353)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~- 176 (353)
........|++... +++++|+.+|.|++||--.......+++-..+|..+..
T Consensus 427 --------------------------y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 427 --------------------------YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred --------------------------cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence 02234566777666 99999999999999996323334456777899999998
Q ss_pred eCCeEEEEcCCCcEEEEeCC
Q 018591 177 SKGIVYSASADGKIKAWGKE 196 (353)
Q Consensus 177 ~~~~l~~~~~dg~i~iwd~~ 196 (353)
.++..+.|..+..+.+.++.
T Consensus 481 adGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 481 ADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccCcEEEEecccEEEEEEEe
Confidence 55655556667788887764
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0076 Score=50.50 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=94.7
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-------eEEeecCCCcEEEeeccccccc---
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-------WVYGGGSDGFVMGWEGNVEIVR--- 249 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~--- 249 (353)
++..+.....++-.|++.++ +...+..+.. |+-+.+.|+.+ .-+.|-.+..|.-||.+-....
T Consensus 348 il~~~~~~~~l~klDIE~GK-----IVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK-----IVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred EeeCCCCcCcceeeecccce-----eeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 45566666778888999998 7778877777 46777777643 2345667888999998854221
Q ss_pred eeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 250 WKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
+.....+.. .....|++-. ..++++|+.+|.||+||. .+.. .-..+.+-..+|..+..+.+ |++++..+..
T Consensus 421 ~~q~kqy~~-k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~--AKTAlPgLG~~I~hVdvtad----GKwil~Tc~t 492 (644)
T KOG2395|consen 421 VVQSKQYST-KNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRR--AKTALPGLGDAIKHVDVTAD----GKWILATCKT 492 (644)
T ss_pred eeecccccc-ccccceeeecCCceEEEeecCCcEEeehh-hhhh--hhhcccccCCceeeEEeecc----CcEEEEeccc
Confidence 111111111 2233444443 669999999999999997 3332 23346778889999999999 8888777644
Q ss_pred CeEEEEEc
Q 018591 329 KSLRVWWV 336 (353)
Q Consensus 329 g~i~iw~~ 336 (353)
.+.+-++
T Consensus 493 -yLlLi~t 499 (644)
T KOG2395|consen 493 -YLLLIDT 499 (644)
T ss_pred -EEEEEEE
Confidence 5555554
No 375
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0012 Score=58.24 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=79.6
Q ss_pred eEEEEcCCCCeEEeec----CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce
Q 018591 218 NSVVVSDDGKWVYGGG----SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
+-..|+|...++++++ ..|.|.||-- ++.+..... .+-| ....|+.|..-.|+.|-.-|.+.+|...+.+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt--~P~h-atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-- 92 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVT--YPVH-ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-- 92 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCcccc--ccee-hhhhccChHHHHHhhccccceeEEEecCCce--
Confidence 5567888888887765 4578888843 332111111 1111 1124444445678888889999999988765
Q ss_pred EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591 294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 343 (353)
.-.....|..+|..+.|||+ |..|+++..-|.|.+|.......++
T Consensus 93 -~htv~~th~a~i~~l~wS~~----G~~l~t~d~~g~v~lwr~d~~g~~q 137 (1416)
T KOG3617|consen 93 -THTVVETHPAPIQGLDWSHD----GTVLMTLDNPGSVHLWRYDVIGEIQ 137 (1416)
T ss_pred -eeeeccCCCCCceeEEecCC----CCeEEEcCCCceeEEEEeeeccccc
Confidence 33334579999999999999 9999999999999999987544443
No 376
>PHA02790 Kelch-like protein; Provisional
Probab=97.16 E-value=0.11 Score=45.27 Aligned_cols=144 Identities=10% Similarity=0.027 Sum_probs=73.6
Q ss_pred EeCCeEEEecCC--CcEEEEEcCCce--eeeeccccCcceEEEEEeCCeEEEEcCCC---cEEEEeCCCCCcccccceee
Q 018591 136 VYNGLIYSGSWD--KTLKVWRVADLK--CLESIKAHDDAVNGLVASKGIVYSASADG---KIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 136 ~~~~~l~~~~~d--g~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~ 208 (353)
......+.|+.+ ..+..||..+.+ .+..+.............+...+.|+.++ .+..||.++.+-.....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~--- 393 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS--- 393 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC---
Confidence 344566666653 357888876543 22223211222222233555666666543 46778887664211111
Q ss_pred eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEE
Q 018591 209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIG 283 (353)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~ 283 (353)
+..... ...+..-+++..+.|+ .+.+||.+++ .|.....+............++++.+.||.+ ..+.
T Consensus 394 m~~~r~---~~~~~~~~~~IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 394 TYYPHY---KSCALVFGRRLFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred CCCccc---cceEEEECCEEEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEE
Confidence 111111 1111223455666663 5778998765 4444444443344444556678888888864 3466
Q ss_pred EEecCCC
Q 018591 284 IWKREAF 290 (353)
Q Consensus 284 iw~~~~~ 290 (353)
.||..+.
T Consensus 466 ~Yd~~~~ 472 (480)
T PHA02790 466 VYNNRTY 472 (480)
T ss_pred EEECCCC
Confidence 6776653
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0045 Score=56.23 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=72.6
Q ss_pred CcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591 168 DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 168 ~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 247 (353)
...+.+.+.....++.|+..|.+-..|....- .......+...+|++++|+.+|+.++.|-.+|.|.+||...++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 34455555566789999999999999887642 1123334445567999999999999999999999999999873
Q ss_pred cceeeeeeccccceeE----EEEEEc-CcEEEEecCCCeEEEEe
Q 018591 248 VRWKLACETKAHEMAV----LCVCLV-GEFLCSGSADKSIGIWK 286 (353)
Q Consensus 248 ~~~~~~~~~~~~~~~v----~~~~~~-~~~l~~~~~dg~i~iw~ 286 (353)
....+..+..+. .....+ +..+.++...|. +|.
T Consensus 164 ----~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 164 ----ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ----ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 333333333222 222223 445777777775 454
No 378
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.08 E-value=0.091 Score=40.87 Aligned_cols=200 Identities=11% Similarity=0.150 Sum_probs=101.7
Q ss_pred eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC-ceeeEEEEEe-CCEEEEe-cCCCcEEEEEc
Q 018591 10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV-GNKVFTA-HQDSRIRVWKV 83 (353)
Q Consensus 10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~s~-~~dg~i~~w~~ 83 (353)
+.+.+-.+.++.|+|+ +.++++....+.|...+. +|+.++.+.-. .+..-.|++. ++.++.. -.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3566666779999996 557777788889988886 57888777543 3456777776 4444444 45888999988
Q ss_pred ccCccce-eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC---
Q 018591 84 SRSSENV-FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD--- 157 (353)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~--- 157 (353)
....... ......+.. .....+...+-.++|++ +.|+++-...-..+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~l----------------------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISL----------------------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp ----TT--EEEEEEEE-------------------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred eccccccchhhceEEec----------------------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 5433110 111111100 00013566788999998 7777777776667776643
Q ss_pred ceeee--e------ccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---------Ccee
Q 018591 158 LKCLE--S------IKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---------DVSL 217 (353)
Q Consensus 158 ~~~~~--~------~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~v 217 (353)
...+. . .......+.++++++. +++....+..|..+|. +++ +...+.-.. ..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~-----~~~~~~L~~g~~gl~~~~~Qp- 224 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGR-----VVSSLSLDRGFHGLSKDIPQP- 224 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T-------EEEEEE-STTGGG-SS---SE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCC-----EEEEEEeCCcccCcccccCCc-
Confidence 11111 1 1123345678888433 7777778888888984 444 222222111 233
Q ss_pred eEEEEcCCCCeEEeecCCCcEEE
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i 240 (353)
..++|.++|++.+++ .-+..++
T Consensus 225 EGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 225 EGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp EEEEE-TT--EEEEE-TTTEEEE
T ss_pred cEEEECCCCCEEEEc-CCceEEE
Confidence 789999999765554 4443333
No 379
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.05 E-value=0.12 Score=41.70 Aligned_cols=153 Identities=12% Similarity=0.044 Sum_probs=80.4
Q ss_pred CeEEEecCCCcEEEEEcC-Cceeeee----ccccCcceE-EEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591 139 GLIYSGSWDKTLKVWRVA-DLKCLES----IKAHDDAVN-GLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE 210 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~-~~~~~~~----~~~~~~~v~-~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 210 (353)
+.+.+-+.||.+.-..+. .|+...+ |.....++. .-++ .++.++-.+.+|.|+--|+.............+.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 677888889999988887 4544322 111122222 2233 3346666888999999998876522111111111
Q ss_pred cc-------CCceeeEEEEcCCCCeEEeecC--------CC--cEEEeeccccccceeeeeeccc-cceeEEEEEEc-Cc
Q 018591 211 GH-------KDVSLNSVVVSDDGKWVYGGGS--------DG--FVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLV-GE 271 (353)
Q Consensus 211 ~~-------~~~~v~~~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~ 271 (353)
.. .+. ..-+++++..+.|++.-. |+ .|.++|+.+.+ .+..+.. +......++-+ ..
T Consensus 228 ~~e~~~~WrPGG-~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k----rv~Ri~l~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 228 DAEKADGWRPGG-WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK----RVARIPLEHPIDSIAVSQDDKP 302 (342)
T ss_dssp HHHHHTTEEE-S-SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE----EEEEEEEEEEESEEEEESSSS-
T ss_pred ccccccCcCCcc-eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe----EEEEEeCCCccceEEEccCCCc
Confidence 00 011 245788876655554321 22 57777888773 3333332 22223344444 33
Q ss_pred EEE-EecCCCeEEEEecCCCcceEEe
Q 018591 272 FLC-SGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 272 ~l~-~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
+|+ ....++.+.+||..+++....+
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 554 4567899999999999844443
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.77 E-value=0.43 Score=43.85 Aligned_cols=305 Identities=13% Similarity=0.131 Sum_probs=156.7
Q ss_pred cCceEEEEEC-----C---cEEEEEeCCCcEEEEe-CCCceeeEEe--cc--CceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591 16 VGSVSSLALC-----G---EFILSASQGKDIIVWQ-QPDLRMFTKF--GH--GDGSVKAVVTV--GNKVFTAHQDSRIRV 80 (353)
Q Consensus 16 ~~~v~~~~~~-----~---~~l~s~~~dg~v~vwd-~~~~~~~~~~--~~--~~~~v~~~~~~--~~~l~s~~~dg~i~~ 80 (353)
...|.|+.++ . ++++.|..+..+.+-- .++...+... .. -+..|....+. ..+|+++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3578888885 2 3888898877665543 3444433322 11 12234334443 678999999999988
Q ss_pred EEcccCccceeEE-eeccccccceeeeecccce--eEeecccceeeeeecCCc----------eEEEE-EeC----CeEE
Q 018591 81 WKVSRSSENVFRL-VDTLPTTKDYLGKFMKQSN--YVQTRRHHKRLWIEHADS----------ISCLT-VYN----GLIY 142 (353)
Q Consensus 81 w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------i~~~~-~~~----~~l~ 142 (353)
+.++......... ...+......+..+..... .......+.-++ .+.+. +..++ |+. +.++
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY-~~n~kLv~spls~kev~~~c~f~s~a~~d~l~ 688 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIY-SSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLA 688 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEE-ecCCcEEEeccchHHhhhhcccccccCCceEE
Confidence 7766543211111 0112222222222222211 222222333222 22221 11111 111 4455
Q ss_pred EecCCCcEEEEEcCCcee--eeeccccCcceEEEEEeCC--eEEEEcC-----------C---CcEEEEeCCCCCccccc
Q 018591 143 SGSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVASKG--IVYSASA-----------D---GKIKAWGKELGKSHCHS 204 (353)
Q Consensus 143 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~--~l~~~~~-----------d---g~i~iwd~~~~~~~~~~ 204 (353)
.+.. +.+++--++.-+. ++++.- ......+++.+. .+.+.+. . ..++++|-++-+
T Consensus 689 ~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~----- 761 (1096)
T KOG1897|consen 689 SANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE----- 761 (1096)
T ss_pred EecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee-----
Confidence 5543 5566666544221 223322 233445555332 2222211 1 125566655544
Q ss_pred ceeeeeccCC---ceeeEEEEcCC-CCeEEeecC----------CCcEEEeeccccccceeeeeeccccceeEEEE-EEc
Q 018591 205 LKGILEGHKD---VSLNSVVVSDD-GKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCV-CLV 269 (353)
Q Consensus 205 ~~~~~~~~~~---~~v~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~ 269 (353)
.....+.... ..+.++.|..| +.++++|.. .|.|.+|..... ...+...+..- .+.+.++ .++
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v-~Gav~aL~~fn 839 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVV-KGAVYALVEFN 839 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeee-ccceeehhhhC
Confidence 2222111111 11244457766 677777752 477888877762 12223322222 3344444 456
Q ss_pred CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 270 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
|+++|.- +..|++|+..+.+ .++.-..|..++..+...-. ++.++.|..-+++.+-.....
T Consensus 840 gkllA~I--n~~vrLye~t~~~---eLr~e~~~~~~~~aL~l~v~----gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 840 GKLLAGI--NQSVRLYEWTTER---ELRIECNISNPIIALDLQVK----GDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred CeEEEec--CcEEEEEEccccc---eehhhhcccCCeEEEEEEec----CcEEEEeeccceEEEEEEecc
Confidence 7777654 5679999998875 56666678888999999888 899999998888877665543
No 381
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.15 Score=45.17 Aligned_cols=50 Identities=8% Similarity=0.153 Sum_probs=38.5
Q ss_pred cEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCc
Q 018591 37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
.|+|++. +|+++..+.-..+.+..+.|+ ...|++...+|++.+|++-...
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence 5778885 566665554444588899999 7889999999999999986543
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.74 E-value=0.0055 Score=33.38 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=28.3
Q ss_pred cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591 127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
....|.++.|+| +++|.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 345799999999 99999999999999998 5544
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.67 E-value=0.29 Score=40.42 Aligned_cols=316 Identities=13% Similarity=0.136 Sum_probs=120.2
Q ss_pred CCCCceeeeeeCccCceEEEEE-------CCc-EEEEEeCCC--cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE
Q 018591 3 CKSHRSLAVLSGHVGSVSSLAL-------CGE-FILSASQGK--DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF 70 (353)
Q Consensus 3 ~~~~~~~~~l~~h~~~v~~~~~-------~~~-~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 70 (353)
..||-.+..|..+...-..+-| +|+ +|+++..|| .+.+-|+.+++..+.-.+..........+ ++.++
T Consensus 17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEE
T ss_pred CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEE
Confidence 4566677777765554444544 254 555555555 56666889988877665432222222222 55554
Q ss_pred EecCCCcEEEEEcccCccceeEEeeccccccceeeeec-ccceeEeecccceeeeeecCCceEEEE-EeC-CeEEEecCC
Q 018591 71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM-KQSNYVQTRRHHKRLWIEHADSISCLT-VYN-GLIYSGSWD 147 (353)
Q Consensus 71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-~~l~~~~~d 147 (353)
-......|+--|+++.++. .+..+|..-....... +........ +...+.. ...+. +.. ..+.-+--.
T Consensus 97 Yv~~~~~l~~vdL~T~e~~---~vy~~p~~~~g~gt~v~n~d~t~~~g-----~e~~~~d-~~~l~~~~~f~e~~~a~p~ 167 (386)
T PF14583_consen 97 YVKNGRSLRRVDLDTLEER---VVYEVPDDWKGYGTWVANSDCTKLVG-----IEISRED-WKPLTKWKGFREFYEARPH 167 (386)
T ss_dssp EEETTTEEEEEETTT--EE---EEEE--TTEEEEEEEEE-TTSSEEEE-----EEEEGGG------SHHHHHHHHHC---
T ss_pred EEECCCeEEEEECCcCcEE---EEEECCcccccccceeeCCCccEEEE-----EEEeehh-ccCccccHHHHHHHhhCCC
Confidence 4444457777787776532 3333332211111111 000000000 0000000 00000 000 112222334
Q ss_pred CcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcC---CC-cEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591 148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASA---DG-KIKAWGKELGKSHCHSLKGILEGHKDVSLNSV 220 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 220 (353)
..|.-.|+.+++....+. ....+..+.++|. .+.-|-. +. .-|||-+++.......+ .+......+.-=
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v---~~~~~~e~~gHE 243 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV---HRRMEGESVGHE 243 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES---S---TTEEEEEE
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee---ecCCCCcccccc
Confidence 567777888877655554 3567777888443 5554432 22 13667655443211111 111223334556
Q ss_pred EEcCCCCeEEe-----ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC----------------
Q 018591 221 VVSDDGKWVYG-----GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD---------------- 279 (353)
Q Consensus 221 ~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d---------------- 279 (353)
-|.|||..+.- ++.+..|.-+|..+..... ..... ...-.-.+++|++++-=+.|
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---SEEEEEE-TTSSEEEEEE------------------
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence 68899876653 2234456667777653221 11111 11111222346665532332
Q ss_pred CeEEEEecCCCcceEEecc-------ccCCCc-CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 280 KSIGIWKREAFGKLCRVGA-------ITGHEG-PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~-------~~~h~~-~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
-.|++++++.+... .+.. +.++.. .=-...|+|| +...|.++...|...||-++-+
T Consensus 320 p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPD---gk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 320 PWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPD---GKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TT---SSEEEEEE-TTSS-EEEEEE--
T ss_pred cEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCC---CCEEEEECCCCCCccEEEEeCc
Confidence 25677888765422 1111 121111 1245789999 2345666677888888865533
No 384
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.58 E-value=0.61 Score=43.01 Aligned_cols=200 Identities=12% Similarity=0.040 Sum_probs=112.7
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcc--------eEEEEE------------------eCCeEEEEcCCCcEEE
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA--------VNGLVA------------------SKGIVYSASADGKIKA 192 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~i~~------------------~~~~l~~~~~dg~i~i 192 (353)
+.++.++.++.|.-.|..+++.+.++...... ...+.+ .++.++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 78888899999999999999988877532210 112222 2337888999999999
Q ss_pred EeCCCCCcccccceeeeeccC-----------CceeeEEEEcC--CCCeEEeecC----------CCcEEEeeccccccc
Q 018591 193 WGKELGKSHCHSLKGILEGHK-----------DVSLNSVVVSD--DGKWVYGGGS----------DGFVMGWEGNVEIVR 249 (353)
Q Consensus 193 wd~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~ 249 (353)
.|.++++ ....+.... ......+.-.| .+..+++|+. +|.|+-+|.++++..
T Consensus 275 LDA~TGk-----~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 275 LDADTGK-----LCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EECCCCC-----EEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999988 222211100 00000111112 1335556542 688999999999877
Q ss_pred eeeeeeccccc-------------e---eEEEEEEcCcEEEEec------------------CCCeEEEEecCCCcceEE
Q 018591 250 WKLACETKAHE-------------M---AVLCVCLVGEFLCSGS------------------ADKSIGIWKREAFGKLCR 295 (353)
Q Consensus 250 ~~~~~~~~~~~-------------~---~v~~~~~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~~ 295 (353)
++......... . ...++.+...+++.+. ..+.|.-.|.++++....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 76543111000 0 1122222222333221 234566667777764433
Q ss_pred eccccCCCc-------CeEEEEeec-CCCCCC---eEEEEccCCCeEEEEEcCCCCCcccccCC
Q 018591 296 VGAITGHEG-------PVKCLQASP-NAVGGG---FLLYSGSLDKSLRVWWVSKQSSTSDSEEK 348 (353)
Q Consensus 296 ~~~~~~h~~-------~v~~~~~~~-~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 348 (353)
.+. ..|.- ...=+.+.. + | +.++.++.+|.+.+.|.++++.+...++.
T Consensus 430 ~Q~-~~hD~WD~D~~~~p~L~d~~~~~----G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~ 488 (764)
T TIGR03074 430 FQT-VHHDLWDMDVPAQPSLVDLPDAD----GTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEV 488 (764)
T ss_pred ecc-cCCccccccccCCceEEeeecCC----CcEeeEEEEECCCCEEEEEECCCCCEEeeceee
Confidence 322 11211 011111222 3 4 48999999999999999999988765543
No 385
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.42 Score=40.31 Aligned_cols=198 Identities=16% Similarity=0.086 Sum_probs=120.6
Q ss_pred EEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcC---CCcEEEEeCCCCCccccc
Q 018591 133 CLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASA---DGKIKAWGKELGKSHCHS 204 (353)
Q Consensus 133 ~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~---dg~i~iwd~~~~~~~~~~ 204 (353)
.++.++ ...+....++.|.+.|..+.+.......-. ....+++ .++.+..+.. ++++.+.|..+.+
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----- 151 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----- 151 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-----
Confidence 445555 355555567899999987776666553322 4456666 3334444433 6888888888876
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeeccccccce-eee-eeccccceeEEEEEEcCcEEEEecCC--
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIVRW-KLA-CETKAHEMAVLCVCLVGEFLCSGSAD-- 279 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~l~~~~~d-- 279 (353)
......... .+ ..++++|+++.++... .++.+.+.|........ ... ............+.+++.++.+....
T Consensus 152 ~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 152 VTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 333322222 33 7899999999666554 78899999977652211 000 01122233456677787755554433
Q ss_pred -CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcCCCCCccc
Q 018591 280 -KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVSKQSSTSD 344 (353)
Q Consensus 280 -g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~ 344 (353)
+.+...|..++....... ..+-. ....+..+|+ |..+.+.. ..+.+.+-|..+......
T Consensus 230 ~~~v~~id~~~~~v~~~~~-~~~~~-~~~~v~~~p~----g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 230 SNNVLKIDTATGNVTATDL-PVGSG-APRGVAVDPA----GKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CceEEEEeCCCceEEEecc-ccccC-CCCceeECCC----CCEEEEEecCCCeEEEEeCCCCceeee
Confidence 589999988765322111 11112 4566889999 88877774 447888888777655543
No 386
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.25 Score=42.11 Aligned_cols=133 Identities=14% Similarity=0.029 Sum_probs=75.3
Q ss_pred CcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591 148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV 222 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (353)
..+.++|+++++....+. ..+.-..-.|+++ .+++...||. |.+.|+.... ..+ +....+.. ..=.|
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-----~~~-Lt~~~gi~-~~Ps~ 289 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-----LPR-LTNGFGIN-TSPSW 289 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----cee-cccCCccc-cCccC
Confidence 469999998876554443 1222334455332 5666677776 5555776665 222 33222222 45678
Q ss_pred cCCCCeEEeec-CCC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC-CCe--EEEEecCCCc
Q 018591 223 SDDGKWVYGGG-SDG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA-DKS--IGIWKREAFG 291 (353)
Q Consensus 223 ~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-dg~--i~iw~~~~~~ 291 (353)
+|||+.++-.+ ..| .|.+++.+.... ...+..........++++|++++..+. +|. |.+.|+.++.
T Consensus 290 spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 290 SPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 99999877554 444 455556655532 222233333336667788888776654 344 6677776655
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.31 E-value=0.43 Score=38.41 Aligned_cols=156 Identities=11% Similarity=0.070 Sum_probs=76.6
Q ss_pred ccCcceEEEEE-eCCeEEEEcCCCcE-EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591 166 AHDDAVNGLVA-SKGIVYSASADGKI-KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG 243 (353)
Q Consensus 166 ~~~~~v~~i~~-~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 243 (353)
...+.+..+.. +++.+++.+..|.+ .-||..... -..........+.++.|.|++.+.+++ ..|.|+.=+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc------ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 33466777766 55555555555555 567755432 222222233446999999998776655 7888887772
Q ss_pred cccccceee-eeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeE
Q 018591 244 NVEIVRWKL-ACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL 321 (353)
Q Consensus 244 ~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 321 (353)
......+.. ..........+..+++. .+.+.+++..|.+ +...+.++..+.......-...++.+.|.++ .+-
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~----~~g 289 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP----DKG 289 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET----TEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCC----Cce
Confidence 222122222 11122233447777775 4445455555644 4556677766666555555667899999876 455
Q ss_pred EEEccCCCeEEEE
Q 018591 322 LYSGSLDKSLRVW 334 (353)
Q Consensus 322 l~s~~~dg~i~iw 334 (353)
++.| .+|.|.-|
T Consensus 290 f~lG-~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLG-QDGVLLRY 301 (302)
T ss_dssp EEE--STTEEEEE
T ss_pred EEEC-CCcEEEEe
Confidence 5554 68877655
No 388
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.28 Score=41.79 Aligned_cols=135 Identities=13% Similarity=0.008 Sum_probs=74.6
Q ss_pred CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCc--EEEeeccccccceeeeeeccccceeEE
Q 018591 188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGF--VMGWEGNVEIVRWKLACETKAHEMAVL 264 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~ 264 (353)
..+.++|+.+++.. ....+.++. ..-+|+|||+.|+. ...||. |.++|+..... .......+ ...-.
T Consensus 218 ~~i~~~~l~~g~~~---~i~~~~g~~----~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~Lt~~~g-i~~~P 287 (425)
T COG0823 218 PRIYYLDLNTGKRP---VILNFNGNN----GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PRLTNGFG-INTSP 287 (425)
T ss_pred ceEEEEeccCCccc---eeeccCCcc----CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--eecccCCc-cccCc
Confidence 46999999988621 111223332 45689999987664 455664 55667666531 11122222 22256
Q ss_pred EEEEcCcEEEE-ecCCCe--EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC-CCe--EEEEEcCC
Q 018591 265 CVCLVGEFLCS-GSADKS--IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL-DKS--LRVWWVSK 338 (353)
Q Consensus 265 ~~~~~~~~l~~-~~~dg~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~-dg~--i~iw~~~~ 338 (353)
+++++|+.++- .+..|. |.+++.+.... ...+..+ +.=..-.|+|| |++++..+. +|. |.+.++.+
T Consensus 288 s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~--~~~~~p~~Spd----G~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 288 SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSG--GGNSNPVWSPD----GDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred cCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccC--CCCcCccCCCC----CCEEEEEeccCCceeeEEeccCC
Confidence 77788876654 444554 55556555442 1212222 22226679999 888877764 344 56666655
Q ss_pred CC
Q 018591 339 QS 340 (353)
Q Consensus 339 ~~ 340 (353)
+.
T Consensus 360 ~~ 361 (425)
T COG0823 360 GG 361 (425)
T ss_pred CC
Confidence 44
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.08 E-value=0.43 Score=36.15 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=62.4
Q ss_pred cceEEEEEeCC---eEEEEcCCCcEEEEe--CCCCCcccccceeeeec----cCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591 169 DAVNGLVASKG---IVYSASADGKIKAWG--KELGKSHCHSLKGILEG----HKDVSLNSVVVSDDGKWVYGGGSDGFVM 239 (353)
Q Consensus 169 ~~v~~i~~~~~---~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 239 (353)
.--+.++|+.+ +.++-+.+-+|.-|| ..++.......+..++. ....+ -.+++..+|++.++.-..++|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P-DGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP-DGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCC-CcceEccCCcEEEEEecCcEEE
Confidence 33456777322 566667777887777 44444221111111111 11222 4566777899999999999999
Q ss_pred EeeccccccceeeeeeccccceeEEEEEEcCc
Q 018591 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGE 271 (353)
Q Consensus 240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 271 (353)
..|..++ +...++.-....++++++-|.
T Consensus 237 ~~dp~tG----K~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 237 KVDPTTG----KILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EECCCCC----cEEEEEEcCCCceEEEEecCC
Confidence 9999999 566666666778888888754
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.01 E-value=0.13 Score=42.96 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=53.1
Q ss_pred CCCcEEEEEcCCceeeeeccccC--cceEEEEE--eCC---eEEEEcCCCcEEEEeC-CCCCcccccceeeee----cc-
Q 018591 146 WDKTLKVWRVADLKCLESIKAHD--DAVNGLVA--SKG---IVYSASADGKIKAWGK-ELGKSHCHSLKGILE----GH- 212 (353)
Q Consensus 146 ~dg~v~iwd~~~~~~~~~~~~~~--~~v~~i~~--~~~---~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~----~~- 212 (353)
...++.+||+.+.+.++++.--. .....+.| .+. -++.+....+|..|-- +.++.........-. +-
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 35789999999999999885432 34556777 333 3444444555555533 333321111111100 00
Q ss_pred --C--------CceeeEEEEcCCCCeEEeec-CCCcEEEeeccccc
Q 018591 213 --K--------DVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEI 247 (353)
Q Consensus 213 --~--------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 247 (353)
. ...++.+.+|.|.++|..++ ..|.|+.||+....
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0 23458999999999987654 68999999998753
No 391
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.3 Score=40.81 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=86.7
Q ss_pred EEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce
Q 018591 172 NGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW 250 (353)
Q Consensus 172 ~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 250 (353)
+.+-| +.+..+.+...|.+.=|-....... ....+.......|.++.|++|.+.+++--.+..|.+++....+...
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndD---VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDD---VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCC---CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34444 2233333444455666655443311 1122222233356999999999999999999999999986554444
Q ss_pred eeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 251 KLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
....+.+.....+..+.|. ..-+|.-...| +.+|-....++ .++..+.|...|.-..|+++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccc
Confidence 4445555556678888886 44555555555 77787765443 45556678888988899987
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.90 E-value=0.51 Score=41.97 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=69.3
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE----cCcEEEEecCCCeEEEEecCCC---
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL----VGEFLCSGSADKSIGIWKREAF--- 290 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~iw~~~~~--- 290 (353)
.-+.-+.-++..++-+....+.|||.+.+... ....+ .....|..+.| +++.+++.|..+.|.+|.-...
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE--~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLE--YEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEE--Eeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 44555555665566666678999999987422 22222 44667888877 4778888888888988854211
Q ss_pred ---cceEEec--cccCCC-cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591 291 ---GKLCRVG--AITGHE-GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337 (353)
Q Consensus 291 ---~~~~~~~--~~~~h~-~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 337 (353)
.....+. .+..|+ .+|.+..|.++ |.+++.+ ++.+.|++-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~----G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKD----GTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecC----CeEEEEe--CCEEEEECCC
Confidence 1111222 223444 57999999998 7665544 3457787643
No 393
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.65 E-value=1.2 Score=37.84 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=44.4
Q ss_pred CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591 179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 179 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 244 (353)
+++.+-+.||.+.+|+-+.-. ....+.. .--+ ..+.+.+....|++++.+..+..|...
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~-----f~~~lp~-~llP-gPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFA-----FSRFLPD-FLLP-GPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEEEEecCceEEEEeCCcEE-----EEEEcCC-CCCC-cCeEEeecCCEEEEecCceeEEEecHH
Confidence 488899999999999977653 3333333 3333 678899988899999999889988753
No 394
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.65 E-value=1 Score=37.10 Aligned_cols=61 Identities=5% Similarity=-0.005 Sum_probs=31.3
Q ss_pred CeEEEecC-----CCcEEEEEcCCcee--eeeccccCcceEEE-EEeCCeEEEEcCCCc----EEEEeCCCCC
Q 018591 139 GLIYSGSW-----DKTLKVWRVADLKC--LESIKAHDDAVNGL-VASKGIVYSASADGK----IKAWGKELGK 199 (353)
Q Consensus 139 ~~l~~~~~-----dg~v~iwd~~~~~~--~~~~~~~~~~v~~i-~~~~~~l~~~~~dg~----i~iwd~~~~~ 199 (353)
...+.|+. ...+..||+.+.+- +..+......-.++ ...+...+.|+.++. +..||.++.+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 45555553 24688888876432 22222111111122 335556677766543 4578887765
No 395
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.49 E-value=1.3 Score=37.43 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=30.8
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA 176 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 176 (353)
..+++|..+|.|++|.. +|..+..-.-|..+|..|..
T Consensus 80 ~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 80 TCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred EEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEe
Confidence 47899999999999995 67766665678999999987
No 396
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.45 E-value=0.031 Score=50.26 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=26.9
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG 179 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~ 179 (353)
-++..+-.++.+++.+.++... ..+.+|...+..+++ ..+
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence 4666677788888877755433 555668888877776 444
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.45 E-value=1.4 Score=39.44 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=62.7
Q ss_pred EEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEE---e-CCeEEEEcCCCcEEEEeCC-----CCCcccccce-eeee
Q 018591 142 YSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVA---S-KGIVYSASADGKIKAWGKE-----LGKSHCHSLK-GILE 210 (353)
Q Consensus 142 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~---~-~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~-~~~~ 210 (353)
++-+....+.|||.+.+....+-. ...+.|.++.| + ...+++.+....|.+|--. ...+....+. ..+.
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 334445679999998876443321 34789999999 2 2377788888888888432 2221111111 1234
Q ss_pred ccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591 211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244 (353)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 244 (353)
.+...+|....|.++|..++.++ ..+.++|-.
T Consensus 125 ~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 125 SHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred cCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 55555678999999997665543 457887653
No 398
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.45 E-value=0.066 Score=28.26 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=27.1
Q ss_pred cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 304 ~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
+.|.++.|+|.... .++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~-~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGG-NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCc-ccEEEEEccCCeEEEEEccc
Confidence 46899999986211 26899998889999999985
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.43 E-value=0.44 Score=36.06 Aligned_cols=40 Identities=15% Similarity=-0.029 Sum_probs=35.4
Q ss_pred eCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591 137 YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA 176 (353)
Q Consensus 137 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 176 (353)
..++.++.-..++|...|..+++.+.++.-....|++++|
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 3367777778889999999999999999888999999999
No 400
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=1.4 Score=37.26 Aligned_cols=179 Identities=15% Similarity=0.103 Sum_probs=104.8
Q ss_pred EEEEEeC--CeEEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591 132 SCLTVYN--GLIYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KG--IVYSASADGKIKAWGKELGKSHCH 203 (353)
Q Consensus 132 ~~~~~~~--~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~ 203 (353)
..+++++ +.+.++.. ++.+.+.|..+.+.+.....-..+ ..+++. .+ .+++-..++.|.+.|........
T Consensus 119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~- 196 (381)
T COG3391 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR- 196 (381)
T ss_pred ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-
Confidence 4566666 45554443 789999999888887775433334 777773 33 34444578999999977665110
Q ss_pred cceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec-CC
Q 018591 204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS-AD 279 (353)
Q Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d 279 (353)
............+ ..+.++|++..+.+.... +.+...|...+.........-.. ...-..+.|+|..+.+.. ..
T Consensus 197 ~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 197 GSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred cccccccccCCCC-ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCC
Confidence 0000011222333 779999999977665444 58888888876322221111111 234456777888777764 45
Q ss_pred CeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591 280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314 (353)
Q Consensus 280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 314 (353)
+.+.+-|..+............-...+..+++.+.
T Consensus 275 ~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 275 GTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 88999998876633333333332334555555554
No 401
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.41 E-value=0.00043 Score=57.06 Aligned_cols=247 Identities=10% Similarity=0.048 Sum_probs=134.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
+.-++.++.+..|..||- .++....... ++....++|+ +..++.+-..+.+.+||+.+........-.
T Consensus 46 ~~nlavaca~tiv~~YD~-agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg------- 116 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDK-AGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG------- 116 (615)
T ss_pred CCceehhhhhhHHHhhhh-hcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-------
Confidence 444777888888999983 4444444433 4566677887 344556777889999999875422111100
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG 179 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~ 179 (353)
.|+... +.|++ ..++.+...|.+.+++..+.+.+.....|...++++++ ..+
T Consensus 117 -----------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 117 -----------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred -----------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 122222 56666 66777788899999998887777776668999999999 677
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeecc--CCce-eeEEE---EcCCCCeEEeecCCCcEEEeeccccccceeee
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGH--KDVS-LNSVV---VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA 253 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~-v~~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 253 (353)
+.+.++.|..+.+-...+.. ....+.. .+.. ...++ |..-+..+.+. ..|.+.+.-.+-........
T Consensus 172 ~vil~dcd~~L~v~~qeget------a~ltevggepdnm~~~y~k~n~w~kage~m~sV-vsgKkhl~yak~nE~D~pva 244 (615)
T KOG2247|consen 172 YVILCDCDNTLSVTTQEGET------ASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSV-VSGKKHLMYAKYNELDEPVA 244 (615)
T ss_pred eeeecCcHHHHHHhhhccce------eeeeeccCccchhhhheeeeeccccccceeeee-eecHHHHHHHhhcCCCCccc
Confidence 88888877766554433322 1111110 0000 00111 11122222211 11111111111000000111
Q ss_pred eeccccceeEEEEEEcCc-EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591 254 CETKAHEMAVLCVCLVGE-FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 313 (353)
..+....+.+.|..|-++ +|.-|..-|.|..-...+.+....+.....|.+.+..++.|.
T Consensus 245 l~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq 305 (615)
T KOG2247|consen 245 LQFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ 305 (615)
T ss_pred eEeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence 133334455666666433 666677777777777776653333333335666666666554
No 402
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.29 E-value=1.3 Score=36.00 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=104.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEE-EEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAV-VTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY 103 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~-~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 103 (353)
+.++.+--..+.|.-|+..+++.. .+.... .+.++ ..+ +..|+++.. -+.+++.+.+.. ...+......
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~-~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~--~t~~~~~~~~--- 107 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKR-VFPSPG-GFSSGALIDAGGRLIACEH--GVRLLDPDTGGK--ITLLAEPEDG--- 107 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceE-EEECCC-CcccceeecCCCeEEEEcc--ccEEEeccCCce--eEEeccccCC---
Confidence 346666667788888887765433 222222 22333 334 445555543 356677644431 0111111110
Q ss_pred eeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCC------------CcEEEEEcCCceeeeeccccCcc
Q 018591 104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWD------------KTLKVWRVADLKCLESIKAHDDA 170 (353)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~ 170 (353)
......+.....+ ..+..++.. |.|+.+|. .+..++.+..+-..
T Consensus 108 ----------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~ 164 (307)
T COG3386 108 ----------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTI 164 (307)
T ss_pred ----------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEe
Confidence 0112233344444 344443333 33444443 45556665555556
Q ss_pred eEEEEEeCC--e-EEEEcCCCcEEEEeCCC--CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-cEEEeecc
Q 018591 171 VNGLVASKG--I-VYSASADGKIKAWGKEL--GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-FVMGWEGN 244 (353)
Q Consensus 171 v~~i~~~~~--~-l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~ 244 (353)
-+.|+|+++ . +++=+..+.|.-|++.. +...............+.+ -.++...+|.+.+++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P-DG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP-DGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC-CceEEeCCCCEEEecccCCceEEEECCC
Confidence 678999444 4 44445557888887763 2211111122222333444 6788888888776555554 89999988
Q ss_pred ccccceeeeeeccccceeEEEEEEc
Q 018591 245 VEIVRWKLACETKAHEMAVLCVCLV 269 (353)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (353)
+ +...........+.++++-
T Consensus 244 -G----~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 244 -G----KLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred -C----cEEEEEECCCCCCccceEe
Confidence 5 3333333333455555554
No 403
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.29 E-value=1.1 Score=35.31 Aligned_cols=112 Identities=13% Similarity=-0.020 Sum_probs=62.6
Q ss_pred eeEEEEcCCCCeEEeec---CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEe-cCCCcc
Q 018591 217 LNSVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWK-REAFGK 292 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~ 292 (353)
+.+.+++++++.++... ....+.++..... ......+....--++.+++...+....+...+++. ..+++.
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 48899999998776655 3334555544332 11111333333334455566666666666666664 233322
Q ss_pred eEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc---CCCeEEEEEcC
Q 018591 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS---LDKSLRVWWVS 337 (353)
Q Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~ 337 (353)
.........-.+.|+++.+||| |..++... .++.|.+=-+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpD----G~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPD----GTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eeEEecccccCCceEEEEECCC----CcEEEEEEecCCCCeEEEEEEE
Confidence 1111112222228999999999 88777655 35777776554
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.29 E-value=1.8 Score=39.16 Aligned_cols=111 Identities=7% Similarity=0.065 Sum_probs=69.1
Q ss_pred CCCeEEeecCCCcEEEeeccccc-----c-----------ceeeeeeccccceeEEEEEEc----CcEEEEecCCCeEEE
Q 018591 225 DGKWVYGGGSDGFVMGWEGNVEI-----V-----------RWKLACETKAHEMAVLCVCLV----GEFLCSGSADKSIGI 284 (353)
Q Consensus 225 ~~~~l~~~~~dg~i~i~d~~~~~-----~-----------~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i 284 (353)
+...|+.+..||.|.+|.++.-. . ..++...+. -...+..++.. .++||++++...|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 45688999999999999764310 0 000111111 12244455543 678899999898988
Q ss_pred EecCCCcceEEeccccCCCcCeEEEEeecCCCCC-C-eEEEEccCCCeEEEEEc
Q 018591 285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG-G-FLLYSGSLDKSLRVWWV 336 (353)
Q Consensus 285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~-~~l~s~~~dg~i~iw~~ 336 (353)
|-............-..|...|.+|+|-++..+. | ..|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8765422111111112366779999999875321 2 48889999999999888
No 405
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.24 E-value=1.4 Score=36.25 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=63.6
Q ss_pred EEeCCeEEEecCC-----CcEEEEEcCCcee---eeeccccCcce--EEEEE-eCCeEEEEcC-----CCcEEEEeCCCC
Q 018591 135 TVYNGLIYSGSWD-----KTLKVWRVADLKC---LESIKAHDDAV--NGLVA-SKGIVYSASA-----DGKIKAWGKELG 198 (353)
Q Consensus 135 ~~~~~~l~~~~~d-----g~v~iwd~~~~~~---~~~~~~~~~~v--~~i~~-~~~~l~~~~~-----dg~i~iwd~~~~ 198 (353)
.....+++.|+.+ ..+..+|+.+.+- ...+..-..+. .+++. .+...+.|+. ...+..||+.+.
T Consensus 70 ~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 70 SVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred EECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 3344566666654 3566777765442 12221111111 22233 4445555553 235788888766
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC----cEEEeeccccccceeeeeeccc--cce---eEEEEEE-
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG----FVMGWEGNVEIVRWKLACETKA--HEM---AVLCVCL- 268 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~--~~~---~v~~~~~- 268 (353)
+-.. ...+..... . ...+...++++.+.|+.++ .+..||..+.. |........ ... ....+..
T Consensus 150 ~W~~---~~~~p~~~r-~-~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 150 EWFE---LPDFPGEPR-V-QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ--WQKVADPTTDSEPISLLGAASIKIN 222 (323)
T ss_pred CeeE---CCCCCCCCC-C-cceEEEECCEEEEEcCCCCccccceEEEecCCCe--eEECCCCCCCCCceeccceeEEEEC
Confidence 5211 111111111 1 2222334566777777654 35678887753 333322110 111 1222333
Q ss_pred cCcEEEEecCC
Q 018591 269 VGEFLCSGSAD 279 (353)
Q Consensus 269 ~~~~l~~~~~d 279 (353)
++.+++.|+.+
T Consensus 223 ~~~iyv~GG~~ 233 (323)
T TIGR03548 223 ESLLLCIGGFN 233 (323)
T ss_pred CCEEEEECCcC
Confidence 46788888865
No 406
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.18 E-value=1.2 Score=34.93 Aligned_cols=194 Identities=13% Similarity=0.099 Sum_probs=106.0
Q ss_pred ceeeeeeCcc-CceEEEEE-C-CcEEEEEeCCC--cEEEEeCCCceeeEEeccCc-eeeEEEEEeCCEEE-EecCCCcEE
Q 018591 7 RSLAVLSGHV-GSVSSLAL-C-GEFILSASQGK--DIIVWQQPDLRMFTKFGHGD-GSVKAVVTVGNKVF-TAHQDSRIR 79 (353)
Q Consensus 7 ~~~~~l~~h~-~~v~~~~~-~-~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-s~~~dg~i~ 79 (353)
+.+.+++... .-...+.| + |.++-+.+.-| .|+.+|+.+++......-.. -.--.+...++.|+ -.-.++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 4455555322 33446777 4 67777777666 79999999999876654322 22233444444444 556788899
Q ss_pred EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce
Q 018591 80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK 159 (353)
Q Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 159 (353)
+||.++-+ .+..+ ...+.=..++...+.|+.......++++|..+.+
T Consensus 114 ~yd~~tl~-----~~~~~----------------------------~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTLK-----KIGTF----------------------------PYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEETTTTE-----EEEEE----------------------------E-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEccccce-----EEEEE----------------------------ecCCcceEEEcCCCEEEEECCccceEEECCcccc
Confidence 99987654 33322 2334556677667777777777889999998877
Q ss_pred eeeecccc-----CcceEEEEEeCCeEE-EEcCCCcEEEEeCCCCCcccc----cceeee-----eccCCceeeEEEEcC
Q 018591 160 CLESIKAH-----DDAVNGLVASKGIVY-SASADGKIKAWGKELGKSHCH----SLKGIL-----EGHKDVSLNSVVVSD 224 (353)
Q Consensus 160 ~~~~~~~~-----~~~v~~i~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~----~~~~~~-----~~~~~~~v~~~~~~~ 224 (353)
....+.-. -..++.+.+-++.+. =.=....|...|..+++.... .+.... ......+.+.+|+.|
T Consensus 161 ~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~ 240 (264)
T PF05096_consen 161 EVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP 240 (264)
T ss_dssp EEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred eEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence 66655321 234555666555433 334455667777777762100 000000 011245669999998
Q ss_pred CCCeEEeec
Q 018591 225 DGKWVYGGG 233 (353)
Q Consensus 225 ~~~~l~~~~ 233 (353)
..+.+...+
T Consensus 241 ~~~~l~vTG 249 (264)
T PF05096_consen 241 ETDRLFVTG 249 (264)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEe
Confidence 766655544
No 407
>PLN02193 nitrile-specifier protein
Probab=95.15 E-value=2 Score=37.52 Aligned_cols=148 Identities=10% Similarity=0.039 Sum_probs=72.0
Q ss_pred CCeEEEecCC-----CcEEEEEcCCceeee--ecc--ccCcceEEEEE-eCCeEEEEcCCC-----cEEEEeCCCCCccc
Q 018591 138 NGLIYSGSWD-----KTLKVWRVADLKCLE--SIK--AHDDAVNGLVA-SKGIVYSASADG-----KIKAWGKELGKSHC 202 (353)
Q Consensus 138 ~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~--~~~~~v~~i~~-~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 202 (353)
..+++.|+.+ +.+..+|+.+.+-.. .+. .....-.+++. .+..++.|+.++ .+..||+.+.+-..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 3556666654 458888887654322 111 01111122333 444566666543 36678877654211
Q ss_pred ccceeeeeccCCceeeEEEEcCCCCeEEeecCC----CcEEEeeccccccceeeeeec---cccceeEEEEEEcCcEEEE
Q 018591 203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWEGNVEIVRWKLACET---KAHEMAVLCVCLVGEFLCS 275 (353)
Q Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~~ 275 (353)
............. ..++. -+++.++.++.+ ..+.+||+.+.. |...... +.......+...++++++.
T Consensus 309 ~~~~~~~~~~R~~--~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~~iyv~ 383 (470)
T PLN02193 309 CSTPGDSFSIRGG--AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGKHIVIF 383 (470)
T ss_pred CCCCCCCCCCCCC--cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECCEEEEE
Confidence 1000000011111 11222 246666766655 458899988763 3333221 1122223344556778888
Q ss_pred ecCC--------------CeEEEEecCCC
Q 018591 276 GSAD--------------KSIGIWKREAF 290 (353)
Q Consensus 276 ~~~d--------------g~i~iw~~~~~ 290 (353)
|+.+ +.+.+||+.+.
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcC
Confidence 8753 24788888764
No 408
>PLN02153 epithiospecifier protein
Probab=95.13 E-value=1.6 Score=36.26 Aligned_cols=53 Identities=8% Similarity=-0.016 Sum_probs=29.6
Q ss_pred CcEEEeeccccccceeeeee---ccccceeEEEEEEcCcEEEEecCC--------------CeEEEEecCCC
Q 018591 236 GFVMGWEGNVEIVRWKLACE---TKAHEMAVLCVCLVGEFLCSGSAD--------------KSIGIWKREAF 290 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~iw~~~~~ 290 (353)
..+.+||..+.. |..... .........+....+.+++.|+.. +.+..||..+.
T Consensus 217 ~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 217 NAVQFFDPASGK--WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CceEEEEcCCCc--EEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 458888887763 333221 111222333445567777777752 25778887653
No 409
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.11 E-value=1 Score=33.86 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=37.0
Q ss_pred EEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591 172 NGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 172 ~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
..++. .++.|+.+.....|.+|++.+.. ..+...+..- ..|..+.++..|+++++--
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~---~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEE---CPLLCTFSTV--GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCC---CceeEEEcch--hheeEEEeccccceEEEEE
Confidence 34444 33666665777889999998443 1133333333 3358999999999999853
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.58 Score=43.87 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=75.1
Q ss_pred EEEecCCCcEEEEEcCCceee-----eecccc------CcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccce
Q 018591 141 IYSGSWDKTLKVWRVADLKCL-----ESIKAH------DDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLK 206 (353)
Q Consensus 141 l~~~~~dg~v~iwd~~~~~~~-----~~~~~~------~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 206 (353)
++..+.+-.|..||+++...- .-+..| .....++.|++. ..+....|+.|++..+.....
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~------ 190 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ------ 190 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh------
Confidence 333444557899999763221 111111 233445666444 677888899999987765441
Q ss_pred eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc
Q 018591 207 GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE 271 (353)
Q Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 271 (353)
...........++++|+|.|+.++.|...|++.-|...-.... .+..........|.++.|-+.
T Consensus 191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceee-cccCCCcCCCcceeEEEEecc
Confidence 1111223334599999999999999999999999976554211 111111122577888888643
No 411
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.02 E-value=2.2 Score=37.15 Aligned_cols=267 Identities=10% Similarity=0.071 Sum_probs=134.3
Q ss_pred CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCc-eeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591 17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGD-GSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRL 93 (353)
Q Consensus 17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 93 (353)
.+|..+.++ ...+..|+.|| +..+|..+++.++.-.... ..|..+..+ ...+..|+.+| +.+.+.+..+ .
T Consensus 165 ~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~-----~ 237 (671)
T COG3292 165 TPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWR-----A 237 (671)
T ss_pred ccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcc-----c
Confidence 467788887 56777888887 6777888887776554433 667777666 77788888775 5666655422 1
Q ss_pred eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecccc--Ccc
Q 018591 94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAH--DDA 170 (353)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~ 170 (353)
....+. -..+.|..+.-.. ..+-.|+.+|..+.--.+.+-.....+.| ...
T Consensus 238 sn~~~~--------------------------lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~ 291 (671)
T COG3292 238 SNWGPM--------------------------LPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVST 291 (671)
T ss_pred cccCCC--------------------------CcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCcccc
Confidence 000000 1223444444444 67777777775433222222222222222 234
Q ss_pred eEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeecCCCcEEEeeccccc
Q 018591 171 VNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEI 247 (353)
Q Consensus 171 v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 247 (353)
|.++.. .++.+.+++.+|.+++-+-.-. ....+....+..+...+..| .+..+.-....|.+.+-+-.++.
T Consensus 292 vnsL~~D~dGsLWv~t~~giv~~~~a~w~------~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~ 365 (671)
T COG3292 292 VNSLWLDTDGSLWVGTYGGIVRYLTADWK------RMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGE 365 (671)
T ss_pred ccceeeccCCCEeeeccCceEEEecchhh------heeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCc
Confidence 455555 5668888888887776443211 11112222222212222222 12222222223333333333331
Q ss_pred cceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCC-CcceEEecccc-CCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA-FGKLCRVGAIT-GHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
.. .......+......+++- +..+-.|+...-+..|+..+ +- .+.+.. ...++|.++-=.|+ ++ |..|
T Consensus 366 ~v-~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~a---vlde~agl~ss~V~aived~d----ns-LWIG 435 (671)
T COG3292 366 LV-RSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWA---VLDEDAGLPSSEVSAIVEDPD----NS-LWIG 435 (671)
T ss_pred EE-EEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCccc---ccccccCCcccceeeeeecCC----CC-EEEe
Confidence 11 112222222222233333 44566666664466666655 21 111111 13567888888887 66 8888
Q ss_pred cCCCeEE
Q 018591 326 SLDKSLR 332 (353)
Q Consensus 326 ~~dg~i~ 332 (353)
+.+|.++
T Consensus 436 Ts~Glvk 442 (671)
T COG3292 436 TSGGLVK 442 (671)
T ss_pred ccCCeEe
Confidence 8888654
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=2.5 Score=38.04 Aligned_cols=202 Identities=14% Similarity=0.061 Sum_probs=101.1
Q ss_pred ceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591 130 SISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKG 207 (353)
Q Consensus 130 ~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 207 (353)
...++..+| +..-..+.--.|+|+++ +|..+..+.-..+.+..+.|+++ .|+....+|++++|++-....... ..
T Consensus 45 GpIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~--sv 121 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN--SV 121 (829)
T ss_pred CceEEEecccccccccccceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc--cc
Confidence 344555565 21111234456888886 57777766555558889999554 899999999999999875541110 01
Q ss_pred eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee-ccccccceeeeeeccccceeEEEEEE--c---CcEEEEec-CCC
Q 018591 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE-GNVEIVRWKLACETKAHEMAVLCVCL--V---GEFLCSGS-ADK 280 (353)
Q Consensus 208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~-~dg 280 (353)
..+.....+ ..+.+..+|-.+. ..+|.+.+-+ .... ..++.. ..+....+-.|+.. + ...++-.. ..+
T Consensus 122 g~e~~~~~I-~ec~~f~~GVavl--t~~g~v~~i~~~~~~-~~~~~~-diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~ 196 (829)
T KOG2280|consen 122 GFESQMSDI-VECRFFHNGVAVL--TVSGQVILINGVEEP-KLRKMP-DIPYNELPKSCWTVFQPHRQSTILLDVDVAVG 196 (829)
T ss_pred ccccccCce-eEEEEecCceEEE--ecCCcEEEEcCCCcc-hhhhCC-CCCCccCCCcceeEecCCCcceeEEeechhhh
Confidence 112222333 4444444553333 3344444433 3221 111111 11111111122222 1 11111111 111
Q ss_pred eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591 281 SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346 (353)
Q Consensus 281 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 346 (353)
..++-...... ....+..-.+.+..+..||+ .++|+--..+|.|.+-+....+.+.+..
T Consensus 197 -~~~~q~~~~~~--q~~~~~~~~~~~~ki~VS~n----~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 197 -LHICQVEESRV--QLHALSWPNSSVVKISVSPN----RRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred -hcccceecccc--cccccCCCCceEEEEEEcCC----cceEEEEecCCcEEEEecchhhhhhccC
Confidence 11222221110 11122222356788899998 8899999999999888877766655443
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.95 E-value=0.26 Score=37.74 Aligned_cols=72 Identities=10% Similarity=0.100 Sum_probs=51.5
Q ss_pred eEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe---cc-cc-------CCCcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591 262 AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV---GA-IT-------GHEGPVKCLQASPNAVGGGFLLYSGSLDKS 330 (353)
Q Consensus 262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~-~~-------~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~ 330 (353)
++..+..++.+|++-+.+|.+++||+.+.+..... .. +. .....|..+.++.+ |.-+++-+ +|.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~----G~PiV~ls-ng~ 88 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN----GVPIVTLS-NGD 88 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC----CCEEEEEe-CCC
Confidence 45667778999999999999999999987632111 11 11 34567888889877 77777765 467
Q ss_pred EEEEEcCC
Q 018591 331 LRVWWVSK 338 (353)
Q Consensus 331 i~iw~~~~ 338 (353)
.+.|+..-
T Consensus 89 ~y~y~~~L 96 (219)
T PF07569_consen 89 SYSYSPDL 96 (219)
T ss_pred EEEecccc
Confidence 78887653
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=1.1 Score=38.29 Aligned_cols=101 Identities=16% Similarity=0.052 Sum_probs=57.0
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV 296 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 296 (353)
|..+..++.|..++..+.+|.+.++=.+.- -....+......|.|-. +.+.+ .+
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rw----G~~s~~eDgk~~v~CRt-----------------~~i~~-----~~ 159 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRW----GKNSEFEDGKSTVNCRT-----------------TPVAE-----RF 159 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhc----CccceecCCCceEEEEe-----------------ecccc-----ee
Confidence 467788899999999999996655432211 12222222222333322 22221 11
Q ss_pred ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591 297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS 345 (353)
Q Consensus 297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 345 (353)
..-. ..-.+..++|+|+.-. ...|..-+.|..||+|++.+...+...
T Consensus 160 ftss-~~ltl~Qa~WHP~S~~-D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 160 FTSS-TSLTLKQAAWHPSSIL-DPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eccC-CceeeeeccccCCccC-CceEEEEecCcEEEEEecCCcchhhcc
Confidence 1111 1123667788887321 246677778999999999988776543
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.76 E-value=1.4 Score=39.93 Aligned_cols=149 Identities=10% Similarity=0.073 Sum_probs=86.3
Q ss_pred CCeEEEecCCCcEEEEEcCCceeee------ec----------------cccCcceEEEEE----eCCeEEEEcCCCcEE
Q 018591 138 NGLIYSGSWDKTLKVWRVADLKCLE------SI----------------KAHDDAVNGLVA----SKGIVYSASADGKIK 191 (353)
Q Consensus 138 ~~~l~~~~~dg~v~iwd~~~~~~~~------~~----------------~~~~~~v~~i~~----~~~~l~~~~~dg~i~ 191 (353)
.++++++. .+.|.+|+.+...... .+ ......|+.|.. ....|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 35555554 6889999875422110 11 001234555554 344899999999999
Q ss_pred EEeCCCCC-------------cccccceeeeeccCCceeeEEEEc--CCCCeEEeecCCCcEEEeeccccccceeee-ee
Q 018591 192 AWGKELGK-------------SHCHSLKGILEGHKDVSLNSVVVS--DDGKWVYGGGSDGFVMGWEGNVEIVRWKLA-CE 255 (353)
Q Consensus 192 iwd~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~ 255 (353)
+|.++.-- .........+....+.....++++ ...+++|+++....|.+|-........... ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 99652110 000001111222223345889998 888899999999999998766532111111 11
Q ss_pred ccccceeEEEEEEc---Cc---EEEEecCCCeEEEEec
Q 018591 256 TKAHEMAVLCVCLV---GE---FLCSGSADKSIGIWKR 287 (353)
Q Consensus 256 ~~~~~~~v~~~~~~---~~---~l~~~~~dg~i~iw~~ 287 (353)
...|..+..++-.+ +. .|++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 23445554555443 22 7888999999999887
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=94.58 E-value=2.2 Score=35.26 Aligned_cols=155 Identities=10% Similarity=-0.022 Sum_probs=79.1
Q ss_pred CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 168 DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 168 ~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
...+.++.+ +++.++..+..|.+..- .+.+.. .-..........+..+.+.++++.++++ ..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~----tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT----AWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC----eEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 456778887 45566666666765532 112210 1112222333445889999998877665 4565543223322
Q ss_pred ccceeeeeec-cccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591 247 IVRWKLACET-KAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS 324 (353)
Q Consensus 247 ~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s 324 (353)
..++..... ......+..+.+. ...+++++.+|.+. ...+.++....+.....-....+.+.|..+ ++.++
T Consensus 246 -~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~----~~~~~- 318 (334)
T PRK13684 246 -ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDP----EKGFV- 318 (334)
T ss_pred -CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCC----CceEE-
Confidence 122221111 1112234445443 22345555677654 445555544443221222346788888866 55555
Q ss_pred ccCCCeEEEEE
Q 018591 325 GSLDKSLRVWW 335 (353)
Q Consensus 325 ~~~dg~i~iw~ 335 (353)
.+..|.|.-|+
T Consensus 319 ~G~~G~il~~~ 329 (334)
T PRK13684 319 LGQRGVLLRYV 329 (334)
T ss_pred ECCCceEEEec
Confidence 55688887765
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.55 E-value=0.18 Score=45.79 Aligned_cols=187 Identities=12% Similarity=0.073 Sum_probs=104.8
Q ss_pred CcEEEEEcCCcee-eeeccccCcceEEEEE-eCC--eEEEEcCCCcEEEEeCCC--CCcccccceeeeeccCCceeeEEE
Q 018591 148 KTLKVWRVADLKC-LESIKAHDDAVNGLVA-SKG--IVYSASADGKIKAWGKEL--GKSHCHSLKGILEGHKDVSLNSVV 221 (353)
Q Consensus 148 g~v~iwd~~~~~~-~~~~~~~~~~v~~i~~-~~~--~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~ 221 (353)
+.+++-+..+... -..+++..+.+-.+.| +.+ .+. -.-|.+.+||+.- ++..+........ ..+..+.-+.
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~-p~gs~~~~V~ 187 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT-PYGSDPQLVS 187 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecC-cCCCCcceee
Confidence 4566655443221 1223566777888888 222 222 3447788998763 3311111122222 2222225555
Q ss_pred EcC---CCCeEEeecCCCcEEEeeccccccceeeeeeccccc-------------eeEEEEEEcCcEEEEecCCCeEEEE
Q 018591 222 VSD---DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-------------MAVLCVCLVGEFLCSGSADKSIGIW 285 (353)
Q Consensus 222 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~l~~~~~dg~i~iw 285 (353)
|.| +..++..+..++.+++........ ..+.+|. ..+-.+++||..++....||.++.|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 554 567888888899999887766421 1122232 2345688899999999999999888
Q ss_pred ecCCC--cceEEeccccCCC-cCeEEEEeecCCC-----CCCeEEEEccC-CCeEEEEEcCCCCCc
Q 018591 286 KREAF--GKLCRVGAITGHE-GPVKCLQASPNAV-----GGGFLLYSGSL-DKSLRVWWVSKQSST 342 (353)
Q Consensus 286 ~~~~~--~~~~~~~~~~~h~-~~v~~~~~~~~~~-----~~~~~l~s~~~-dg~i~iw~~~~~~~~ 342 (353)
.+.-. ....++...+.|. ++-.|.-|..... +--.+++++++ +..+++|.-..-+|+
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 76422 2233566677777 3333333332210 00234555554 456999988777666
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.54 E-value=2.8 Score=38.52 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=53.9
Q ss_pred eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEE
Q 018591 216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR 295 (353)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 295 (353)
.|..+.++|+|++++..+..| |.|-.+... +.....+.+....+. .+.+.+.. .
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r---~g~~~~~~~g~~~i~-----------------Crt~~v~~-----~ 139 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRR---WGKNGEFEDGKKEIN-----------------CRTVPVDE-----R 139 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccc---cCccccccCCCccee-----------------EEEEEech-----h
Confidence 468999999999999988876 444444221 001111111111111 12222221 0
Q ss_pred eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
+. ...+...|..+.|+|.... +..|+.-..|+++|+||+.+....
T Consensus 140 ~~-~~~~~~~i~qv~WhP~s~~-~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 140 FF-TSNSSLEIKQVRWHPWSES-DSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred hc-cCCCCceEEEEEEcCCCCC-CCeEEEEecCCEEEEEecCCCCCC
Confidence 10 1123456778888886332 467777777888888888765433
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.54 E-value=1.8 Score=33.94 Aligned_cols=183 Identities=11% Similarity=0.026 Sum_probs=99.0
Q ss_pred eEEEEE-eC-CeEEEecCCC--cEEEEEcCCceeeeeccccC-cceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCccccc
Q 018591 131 ISCLTV-YN-GLIYSGSWDK--TLKVWRVADLKCLESIKAHD-DAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHS 204 (353)
Q Consensus 131 i~~~~~-~~-~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 204 (353)
...+.| .. .++-+.+.-| .|+.+|+.+++......-.. ----.++.-++ .....=.++...+||..+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~----- 121 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK----- 121 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE-----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce-----
Confidence 446777 44 4445555555 79999999998766543221 22234455344 44445567889999998876
Q ss_pred ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc-ceeEEEEEE-cCcEEEEecCCCeE
Q 018591 205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCL-VGEFLCSGSADKSI 282 (353)
Q Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~l~~~~~dg~i 282 (353)
....+.-... - ..++ .+++.|+.+.....++.+|..+-...........+. -..+..+.+ +|...|=.-....|
T Consensus 122 ~~~~~~y~~E-G-WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I 197 (264)
T PF05096_consen 122 KIGTFPYPGE-G-WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEE
T ss_pred EEEEEecCCc-c-eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeE
Confidence 4444443322 2 5566 557778887778889999987653322222221111 112333444 45555555566677
Q ss_pred EEEecCCCcceEEec--cc----------cCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 283 GIWKREAFGKLCRVG--AI----------TGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 283 ~iw~~~~~~~~~~~~--~~----------~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
...|..+++....+. .+ .....-.+.|++.|. .+.+++||
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~---~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE---TDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT---TTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC---CCEEEEEe
Confidence 777888776322110 01 011356899999998 25666666
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.39 E-value=2.8 Score=35.63 Aligned_cols=279 Identities=12% Similarity=0.034 Sum_probs=135.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCce-----eeEEeccCceeeEEEEEe------CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591 26 GEFILSASQGKDIIVWQQPDLR-----MFTKFGHGDGSVKAVVTV------GNKVFTAHQDSRIRVWKVSRSSENVFRLV 94 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 94 (353)
.+.++.||.+|.++||+....+ ++-+.. -..+|..+... +...++.=.-..+.+|.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~----- 110 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT----- 110 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC-----
Confidence 4599999999999999975433 222222 24577777653 222333344567788877432210
Q ss_pred eccccccceeeeecccceeEeecccceeeeeecCCc--eEEEE---EeC----CeEEEecCCCcEEEEEcCCceeeeecc
Q 018591 95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS--ISCLT---VYN----GLIYSGSWDKTLKVWRVADLKCLESIK 165 (353)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~---~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~ 165 (353)
...... ........|.-. ...++ |-. +.+.+-+.||.+.+++-+.......+.
T Consensus 111 --~~~g~~----------------~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp 172 (418)
T PF14727_consen 111 --VEHGNQ----------------YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP 172 (418)
T ss_pred --cccCcE----------------EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC
Confidence 000000 000111122221 11222 211 688889999999999976654444443
Q ss_pred ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCc----------------ccccceeeeeccCCceeeEE---EEcC
Q 018591 166 AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKS----------------HCHSLKGILEGHKDVSLNSV---VVSD 224 (353)
Q Consensus 166 ~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~v~~~---~~~~ 224 (353)
. .--...+.+ ..+.+++++.+..+.-|....-.. ....+...+.-.-+..+..+ .++.
T Consensus 173 ~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 173 D-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred C-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3 112223444 455888888888888886422110 00111111111112222232 2332
Q ss_pred CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE----cC---cEEEEecCCCeEEEEecCCCcceEEec
Q 018591 225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL----VG---EFLCSGSADKSIGIWKREAFGKLCRVG 297 (353)
Q Consensus 225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~ 297 (353)
....+++-+ ...+.+.+-.. ..+....+............ .+ ..++.++.++++.||.-.+ .+.
T Consensus 252 ~~~~IvvLg-er~Lf~l~~~G---~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~W 322 (418)
T PF14727_consen 252 SESDIVVLG-ERSLFCLKDNG---SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVW 322 (418)
T ss_pred CCceEEEEe-cceEEEEcCCC---eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEE
Confidence 323333333 23355554432 12233333322222222222 12 2588899999999997432 121
Q ss_pred cccCCCcCeEEEEee--cCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 298 AITGHEGPVKCLQAS--PNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 298 ~~~~h~~~v~~~~~~--~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
..+-...+| ++... ++. ...+++-+.+|.+.+-=+.+.-..
T Consensus 323 sA~l~~~PV-al~v~~~~~~---~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 323 SAQLPHVPV-ALSVANFNGL---KGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred ecCCCCCCE-EEEecccCCC---CceEEEEcCCCcEEEEEeCCCCcc
Confidence 111122222 33332 221 458899999999998877655433
No 421
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.35 E-value=4.7 Score=37.98 Aligned_cols=116 Identities=13% Similarity=-0.019 Sum_probs=73.5
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG 297 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 297 (353)
.-.+..|...++.+| ....+++||+...+...+. .++.-+..|..+.+.+..+++|...-.+.++..+...+...+.
T Consensus 937 ~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~--e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~f 1013 (1205)
T KOG1898|consen 937 PVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKC--ELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVF 1013 (1205)
T ss_pred cceEEeccCCEEEEe-cccEEEEeeCChHHHHhhh--hhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEE
Confidence 446667766666555 4567999999877443333 2233567888899999999999877777766554433311111
Q ss_pred cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
.-..-...|+++.+-. ...+|.+..=|.+.+-.+.....
T Consensus 1014 adD~~pR~Vt~~~~lD-----~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1014 ADDPVPRHVTALELLD-----YDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred eCCCccceeeEEEEec-----CCceeeccccCcEEEEECCCcch
Confidence 1122234577776654 35788888888888877765443
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.23 E-value=0.48 Score=36.32 Aligned_cols=77 Identities=13% Similarity=0.244 Sum_probs=45.4
Q ss_pred cceEEEEEeCCeEEEEcCCCcEEEEeCCCCCccccc--ceeeeec------cCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591 169 DAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHS--LKGILEG------HKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 169 ~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 240 (353)
.++..+...++++++.+.+|.+++||+.+.+..... +...+.. .....|..+.++.+|.-+++-+ +|..+.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 344455556667777777788888887776521111 1111111 2233357788888887666544 577888
Q ss_pred eecccc
Q 018591 241 WEGNVE 246 (353)
Q Consensus 241 ~d~~~~ 246 (353)
|+..-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 887654
No 423
>PLN02153 epithiospecifier protein
Probab=93.97 E-value=3.1 Score=34.57 Aligned_cols=151 Identities=9% Similarity=0.021 Sum_probs=69.6
Q ss_pred CCeEEEecCC-------CcEEEEEcCCceeeee--ccc-cCc---ceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCC
Q 018591 138 NGLIYSGSWD-------KTLKVWRVADLKCLES--IKA-HDD---AVNGLVASKGIVYSASAD-----GKIKAWGKELGK 199 (353)
Q Consensus 138 ~~~l~~~~~d-------g~v~iwd~~~~~~~~~--~~~-~~~---~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~ 199 (353)
...++.|+.+ ..+.+||+.+.+-... ... ... ....+.+.+..++.|+.+ ..+.+||+.+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 3556666653 3578888876542221 110 011 122333355566666653 247788887654
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----------CcEEEeeccccccceeeeeecc---ccceeEEE
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----------GFVMGWEGNVEIVRWKLACETK---AHEMAVLC 265 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~ 265 (353)
-................-.+++. -++++.+.|+.+ ..+.+||..+.. |....... ........
T Consensus 113 W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~ 189 (341)
T PLN02153 113 WTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGENFEKRGGAGF 189 (341)
T ss_pred EEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCCCCCCCCcceE
Confidence 11100000000011111022222 345666666643 247788887652 33222211 11122223
Q ss_pred EEEcCcEEEEecCC-------------CeEEEEecCCCc
Q 018591 266 VCLVGEFLCSGSAD-------------KSIGIWKREAFG 291 (353)
Q Consensus 266 ~~~~~~~l~~~~~d-------------g~i~iw~~~~~~ 291 (353)
...++++++.|+.+ ..+.+||..+.+
T Consensus 190 ~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 190 AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred EEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 34567766665532 468889987643
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.95 E-value=0.38 Score=42.94 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred cCcEEEEecCCCeEEEEecCC----CcceEEec--------ccc-----------CCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 269 VGEFLCSGSADKSIGIWKREA----FGKLCRVG--------AIT-----------GHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 269 ~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~--------~~~-----------~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
++..++.+..||.+....... +....... .+. ...+.+.++++++..-.+..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 677888888888888877664 11111000 000 1123456666666100016799999
Q ss_pred cCCCeEEEEEcCCCCCcc
Q 018591 326 SLDKSLRVWWVSKQSSTS 343 (353)
Q Consensus 326 ~~dg~i~iw~~~~~~~~~ 343 (353)
+.|+++|+||+.+++++.
T Consensus 237 ~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp ETTSEEEEEETTTTCEEE
T ss_pred eCCCeEEEEECCCCeEEE
Confidence 999999999999999844
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.74 E-value=4.5 Score=35.54 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=62.9
Q ss_pred ecCCceEEEEEeC------CeEEEecCCCcEEEEEcCC-----ceeee----eccc-cCcceEEEEEeCC--eEEEEcCC
Q 018591 126 EHADSISCLTVYN------GLIYSGSWDKTLKVWRVAD-----LKCLE----SIKA-HDDAVNGLVASKG--IVYSASAD 187 (353)
Q Consensus 126 ~~~~~i~~~~~~~------~~l~~~~~dg~v~iwd~~~-----~~~~~----~~~~-~~~~v~~i~~~~~--~l~~~~~d 187 (353)
|.-..|..+.|.| ..+++.-....|.+|-+.- .+.+. ++.. ..---..+.|+|. .|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 4556788899987 2455556668899998752 22211 1111 0111234566444 34333333
Q ss_pred CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeecccc
Q 018591 188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVE 246 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 246 (353)
..-.+++++... ............|.|.+|.+||+.|+++- ..=.-++||-...
T Consensus 134 dvSV~~sV~~d~-----srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDS-----SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCC-----ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 333455555443 12222223344469999999998877653 3335677876543
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.72 E-value=3.1 Score=33.67 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=81.3
Q ss_pred ceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc---ccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591 130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK---AHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSL 205 (353)
Q Consensus 130 ~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 205 (353)
...++.|..+.....+..+. .+...+.++.=..+. .-.+....+.. .++....++..|.|. ...++-.. -
T Consensus 63 ~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy--~T~DgG~t---W 136 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIY--RTTDGGKT---W 136 (302)
T ss_dssp EEEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EE--EESSTTSS---E
T ss_pred eEEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEE--EeCCCCCC---e
Confidence 35667777633333444453 333333333222221 11233334443 555554455555543 33333211 1
Q ss_pred eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEE
Q 018591 206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIG 283 (353)
Q Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 283 (353)
...... ....+..+..+++|++++++.......-||.-.. .+.+.... ....+..+.+ ++.+.+ ....|.|+
T Consensus 137 ~~~~~~-~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~~r~--~~~riq~~gf~~~~~lw~-~~~Gg~~~ 210 (302)
T PF14870_consen 137 QAVVSE-TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPHNRN--SSRRIQSMGFSPDGNLWM-LARGGQIQ 210 (302)
T ss_dssp EEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEEE----SSS-EEEEEE-TTS-EEE-EETTTEEE
T ss_pred eEcccC-CcceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEEccC--ccceehhceecCCCCEEE-EeCCcEEE
Confidence 122222 2233588888999999999877766667775433 22332222 3345555555 455544 44888888
Q ss_pred EEe-cCCCcceEE-eccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 284 IWK-REAFGKLCR-VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 284 iw~-~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
.=+ ....+.... +..+..-.-.+.+++|.++ +...++|+..
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~----~~~wa~gg~G 253 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP----NEIWAVGGSG 253 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSS----S-EEEEESTT
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCC----CCEEEEeCCc
Confidence 877 222222111 1111122234899999998 7777766644
No 427
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.64 E-value=3.7 Score=34.33 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=48.5
Q ss_pred CCcEEEEEcCCceeeeeccccCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCccccccee---eeecc---------C
Q 018591 147 DKTLKVWRVADLKCLESIKAHDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHCHSLKG---ILEGH---------K 213 (353)
Q Consensus 147 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~---------~ 213 (353)
.+.+.++|+++++....... ...+....|+| +..++--.++.|.+++..++......... .+.+- -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 36789999998766555443 56777888843 33333445688999988766421100000 00000 1
Q ss_pred CceeeEEEEcCCCCeEEeec
Q 018591 214 DVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~ 233 (353)
+.. ..+.||||+++|+...
T Consensus 101 ~~~-~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 101 DRR-SAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SSS-BSEEE-TTSSEEEEEE
T ss_pred ccc-cceEECCCCCEEEEEE
Confidence 122 6789999999887654
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.57 E-value=2.5 Score=36.26 Aligned_cols=142 Identities=18% Similarity=0.115 Sum_probs=84.3
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-------eEEeecCCCcEEEeeccccccceee
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-------WVYGGGSDGFVMGWEGNVEIVRWKL 252 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~ 252 (353)
.+..+.....++-.|++.++ ....+..+... -+.|.|..+ .-++|-.+..|.-.|.+........
T Consensus 482 i~~dg~~~~kLykmDIErGk-----vveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGK-----VVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred EEecCCCcccceeeecccce-----eeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 34455566667777888777 77777777763 467777432 2234445555655565543211111
Q ss_pred e--eeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591 253 A--CETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKS 330 (353)
Q Consensus 253 ~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~ 330 (353)
. ........-.....-...++|+++..|.|++||.-... .-..+.+....|..+..+.+ |+++++.+.. .
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta~----Gk~ilaTCk~-y 625 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTAN----GKHILATCKN-Y 625 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeecC----CcEEEEeecc-e
Confidence 1 01111111112222236799999999999999965432 23345666778999999998 8887777655 5
Q ss_pred EEEEEcC
Q 018591 331 LRVWWVS 337 (353)
Q Consensus 331 i~iw~~~ 337 (353)
+.+-|+.
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 6666654
No 429
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.19 E-value=4.7 Score=34.11 Aligned_cols=66 Identities=18% Similarity=0.039 Sum_probs=34.0
Q ss_pred EEEcCcEEEEecCCC----------------------eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591 266 VCLVGEFLCSGSADK----------------------SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY 323 (353)
Q Consensus 266 ~~~~~~~l~~~~~dg----------------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~ 323 (353)
...++.+++.|+.+. .+.+||.++.+ ...+..+..-.....+ ..-+ +++++
T Consensus 276 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~-W~~~~~lp~~r~~~~a--v~~~----~~iyv 348 (376)
T PRK14131 276 GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK-WQKVGELPQGLAYGVS--VSWN----NGVLL 348 (376)
T ss_pred eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc-ccccCcCCCCccceEE--EEeC----CEEEE
Confidence 345678888887541 34578887643 3233322211111222 2333 67888
Q ss_pred EccCCC------eEEEEEcCC
Q 018591 324 SGSLDK------SLRVWWVSK 338 (353)
Q Consensus 324 s~~~dg------~i~iw~~~~ 338 (353)
.|+... .|..++.+.
T Consensus 349 ~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 349 IGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EcCCCCCCcEeeeEEEEEEcC
Confidence 887642 455555543
No 430
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=1.6 Score=34.31 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=69.9
Q ss_pred eEEEEcCCC-CeEEeecCCC-cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC-----CCeEEEEecCCC
Q 018591 218 NSVVVSDDG-KWVYGGGSDG-FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA-----DKSIGIWKREAF 290 (353)
Q Consensus 218 ~~~~~~~~~-~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-----dg~i~iw~~~~~ 290 (353)
..++++|.. .-++.+-.-| ...++|....+...........|-..--.++++|.+|.+.-+ -|.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~- 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE- 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc-
Confidence 345555543 2233333333 356778777655545444444555555678889999887654 37899999984
Q ss_pred cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591 291 GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS 326 (353)
Q Consensus 291 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~ 326 (353)
.+..+.++..|.-....+.+.+| |+.|+.+.
T Consensus 150 -~fqrvgE~~t~GiGpHev~lm~D----Grtlvvan 180 (366)
T COG3490 150 -GFQRVGEFSTHGIGPHEVTLMAD----GRTLVVAN 180 (366)
T ss_pred -ccceecccccCCcCcceeEEecC----CcEEEEeC
Confidence 45588889999888899999999 99888774
No 431
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.01 E-value=6.7 Score=35.40 Aligned_cols=108 Identities=18% Similarity=0.121 Sum_probs=54.4
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEE---eeccccccceeeeeeccc-cceeEEEEEEc-CcEEEEecCCCeEEEEecCCCc
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMG---WEGNVEIVRWKLACETKA-HEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
|..+.|||||..++... +|.|.+ -....+.........+.. -...+..+.|. +..|+++..++.-.+|.+.-..
T Consensus 450 Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 450 ISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred cCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCC
Confidence 59999999999887765 466766 332333211111111211 12224566664 3335565555545555543222
Q ss_pred ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591 292 KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL 331 (353)
Q Consensus 292 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i 331 (353)
.......-.....++.+++-++. .++....+|.+
T Consensus 529 ~~~~~~~~~n~~~~v~~vaa~~~------~iyv~~~~g~~ 562 (591)
T PRK13616 529 SNSDALPSRNLSAPVVAVAASPS------TVYVTDARAVL 562 (591)
T ss_pred ccccccCCCCccCceEEEecCCc------eEEEEcCCceE
Confidence 11111011113567888887764 34555666633
No 432
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.94 E-value=4.9 Score=33.65 Aligned_cols=51 Identities=6% Similarity=0.044 Sum_probs=34.7
Q ss_pred CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCc
Q 018591 35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~ 87 (353)
.+...++|+++++....... ...+....|+ ++.++-.. ++.|.+++..++.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 46789999998776654433 4566667776 77777665 4689998876663
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=1.5 Score=41.35 Aligned_cols=122 Identities=12% Similarity=0.008 Sum_probs=74.1
Q ss_pred eccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccce-eeeeecc------ccceeEEEEEEc---CcEEEEec
Q 018591 210 EGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRW-KLACETK------AHEMAVLCVCLV---GEFLCSGS 277 (353)
Q Consensus 210 ~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~-~~~~~~~------~~~~~v~~~~~~---~~~l~~~~ 277 (353)
.-+...++..+...+|+...++ .+.+-.|..||++.-.... .....+. ....-..++.|+ ....++..
T Consensus 96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence 3344444566666777654443 3344478889987632111 0011111 112233455555 34567788
Q ss_pred CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.|+.|++..+..... .+.. ..-....++++|+|. |+.++.|-..|++.-|...-
T Consensus 176 ~dlsl~V~~~~~~~~--~v~s-~p~t~~~Tav~WSpr----GKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQ--NVTS-FPVTNSQTAVLWSPR----GKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred cccchhhhhhhhhhh--hhcc-cCcccceeeEEeccc----cceeeEecCCCeEEEeeccc
Confidence 899999988764332 2222 224567899999999 99999999999998886543
No 434
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.81 E-value=5.7 Score=34.10 Aligned_cols=195 Identities=13% Similarity=0.070 Sum_probs=98.5
Q ss_pred eEEEEEeC--CeEEEe-cCCC----cEEEEEcCCceeeeec-cccCcceEEEEE-eC-C-eEEEEcCC----------Cc
Q 018591 131 ISCLTVYN--GLIYSG-SWDK----TLKVWRVADLKCLESI-KAHDDAVNGLVA-SK-G-IVYSASAD----------GK 189 (353)
Q Consensus 131 i~~~~~~~--~~l~~~-~~dg----~v~iwd~~~~~~~~~~-~~~~~~v~~i~~-~~-~-~l~~~~~d----------g~ 189 (353)
+..+.++| ++++.+ +..| .+++.|+.+++.+... .. .....+.| .+ . ++.+...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 33566777 555543 3334 5999999999776532 22 11223888 33 2 34444322 23
Q ss_pred EEEEeCCCCCcccccceeeeeccCCce-eeEEEEcCCCCeEEeecCC----CcEEEeecccc---ccceeeeeeccccce
Q 018591 190 IKAWGKELGKSHCHSLKGILEGHKDVS-LNSVVVSDDGKWVYGGGSD----GFVMGWEGNVE---IVRWKLACETKAHEM 261 (353)
Q Consensus 190 i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~---~~~~~~~~~~~~~~~ 261 (353)
|+.|++.+.... -...+....... ...+..++++++++..... ..+.+.++... ...+..... ....
T Consensus 204 v~~~~~gt~~~~---d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--~~~~ 278 (414)
T PF02897_consen 204 VYRHKLGTPQSE---DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--REDG 278 (414)
T ss_dssp EEEEETTS-GGG----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--SSSS
T ss_pred EEEEECCCChHh---CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--CCCc
Confidence 778888776511 123444444333 4688899999988754332 34677777663 222222221 1222
Q ss_pred eEEEEEEcCc-EEEEe---cCCCeEEEEecCCCcceEEeccccCCCc--CeEEEEeecCCCCCCeEEEEccCCC--eEEE
Q 018591 262 AVLCVCLVGE-FLCSG---SADKSIGIWKREAFGKLCRVGAITGHEG--PVKCLQASPNAVGGGFLLYSGSLDK--SLRV 333 (353)
Q Consensus 262 ~v~~~~~~~~-~l~~~---~~dg~i~iw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~l~s~~~dg--~i~i 333 (353)
....+...+. +++.. ..++.|...++.+.........+..|.. .+..+.... +.+++..-.++ .|++
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-----~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-----DYLVLSYRENGSSRLRV 353 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-----TEEEEEEEETTEEEEEE
T ss_pred eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-----CEEEEEEEECCccEEEE
Confidence 2223333344 33332 2356777788877653111113344444 455555543 35556555555 5888
Q ss_pred EEcC
Q 018591 334 WWVS 337 (353)
Q Consensus 334 w~~~ 337 (353)
+++.
T Consensus 354 ~~~~ 357 (414)
T PF02897_consen 354 YDLD 357 (414)
T ss_dssp EETT
T ss_pred EECC
Confidence 8888
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.77 E-value=7.5 Score=36.48 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=44.7
Q ss_pred EEEEeCCEEEEecCCCcEEEEEcccCccceeEEe--eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591 61 AVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLV--DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN 138 (353)
Q Consensus 61 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 138 (353)
+++-.++.++.|+.+|.+.+|.+........... ..... ... -+..+|..+...+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~---------------------~~~--~~kk~i~~l~~~~ 77 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKF---------------------EKE--FSKKPINKLLVCA 77 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHH---------------------hhh--hccchhHHHhhcc
Confidence 4444599999999999999999876542111110 00000 000 1245666666666
Q ss_pred -CeEEEecCCCcEEEEEcCCcee
Q 018591 139 -GLIYSGSWDKTLKVWRVADLKC 160 (353)
Q Consensus 139 -~~l~~~~~dg~v~iwd~~~~~~ 160 (353)
..++-.-.|+.|.++++.+.+.
T Consensus 78 ~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 78 SLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred hhcchheecCCcceeeecCcccc
Confidence 3333344567788888877655
No 436
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.69 E-value=6 Score=34.09 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=25.2
Q ss_pred cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 304 ~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
..|.++...+. .+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~----r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPS----RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETT----TTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCC----cCEEEEEeCCCcEEEEEEeC
Confidence 34999999998 78999999999999999985
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.59 E-value=3.6 Score=35.35 Aligned_cols=141 Identities=9% Similarity=0.102 Sum_probs=78.2
Q ss_pred EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--------CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591 29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT 100 (353)
Q Consensus 29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 100 (353)
+..|+....++--|++-|+.+..+..|...+...... .+.|+-.+.. .|.-.|.+-.. ........-
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~g-NKi~v~esK--- 557 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARG-NKIKVVESK--- 557 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeeccc-ceEEecccccC-Cceeeeeeh---
Confidence 4445556677777888888888888776654332221 2344444443 44333443322 111110000
Q ss_pred cceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eC
Q 018591 101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SK 178 (353)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~ 178 (353)
-+ .......|..... +++++|+..|.|++||--.......+++-...|..+.. .+
T Consensus 558 ----------------------dY-~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 558 ----------------------DY-KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred ----------------------hc-cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecC
Confidence 00 1112223333333 89999999999999995433344456667788888888 44
Q ss_pred CeEEEEcCCCcEEEEeCCC
Q 018591 179 GIVYSASADGKIKAWGKEL 197 (353)
Q Consensus 179 ~~l~~~~~dg~i~iwd~~~ 197 (353)
+..+.+.....+.+-|++-
T Consensus 615 Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 615 GKHILATCKNYLLLTDVPI 633 (776)
T ss_pred CcEEEEeecceEEEEeccc
Confidence 4333333456788877653
No 438
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=92.34 E-value=0.59 Score=24.32 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=12.2
Q ss_pred EEEECCcEEEEEeCCCcEEEEeCC
Q 018591 21 SLALCGEFILSASQGKDIIVWQQP 44 (353)
Q Consensus 21 ~~~~~~~~l~s~~~dg~v~vwd~~ 44 (353)
++++.+..++.++.||.+..+|.+
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT
T ss_pred CCEEECCEEEEEcCCCEEEEEeCC
Confidence 344555556666666666666543
No 439
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=12 Score=36.49 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=82.9
Q ss_pred cCCCcEEEEEcCCceeeeeccccCcceEEEEE---eCC-------eEEEEcCCCcEEEEeCCCCCc--ccccceeeeec-
Q 018591 145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA---SKG-------IVYSASADGKIKAWGKELGKS--HCHSLKGILEG- 211 (353)
Q Consensus 145 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~---~~~-------~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~- 211 (353)
+.|+.+.+|+.+++.....+.+-...|..+.. .++ +++..+.--.|.++-+.-.+. ........+..
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 46789999999998777888777777777766 333 344444445566654432210 00011111211
Q ss_pred cCCceeeEEEEcCCCCeEEeecCCCcEEEeecc----cc---c-c-------------ceeeeeeccccceeEEEEEEc-
Q 018591 212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN----VE---I-V-------------RWKLACETKAHEMAVLCVCLV- 269 (353)
Q Consensus 212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~---~-~-------------~~~~~~~~~~~~~~v~~~~~~- 269 (353)
-.+..|+++....+|+.+++|- || .+|.+. .+ + . ...+......+..+|..+..|
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2244468888888888777665 44 344321 11 0 0 001111112445678788776
Q ss_pred -CcEEEEecCCCeEEEEecCC
Q 018591 270 -GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 270 -~~~l~~~~~dg~i~iw~~~~ 289 (353)
.+.+.+-+..|+|++|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 56788889999999999976
No 440
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.18 E-value=6.1 Score=32.94 Aligned_cols=98 Identities=16% Similarity=0.104 Sum_probs=48.2
Q ss_pred CCCCeEEeecCCC------cEEEeeccccccceeeeeecccc-----c--eeEEEEEEcCcEEEEecCC-----------
Q 018591 224 DDGKWVYGGGSDG------FVMGWEGNVEIVRWKLACETKAH-----E--MAVLCVCLVGEFLCSGSAD----------- 279 (353)
Q Consensus 224 ~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~-----~--~~v~~~~~~~~~l~~~~~d----------- 279 (353)
-++++.+.|+.+. .+..|++......|.....+... . ........++++.+.|+.+
T Consensus 199 ~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~ 278 (346)
T TIGR03547 199 KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNG 278 (346)
T ss_pred ECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcC
Confidence 3566777766431 34556654433344443333211 1 1222345678888888753
Q ss_pred -----------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 280 -----------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 280 -----------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
..+.+||.++.+ ...+..+.... -...+..-+ +++++.|+.+
T Consensus 279 ~~~~~~~~~~~~~~e~yd~~~~~-W~~~~~lp~~~--~~~~~~~~~----~~iyv~GG~~ 331 (346)
T TIGR03547 279 KLYAHEGLIKAWSSEVYALDNGK-WSKVGKLPQGL--AYGVSVSWN----NGVLLIGGEN 331 (346)
T ss_pred CccccCCCCceeEeeEEEecCCc-ccccCCCCCCc--eeeEEEEcC----CEEEEEeccC
Confidence 146788877542 32333322111 111222333 7788888765
No 441
>PLN02193 nitrile-specifier protein
Probab=92.08 E-value=7.8 Score=33.97 Aligned_cols=192 Identities=11% Similarity=0.005 Sum_probs=89.2
Q ss_pred eCCeEEEecCC-------CcEEEEEcCCceeeeecc-c-cCc----ceEEEEEeCCeEEEEcCC-----CcEEEEeCCCC
Q 018591 137 YNGLIYSGSWD-------KTLKVWRVADLKCLESIK-A-HDD----AVNGLVASKGIVYSASAD-----GKIKAWGKELG 198 (353)
Q Consensus 137 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~-~-~~~----~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~ 198 (353)
....++.|+.+ ..+..||+.+.+-...-. + ... ....+...+.+++.|+.+ ..+..||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 33566666643 347788887654322110 0 011 111222344466666654 35778888776
Q ss_pred CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeee---ccccceeEEEEEEcC
Q 018591 199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACE---TKAHEMAVLCVCLVG 270 (353)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~ 270 (353)
+-....... .......-.+++. -++++.+.|+.++ .+..||+.+.. |..... .............++
T Consensus 255 ~W~~l~~~~--~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~~~g 329 (470)
T PLN02193 255 EWKLLTPVE--EGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEVVQG 329 (470)
T ss_pred EEEEcCcCC--CCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEEECC
Confidence 421111110 0011110012222 3456666666543 46677877652 322211 111111222334567
Q ss_pred cEEEEecCC----CeEEEEecCCCcceEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCC--------------Ce
Q 018591 271 EFLCSGSAD----KSIGIWKREAFGKLCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLD--------------KS 330 (353)
Q Consensus 271 ~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~d--------------g~ 330 (353)
++++.|+.+ ..+.+||+.+.+ ...+.... .......+++ .-+ +++++.|+.+ ..
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~-~~~----~~iyv~GG~~~~~~~~~~~~~~~~nd 403 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA-AVG----KHIVIFGGEIAMDPLAHVGPGQLTDG 403 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE-EEC----CEEEEECCccCCccccccCccceecc
Confidence 777777755 468899988743 33332211 0111111222 223 6788888853 24
Q ss_pred EEEEEcCCC
Q 018591 331 LRVWWVSKQ 339 (353)
Q Consensus 331 i~iw~~~~~ 339 (353)
+.++|+.+.
T Consensus 404 v~~~D~~t~ 412 (470)
T PLN02193 404 TFALDTETL 412 (470)
T ss_pred EEEEEcCcC
Confidence 677777654
No 442
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.97 E-value=1 Score=37.86 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=96.0
Q ss_pred ccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee-EEEEcCCCCeEEeecCCCcEEE
Q 018591 164 IKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN-SVVVSDDGKWVYGGGSDGFVMG 240 (353)
Q Consensus 164 ~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 240 (353)
+......|..+-. +++ .+..-+. .++.++++.+...+..++...-.+.....|+ .+..-..|.-+.+++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4344456666666 444 3333332 6788888876552222222111121111111 2222334566888899998888
Q ss_pred e-eccc-cccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591 241 W-EGNV-EIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV 316 (353)
Q Consensus 241 ~-d~~~-~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 316 (353)
| |.+. +.+.......++-...++..+.++ .+-+++-+.+|++..+.....+. .+ .+.--..+.-+++||.
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL--~~~~~~~~~~~~~Sp~-- 368 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LL--FERAYQAPQLVAMSPN-- 368 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--ee--hhhhhcCcceeeeCcc--
Confidence 7 4433 223334444444445566666665 45677788899998887554332 11 1122235677899999
Q ss_pred CCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591 317 GGGFLLYSGSLDKSLRVWWVSKQSST 342 (353)
Q Consensus 317 ~~~~~l~s~~~dg~i~iw~~~~~~~~ 342 (353)
+.+|++- +.|.++++.+++..+.
T Consensus 369 --~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 369 --QAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred --cchheee-cCCceEEEEecCCCCC
Confidence 8888876 4568999999887543
No 443
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.89 E-value=7.2 Score=33.14 Aligned_cols=146 Identities=9% Similarity=0.016 Sum_probs=64.5
Q ss_pred CcEEEEEcCCceeeeeccccCc---ceEEEEEe--CCeEEEEc--------------------CCCcEEEEeCCCCCccc
Q 018591 148 KTLKVWRVADLKCLESIKAHDD---AVNGLVAS--KGIVYSAS--------------------ADGKIKAWGKELGKSHC 202 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~---~v~~i~~~--~~~l~~~~--------------------~dg~i~iwd~~~~~~~~ 202 (353)
|-+.++|-++.+.....+.... .-+.+-+. .+.+++.. ...++.+||+.+.+
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--- 233 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--- 233 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE---
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc---
Confidence 5677888777777666643221 22333332 23455443 34689999999987
Q ss_pred ccceeeeeccC-CceeeEEEEcC--CCCeEEee-cCCCcEEEeec-cccccceeeeeeccc-----------------cc
Q 018591 203 HSLKGILEGHK-DVSLNSVVVSD--DGKWVYGG-GSDGFVMGWEG-NVEIVRWKLACETKA-----------------HE 260 (353)
Q Consensus 203 ~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~-~~~~~~~~~~~~~~~-----------------~~ 260 (353)
+.+.+.-.. ......+.|.. +..+=+++ .-.+.|..|-- ..+.-..+.+..... -.
T Consensus 234 --~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 234 --LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp --EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred --EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 566555443 22336677754 34443333 23444554433 333211111111111 02
Q ss_pred eeEEE--EEEcCcEEEEec-CCCeEEEEecCCCcceEEecc
Q 018591 261 MAVLC--VCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGA 298 (353)
Q Consensus 261 ~~v~~--~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 298 (353)
.-++. ++.|.++|.... ..|.|+.||+.....++.+..
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gq 352 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQ 352 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeE
Confidence 23444 445677776554 699999999998877766654
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.84 E-value=1.1 Score=23.74 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=24.2
Q ss_pred CceEEEEEC---C--cEEEEEeCCCcEEEEeCCC
Q 018591 17 GSVSSLALC---G--EFILSASQGKDIIVWQQPD 45 (353)
Q Consensus 17 ~~v~~~~~~---~--~~l~s~~~dg~v~vwd~~~ 45 (353)
++|.++.|+ + ++|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999997 3 6888888889999999874
No 445
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.79 E-value=5.8 Score=32.85 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CceeeEEEEcCCCCeEEeecCCCcEEEeeccccc--cceeeeeeccccceeEEEEEEcC-----cEEEEecCCC------
Q 018591 214 DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI--VRWKLACETKAHEMAVLCVCLVG-----EFLCSGSADK------ 280 (353)
Q Consensus 214 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg------ 280 (353)
..+ ++|+|.|+++++++-- .|.|++++..... ..................+++++ .+|.+.....
T Consensus 2 ~~P-~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 2 NNP-RSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SSE-EEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CCc-eEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Q ss_pred ---eEEEEecCCC-----cceEEeccccC---CCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591 281 ---SIGIWKREAF-----GKLCRVGAITG---HEGPVKCLQASPNAVGGGFLLYSGSLDK 329 (353)
Q Consensus 281 ---~i~iw~~~~~-----~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~l~s~~~dg 329 (353)
.|.-|..... .....+..+.. ....-..|.|.|| |.+.++.+..+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD----G~LYvs~G~~~ 135 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD----GKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TT----SEEEEEEB-TT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCC----CcEEEEeCCCC
No 446
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=8.7 Score=37.27 Aligned_cols=144 Identities=18% Similarity=0.246 Sum_probs=85.9
Q ss_pred EeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----C------CEEEEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591 32 ASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----G------NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK 101 (353)
Q Consensus 32 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 101 (353)
.+-|+.+.+|+.+++.....+.+-+..|..+..- | ++++..+.--.|.++-+.-.+....... +..
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~--f~~-- 170 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI--FNT-- 170 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc--ccc--
Confidence 3467899999999988888888777777776653 1 2334333444677766543321000000 000
Q ss_pred ceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEc--CCc---e-e--------------
Q 018591 102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRV--ADL---K-C-------------- 160 (353)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~--~~~---~-~-------------- 160 (353)
.-.+......|+|+.... +.++-++.||.|+-.-. ..+ + +
T Consensus 171 -------------------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv 231 (1311)
T KOG1900|consen 171 -------------------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLV 231 (1311)
T ss_pred -------------------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence 000012345788888555 78888888885542211 111 1 1
Q ss_pred --eeecc-ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCC
Q 018591 161 --LESIK-AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELG 198 (353)
Q Consensus 161 --~~~~~-~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~ 198 (353)
+-.+. .+..+|..+.. +.+.+.+-+..|+|.+||+...
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 11122 45779999999 4458889999999999999763
No 447
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.66 E-value=3 Score=35.40 Aligned_cols=71 Identities=13% Similarity=-0.041 Sum_probs=47.4
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE----EcC----------------c-EEEE
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC----LVG----------------E-FLCS 275 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~----~~~----------------~-~l~~ 275 (353)
+.+++.+|++++.++...-|.|.++|+..+ ......++....-+.+- ... . +++-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~----~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARG----IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCC----hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 488999999999999988899999999887 33333333332222211 111 1 2334
Q ss_pred ecCCCeEEEEecCCCc
Q 018591 276 GSADKSIGIWKREAFG 291 (353)
Q Consensus 276 ~~~dg~i~iw~~~~~~ 291 (353)
+-.-|.|.||.++++.
T Consensus 386 aprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 386 APRRGILEVWSMRQGP 401 (415)
T ss_pred eccCCeEEEEecCCCC
Confidence 5567889999988776
No 448
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=91.51 E-value=0.7 Score=21.63 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=18.5
Q ss_pred ceEEEEECCcEEEEEeCCCcEEEEe
Q 018591 18 SVSSLALCGEFILSASQGKDIIVWQ 42 (353)
Q Consensus 18 ~v~~~~~~~~~l~s~~~dg~v~vwd 42 (353)
.|.+++....+++.+.+-+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 5677777777777777777777763
No 449
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.43 E-value=8 Score=32.75 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=22.5
Q ss_pred EEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC
Q 018591 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD 279 (353)
Q Consensus 238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 279 (353)
+.+||..+. .|.....+........++..++.+++.|+..
T Consensus 314 ~e~yd~~~~--~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNG--KWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCC--cccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 457888765 3333333333233334566678888888754
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.20 E-value=3.6 Score=28.37 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=42.6
Q ss_pred EEEEC--CcEEEEEeCCCcEEEEeCCCce--------eeEEeccCceeeEEEEEe-------CCEEEEecCCCcEEEEEc
Q 018591 21 SLALC--GEFILSASQGKDIIVWQQPDLR--------MFTKFGHGDGSVKAVVTV-------GNKVFTAHQDSRIRVWKV 83 (353)
Q Consensus 21 ~~~~~--~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~~w~~ 83 (353)
.-.|+ ..-|+.++.-|+|.|.+..... .+..+.- ...|++|+-- .+.|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34565 4478888888999999865332 3333333 4466666542 456777766 48999999
Q ss_pred ccCc
Q 018591 84 SRSS 87 (353)
Q Consensus 84 ~~~~ 87 (353)
+...
T Consensus 81 ~~N~ 84 (136)
T PF14781_consen 81 ENNS 84 (136)
T ss_pred ccCc
Confidence 8876
No 451
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.06 E-value=8.6 Score=32.45 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=101.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEeccCc--eeeEEE-EEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGD--GSVKAV-VTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD 102 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~-~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 102 (353)
+..++.+..||.|.-.|.++++.+.....-. ..+..- ......++.++.+|.+...|.++++..-.....
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~------- 140 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVG------- 140 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecC-------
Confidence 5566666888989989998888665433221 122221 122566888899997777777655521111110
Q ss_pred eeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCc---ceE-EEEEeC
Q 018591 103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDD---AVN-GLVASK 178 (353)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~-~i~~~~ 178 (353)
+..............+..++.++.+.-.|..+++.......... .+. ......
T Consensus 141 -----------------------~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 197 (370)
T COG1520 141 -----------------------GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS 197 (370)
T ss_pred -----------------------CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec
Confidence 00000001111124555555778888888888887666433211 111 111345
Q ss_pred CeEEEEcC--CCcEEEEeCCCCCcccccceeeeeccCCc----eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceee
Q 018591 179 GIVYSASA--DGKIKAWGKELGKSHCHSLKGILEGHKDV----SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKL 252 (353)
Q Consensus 179 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 252 (353)
+.++.+.. ++.+.-.|..++............+.... .+..-...-+ ..+..++.++.+...|..+++..|+.
T Consensus 198 ~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 198 GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEE
Confidence 56666665 66677778877762221111111111100 0000000011 22456667787888888888666655
Q ss_pred ee
Q 018591 253 AC 254 (353)
Q Consensus 253 ~~ 254 (353)
..
T Consensus 277 ~~ 278 (370)
T COG1520 277 PA 278 (370)
T ss_pred ec
Confidence 44
No 452
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.00 E-value=8.3 Score=32.16 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=22.6
Q ss_pred CcEEEeeccccccceeeeeeccc-cceeEEEEEEcCcEEEEecCC
Q 018591 236 GFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGEFLCSGSAD 279 (353)
Q Consensus 236 g~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d 279 (353)
..+.+||..++ .|.....+.. ..........++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~--~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTN--QWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCC--ceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 45788888775 3443333321 122223344567777777753
No 453
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.65 E-value=14 Score=34.24 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=27.7
Q ss_pred ecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCC
Q 018591 126 EHADSISCLTVYN-----GLIYSGSWDKTLKVWRVAD 157 (353)
Q Consensus 126 ~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~ 157 (353)
.+...|..+.|+| ..|++-..|+.+++||+..
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 4567899999998 6889999999999999965
No 454
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.48 E-value=9.5 Score=32.00 Aligned_cols=192 Identities=20% Similarity=0.152 Sum_probs=104.4
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE------eCC--eEEEEc-CC---CcEEEEeCCCCCcccccce
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA------SKG--IVYSAS-AD---GKIKAWGKELGKSHCHSLK 206 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~------~~~--~l~~~~-~d---g~i~iwd~~~~~~~~~~~~ 206 (353)
.+++....++-+.+||+. ++.++.+. .+.++.+.. .+. -|+.++ .+ .+|++|.+..... .+
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g----~L 141 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG----EL 141 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT----EE
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC----cc
Confidence 678888888999999985 66666664 344555444 222 233333 32 4699997764221 11
Q ss_pred eeee-------ccCCceeeEEEE--cC-CCC-eEEeecCCCcEEEeecccc---ccceeeeeeccccceeEEEEEEc--C
Q 018591 207 GILE-------GHKDVSLNSVVV--SD-DGK-WVYGGGSDGFVMGWEGNVE---IVRWKLACETKAHEMAVLCVCLV--G 270 (353)
Q Consensus 207 ~~~~-------~~~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~v~~~~~~--~ 270 (353)
..+. .....+ ..+++ +| ++. ++++...+|.+..|.+... ....++...+.... .+-.+..| .
T Consensus 142 ~~v~~~~~p~~~~~~e~-yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVDDe~ 219 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEP-YGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVDDET 219 (381)
T ss_dssp EE-CBTTC-EE-SSSSE-EEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEETTT
T ss_pred eEcCCCCcccccccccc-eeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEeccc
Confidence 1111 111122 45554 44 344 6677888999998887632 22334555555433 34444444 5
Q ss_pred cEEEEecCCCeEEEEecCCCc--ceEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591 271 EFLCSGSADKSIGIWKREAFG--KLCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 271 ~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
..|+.+-++--|.-|+.+... ....+.... +....|-.|+.-....+.|.+|+|.=.+++..||+.+..
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 688889998888888776332 222332222 244567788876543333567777777889999998754
No 455
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.48 E-value=11 Score=32.59 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.3
Q ss_pred eeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591 217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245 (353)
Q Consensus 217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 245 (353)
|..++..+..+.+++...+|.|.+|++..
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 47888888889999999999999999975
No 456
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.35 E-value=1.2 Score=21.79 Aligned_cols=27 Identities=4% Similarity=0.060 Sum_probs=21.1
Q ss_pred CcEEEEEeCCCcEEEEeCCCceeeEEe
Q 018591 26 GEFILSASQGKDIIVWQQPDLRMFTKF 52 (353)
Q Consensus 26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~ 52 (353)
+..++.++.+|.+...|..+|+.+..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 446777888899999999888877653
No 457
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.61 E-value=9.2 Score=30.51 Aligned_cols=163 Identities=7% Similarity=-0.007 Sum_probs=96.8
Q ss_pred ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCc
Q 018591 126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKS 200 (353)
Q Consensus 126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~ 200 (353)
+-...+.++.|+| +.|++......-.++=..+|+.+.++.-. -...-.|.+ .++ +.++--.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 4555699999999 67777776676667766778888877432 122345666 444 444445577787776655431
Q ss_pred cc--cc---ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec-cc-----cceeEEEEEEc
Q 018591 201 HC--HS---LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KA-----HEMAVLCVCLV 269 (353)
Q Consensus 201 ~~--~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~ 269 (353)
.. .. .+......... ...++|+|..+.|+.+-+-.-+.||............... .. .-..+..+.++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~G-fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKG-FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred EEeccceEEeccccCCCCcC-ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 10 00 11111111222 3789999999999888888888888776442111111000 00 11234455555
Q ss_pred ---CcEEEEecCCCeEEEEecCC
Q 018591 270 ---GEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 270 ---~~~l~~~~~dg~i~iw~~~~ 289 (353)
+.+|+-+.+++.+.-.|...
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC
Confidence 66788888888888887654
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.54 E-value=12 Score=31.87 Aligned_cols=154 Identities=11% Similarity=0.048 Sum_probs=87.8
Q ss_pred CCceeeEEeccCce------eeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591 44 PDLRMFTKFGHGDG------SVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT 116 (353)
Q Consensus 44 ~~~~~~~~~~~~~~------~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (353)
.+|.....+-+|.. .-+.+.|+ .+..+.+-..|.+.-|-.............
T Consensus 4 gsGalyhelihhPslfcnipesngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfd--------------------- 62 (657)
T KOG2377|consen 4 GSGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFD--------------------- 62 (657)
T ss_pred CCcceEEEEecCchhhccCCcccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceee---------------------
Confidence 34555555555532 33456666 444444445566677766554322111111
Q ss_pred cccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee----eccccCcceEEEEEeCC-eEEEEcCCCc
Q 018591 117 RRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE----SIKAHDDAVNGLVASKG-IVYSASADGK 189 (353)
Q Consensus 117 ~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~-~l~~~~~dg~ 189 (353)
....++|.++.|++ +.+++--.+++|.+.+....+... +-+.....|....|.++ .++..... .
T Consensus 63 --------m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~-G 133 (657)
T KOG2377|consen 63 --------MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQ-G 133 (657)
T ss_pred --------ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecC-C
Confidence 13556999999999 788888899999999974322222 22333456888899444 45544443 3
Q ss_pred EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591 190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
+-+|.....+ ...+..+.+.-.+ +-..|.++.+.+..+
T Consensus 134 ~e~y~v~pek----rslRlVks~~~nv-nWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 134 IEFYQVLPEK----RSLRLVKSHNLNV-NWYMYCPETAVILLS 171 (657)
T ss_pred eEEEEEchhh----hhhhhhhhcccCc-cEEEEccccceEeee
Confidence 5666554333 1334444555544 777888877654443
No 459
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=89.47 E-value=1.4 Score=22.84 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=18.3
Q ss_pred EEEEeCCEEEEecCCCcEEEEEccc
Q 018591 61 AVVTVGNKVFTAHQDSRIRVWKVSR 85 (353)
Q Consensus 61 ~~~~~~~~l~s~~~dg~i~~w~~~~ 85 (353)
++...+..++.++.||.+...|.++
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT-
T ss_pred CCEEECCEEEEEcCCCEEEEEeCCC
Confidence 3466688999999999999998753
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.40 E-value=0.059 Score=45.11 Aligned_cols=135 Identities=9% Similarity=0.043 Sum_probs=86.2
Q ss_pred EEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591 134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHCHSLKGI 208 (353)
Q Consensus 134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 208 (353)
..|.+ ..++.++.+..+..||- .++...... .++....++|+ .+ .++.+-..+.+.+||+.+.. ...
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey------tqq 111 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY------TQQ 111 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh------HHH
Confidence 34444 45888888888999984 444444442 24555667772 22 56667778999999998765 122
Q ss_pred eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCC
Q 018591 209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADK 280 (353)
Q Consensus 209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg 280 (353)
++......-.-+.|++....++.+...|.+.+++.... +.......|...++++++. .++.+.++.|.
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccceeeecCcHH
Confidence 22111111134788998899999999999999998776 3333333467777777776 45555555543
No 461
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.31 E-value=12 Score=31.52 Aligned_cols=101 Identities=14% Similarity=0.076 Sum_probs=49.8
Q ss_pred eEEEEcCCCCeEEeecCCCcEEEeeccccc----cceeeeeeccc------cceeEEEEEEcCcEEEEecC---------
Q 018591 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEI----VRWKLACETKA------HEMAVLCVCLVGEFLCSGSA--------- 278 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~------~~~~v~~~~~~~~~l~~~~~--------- 278 (353)
..+++.+++ |+++......++.|..... ....+...+.. |...-..+.++|.+.++-+.
T Consensus 75 ~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 75 TGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred cceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 789999988 4444444433343443211 11112222221 22334555567776554441
Q ss_pred ----------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591 279 ----------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328 (353)
Q Consensus 279 ----------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d 328 (353)
.|.|.-++....+ ...+ -.++ .....++|+|+ |+++++-..+
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~-~e~~--a~G~-rnp~Gl~~d~~----G~l~~tdn~~ 204 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGK-LRVV--AHGF-QNPYGHSVDSW----GDVFFCDNDD 204 (367)
T ss_pred CCccCcccccCceEEEEecCCCe-EEEE--ecCc-CCCccceECCC----CCEEEEccCC
Confidence 1445555555432 2121 1232 34578999998 8887765543
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.28 E-value=7.9 Score=29.32 Aligned_cols=152 Identities=9% Similarity=0.036 Sum_probs=81.0
Q ss_pred EEEEeC-CeEEEecCCCcEEEEEcCC--ceeeeeccccCcceEEEEE--eCCeEEEEcCCC------cEEEE-eCCCCCc
Q 018591 133 CLTVYN-GLIYSGSWDKTLKVWRVAD--LKCLESIKAHDDAVNGLVA--SKGIVYSASADG------KIKAW-GKELGKS 200 (353)
Q Consensus 133 ~~~~~~-~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg------~i~iw-d~~~~~~ 200 (353)
.+...+ +.|+.+...+.|.+|++.+ .+...+|.. -+.|..+.+ .++++++--.+. .+|+| |.+....
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 344445 6676667778899999883 345556643 478889988 566888764432 45665 2222210
Q ss_pred ccccc--------------------eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee--eeeecc-
Q 018591 201 HCHSL--------------------KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK--LACETK- 257 (353)
Q Consensus 201 ~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~- 257 (353)
..... ....+-.......+++..|...-|+.|+ ++.+.+|.+........ ....+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~ 179 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFER 179 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechh
Confidence 00001 1111122222237888888544455555 45689998876532110 001111
Q ss_pred -----ccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591 258 -----AHEMAVLCVCLVGEFLCSGSADKSIGIWKR 287 (353)
Q Consensus 258 -----~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~ 287 (353)
........++..+.++|..+. -.++++.+
T Consensus 180 ~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 180 SLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred hhhheecCceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence 112234555666778877654 44666654
No 463
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.10 E-value=9.9 Score=30.21 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=58.8
Q ss_pred EEEEeC---CeEEEecCCCc-EEEEEcCCceeeeeccccCcc--eEEEEE-eCCeEEEEcC------CCcEEEEeCCCCC
Q 018591 133 CLTVYN---GLIYSGSWDKT-LKVWRVADLKCLESIKAHDDA--VNGLVA-SKGIVYSASA------DGKIKAWGKELGK 199 (353)
Q Consensus 133 ~~~~~~---~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~--v~~i~~-~~~~l~~~~~------dg~i~iwd~~~~~ 199 (353)
.|.++| .-++.+-.-|+ ..++|....+....+...++. .-.=.| +++.++-+++ -|.|-+||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 567777 55666666665 567888776655554322111 111233 3343333332 3679999998553
Q ss_pred cccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591 200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG 233 (353)
Q Consensus 200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 233 (353)
.....+..|.-.+ ..+.+.+||+.++.+.
T Consensus 152 ----qrvgE~~t~GiGp-Hev~lm~DGrtlvvan 180 (366)
T COG3490 152 ----QRVGEFSTHGIGP-HEVTLMADGRTLVVAN 180 (366)
T ss_pred ----ceecccccCCcCc-ceeEEecCCcEEEEeC
Confidence 3455677777777 8899999999988764
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.69 E-value=11 Score=30.24 Aligned_cols=116 Identities=13% Similarity=0.250 Sum_probs=63.1
Q ss_pred CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec------CCCcEEEeeccccccceeeeee-c-ccc
Q 018591 188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG------SDGFVMGWEGNVEIVRWKLACE-T-KAH 259 (353)
Q Consensus 188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-~-~~~ 259 (353)
..|++||..+.+ -...-.+ -...|..+.|..+.+.++.|. ....+..||..... +..... . ..-
T Consensus 16 ~~lC~yd~~~~q-----W~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTDNSQ-----WSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECCCCE-----eecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccC
Confidence 469999988775 2222222 334469999987766776664 45678889988762 222211 1 122
Q ss_pred ceeEEEEEE---cC-cEEEEec-CCC--eEEEEecCCCcceEEecc-ccCCCcCeEEEEeecC
Q 018591 260 EMAVLCVCL---VG-EFLCSGS-ADK--SIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPN 314 (353)
Q Consensus 260 ~~~v~~~~~---~~-~~l~~~~-~dg--~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 314 (353)
.+++..+.+ ++ ++.++|. .+| .|..||=.... .+.. .......|..+.+-|-
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~---~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS---SIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE---eccccccCCCCEEEEEEEEec
Confidence 456666666 43 3444443 333 45566543332 3333 2223445666665554
No 465
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.36 E-value=6.9 Score=28.75 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=28.3
Q ss_pred cCeEEEEeecCC--CCCCeEEEEccCCCeEEEEEcCCC
Q 018591 304 GPVKCLQASPNA--VGGGFLLYSGSLDKSLRVWWVSKQ 339 (353)
Q Consensus 304 ~~v~~~~~~~~~--~~~~~~l~s~~~dg~i~iw~~~~~ 339 (353)
..|.+++|||.. +..+.+|++.+.+|.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 479999999941 122578999999999999987643
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.35 E-value=9.1 Score=28.84 Aligned_cols=174 Identities=10% Similarity=0.004 Sum_probs=84.8
Q ss_pred eEEEecC--CCcEEEEEcCCceeeeeccccCcceE--EEEEeCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 140 LIYSGSW--DKTLKVWRVADLKCLESIKAHDDAVN--GLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 140 ~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~--~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
++.+.+. ...|+.||+.+++.+..-.-....+. .+.-.++ .....-.+|.-..+|.++-+ ....+.-...
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-----~lg~~~y~Ge 132 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-----ELGRFSYEGE 132 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-----hhcccccCCc
Confidence 4444443 34699999998887655432211111 1111222 33334457778888888766 3333332222
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCeEEEEecCCCcc
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
. ..++ .|++.|+.++...+++.-|.++-....+......+.+ .....+.+ +|...|-.-.+..|...+.++++.
T Consensus 133 G--WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 G--WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred c--eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcE
Confidence 1 3333 4555677776666777777665432222222222211 11122222 244333333333344444444431
Q ss_pred e---------EEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591 293 L---------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSG 325 (353)
Q Consensus 293 ~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~ 325 (353)
. ..+..-..|....+.+++.|. .++++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~---~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQ---QDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCc---CCeEEEec
Confidence 1 112222335567889999998 14677776
No 467
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=87.98 E-value=6 Score=31.00 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=49.3
Q ss_pred ecCCceEEEEEeC---------CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE----e--CCeEEEEcCCCcE
Q 018591 126 EHADSISCLTVYN---------GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA----S--KGIVYSASADGKI 190 (353)
Q Consensus 126 ~~~~~i~~~~~~~---------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~----~--~~~l~~~~~dg~i 190 (353)
.+...|+||+.-. ..|+.|+++|.|.+.|......+.+++-..-++ .+.. . +..++.++.||.|
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEE
Confidence 4567788888643 689999999999999998877777766544444 3322 2 2378899999988
Q ss_pred EEE
Q 018591 191 KAW 193 (353)
Q Consensus 191 ~iw 193 (353)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 764
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.84 E-value=16 Score=35.39 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=39.7
Q ss_pred cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591 169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE 246 (353)
Q Consensus 169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 246 (353)
.++.+..+ .++.++.+...+.+.+|+..... ....+... ....++++..++++..||.+..||...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 199 YESLQVLYYSPTKILIGFNRGLVVIKDRASKY-----VQSAYLPN------GQLESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cccceeeeecCCCcceeeeeeeeeehhccccc-----chhhcccc------cccCccCCceEEEEEecCCEEeeecCCC
Confidence 34444444 44445555555666666554332 11111111 1112778999999999999999999886
No 469
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=87.29 E-value=1.8 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.2
Q ss_pred eEEEecCCCcEEEEEcCCceeeeeccc
Q 018591 140 LIYSGSWDKTLKVWRVADLKCLESIKA 166 (353)
Q Consensus 140 ~l~~~~~dg~v~iwd~~~~~~~~~~~~ 166 (353)
.++.++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466778999999999999998887753
No 470
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.15 E-value=2.3 Score=20.68 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=19.7
Q ss_pred CeEEEecCCCcEEEEEcCCceeeeec
Q 018591 139 GLIYSGSWDKTLKVWRVADLKCLESI 164 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~~~~~ 164 (353)
+.++.++.+|.+..+|.++++.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 46777888888888888887776543
No 471
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.43 E-value=15 Score=29.13 Aligned_cols=147 Identities=14% Similarity=-0.070 Sum_probs=75.8
Q ss_pred ceEEEEEeC--CeEEEEc---CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee-c
Q 018591 170 AVNGLVASK--GIVYSAS---ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE-G 243 (353)
Q Consensus 170 ~v~~i~~~~--~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~ 243 (353)
.+.+.++++ +.++... ....++++...... .....+. .+..-.|++++...+....+...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~------~~~~~g~---~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV------RPVLTGG---SLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc------eeeccCC---ccccccccCCCCEEEEEcCCCceEEEEec
Confidence 566777732 3444333 33445555544332 2222222 247788999987777767666666664 2
Q ss_pred cccccceeeeeecccc-ceeEEEEEEcCcEEEEec---CCCeEEEEecCCCcc--eE----EeccccCCCcCeEEEEeec
Q 018591 244 NVEIVRWKLACETKAH-EMAVLCVCLVGEFLCSGS---ADKSIGIWKREAFGK--LC----RVGAITGHEGPVKCLQASP 313 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~--~~----~~~~~~~h~~~v~~~~~~~ 313 (353)
..+............. ......++++|..++.-. .++.|.+=-+..... .. .+.........++++.|.+
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 2222111111111111 233345556787766544 457777765432211 11 1111223346799999999
Q ss_pred CCCCCCeEEEEccCCC
Q 018591 314 NAVGGGFLLYSGSLDK 329 (353)
Q Consensus 314 ~~~~~~~~l~s~~~dg 329 (353)
+ +.+++.+...+
T Consensus 176 ~----~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 D----STLVVLGRSAG 187 (253)
T ss_pred C----CEEEEEeCCCC
Confidence 8 77766665544
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.15 E-value=4.4 Score=36.36 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.5
Q ss_pred cCcEEEEecCCCeEEEEecCCCcc
Q 018591 269 VGEFLCSGSADKSIGIWKREAFGK 292 (353)
Q Consensus 269 ~~~~l~~~~~dg~i~iw~~~~~~~ 292 (353)
+..++++-+.|+.+|+||+.+++.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeE
Confidence 467999999999999999999874
No 473
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.10 E-value=20 Score=30.32 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=80.5
Q ss_pred CCeEEEecCCCcEEEEEcCCceeeeeccccC-cceEE-EEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC--
Q 018591 138 NGLIYSGSWDKTLKVWRVADLKCLESIKAHD-DAVNG-LVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-- 213 (353)
Q Consensus 138 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~-i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 213 (353)
...++.++.++.++.+|.++++.+...+... ..+.. ....++.++..+.++.+.-.|..++.. .-......
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~-----~W~~~~~~~~ 185 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTL-----KWTYETPAPL 185 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcE-----EEEEecCCcc
Confidence 3678999999999999988899888876554 11111 112445666666788998888888762 22211111
Q ss_pred C-ceeeEEEEcCCCCeEEeecC--CCcEEEeeccccccceeeeeeccccceeE--------EEEEEcCcEEEEecCCCeE
Q 018591 214 D-VSLNSVVVSDDGKWVYGGGS--DGFVMGWEGNVEIVRWKLACETKAHEMAV--------LCVCLVGEFLCSGSADKSI 282 (353)
Q Consensus 214 ~-~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~l~~~~~dg~i 282 (353)
. ....... .. ...++.+.. ++.+.-.|...+...+............+ ..+.. +.-+..++.++.+
T Consensus 186 ~~~~~~~~~-~~-~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~ 262 (370)
T COG1520 186 SLSIYGSPA-IA-SGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKL 262 (370)
T ss_pred ccccccCce-ee-cceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeE
Confidence 0 0001111 12 233444444 55677777777655554322111111111 11111 3334566777778
Q ss_pred EEEecCCCcce
Q 018591 283 GIWKREAFGKL 293 (353)
Q Consensus 283 ~iw~~~~~~~~ 293 (353)
.-.|..+++..
T Consensus 263 ~~l~~~~G~~~ 273 (370)
T COG1520 263 LCLDADTGELI 273 (370)
T ss_pred EEEEcCCCceE
Confidence 88888887743
No 474
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=31 Score=33.62 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=23.4
Q ss_pred ecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591 312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSS 341 (353)
Q Consensus 312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 341 (353)
+++ +..++++..||.+.+||+..++.
T Consensus 243 ~~~----~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRD----GSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccC----CceEEEEEecCCEEeeecCCCce
Confidence 666 89999999999999999998755
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.66 E-value=9.7 Score=26.38 Aligned_cols=104 Identities=12% Similarity=0.071 Sum_probs=56.4
Q ss_pred eEEEEcCCCcEEEEeCCCCCcc---cccceeeeeccCCceeeEEEEcC-----CCCeEEeecCCCcEEEeecccccccee
Q 018591 180 IVYSASADGKIKAWGKELGKSH---CHSLKGILEGHKDVSLNSVVVSD-----DGKWVYGGGSDGFVMGWEGNVEIVRWK 251 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~ 251 (353)
.|++++.-|+|.+++....... .......+...+. |++++-.+ +...|+.|+.. .+..||+..+...+
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~--italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~F- 87 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQE--ITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLF- 87 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCc--eEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhh-
Confidence 6777778888999887644311 1112233333322 36665443 34567776654 59999998874222
Q ss_pred eeeeccccceeEEEEEE-----cCcEEEEecCCCeEEEEecCCCc
Q 018591 252 LACETKAHEMAVLCVCL-----VGEFLCSGSADKSIGIWKREAFG 291 (353)
Q Consensus 252 ~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~ 291 (353)
.... ...+.++.. ...-++..+.+..|.-||.+..+
T Consensus 88 -yke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 88 -YKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred -hhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 1122 233333333 23344445556778888876554
No 476
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.21 E-value=23 Score=30.27 Aligned_cols=110 Identities=8% Similarity=-0.078 Sum_probs=60.5
Q ss_pred eeeEEEEcCCCCeEEeecCCCcEEEeecccccccee--eeeecc--ccceeEEEEEEc-CcEEEEecCCCeEEEEecCCC
Q 018591 216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK--LACETK--AHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAF 290 (353)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~--~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~ 290 (353)
.+..+.+.+++..++++ ..|.+. +....+.. +. ...... .....+..+.+. ...+++++.+|.+.... ..+
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~-~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G 357 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLT-EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGG 357 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEE-EecCCCCc-ccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCC
Confidence 35889999998877766 445443 33333210 00 011111 112346666553 45566667778666654 555
Q ss_pred cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591 291 GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334 (353)
Q Consensus 291 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw 334 (353)
+.......-..-....+.+.|.++ ++-+++ +.+|.|.-|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~----~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDD----KKGFVL-GNDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCC----CceEEE-eCCcEEEEe
Confidence 544444322334567889999876 455554 468877654
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.03 E-value=3.1 Score=21.30 Aligned_cols=27 Identities=7% Similarity=0.074 Sum_probs=21.7
Q ss_pred EEEEEeCCCcEEEEeCCCceeeEEecc
Q 018591 28 FILSASQGKDIIVWQQPDLRMFTKFGH 54 (353)
Q Consensus 28 ~l~s~~~dg~v~vwd~~~~~~~~~~~~ 54 (353)
.++.++.||.|.-.|..+|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668899999999999998887754
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.19 E-value=28 Score=30.48 Aligned_cols=25 Identities=0% Similarity=-0.207 Sum_probs=15.8
Q ss_pred ceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591 130 SISCLTVYN--GLIYSGSWDKTLKVWR 154 (353)
Q Consensus 130 ~i~~~~~~~--~~l~~~~~dg~v~iwd 154 (353)
.|..+..++ ..++-.+.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 455566666 6667777777665543
No 479
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=83.84 E-value=21 Score=33.15 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=82.3
Q ss_pred CeEEEecCCCcEEEEEcCCcee---eee-ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591 139 GLIYSGSWDKTLKVWRVADLKC---LES-IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214 (353)
Q Consensus 139 ~~l~~~~~dg~v~iwd~~~~~~---~~~-~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 214 (353)
..+..|+.++.+.++.-..+.. ... .......+.++.+..+.+..|.-||++-.+--.........+...+....
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~- 626 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGS- 626 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCC-
Confidence 5778899999999997652221 111 22234567777777777777777887766533222100000111111112
Q ss_pred ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-eEEEEecCCC
Q 018591 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-SIGIWKREAF 290 (353)
Q Consensus 215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~iw~~~~~ 290 (353)
.++.+.++..| ++.++.+|.|.++...+....+.... ...|...|+++...+.-+..+-..| .+++++.++.
T Consensus 627 lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~lea-hqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl 699 (925)
T KOG3522|consen 627 LPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEA-HQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETL 699 (925)
T ss_pred ccccchhhhhc---eeeeecCCceEEEechhccccchhHH-HHhhcceEEEEEeeCCceEEEEcCCCEEEEeccccc
Confidence 22366666655 66778899999999887644433322 2334567777777655444433333 4555555443
No 480
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=83.77 E-value=36 Score=31.37 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=44.1
Q ss_pred cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591 16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~ 84 (353)
..-++++.-+ ++-++.++.||+|+++++......+.... ..+-..+.|.+.-|+++..|..+.-|.-+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhgl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHGLVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccceEEEeccchhheeecc
Confidence 3456666665 78999999999999999866554322221 12233445555567777777777777644
No 481
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=83.57 E-value=26 Score=29.60 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=50.9
Q ss_pred eEEEEcCCCCeEEeec-----------CCC-cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEE
Q 018591 218 NSVVVSDDGKWVYGGG-----------SDG-FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIG 283 (353)
Q Consensus 218 ~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 283 (353)
..++|.++|+++++-. ..+ .|.+++-..+.........+.........+.+ ++ |+++......+
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~ 94 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILF 94 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEE
Confidence 7889999998777643 223 67777654332211111111111222234443 45 44444444333
Q ss_pred EEecCCC-----cceEEeccccC----CCcCeEEEEeecCCCCCCeEEEEcc
Q 018591 284 IWKREAF-----GKLCRVGAITG----HEGPVKCLQASPNAVGGGFLLYSGS 326 (353)
Q Consensus 284 iw~~~~~-----~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~l~s~~ 326 (353)
+.|.... +....+..+.. +......+.|.|| |.+.++-+
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD----G~LYv~~G 142 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD----GWLYFNHG 142 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC----CCEEEecc
Confidence 4454321 11112222322 2345788999999 87766655
No 482
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=83.12 E-value=5.2 Score=21.19 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=27.8
Q ss_pred eEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591 262 AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG 297 (353)
Q Consensus 262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 297 (353)
....+...|+++..+..++-+.|.|+.+...+..+.
T Consensus 3 ~a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~~v~ 38 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNGLVIVDISNPSNPVLVG 38 (42)
T ss_pred eEEEEEEECCEEEEEeCCCCEEEEECCCCCCCEEEE
Confidence 345667778998888877789999999887665554
No 483
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.54 E-value=21 Score=27.91 Aligned_cols=142 Identities=10% Similarity=0.128 Sum_probs=73.4
Q ss_pred EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccc--cccceeee-eeccc-ccee
Q 018591 190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNV--EIVRWKLA-CETKA-HEMA 262 (353)
Q Consensus 190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~--~~~~~~~~-~~~~~-~~~~ 262 (353)
-.+||+.+.+ .+.+....+.-..+-.+-+||+++.+|+.. ..+++++... ....+... ..+.. .-.+
T Consensus 48 s~~yD~~tn~------~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 48 SVEYDPNTNT------FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred EEEEecCCCc------EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 4678988876 222222233222445677899999988752 3577887644 11111111 11111 1122
Q ss_pred EEEEEEcCcEEEEecCCC-eEEEEecCCC-cceEEecccc---C--CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591 263 VLCVCLVGEFLCSGSADK-SIGIWKREAF-GKLCRVGAIT---G--HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335 (353)
Q Consensus 263 v~~~~~~~~~l~~~~~dg-~i~iw~~~~~-~~~~~~~~~~---~--h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~ 335 (353)
....-+||+.|+.|+.+. +..+|.-... .....+..+. . ...----+...|+ |++++.+..+. .|||
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPd----G~lFi~an~~s--~i~d 195 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPD----GNLFIFANRGS--IIYD 195 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCC----CCEEEEEcCCc--EEEe
Confidence 333445799888888764 3455554221 1111111111 0 0111224566788 99999998765 4567
Q ss_pred cCCCCCcc
Q 018591 336 VSKQSSTS 343 (353)
Q Consensus 336 ~~~~~~~~ 343 (353)
..+.+.+.
T Consensus 196 ~~~n~v~~ 203 (243)
T PF07250_consen 196 YKTNTVVR 203 (243)
T ss_pred CCCCeEEe
Confidence 77665433
No 484
>PRK13684 Ycf48-like protein; Provisional
Probab=81.98 E-value=28 Score=28.92 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=56.9
Q ss_pred eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcce
Q 018591 216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKL 293 (353)
Q Consensus 216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~ 293 (353)
.+..+.+.|++.+++++. .|.+..- ...+...+..... .....+.++.+ +++.+++| ..|.+++=..+.+...
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQR--NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeC--CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 358899999887666554 4544321 1122122333222 22334444444 46665554 5576653234444433
Q ss_pred EEeccccC-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591 294 CRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340 (353)
Q Consensus 294 ~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 340 (353)
..+..... -...+.++.+.|+ +..++++ .+|.+. .....++
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~----~~~~~~G-~~G~v~-~S~d~G~ 290 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTP----GEIWAGG-GNGTLL-VSKDGGK 290 (334)
T ss_pred ccccCCccccccceeeEEEcCC----CCEEEEc-CCCeEE-EeCCCCC
Confidence 32221111 1235788999987 6655544 567554 3444333
No 485
>PRK13616 lipoprotein LpqB; Provisional
Probab=80.76 E-value=45 Score=30.39 Aligned_cols=130 Identities=14% Similarity=0.004 Sum_probs=62.9
Q ss_pred CcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEE---EeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591 148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKA---WGKELGKSHCHSLKGILEGHKDVSLNSVVV 222 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 222 (353)
+.+.+.+++.++... .....|..+.|+++ .++... +|.|.+ -....+......+ ..+.......+..+.|
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~-~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP-REVGPGLGDTAVSLDW 504 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc-EEeecccCCccccceE
Confidence 455555655444433 23567999999443 444333 477776 3433333111111 1122222222378999
Q ss_pred cCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEE
Q 018591 223 SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGI 284 (353)
Q Consensus 223 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 284 (353)
.+++.++ ++..++...+|.+.-.-..... ..-......+.+++-....++....+|.+.+
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 9998855 5555554555554332111111 0111124455666655555666666664444
No 486
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.68 E-value=36 Score=28.71 Aligned_cols=161 Identities=16% Similarity=0.256 Sum_probs=64.5
Q ss_pred ceeeeeecCCceEEEEEeC---CeEEEec---CCCc-EEEEEcCC-ceeeeeccccC-c-ceEEEEE-eCC-eE-E-E--
Q 018591 120 HKRLWIEHADSISCLTVYN---GLIYSGS---WDKT-LKVWRVAD-LKCLESIKAHD-D-AVNGLVA-SKG-IV-Y-S-- 183 (353)
Q Consensus 120 ~~~~~~~~~~~i~~~~~~~---~~l~~~~---~dg~-v~iwd~~~-~~~~~~~~~~~-~-~v~~i~~-~~~-~l-~-~-- 183 (353)
....+......+.-+.|+| ..|+-|- .+.. -+||-+++ +...+.+..+. . .+..=-| .++ .+ . .
T Consensus 179 ~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 179 ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp -EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 3444445666777888888 4555543 2221 25565543 33333333332 2 2222233 333 21 1 1
Q ss_pred -EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC----------------cEEEeecccc
Q 018591 184 -ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG----------------FVMGWEGNVE 246 (353)
Q Consensus 184 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~i~d~~~~ 246 (353)
++.+..|.-+|+.+++ ....... ... .-+-.++|+++++-=+.|. -|++++++.+
T Consensus 259 ~~~~~~~i~~~d~~t~~-----~~~~~~~--p~~-~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTGE-----RRRLMEM--PWC-SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp TTT--EEEEEE-TTT-------EEEEEEE---SE-EEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred CCCCceEEEeeCCCCCC-----ceEEEeC--Cce-eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 2234456777887765 1111111 112 4556678888776433332 4555666654
Q ss_pred ccceeeee-----ecc---ccceeEEEEEEcCcE-EEEecCCCeEEEEecC
Q 018591 247 IVRWKLAC-----ETK---AHEMAVLCVCLVGEF-LCSGSADKSIGIWKRE 288 (353)
Q Consensus 247 ~~~~~~~~-----~~~---~~~~~v~~~~~~~~~-l~~~~~dg~i~iw~~~ 288 (353)
........ ... ...-+-.+++||++. |+.+...|...||-++
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 32111110 011 112345678888765 4566677777776543
No 487
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=79.57 E-value=31 Score=27.92 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=85.4
Q ss_pred CcEEEEEcCCceeeeeccc------cCcceEEEEEeC-------Ce-EEEEcCCCcEEEEeCCCCCcccccceeeeecc-
Q 018591 148 KTLKVWRVADLKCLESIKA------HDDAVNGLVASK-------GI-VYSASADGKIKAWGKELGKSHCHSLKGILEGH- 212 (353)
Q Consensus 148 g~v~iwd~~~~~~~~~~~~------~~~~v~~i~~~~-------~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 212 (353)
-.|.+||+.+.+.++++.- ..+.+..+.+.. .+ .++=+..+.|.++|+.+++. .+.+..+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-----~Rv~~~~~ 108 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-----WRVLHNSF 108 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-----EEEETCGC
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-----EEEecCCc
Confidence 3688889998888777632 245677887722 23 33444456899999998762 1111111
Q ss_pred ------------------CCceeeEEEEcC---CCCeEEeecCCCcEEEeeccccccc----------eeeeeec--ccc
Q 018591 213 ------------------KDVSLNSVVVSD---DGKWVYGGGSDGFVMGWEGNVEIVR----------WKLACET--KAH 259 (353)
Q Consensus 213 ------------------~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~--~~~ 259 (353)
... +..++.+| +++.|.-....+ -++|.+.+.... ......+ ++.
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg-~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~ 186 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDG-IFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS 186 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTS-EEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---
T ss_pred ceeccccceeccCceEecCCC-ccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCC
Confidence 011 24555554 555555443332 234433331100 0000111 112
Q ss_pred ceeEEEEEEcCcEEEEecCCCeEEEEecCCCc---ceEEeccccCCCcCeEEEEeec--CCCCCCeEEEEc
Q 018591 260 EMAVLCVCLVGEFLCSGSADKSIGIWKREAFG---KLCRVGAITGHEGPVKCLQASP--NAVGGGFLLYSG 325 (353)
Q Consensus 260 ~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~l~s~ 325 (353)
......+..+|.++++--..+.|..|+....- ....+..-...-..+.++.+.+ + |.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~----g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGD----GYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--T----S-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccC----ceEEEEE
Confidence 33445566668888888899999999988622 2223322121235678888888 5 5554443
No 488
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.19 E-value=25 Score=26.63 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=39.1
Q ss_pred EEEEC-CcEEEEEeCC--CcEEEEeCCCceeeEEeccCceeeEE--EEEeCCEEE-EecCCCcEEEEEcccCc
Q 018591 21 SLALC-GEFILSASQG--KDIIVWQQPDLRMFTKFGHGDGSVKA--VVTVGNKVF-TAHQDSRIRVWKVSRSS 87 (353)
Q Consensus 21 ~~~~~-~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~-s~~~dg~i~~w~~~~~~ 87 (353)
.+.+. |.++.+.+.- ..|++||+.+++.+.+-.-....+.. +.-.++++. -.-.+|.-..+|.++-+
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh
Confidence 34443 6677776653 47999999999887665433222221 111244433 34567777788877654
No 489
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=78.84 E-value=20 Score=33.26 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=87.3
Q ss_pred eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc-cceeeeeeccc
Q 018591 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI-VRWKLACETKA 258 (353)
Q Consensus 180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 258 (353)
.+..++.++.+.++.-..+. ...............+.++.+++. -+..|.-||++-.|--.... ....+......
T Consensus 549 Tic~gtq~ssisissss~~s--~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDS--IKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred cccccCccceeEEeeccCCc--ccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCcccccc
Confidence 56778888888888765222 011122222222223355555543 35555566665554322110 00011112223
Q ss_pred cceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 259 HEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 259 ~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
...++....+....+ .++.+|.|.++...+............|...|+++..... +-+++.++.| .++.++.++
T Consensus 625 g~lPvrsla~~ed~~-was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~----gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 625 GSLPVRSLAFQEDFV-WASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDN----GVWVAFASGD-EERLFHTET 698 (925)
T ss_pred CCccccchhhhhcee-eeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCC----ceEEEEcCCC-EEEEecccc
Confidence 345566666655544 4567899999998876544444445566778999999987 7777777666 456666666
Q ss_pred CCCcccc
Q 018591 339 QSSTSDS 345 (353)
Q Consensus 339 ~~~~~~~ 345 (353)
-.-++.+
T Consensus 699 l~hlqd~ 705 (925)
T KOG3522|consen 699 LWHLQDS 705 (925)
T ss_pred cCCcccc
Confidence 5555443
No 490
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=78.78 E-value=6.1 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=26.9
Q ss_pred EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591 184 ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG 232 (353)
Q Consensus 184 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 232 (353)
+..+|.+.-||..+++ . ..+...-..+ +.+++++|+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~-----~-~vl~~~L~fp-NGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKE-----T-TVLLDGLYFP-NGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTE-----E-EEEEEEESSE-EEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCe-----E-EEehhCCCcc-CeEEEcCCCCEEEEE
Confidence 4556889999999886 3 3333333445 899999999976654
No 491
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.43 E-value=64 Score=30.81 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=41.5
Q ss_pred ceE-EEEECCcEEEEEeCCCcEEEEeCCCceee---EE------e--ccCceeeEEEEEe-CCEEEEecCCCcEEEEEcc
Q 018591 18 SVS-SLALCGEFILSASQGKDIIVWQQPDLRMF---TK------F--GHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVS 84 (353)
Q Consensus 18 ~v~-~~~~~~~~l~s~~~dg~v~vwd~~~~~~~---~~------~--~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~ 84 (353)
.|. |++-.|+.+..|+.||.+.+|.+.....- .. + .-+..+|..+... ..-++-.-.|+.+.+.++.
T Consensus 17 ~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~ 96 (877)
T KOG2063|consen 17 EVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLP 96 (877)
T ss_pred ccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecC
Confidence 444 66667999999999999999997654211 11 1 1123455554433 2223333345678888776
Q ss_pred cCc
Q 018591 85 RSS 87 (353)
Q Consensus 85 ~~~ 87 (353)
+-+
T Consensus 97 ~~~ 99 (877)
T KOG2063|consen 97 ELE 99 (877)
T ss_pred ccc
Confidence 554
No 492
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=76.70 E-value=40 Score=27.57 Aligned_cols=236 Identities=8% Similarity=-0.075 Sum_probs=0.0
Q ss_pred CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEE
Q 018591 67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYS 143 (353)
Q Consensus 67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~ 143 (353)
.+|+.|.++|...+. ++.......+. .+...|+++...+ -+++.
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl--------------------------------~~~~~v~q~~v~~~~~lLi~L 60 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKL--------------------------------IGRRSVTQIWVLEENNVLLMI 60 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEe--------------------------------cCcCceEEEEEEhhhCEEEEE
Q ss_pred ecCCCcEEEEEcCCcee----------------eeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCccccc
Q 018591 144 GSWDKTLKVWRVADLKC----------------LESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHS 204 (353)
Q Consensus 144 ~~~dg~v~iwd~~~~~~----------------~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~ 204 (353)
++....++.+++..-.. .. .-++...........+ .++.+....+|.++...........
T Consensus 61 sgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~-~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~ 139 (302)
T smart00036 61 SGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLT-KIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKL 139 (302)
T ss_pred eCCcceEEEEEHHHhhhhhhccCCccccccccceE-eCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhh
Q ss_pred cee--eeeccCCceeeEEEEcCC--CCeEEeecCCCcEEEeeccc--cccceeeeeeccccce--eEEEEEEcCcEEEEe
Q 018591 205 LKG--ILEGHKDVSLNSVVVSDD--GKWVYGGGSDGFVMGWEGNV--EIVRWKLACETKAHEM--AVLCVCLVGEFLCSG 276 (353)
Q Consensus 205 ~~~--~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~ 276 (353)
... .+......++..+..+++ ...++.|+..+...++++.. ................ ++..+..+.+.++.+
T Consensus 140 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc 219 (302)
T smart00036 140 FKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLC 219 (302)
T ss_pred hcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEE
Q ss_pred cCCCeEEEEecC-CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591 277 SADKSIGIWKRE-AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE 347 (353)
Q Consensus 277 ~~dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 347 (353)
..+..+.+=.-- .......+.- .....++++... +|+.-+.++ |.++++.+++.+++...
T Consensus 220 ~~~~~v~Vn~~G~~~~r~~~l~w----~~~p~~~~~~~p------yll~~~~~~-ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 220 YDEFGVFVNLYGKRRSRNPILHW----EFMPESFAYHSP------YLLAFHDNG-IEIRSIKTGELLQELAD 280 (302)
T ss_pred ECcEEEEEeCCCCccccceEEEc----CCcccEEEEECC------EEEEEcCCc-EEEEECCCCceEEEEec
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=76.62 E-value=46 Score=28.18 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=78.4
Q ss_pred CcEEEEEcC--Cceeeeeccc-------cCcceEEEEE--eC--C--eEEEEcCCCcEEEEeCCCCCc--ccccceeeee
Q 018591 148 KTLKVWRVA--DLKCLESIKA-------HDDAVNGLVA--SK--G--IVYSASADGKIKAWGKELGKS--HCHSLKGILE 210 (353)
Q Consensus 148 g~v~iwd~~--~~~~~~~~~~-------~~~~v~~i~~--~~--~--~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~ 210 (353)
..|++|.+. ++. +..+.. ....++.+|+ ++ + +.+....+|.+..|.+..... ....+.+.+.
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 468888775 333 232221 1234677887 22 2 677788899999888753221 2233455555
Q ss_pred ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-eeeeeeccc--cceeE--EEEEE--c--CcEEEEecCCCe
Q 018591 211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-WKLACETKA--HEMAV--LCVCL--V--GEFLCSGSADKS 281 (353)
Q Consensus 211 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~--~~~~v--~~~~~--~--~~~l~~~~~dg~ 281 (353)
... .+..+.......+|+.+-++.-|.-|+.+..... ...+....+ ....+ .++-. + |.+|++.-.+++
T Consensus 206 ~~s--Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 206 VGS--QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp -SS---EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred CCC--cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 543 2488888888889999999887888877643211 122212111 11222 33332 2 335556667889
Q ss_pred EEEEecCCC
Q 018591 282 IGIWKREAF 290 (353)
Q Consensus 282 i~iw~~~~~ 290 (353)
..+|+.+..
T Consensus 284 f~Vy~r~~~ 292 (381)
T PF02333_consen 284 FAVYDREGP 292 (381)
T ss_dssp EEEEESSTT
T ss_pred EEEEecCCC
Confidence 999998754
No 494
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=76.40 E-value=57 Score=29.21 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=67.2
Q ss_pred cceEEEEEeCC------eEEEEcCCCcEEEEeCCCCCcccccceeee--eccCCce--eeEEEEcCCCCeEEeecCCCcE
Q 018591 169 DAVNGLVASKG------IVYSASADGKIKAWGKELGKSHCHSLKGIL--EGHKDVS--LNSVVVSDDGKWVYGGGSDGFV 238 (353)
Q Consensus 169 ~~v~~i~~~~~------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i 238 (353)
..|..+.|.+- .+++......|.+|.+........+..... +.....+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45788888221 566677788999998863322111122211 1111111 1568899998888877766666
Q ss_pred EEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEe-cCCCeEEEEecCC
Q 018591 239 MGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSG-SADKSIGIWKREA 289 (353)
Q Consensus 239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~dg~i~iw~~~~ 289 (353)
.+++++......+ ... ...+.|.|.+| ||+.|+++ +..=.-++||-..
T Consensus 137 V~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 6677665432212 222 33556666666 57655544 4444567888543
No 495
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=75.88 E-value=77 Score=30.41 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=95.7
Q ss_pred cEEEEEcCCceeeeecccc-Cc---ceEEEEE--eCC-eEEEEcC----------CCcEEEEeCCCCCcccccceeeeec
Q 018591 149 TLKVWRVADLKCLESIKAH-DD---AVNGLVA--SKG-IVYSASA----------DGKIKAWGKELGKSHCHSLKGILEG 211 (353)
Q Consensus 149 ~v~iwd~~~~~~~~~~~~~-~~---~v~~i~~--~~~-~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~ 211 (353)
.++++|-++.+.+...+.. .. .+.+..| .++ ++++|.. .|.|.+|.....+ .+...-+.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~----~L~~v~e~ 826 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN----SLELVAET 826 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC----ceeeeeee
Confidence 3667776666554433211 12 3334446 223 6666542 4677777776632 02111111
Q ss_pred cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCC
Q 018591 212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREA 289 (353)
Q Consensus 212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~ 289 (353)
.-...+.++.. -+|+++|.- +..|++|++..+ +.......+...+..+. ..++.+++|.--+.+.+-..+.
T Consensus 827 ~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~----~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 827 VVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTE----RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred eeccceeehhh-hCCeEEEec--CcEEEEEEcccc----ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 11111122221 146655543 567999999877 33333344555555554 4599999999888877765544
Q ss_pred Ccc-eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 290 FGK-LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 290 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
.+. +..++ -.-+..+++++.+-.+ ..++-+..+|.+.+-...+
T Consensus 900 ~eg~f~evA-rD~~p~Wmtaveil~~-----d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 900 DEGNFEEVA-RDYNPNWMTAVEILDD-----DTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred cCCceEEee-hhhCccceeeEEEecC-----ceEEeecccccEEEEEecC
Confidence 331 22222 2346778899988875 4566667788888776653
No 496
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=75.88 E-value=37 Score=26.81 Aligned_cols=66 Identities=9% Similarity=0.159 Sum_probs=48.0
Q ss_pred ccCceEEEEE---C------CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEE----Ee--CCEEEEecCCCcEE
Q 018591 15 HVGSVSSLAL---C------GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV----TV--GNKVFTAHQDSRIR 79 (353)
Q Consensus 15 h~~~v~~~~~---~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~----~~--~~~l~s~~~dg~i~ 79 (353)
+...|+||+- + -..|+.|..+|.|.|.|.+....+....-..-++ .+. |+ +-+++.+++||.|.
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEE
Confidence 4567899876 1 3589999999999999998888877776544443 222 22 34688899999987
Q ss_pred EE
Q 018591 80 VW 81 (353)
Q Consensus 80 ~w 81 (353)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=75.11 E-value=83 Score=30.46 Aligned_cols=134 Identities=12% Similarity=0.021 Sum_probs=73.7
Q ss_pred CCCcEEEEEcC-Cceeeeec--cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-CceeeEEE
Q 018591 146 WDKTLKVWRVA-DLKCLESI--KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-DVSLNSVV 221 (353)
Q Consensus 146 ~dg~v~iwd~~-~~~~~~~~--~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 221 (353)
.+|.++.|++- .++.+.-+ ..-.+++.+|+--.+++++| ....+++||+...+ +.+..+... ...|..+.
T Consensus 910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~-----lLRk~e~k~~p~~Is~iq 983 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKK-----LLRKCELKFIPNRISSIQ 983 (1205)
T ss_pred CCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHH-----HHhhhhhccCceEEEEEe
Confidence 45667777653 34422222 12356777777655555544 45689999998776 333322222 22335555
Q ss_pred EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE-EcCcEEEEecCCCeEEEEecC
Q 018591 222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC-LVGEFLCSGSADKSIGIWKRE 288 (353)
Q Consensus 222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~iw~~~ 288 (353)
+. +..+++|...-.+..+-.+.+.........-.. ...++++. .|...+|.+..=|.+.+-.+.
T Consensus 984 t~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~-pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 984 TY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPV-PRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCc-cceeeEEEEecCCceeeccccCcEEEEECC
Confidence 43 557888776666666555443322222222222 23344443 467778888887887776653
No 498
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.09 E-value=42 Score=27.04 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=94.7
Q ss_pred cccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591 165 KAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242 (353)
Q Consensus 165 ~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 242 (353)
.+-...+.++.|+++ .|++......-.++=..+++ +++.+.-..-.-...+.+..++++.++--.++.+.++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd-----lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD-----LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCc-----eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 344556999999444 77777766666666555565 44443322211126788888888888888888888887
Q ss_pred ccccccceee---eeec--ccc-ceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCC-------cCeE
Q 018591 243 GNVEIVRWKL---ACET--KAH-EMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE-------GPVK 307 (353)
Q Consensus 243 ~~~~~~~~~~---~~~~--~~~-~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~-------~~v~ 307 (353)
+......... ...+ ..+ ....-.++++ ...|+.+-+-.=+.||..........+.....++ ..|.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 7654211111 1111 111 2233344554 5667777666667777765433111122122222 2467
Q ss_pred EEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591 308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338 (353)
Q Consensus 308 ~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 338 (353)
++.|.+.. +.+|+-+.+++.+.-.+...
T Consensus 237 gl~~~~~~---~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 237 GLEFNAIT---NSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cceecCCC---CcEEEEecCCceEEEEecCC
Confidence 77888652 66777777777766665543
No 499
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=74.75 E-value=62 Score=28.83 Aligned_cols=244 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec-CCceEEEEEeC-C--eE
Q 018591 66 GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH-ADSISCLTVYN-G--LI 141 (353)
Q Consensus 66 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~--~l 141 (353)
+..++.+..+|.+....+..... .-.+..+ +. ....+++.+.. + ++
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~----------------------------g~~~~~~s~l~~l~~g~d~l 271 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGG--SISITYL----------------------------GTLCSIASSLTYLKNGGDYL 271 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEE--EEEEEEE----------------------------EE--S-ESEEEEESTT--EE
T ss_pred CCEEEEEeCCCeEEEEEEEECCC--eEEEEEc----------------------------CCcCChhheEEEEcCCCEEE
Q ss_pred EEecC--CCcEEEEEcCCceeeeeccccCcceEEEEEeCC------------eEEEEcC---CCcEEEEeCCCCCccccc
Q 018591 142 YSGSW--DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG------------IVYSASA---DGKIKAWGKELGKSHCHS 204 (353)
Q Consensus 142 ~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~------------~l~~~~~---dg~i~iwd~~~~~~~~~~ 204 (353)
+.|+. |+.+..|.....+.+..+.. -++|.+++.-+. .+++++. +|.+++..-.-+- .
T Consensus 272 f~gs~~gds~l~~~~~~~l~~~~~~~N-~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~----~ 346 (504)
T PF10433_consen 272 FVGSEFGDSQLLQISLSNLEVLDSLPN-WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGI----E 346 (504)
T ss_dssp EEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEE----E
T ss_pred EEEEecCCcEEEEEeCCCcEEEEeccC-cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCc----e
Q ss_pred --ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec---cccccceeeee-eccccceeEEEEEEcCcEEEEecC
Q 018591 205 --LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG---NVEIVRWKLAC-ETKAHEMAVLCVCLVGEFLCSGSA 278 (353)
Q Consensus 205 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~~~~~ 278 (353)
.........-..+..+....+....+..+....-+++.+ +.......... .+.....++.+-...+..++=...
T Consensus 347 ~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~ 426 (504)
T PF10433_consen 347 GLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTP 426 (504)
T ss_dssp --EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEES
T ss_pred eeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEec
Q ss_pred CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc------CCCccc
Q 018591 279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE------EKSIIS 352 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~------~~~~~~ 352 (353)
.+ |++.+....+. ...........|.+.+.... +++.+-.++.+..+.+.......... ....++
T Consensus 427 ~~-i~l~~~~~~~~--~~~w~~~~~~~I~~a~~~~~------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis 497 (504)
T PF10433_consen 427 KG-IRLIDLEDGKL--TQEWKPPAGSIIVAASINDP------QVLVALSGGELVYFELDDNKISVSDNDETILELDNEIS 497 (504)
T ss_dssp SE-EEEEESSSTSE--EEEEE-TTS---SEEEESSS------EEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EE
T ss_pred Ce-EEEEECCCCeE--EEEEeCCCCCeEEEEEECCC------EEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceE
Q ss_pred C
Q 018591 353 C 353 (353)
Q Consensus 353 c 353 (353)
|
T Consensus 498 ~ 498 (504)
T PF10433_consen 498 C 498 (504)
T ss_dssp E
T ss_pred E
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.10 E-value=16 Score=29.37 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc------CCCeEEEEEcCCCC
Q 018591 279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS------LDKSLRVWWVSKQS 340 (353)
Q Consensus 279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~------~dg~i~iw~~~~~~ 340 (353)
-..|++||..+.+ -...-.+-.+.|++|.|..+ .++++.|. ....+..||+.+..
T Consensus 15 C~~lC~yd~~~~q---W~~~g~~i~G~V~~l~~~~~----~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ---WSSPGNGISGTVTDLQWASN----NQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCE---eecCCCCceEEEEEEEEecC----CEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 4569999988754 22223345788999999966 67777764 45678889987764
Done!